GPI Lipid Anchor Project

The self-consistency-test of the learning set for Metazoa

Contact:
Birgit Eisenhaber (IMP/Austria)
Peer Bork (MDC/EMBL)
Frank Eisenhaber (IMP/Austria)

Description of Prediction Function
Prediction Results
How to read the prediction results

# 
# ------------------------------------------------------------------- #
# 
# package *-> meta <-*
# ********************
# 
# name of executable           : meta
# time of program compilation  : Apr 14 1999 (16:42:33)
# time of program execution    : Thu Apr 15 14:22:55 1999
# version of the code          : Revision: 1.15 (Date: 1999/01/28 15:56:41)
# 
ReadAapLib: AAProperty library  opened
Number of entrys in AapLib: <641>
-->All selects were switched on.


Selection parameters:
---------------------
0:     PToken: OC   
       SToken: 
         RExp: METAZOA
    is_SToken: 0
       expect: 1

-->OpenSWFile: Data file <./gpi.learn.sav> opened


-->begin GPI-site evaluations
-->ReadGPILib: GPI library  opened
 INFO> ReadGPILib: VARSPLIC line in entry <UPAR_RAT> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORCA> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORMA> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <CEPU_CHICK> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <DAF_HUMAN> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <NRTR_HUMAN> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <NRTR_MOUSE> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <OPCM_RAT> .!!
number of entries of file 1                   :   169
number of accepted entries of file 1          :   169
total number of entries                       :   169

-->Statistic_confidence of GPILib 1 : 
number of accepted entries                    :   169
number of entries with certain GPI-site       :    40
number of entries with potential GPI-site     :    65
number of entries with GPI-site by similarity :    64

-->GPIStatistic_Length: GPILibNumber = 1
Lmin                :  14 ( entry: PAG1_TRYBB, file: 1 )
Lmax                :  31 ( entry: THY1_MACMU, file: 1 )
deltaL              :   5
number of intervals :   4
interval of length   from     to    number of entries
                 1     14     19                   21
                 2     20     24                   84
                 3     25     29                   53
                 4     30     34                   11
total number of entries                       :   169

-->Statistic_taxonomy of GPILib 1 / total number of entries 169
     1 VIRIDAE
   168 EUKARYOTA
   120 ..METAZOA
     5 ....INSECTA
   113 ....VERTEBRATA
     3 ......PISCES
     5 ......AVES
   105 ......MAMMALIA
    55 ........PRIMATES
    10 ..FUNGI
    38 ..PROTOZOA

-->Calc_EVD_Param: file of values  opened
LinearCorrelation of 23988 data points [x,y]
           r=-0.969276 (P=0.000000)

LinearFit: from 23988 datapoints [x,y] for y=a+bx (23986 degrees of freedom)
           without weights (RMSD) for y (uniform sigma is estimated)
           x mean=-63.309381 (stan.dev.=20.985400)
           y mean=-0.577043 (stan.dev.=1.281476)
           interception a=-4.324257	(siga=0.006469)
           slope        b=-0.059189	(sigb=0.000097)
           correlation  R(siga,sigb)=0.949213

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > statistical validation
        1) total chi2=2383.335462,	P=1.000000e+00 B=-ln(P)/df= 0.000
           (used for weight estimation !)

        2) t-Test for interception a=0: t=-668.496107	P=0.000000e+00
           [-4.345545,-4.302969] for alpha=0.001 (TWO_SIDED, Tna=3.291016)
           [-4.340921,-4.307594] for alpha=0.010 (TWO_SIDED, Tna=2.576050)
           [-4.336936,-4.311578] for alpha=0.050 (TWO_SIDED, Tna=1.960068)

        3) t-Test for slope        b=0: t=-610.284046	P=0.000000e+00
           [-0.059508,-0.058870] for alpha=0.001 (TWO_SIDED, Tna=3.291016)
           [-0.059439,-0.058939] for alpha=0.010 (TWO_SIDED, Tna=2.576050)
           [-0.059379,-0.058999] for alpha=0.050 (TWO_SIDED, Tna=1.960068)

        4) Fisher's test (average of function value versus regression)
           F=372446.616952 (df1=1, df2=23986) P=0.000000e+00

   u: -73.058549 lambda: 0.059189
Thresholds for GPI-anchor selecting:
   A-site: p = 0.0025 score =  28.15
   B-site: p = 0.0050 score =  16.41
   C-site: p = 0.0075 score =   9.54
   D-site: p = 0.0100 score =   4.66
   S-site: p = 0.0175 score =  -4.86

-->All flags were switched on.

