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GPI Lipid Anchor Project |
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The self-consistency-test of the learning set for Protozoa
Contact:
Birgit Eisenhaber (IMP/Austria)
Peer Bork (MDC/EMBL)
Frank Eisenhaber (IMP/Austria)
Description of Prediction Function
Prediction Results
How to read the prediction results
#
# ------------------------------------------------------------------- #
#
# package *-> proto <-*
# *********************
#
# name of executable : proto
# time of program compilation : Apr 14 1999 (15:43:37)
# time of program execution : Wed Apr 14 15:56:51 1999
# version of the code : Revision: 1.15 (Date: 1999/01/28 15:56:41)
#
ReadAapLib: AAProperty library opened
Number of entrys in AapLib: <641>
-->All selects were switched on.
Selection parameters:
---------------------
0: PToken: OC
SToken:
RExp: PROTOZOA
is_SToken: 0
expect: 1
-->OpenSWFile: Data file <./gpi.learn.sav> opened
-->begin GPI-site evaluations
-->ReadGPILib: GPI library opened
INFO> ReadGPILib: VARSPLIC line in entry <UPAR_RAT> .!!
INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORCA> .!!
INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORMA> .!!
INFO> ReadGPILib: VARSPLIC line in entry <CEPU_CHICK> .!!
INFO> ReadGPILib: VARSPLIC line in entry <DAF_HUMAN> .!!
INFO> ReadGPILib: VARSPLIC line in entry <NRTR_HUMAN> .!!
INFO> ReadGPILib: VARSPLIC line in entry <NRTR_MOUSE> .!!
INFO> ReadGPILib: VARSPLIC line in entry <OPCM_RAT> .!!
number of entries of file 1 : 169
number of accepted entries of file 1 : 169
total number of entries : 169
-->Statistic_confidence of GPILib 1 :
number of accepted entries : 169
number of entries with certain GPI-site : 40
number of entries with potential GPI-site : 65
number of entries with GPI-site by similarity : 64
-->GPIStatistic_Length: GPILibNumber = 1
Lmin : 14 ( entry: PAG1_TRYBB, file: 1 )
Lmax : 31 ( entry: THY1_MACMU, file: 1 )
deltaL : 5
number of intervals : 4
interval of length from to number of entries
1 14 19 21
2 20 24 84
3 25 29 53
4 30 34 11
total number of entries : 169
-->Statistic_taxonomy of GPILib 1 / total number of entries 169
1 VIRIDAE
168 EUKARYOTA
120 ..METAZOA
5 ....INSECTA
113 ....VERTEBRATA
3 ......PISCES
5 ......AVES
105 ......MAMMALIA
55 ........PRIMATES
10 ..FUNGI
38 ..PROTOZOA
-->Calc_EVD_Param: file of values opened
LinearCorrelation of 1061 data points [x,y]
r=-0.975986 (P=0.000000)
LinearFit: from 1061 datapoints [x,y] for y=a+bx (1059 degrees of freedom)
without weights (RMSD) for y (uniform sigma is estimated)
x mean=-75.462328 (stan.dev.=24.061508)
y mean=-0.574634 (stan.dev.=1.269734)
interception a=-4.461182 (siga=0.027977)
slope b=-0.051503 (sigb=0.000353)
correlation R(siga,sigb)=0.952782
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > statistical validation
1) total chi2=81.090823, P=1.000000e+00 B=-ln(P)/df= 0.000
(used for weight estimation !)
2) t-Test for interception a=0: t=-159.459749 P=0.000000e+00
[-4.553500,-4.368863] for alpha=0.001 (TWO_SIDED, Tna=3.299805)
[-4.533376,-4.388987] for alpha=0.010 (TWO_SIDED, Tna=2.580505)
[-4.516078,-4.406285] for alpha=0.050 (TWO_SIDED, Tna=1.962204)
3) t-Test for slope b=0: t=-145.804769 P=0.000000e+00
[-0.052669,-0.050338] for alpha=0.001 (TWO_SIDED, Tna=3.299805)
[-0.052415,-0.050592] for alpha=0.010 (TWO_SIDED, Tna=2.580505)
[-0.052196,-0.050810] for alpha=0.050 (TWO_SIDED, Tna=1.962204)
4) Fisher's test (average of function value versus regression)
F=21259.030543 (df1=1, df2=1059) P=0.000000e+00
u: -86.619580 lambda: 0.051503
Thresholds for GPI-anchor selecting:
A-site: p = 0.0025 score = 29.69
B-site: p = 0.0050 score = 16.21
C-site: p = 0.0075 score = 8.31
D-site: p = 0.0100 score = 2.70
S-site: p = 0.0175 score = -8.24
-->All flags of selected entries were switched on.
