IMP GPI Lipid Anchor Project IMP-Bioinformatics

The jack-knife-test II over the largest subset of non-homologous sequences only: Metazoa

Contact:
Birgit Eisenhaber (IMP/Austria)
Peer Bork (MDC/EMBL)
Frank Eisenhaber (IMP/Austria)


Prediction Results
How to read the prediction results

# 
# ------------------------------------------------------------------- #
# 
# package *-> meta <-*
# ********************
# 
# name of executable           : meta
# time of program compilation  : Jul 16 1999 (13:14:40)
# time of program execution    : Fri Jul 16 13:18:23 1999
# version of the code          : Revision: 1.15 (Date: 1999/01/28 15:56:41)
# 
ReadAapLib: AAProperty library  opened
Number of entrys in AapLib: <641>
-->All selects were switched on.


Selection parameters:
---------------------
0:     PToken: OC   
       SToken: 
         RExp: METAZOA
    is_SToken: 0
       expect: 1

-->OpenSWFile: Data file <./gpi.learn.sav> opened


-->begin GPI-site evaluations
-->ReadGPILib: GPI library  opened
 INFO> ReadGPILib: VARSPLIC line in entry <UPAR_RAT> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORCA> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORMA> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <CEPU_CHICK> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <DAF_HUMAN> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <NRTR_HUMAN> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <NRTR_MOUSE> .!!
 INFO> ReadGPILib: VARSPLIC line in entry <OPCM_RAT> .!!
number of entries of file 1                   :   169
number of accepted entries of file 1          :   169
total number of entries                       :   169

-->Statistic_confidence of GPILib 1 : 
number of accepted entries                    :   169
number of entries with certain GPI-site       :    40
number of entries with potential GPI-site     :    65
number of entries with GPI-site by similarity :    64

-->GPIStatistic_Length: GPILibNumber = 1
Lmin                :  14 ( entry: PAG1_TRYBB, file: 1 )
Lmax                :  31 ( entry: THY1_MACMU, file: 1 )
deltaL              :   5
number of intervals :   4
interval of length   from     to    number of entries
                 1     14     19                   21
                 2     20     24                   84
                 3     25     29                   53
                 4     30     34                   11
total number of entries                       :   169

-->Statistic_taxonomy of GPILib 1 / total number of entries 169
     1 VIRUSES
   168 EUKARYOTA
   120 ..METAZOA
     5 ....INSECTA
   113 ....VERTEBRATA
     3 ......PISCES
     5 ......AVES
   105 ......MAMMALIA
    55 ........PRIMATES
    10 ..FUNGI
    38 ..PROTOZOA

--> Jack-Knife-Test for largest subset is running!!

-->Calc_EVD_Param: file of values  opened
LinearCorrelation of 23988 data points [x,y]
           r=-0.969276 (P=0.000000)

LinearFit: from 23988 datapoints [x,y] for y=a+bx (23986 degrees of freedom)
           without weights (RMSD) for y (uniform sigma is estimated)
           x mean=-63.309381 (stan.dev.=20.985400)
           y mean=-0.577043 (stan.dev.=1.281476)
           interception a=-4.324257	(siga=0.006469)
           slope        b=-0.059189	(sigb=0.000097)
           correlation  R(siga,sigb)=0.949213

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > statistical validation
        1) total chi2=2383.335462,	P=1.000000e+00 B=-ln(P)/df= 0.000
           (used for weight estimation !)

        2) t-Test for interception a=0: t=-668.496107	P=0.000000e+00
           [-4.345545,-4.302969] for alpha=0.001 (TWO_SIDED, Tna=3.291016)
           [-4.340921,-4.307594] for alpha=0.010 (TWO_SIDED, Tna=2.576050)
           [-4.336936,-4.311578] for alpha=0.050 (TWO_SIDED, Tna=1.960068)

        3) t-Test for slope        b=0: t=-610.284046	P=0.000000e+00
           [-0.059508,-0.058870] for alpha=0.001 (TWO_SIDED, Tna=3.291016)
           [-0.059439,-0.058939] for alpha=0.010 (TWO_SIDED, Tna=2.576050)
           [-0.059379,-0.058999] for alpha=0.050 (TWO_SIDED, Tna=1.960068)