-->Switch_Off_Tax: number of entries before procedure : 169
-->Flags of all entries except METAZOA switched off
-->Switch_Off_Tax: number of entries after procedure : 120

-->Switch_Off_Len: number of entries before procedure : 120
-->Flags of all entries with AALen-GPIPos > 31 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 120

possible largest subset found: Q =   55
largest subset found: q = 55
number of 0's in found largest subset: 0
-->Mean and Dispersion of property NAKH920105 from 3 to 8
   Mean: 7.586818
   Dispersion: 2.795649
-->Mean and Dispersion of property NAKH920105 from 10 to SEQUENCE_CEND
   Mean: 12.340130
   Dispersion: 1.835736
-->Mean and Dispersion of property NAKH920105 from 26 to SEQUENCE_CEND
   Mean: 11.194182
   Dispersion: 2.884106
-->Mean and Dispersion of property HAGECH94_V from 3 to 8
   Mean: 129.847273
   Dispersion: 15.545275
-->Mean and Dispersion of property  at position(s) -1 0 1 2 
   number of selected entries: 55
   Mean : 410.230909
   Dispersion:  61.184605
-->Mean and Dispersion of property  at position(s) -1 1 2 
   number of selected entries: 55
   Mean : 311.376364
   Dispersion:  55.536804
-->Mean and Dispersion of property  at position(s) -1 2 
   number of selected entries: 55
   Mean : 218.958182
   Dispersion:  43.157960
-->All flags were switched on.

-->Switch_Off_Tax: number of entries before procedure : 169
-->Flags of all entries except METAZOA switched off
-->Switch_Off_Tax: number of entries after procedure : 120

-->Switch_Off_Len: number of entries before procedure : 120
-->Flags of all entries with AALen-GPIPos > 31 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 120

NSubFam = 49
Profile:
Ala
 -0.2  -0.7  -0.6  -1.0  -0.5  -2.1  -1.0   0.1   0.5   1.3  -0.3  -0.2  -0.5   0.1  -0.7 
 -0.6   1.1   1.4  -1.4  -0.8   0.0   0.6   0.5  -0.3  -0.3  -0.2  -0.4  -1.4  -0.1   0.3 
  0.2  -1.0   0.5   0.1   0.1   0.7   0.1   0.1   0.2  -0.1   1.1 
Cys
 -0.7   1.0   1.7   0.7   1.0   1.7   0.1   1.4   0.6   0.7   0.8   0.7   0.0  -3.3  -2.4 
  1.3  -4.7  -4.8  -3.4   0.1   0.1   0.1  -3.8   1.2  -4.2  -4.7   0.7   0.1  -4.6  -4.9 
 -0.6  -4.6  -0.6   0.5  -0.5  -4.5   0.2  -0.5   1.4   1.1   0.2 
Asp
 -1.0   0.2  -1.0  -0.3  -1.0   0.2  -0.5   0.3  -0.9   0.3   0.7   0.6  -0.6  -3.3  -1.7 
  0.3  -1.6  -4.8  -1.7  -1.7  -4.5  -3.8  -3.8  -1.6  -4.2  -4.7  -1.6  -4.8  -4.6  -4.9 
 -4.8  -4.6  -4.7  -4.6  -4.3  -4.5  -4.2  -4.5  -4.2  -3.8  -3.8 
Glu
 -0.1  -1.8  -0.7  -0.8   1.3   0.0   1.2  -3.7  -1.1  -0.7  -0.5  -0.1   0.0  -0.7  -0.2 
 -5.3  -0.7  -4.8  -1.1  -1.1  -4.5  -0.5  -0.5  -1.1  -4.2  -4.7  -4.6  -4.8  -4.6  -4.9 
 -4.8  -4.6  -4.7  -4.6  -4.3  -4.5  -4.2  -4.5  -4.2  -1.2  -3.8 
Phe
 -1.4  -1.4  -0.3  -2.9  -1.4  -1.4   0.4  -0.7  -1.3   0.2  -1.4  -0.3  -1.4  -1.4  -0.3 
 -5.3  -1.3  -4.8  -3.4   0.0   1.7  -0.7  -3.8  -0.7   0.0   0.9   0.1   0.5   0.3  -0.6 
  0.0   2.0   0.7  -4.6   1.8   0.3   0.4   0.5   0.0   0.3  -0.6 
Gly
 -0.6  -0.6   0.0  -2.0  -1.3  -0.7  -0.1   0.0  -0.3  -0.3   0.2   0.0   0.3   0.1   1.2 
  0.6   1.2   1.2  -0.2  -0.9  -0.9   0.0   0.4   0.1  -0.6   0.0  -1.9  -1.9  -0.8  -0.8 
 -1.3  -0.3  -2.0  -1.3  -1.2  -1.9  -1.2  -4.5   1.3   0.7   0.4 
His
 -0.8   0.2  -0.1  -0.8  -0.8  -0.1  -0.8  -3.7  -3.0  -3.8  -0.8  -0.1  -2.0  -0.8  -0.8 
 -5.3  -4.7  -0.8   0.8   1.0   0.3   0.9  -3.8   0.2   0.8  -0.1  -4.6  -4.8  -4.6  -4.9 
 -0.1  -4.6  -4.7   0.8   0.0   0.0  -0.7  -4.5  -0.6   0.6   1.6 
Ile
  1.3  -1.0   0.3  -1.1  -0.4   0.0  -1.7  -0.6  -0.6  -1.0  -3.1  -0.5   0.0  -1.0  -0.7 
 -5.3  -4.7  -4.8   0.5  -1.0   0.1  -0.1  -0.8  -1.0   0.2  -0.6   1.6   0.6   0.9   1.6 
 -0.6  -0.6   0.0   1.6  -0.9   0.3   1.7  -0.9  -1.5  -1.1  -0.3 
Lys
  0.2  -3.2   0.0   0.4   0.3   1.0  -0.2  -0.2  -1.1  -0.2  -0.7   0.1  -0.8   0.1   0.4 
 -5.3  -4.7  -4.8  -1.1  -1.8  -4.5  -3.8  -0.4  -0.3  -1.1  -1.1  -4.6  -4.8  -4.6  -4.9 
 -4.8  -4.6  -1.1  -4.6  -4.3  -4.5  -1.7  -0.1  -4.2  -3.8  -3.8 
Leu
 -0.5  -0.9  -1.2  -0.1   0.2  -0.9   0.1  -0.9  -0.6  -3.8  -0.9  -3.6  -0.3   0.1  -2.3 
 -5.3  -4.7  -0.8  -0.4   1.0   0.9   0.2  -0.6  -0.7   0.5   0.7   1.3   1.7   1.6   1.0 
  0.9   1.2   1.6   1.3   1.0   1.7   0.9   1.1   0.9   0.9   0.0 