        4) Fisher's test (average of function value versus regression)
           F=372446.616952 (df1=1, df2=23986) P=0.000000e+00

   u: -73.058549 lambda: 0.059189
Thresholds for GPI-anchor selecting:
   A-site: p = 0.0025 score =  28.15
   B-site: p = 0.0050 score =  16.41
   C-site: p = 0.0075 score =   9.54
   D-site: p = 0.0100 score =   4.66
   S-site: p = 0.0175 score =  -4.86
11.95 0.00 0.00 0.00 0.00 0.00 0.00 -2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.36
ID:
LY6E_MOUSE AC: Q64253 Len: 136 1:D 108 Sc: 9.36 Pv: 7.580623e-03
14.07 0.00 0.00 0.00 0.00 0.00 0.00 -6.15 -0.57 -0.16 0.00 0.00 0.00 0.00 0.00 0.00 7.19
ID: TREA_RABIT AC: P19813 Len: 578 1:D 555 Sc: 7.19 Pv: 8.617470e-03
18.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.10 0.00 0.00 0.00 0.00 0.00 18.72
ID: UPAR_RAT AC: P49616 Len: 328 1:B 299 Sc: 18.72 Pv: 4.362735e-03
12.54 -0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.73 0.00 0.00 0.00 0.00 0.00 11.79
ID: CD59_PIG AC: O62680 Len: 123 1:C 99 Sc: 11.79 Pv: 6.567229e-03
14.81 -0.13 -0.22 -0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.05
ID: 5NTD_BOVIN AC: Q05927 Len: 574 1:C 549 Sc: 14.05 Pv: 5.747589e-03
8.40 -0.06 -0.11 -0.22 0.00 0.00 0.00 -6.44 -1.08 -0.92 -0.61 0.00 0.00 0.00 0.00 0.00 -1.06
ID: 5NTD_DISOM AC: P29240 Len: 577 1:I 552 Sc: -1.06 Pv: 1.399861e-02
14.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 14.68
ID: ACES_TORCA AC: P04058 Len: 586 1:C 564 Sc: 14.68 Pv: 5.539778e-03
13.11 -0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.10
ID: AMPM_HELVI AC: Q11000 Len: 1009 1:C 987 Sc: 13.10 Pv: 6.081458e-03
12.45 0.00 0.00 0.00 0.00 0.00 0.00 -1.60 0.00 -0.02 -0.11 0.00 0.00 0.00 0.00 0.00 10.72
ID: AMPM_MANSE AC: Q11001 Len: 990 1:C 968 Sc: 10.72 Pv: 6.997419e-03
7.72 -1.96 -1.32 -0.04 0.00 0.00 0.00 0.00 -0.15 -0.30 0.00 0.00 0.00 0.00 0.00 0.00 3.95
ID: AXO1_HUMAN AC: Q02246 Len: 1040 1:S 1012 Sc: 3.95 Pv: 1.042569e-02
13.92 0.00 0.00 0.00 0.00 0.00 0.00 -0.15 0.00 0.00 -0.25 0.00 0.00 0.00 0.00 0.00 13.52
ID: BM86_BOOMI AC: P20736 Len: 650 1:C 627 Sc: 13.52 Pv: 5.931267e-03
13.82 -0.01 -0.03 -0.07 0.00 0.00 0.00 -0.62 0.00 -0.02 -0.57 0.00 0.00 0.00 0.00 -12.00 0.50
ID: BST1_MOUSE AC: Q64277 Len: 311 1:I 286 Sc: 0.50 Pv: 1.277499e-02
8.17 0.00 0.00 0.00 0.00 0.00 0.00 -2.03 -0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.24
ID: CADD_HUMAN AC: P55290 Len: 713 1:D 691 Sc: 5.24 Pv: 9.665592e-03
15.61 0.00 0.00 0.00 0.00 0.00 0.00 -0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.52
ID: CD24_RAT AC: Q07490 Len: 76 1:C 55 Sc: 15.52 Pv: 5.271677e-03
15.82 -0.17 -0.26 -0.39 0.00 0.00 0.00 -0.21 -0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.20
ID: CD48_RAT AC: P10252 Len: 240 1:C 217 Sc: 14.20 Pv: 5.698169e-03
10.84 0.00 0.00 0.00 0.00 0.00 0.00 -0.03 0.00 -1.44 -0.25 -12.00 0.00 0.00 0.00 0.00 -2.87
ID: CD52_MACFA AC: P32763 Len: 60 1:I 35 Sc: -2.87 Pv: 1.557289e-02
17.81 -0.03 0.00 -0.06 0.00 0.00 0.00 0.00 -0.23 0.00 -0.57 0.00 0.00 0.00 0.00 0.00 16.92
ID: CD59_AOTTR AC: P51447 Len: 128 1:B 102 Sc: 16.92 Pv: 4.853866e-03
20.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.01 -0.90 0.00 0.00 0.00 0.00 0.00 19.18
ID: CD59_PAPSP AC: Q28785 Len: 126 1:B 100 Sc: 19.18 Pv: 4.247587e-03
13.58 0.00 0.00 0.00 0.00 0.00 0.00 -4.15 -0.12 -0.14 -0.41 0.00 0.00 0.00 0.00 0.00 8.75
ID: CD59_RAT AC: P27274 Len: 126 1:D 101 Sc: 8.75 Pv: 7.856642e-03
13.58 0.00 0.00 0.00 0.00 0.00 0.00 -0.02 -0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.37
ID: CNTR_CHICK AC: P51641 Len: 362 1:C 341 Sc: 13.37 Pv: 5.985982e-03
17.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.12 0.00 0.00 0.00 0.00 0.00 0.00 17.65
ID: CNTR_HUMAN AC: P26992 Len: 372 1:B 342 Sc: 17.65 Pv: 4.649047e-03
8.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.77 -0.17 0.00 0.00 0.00 0.00 0.00 7.96
ID: CONN_DROME AC: Q01819 Len: 682 1:D 658 Sc: 7.96 Pv: 8.235076e-03
5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -1.52 -0.11 0.00 0.00 0.00 0.00 0.00 0.00 3.93
ID: DAF1_MOUSE AC: Q61475 Len: 390 1:S 361 Sc: 3.93 Pv: 1.043885e-02
14.10 0.00 0.00 -0.12 0.00 -4.00 0.00 -2.23 0.00 -0.39 0.00 0.00 0.00 0.00 0.00 0.00 7.36
ID: DAF_PONPY AC: P49457 Len: 340 1:D 312 Sc: 7.36 Pv: 8.528276e-03
16.26 0.00 -0.02 -0.42 0.00 0.00 0.00 0.00 -0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.64
ID: FOL1_HUMAN AC: P15328 Len: 257 1:C 234 Sc: 15.64 Pv: 5.232609e-03
11.91 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 -0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.81
ID: FOL2_HUMAN AC: P14207 Len: 255 1:C 230 Sc: 11.81 Pv: 6.562760e-03
12.01 0.00 0.00 -0.12 0.00 -4.00 0.00 -0.16 0.00 -0.06 0.00 0.00 0.00 0.00 0.00 0.00 7.66
ID: FOL2_MOUSE AC: Q05685 Len: 251 1:D 227 Sc: 7.66 Pv: 8.382164e-03
18.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.18 -3.37 0.00 0.00 -8.00 0.00 0.00 6.46
ID: GLYP_HUMAN AC: P35052 Len: 558 1:D 530 Sc: 6.46 Pv: 8.993346e-03
9.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.63 -0.99 0.00 0.00 -4.00 0.00 0.00 3.51
ID: GPCK_MOUSE AC: P51655 Len: 557 1:S 529 Sc: 3.51 Pv: 1.070163e-02
10.05 0.00 0.00 0.00 0.00 0.00 0.00 -0.04 -0.03 -2.02 -1.14 0.00 0.00 -8.00 0.00 0.00 -1.19
ID: HYA1_CAVPO AC: P23613 Len: 529 1:I 499 Sc: -1.19 Pv: 1.411000e-02
7.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.57
ID: HYA1_MACFA AC: P38568 Len: 510 1:D 486 Sc: 7.57 Pv: 8.424552e-03
8.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.13
ID: LACH_SCHAM AC: Q26474 Len: 349 1:D 332 Sc: 8.13 Pv: 8.150805e-03
14.00 -0.22 -0.02 -0.45 0.00 0.00 0.00 -2.97 0.00 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 10.33
ID: LAMP_HUMAN AC: Q13449 Len: 338 1:C 315 Sc: 10.33 Pv: 7.160565e-03
14.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.77
ID: LY6A_MOUSE AC: P05533 Len: 134 1:C 112 Sc: 14.77 Pv: 5.509146e-03
18.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.54
ID: MDP1_HUMAN AC: P16444 Len: 411 1:B 385 Sc: 17.54 Pv: 4.677897e-03
10.44 -2.13 -2.86 -1.34 0.00 0.00 0.00 0.00 -0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30
ID: MDP1_MOUSE AC: P31428 Len: 410 1:S 384 Sc: 3.30 Pv: 1.083427e-02
11.51 0.00 0.00 0.00 0.00 0.00 0.00 -3.52 -1.59 -0.02 0.00 0.00 0.00 0.00 0.00 0.00 6.38
ID: NAR3_HUMAN AC: Q13508 Len: 367 1:D 340 Sc: 6.38 Pv: 9.036728e-03
10.44 -0.94 -1.29 -2.12 0.00 0.00 0.00 0.00 0.00 0.00 -0.69 0.00 0.00 0.00 0.00 0.00 5.40
ID: NART_MOUSE AC: P17981 Len: 287 1:D 258 Sc: 5.40 Pv: 9.575691e-03
5.24 0.00 0.00 -0.05 0.00 0.00 0.00 -1.75 0.00 -0.06 0.00 0.00 0.00 0.00 0.00 0.00 3.39
ID: NCA_HUMAN AC: P40199 Len: 344 1:S 319 Sc: 3.39 Pv: 1.077940e-02