Met
 -3.4   0.4  -1.0  -1.0   0.4  -2.6  -3.2  -3.7  -3.0  -0.9  -0.2  -0.3   0.1  -0.9  -0.9 
 -5.3  -0.9   1.9   0.0  -0.9   0.2  -0.9  -1.0  -3.5  -0.3  -4.7  -0.9  -4.8  -0.9  -4.9 
 -0.9  -4.6  -1.0   0.9   0.2   0.2  -0.1  -0.1  -4.2  -0.3  -3.8 
Asn
  0.4   0.0   0.1  -0.4   0.6   0.5   0.3  -0.4   0.8  -0.8   0.1  -0.1  -0.4  -0.8  -0.1 
  1.3  -4.7  -4.8  -0.8  -0.8  -4.5  -1.5  -0.4  -3.5   0.1  -4.7  -4.6  -1.4  -4.6  -4.9 
 -4.8  -0.8  -4.7  -4.6  -1.4  -4.5  -4.2  -1.4  -4.2  -3.8  -3.8 
Pro
  0.3   0.5   0.4   0.9   0.2  -0.9   0.7   0.4   0.2   0.2   0.2  -0.6   0.3  -0.2   0.0 
 -5.3  -0.9  -1.6   0.6   0.4   0.2  -0.9   0.8   1.7   1.8   0.3  -1.6  -0.2  -0.3  -0.9 
 -0.9  -0.2  -0.9   0.0  -4.3  -4.5  -1.5  -4.5  -0.7  -1.0   0.6 
Gln
  0.2   0.4   1.5   0.7  -0.5  -0.7   0.0   0.2   1.4  -0.3   0.0   0.3   1.7  -0.7  -0.7 
 -5.3  -1.4  -1.4  -1.4  -0.3  -4.5  -0.7  -0.7   0.6  -1.4  -4.7  -4.6  -4.8  -1.4  -4.9 
 -4.8  -1.4  -4.7  -1.4  -0.5  -1.3  -4.2   0.1  -1.2   1.4   0.7 
Arg
 -3.4  -1.8  -1.8  -1.1  -3.0   0.8  -1.8  -0.7   0.3   0.1  -1.8  -0.7   0.4   1.4   0.0 
 -5.3  -0.7  -1.8  -0.4   0.3  -0.1  -0.7  -0.4  -1.1  -4.2  -4.7  -4.6  -4.8  -1.8  -4.9 
 -4.8  -4.6  -4.7  -1.8  -1.0  -1.0  -0.3  -1.0  -0.5  -0.1  -1.0 
Ser
  0.1   0.6  -0.2   0.3  -1.3  -0.9   0.3   1.3   0.3  -0.8   0.3  -0.6   0.2  -0.3   0.8 
  2.0   1.7   0.2   0.6   1.0   0.4   1.6   1.4   0.5  -1.3  -0.6   0.8  -0.1   0.1   0.0 
  1.8  -0.3  -0.4  -0.5   0.5  -1.9   0.3  -0.3   0.3  -1.3   0.2 
Thr
  0.8   1.4  -0.1   0.5   0.0  -0.2   0.4   0.1  -0.4   0.4  -0.1   0.4  -1.1   0.3   0.6 
 -1.7  -1.1   0.6   0.1   0.2  -1.1  -0.3  -0.4   0.0   0.5   0.5  -1.7  -4.8  -0.1   0.0 
  0.6  -0.1  -0.4  -1.8   0.4  -0.5  -1.7  -1.7  -0.1  -0.1   0.1 
Val
 -0.9   0.3  -1.2  -0.3   0.3  -0.3  -0.8  -0.1   0.0  -0.9  -0.5  -0.3  -0.9   0.5  -0.3 
 -5.3  -1.9  -1.9   1.4  -1.2  -0.8  -1.2  -0.3  -0.1  -0.3   1.4   0.1   0.3  -0.3   0.8 
 -0.8   0.5   0.4  -0.5  -0.2  -0.7  -0.3   1.4  -1.7  -3.8  -0.5 
Trp
 -0.4  -3.2  -1.5  -2.9  -0.3  -2.6  -3.2  -3.7  -3.0  -3.8  -3.1  -3.6  -0.4  -3.3  -2.4 
 -5.3  -4.7  -4.8   0.8  -1.5   0.8  -3.8  -0.3  -0.2   1.1   1.1  -4.6   1.3  -4.6   0.4 
 -4.8  -4.6   0.8  -4.6  -4.3   0.9  -0.2   1.4   1.3  -3.8  -3.8 
Tyr
 -0.1  -0.5   0.9   1.7  -1.2   0.9  -3.2  -0.5  -0.1   0.9   2.0   1.8  -0.4  -0.2  -0.4 
 -5.3  -4.7  -4.8  -3.4  -1.2  -0.5  -1.2  -1.2  -3.5  -1.2  -4.7  -1.1  -1.1  -4.6  -4.9 
 -4.8  -0.4  -4.7  -4.6  -1.1  -0.9  -4.2  -4.5  -0.3   0.5  -3.8 