14.69 -0.59 -0.83 -1.34 0.00 0.00 0.00 0.00 0.00 0.00 -0.05 0.00 0.00 0.00 0.00 0.00 11.88
ID: NRT2_RAT AC: P20974 Len: 275 1:C 246 Sc: 11.88 Pv: 6.535621e-03
7.11 -1.43 -1.93 0.00 0.00 0.00 0.00 -0.79 -0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.10
ID: NRTR_CHICK AC: O13157 Len: 465 1:S 445 Sc: 2.10 Pv: 1.162798e-02
11.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.09 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 11.88
ID: NRTR_HUMAN AC: O00451 Len: 464 1:C 440 Sc: 11.88 Pv: 6.535471e-03
8.41 -0.90 -0.73 0.00 0.00 0.00 0.00 -1.72 -0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.90
ID: NRTR_MOUSE AC: O08842 Len: 463 1:D 444 Sc: 4.90 Pv: 9.858736e-03
14.62 -0.23 -0.02 -0.03 0.00 0.00 0.00 -0.06 0.00 -1.50 -0.48 0.00 0.00 0.00 -12.00 0.00 0.30
ID: OPCM_HUMAN AC: Q14982 Len: 345 1:I 322 Sc: 0.30 Pv: 1.292928e-02
11.83 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.19 0.00 0.00 0.00 0.00 0.00 11.63
ID: PPB3_HUMAN AC: P05188 Len: 535 1:C 506 Sc: 11.63 Pv: 6.631870e-03
12.11 -0.01 0.00 0.00 0.00 0.00 0.00 -0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.04
ID: PPBI_BOVIN AC: P19111 Len: 533 1:C 506 Sc: 12.04 Pv: 6.472059e-03
15.00 -0.36 -0.08 -0.12 0.00 0.00 0.00 0.00 -0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.15
ID: PPBI_RAT AC: P15693 Len: 540 1:C 511 Sc: 14.15 Pv: 5.713649e-03
7.65 -0.36 -0.08 -0.12 0.00 0.00 0.00 -0.16 0.00 -12.14 -5.45 -12.00 -12.00 -4.00 -12.00 0.00 -50.67
ID: PPBJ_RAT AC: P51740 Len: 551 1:I 531 Sc: -50.67 Pv: 2.333252e-01
36.05 -0.01 -0.03 -0.04 0.00 0.00 0.00 -0.37 -0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.52
ID: PRIO_CERAT AC: Q95145 Len: 238 1:A 215 Sc: 35.52 Pv: 1.616481e-03
28.94 -0.52 -0.73 -1.17 0.00 0.00 0.00 -0.37 -0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.09
ID: PRIO_MESAU AC: P04273 Len: 254 1:B 231 Sc: 26.09 Pv: 2.823324e-03
29.57 0.00 0.00 0.00 0.00 0.00 0.00 -0.37 -0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.14
ID: PRIO_MOUSE AC: P04925 Len: 254 1:A 231 Sc: 29.14 Pv: 2.357787e-03
9.86 0.00 -0.12 -0.17 0.00 0.00 0.00 0.00 -0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.76
ID: SP63_STRPU AC: Q07929 Len: 470 1:D 446 Sc: 8.76 Pv: 7.853113e-03
-8.05 -5.48 -7.07 -4.25 -4.00 0.00 0.00 0.00 -0.76 0.00 -0.27 0.00 0.00 0.00 0.00 0.00 -29.88
ID: THY1_CHICK AC: Q07212 Len: 160 1:I 133 Sc: -29.88 Pv: 7.470472e-02
17.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.32 -0.23 0.00 0.00 0.00 0.00 0.00 16.69
ID: UPAR_HUMAN AC: Q03405 Len: 335 1:B 305 Sc: 16.69 Pv: 4.917950e-03
12.39 -0.01 -0.03 -0.47 0.00 0.00 0.00 0.00 -0.01 -0.02 0.00 0.00 0.00 0.00 0.00 0.00 11.85
ID: CAH4_HUMAN AC: P22748 Len: 312 1:C 284 Sc: 11.85 Pv: 6.545775e-03
-->end of list of found GPI-sites

   number of found GPI-sites 48
-->ReadSWEntry: End of File
   number of complete entries : 120
   number of too short entries : 0
   number of failed entries : 0
   number of unselected entries : 49
   number of entries belong to the largest subset: 55
   number of entries not belong to the largest subset: 65
-->CloseSWFile: Data file closed

# 
# 
# Normal termination of program meta.
# total program time: CPU 0:23:34.07 sec, elapsed time 0:25:51.00 sec
# 


Last modified: 12th June 2002

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