ConsensSequence: i t q y e k e s q a y y q r g S s a v l l s s p p v l L l i s l l l l l i v g l a

Positions with profile component > 1.0 for all amino acid types
Ala  -6 1 2 25
Cys  -14 -13 -10 -8 0 8 23 24
Asp 
Glu  -11 -9
Phe  5 16 19
Gly  -1 1 2 23
His  25
Ile  -15 11 14 18 21
Lys  -10
Leu  4 11 12 13 14 16 17 18 20 22
Met  2
Asn  0
Pro  8 9
Gln  -13 -7 -3 24
Arg  -2
Ser  -8 0 1 6 7 15
Thr  -14
Val  3 10 22
Trp  9 10 12 22 23
Tyr  -12 -5 -4

Parameters for score calculation:
---------------------------------
TaxonCode: 10
Calculation of profile:
   number of input sequences: 120
   number of regions: 5
   1: from                :  -15
      to                  :  -12
      weight of region    :  0.0
   2: from                :  -11
      to                  :   -2
      weight of region    :  0.5
   3: from                :   -1
      to                  :    2
      weight of region    :  3.0
   4: from                :    3
      to                  :    9
      weight of region    :  0.5
   5: from                :   10
      to                  :   25
      weight of region    :  1.0
   weight of profile      :  0.6
omega-site will be searched in interval [10..40] from C-terminal

Function 0 = Sum : volume function
   Parameters:
   ScFunc[0].from         =            -1
   ScFunc[0].to           =             2
   ScFunc[0].PropertyName =    HAGECH94_V mean volume of residues
   ScFunc[0].par1         =        410.23 mean volume was calculated
   ScFunc[0].par2         =         61.18 dispersion was calculated
   ScFunc[0].wfunc        =          1.00
   ScFunc[0].distr_type   =       F_GAUSS

Function 1 = Sum3 : volume function for three positions
   Parameters:
   ScFunc[1].from         =            -1 Position 1
   ScFunc[1].to           =             2 Position 2
   ScFunc[1].PropertyName =    HAGECH94_V mean volume of residues
   ScFunc[1].par1         =        311.38 mean volume was calculated
   ScFunc[1].par2         =         55.54 dispersion was calculated
   ScFunc[1].par4         =             1 Position 3
   ScFunc[1].wfunc        =          1.00
   ScFunc[1].distr_type   =       F_GAUSS

Function 2 = Sum2 : volume function for two positions
   Parameters:
   ScFunc[2].from         =            -1 Position 1
   ScFunc[2].to           =             2 Position 2
   ScFunc[2].PropertyName =    HAGECH94_V mean volume of residues
   ScFunc[2].par1         =        218.96 mean volume was calculated
   ScFunc[2].par2         =         43.16 dispersion was calculated
   ScFunc[2].wfunc        =          1.00
   ScFunc[2].distr_type   =       F_GAUSS

Function 3 = PenaltyForBadProfile : penalty for bad Omega-Site
   Parameters:
   ScFunc[3].from         =             0
   ScFunc[3].to           =             2
   ScFunc[3].par1         =          0.10 threshold
   ScFunc[3].par2         =         -4.00 penalty
   ScFunc[3].wfunc        =          1.00

Function 4 = Penalty_Mobility : penalty for more than one residue out of P, T, V, I
   Parameters:
   ScFunc[4].from         =            -1 Position 1
   ScFunc[4].to           =             2 Position 2
   ScFunc[4].PropertyName =    PTVI residues
   ScFunc[4].par1         =         -4.00 penalty
   ScFunc[4].wfunc        =          1.00

Function 5 = C_Position : penalty, if site is outside of interval[from..to] relative to C-terminal
   Parameters:
   ScFunc[5].from         =            17
   ScFunc[5].to           =            31
   ScFunc[5].par1         =          1.00 lambda (x < from)
   ScFunc[5].par2         =          1.00 lambda (x > to)
   ScFunc[5].wfunc        =          4.00
   ScFunc[5].distr_type   =   F_BOLTZMANN

Function 6 = Lower_Average : function for hydrophophilic spacer(for positions 3..8)
   Parameters:
   ScFunc[6].from         =             3 (after omega-site)
   ScFunc[6].to           =             8
   ScFunc[6].PropertyName =    NAKH920105 hydrophobicity scale
   ScFunc[6].par1         =          7.59 mean hydrophobicity for spacer region was calculated
   ScFunc[6].par2         =          2.80 dispersion was calculated
   ScFunc[6].wfunc        =          3.00
   ScFunc[6].distr_type   =       F_GAUSS

Function 7 = Lower_Average : function for spacer volume (mean for positions 3..8)
   Parameters:
   ScFunc[7].from         =             3 (after omega-site)
   ScFunc[7].to           =             8
   ScFunc[7].PropertyName =    HAGECH94_V mean volume of residues
   ScFunc[7].par1         =        129.85 mean volume for spacer region was calculated
   ScFunc[7].par2         =         15.55 dispersion was calculated
   ScFunc[7].wfunc        =          1.00
   ScFunc[7].distr_type   =       F_GAUSS

 Function 8 = Higher_Average: function for hydrophobic region [10..C_end] (for at least the par4=8 last AA)
   Parameters:
   ScFunc[8].from         =            10
   ScFunc[8].to           = SEQUENCE_CEND
   ScFunc[8].PropertyName =    NAKH920105 hydrophobicity scale
   ScFunc[8].par1         =         12.34 mean hydrophobicity for at least the 8 last AA was calculated
   ScFunc[8].par2         =          1.84 dispersion was calculated
   ScFunc[8].par4         =             8 minimal length of hydrophobic region
   ScFunc[8].wfunc        =          1.00
   ScFunc[8].distr_type   =       F_GAUSS

Function 9 = Higher_Average : function for hydrophobic tail [25..C_end](for at least the par4=8 last AA)
   Parameters:
   ScFunc[9].from         =            26 (after profile-end)
   ScFunc[9].to           = SEQUENCE_CEND
   ScFunc[9].PropertyName =    NAKH920105 hydrophobicity scale
   ScFunc[9].par1         =         11.19 mean hydrophobicity for at least the 8 last AA was calculated
   ScFunc[9].par2         =          2.88 dispersion was calculated
   ScFunc[9].par4         =             8 minimal length of tail for calculation of hydrophobicity parameters
   ScFunc[9].wfunc        =          1.00
   ScFunc[9].distr_type   =       F_GAUSS

Function 10 = Sliding_Window : penalty for too short even hydrophobic section
   Parameters:
   ScFunc[10].from         =             9
   ScFunc[10].to           = SEQUENCE_CEND
   ScFunc[10].PropertyName =    NAKH920105 hydrophobicity scale
   ScFunc[10].par1         =          9.00 threshold ( min mean window hydrophobicity)
   ScFunc[10].par2         =        -12.00 penalty
   ScFunc[10].par4         =             4 winlen
   ScFunc[10].par5         =             5 min number of windows one after another
   ScFunc[10].wfunc        =          1.00

Function 11 = PenaltyForBadProfile : penalty for bad hydrophobic tail
   Parameters:
   ScFunc[11].from         =            10
   ScFunc[11].to           =   PROFILE_END
   ScFunc[11].par1         =          0.10 threshold
   ScFunc[11].par2         =        -12.00 penalty
   ScFunc[11].wfunc        =          1.00

Function 12 = Penalty_Lower : penalty, if hydrophobicity in tail < threshold=par1
   Parameters:
   ScFunc[12].from         =            10
   ScFunc[12].to           = SEQUENCE_CEND
   ScFunc[12].par1         =          1.50 minimum of mean hydrophobicity (NAKH920105)
   ScFunc[12].par2         =         -4.00 penalty
   ScFunc[12].par3         =          0.50 threshold for extreme windows
   ScFunc[12].par4         =             3 windowlength for calculation of mean hydrophobicity
   ScFunc[12].wfunc        =          1.00

Function 13 =  LVI_contents : contents of Leu, Val, Ile in hydrophobic tail
   Parameters:
   ScFunc[13].from         =            10
   ScFunc[13].to           = SEQUENCE_CEND
   ScFunc[13].par1         =         30.00 threshold
   ScFunc[13].par2         =        -12.00 penalty
   ScFunc[13].wfunc        =          1.00

Function 14 = SG_Penalty : penalty for too long Ser, Gly - sections (len = par4) in hydrophobic tail
   Parameters:
   ScFunc[14].from         =             9
   ScFunc[14].to           = SEQUENCE_CEND
   ScFunc[14].par1         =        -12.00 penalty
   ScFunc[14].par4         =             3 winlen
   ScFunc[14].wfunc        =          1.00

11.95	0.00	0.00	0.00	0.00	0.00	0.00	-2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.52

ID:

-->end of list of found GPI-sites

   number of found GPI-sites 108
-->ReadSWEntry: End of File
   number of complete entries : 120
   number of failed entries : 0
   number of unselected entries : 49
-->CloseSWFile: Data file closed

# 
# 
# Normal termination of program meta.
# total program time: CPU 0:01:06.48 sec, elapsed time 0:01:16.00 sec
# 

Last modified: 12th June 2002