-->Switch_Off_Tax: number of entries before procedure : 169
-->Flags of all entries except PROTOZOA switched off
-->Switch_Off_Tax: number of entries after procedure : 38
-->Switch_Off_Len: number of entries before procedure : 38
-->Flags of all entries with AALen-GPIPos > 31 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 37
possible largest subset found: Q = 29
possible largest subset found: Q = 19
largest subset found: q = 19
number of 0's in found largest subset: 0
-->Mean and Dispersion of property <NAKH920105> from 3 to 8
Mean: 7.426140
Dispersion: 2.057393
-->Mean and Dispersion of property <NAKH920105> from 10 to SEQUENCE_CEND
Mean: 12.707411
Dispersion: 2.079704
-->Mean and Dispersion of property <NAKH920105> from 26 to SEQUENCE_CEND
Mean: 12.954671
Dispersion: 1.923591
-->Mean and Dispersion of property <HAGECH94_V> from 3 to 8
Mean: 138.192105
Dispersion: 17.443998
-->Mean and Dispersion of property <HAGECH94_V> at position(s) -1 0 1 2
number of selected entries: 19
Mean : 418.015789
Dispersion: 53.808212
-->Mean and Dispersion of property <HAGECH94_V> at position(s) -1 1 2
number of selected entries: 19
Mean : 317.368421
Dispersion: 49.519806
-->Mean and Dispersion of property <HAGECH94_V> at position(s) -1 2
number of selected entries: 19
Mean : 211.873684
Dispersion: 43.480977
-->All flags of selected entries were switched on.
-->Switch_Off_Tax: number of entries before procedure : 169
-->Flags of all entries except PROTOZOA switched off
-->Switch_Off_Tax: number of entries after procedure : 38
-->Switch_Off_Len: number of entries before procedure : 38
-->Flags of all entries with AALen-GPIPos > 31 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 37
NSubFam = 6
Profile:
Ala
-3.8 -0.1 -3.6 -0.1 -0.9 -0.9 -0.7 -0.7 -0.8 0.5 0.8 -3.8 0.1 -0.6 -3.6
0.1 0.2 1.4 0.5 -0.6 -0.6 -0.7 -0.5 0.8 -3.7 1.3 0.6 0.5 0.9 1.1
0.5 1.4 1.3 0.6 1.4 1.3 0.8 0.9 0.2 1.6 -2.5
Cys
1.7 1.7 0.7 1.3 -3.6 -3.7 2.3 0.7 -3.7 -3.5 -3.4 0.8 -3.5 2.7 0.8
-3.9 -3.7 -3.8 -3.4 -3.4 -3.6 -3.7 -3.5 -3.6 -3.7 -3.5 -3.6 -3.7 -3.7 -3.8
-3.8 0.9 -3.7 -3.6 -3.7 -3.6 1.2 -3.5 -3.2 -2.6 -2.5
Asp
0.7 -0.4 -0.3 0.3 0.6 0.7 0.5 0.9 -3.7 0.4 -3.4 -0.3 1.2 -0.2 -0.2
1.5 0.6 0.0 -3.4 -3.4 -3.6 -3.7 -3.5 -3.6 -3.7 -3.5 -3.6 -3.7 -3.7 -3.8
-0.2 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Glu
0.5 1.2 0.3 1.2 0.1 0.8 0.3 0.7 -0.5 1.7 0.0 1.6 0.3 -0.2 -3.6
-3.9 -3.7 -3.8 -3.4 -3.4 -3.6 -3.7 -3.5 -3.6 -3.7 -3.5 -3.6 -3.7 -3.7 -3.8
-3.8 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Phe
-3.8 -3.8 -3.6 -3.6 -3.6 -3.7 -3.5 -3.5 -3.7 -3.5 -3.4 -3.8 -3.5 -3.4 -3.6
-3.9 0.2 -3.8 1.7 -3.4 -3.6 -3.7 0.2 -3.6 2.0 0.1 0.9 0.1 0.1 1.3
0.1 1.5 1.5 2.2 -3.7 0.4 1.1 1.7 2.6 -2.6 2.5
Gly
0.4 1.0 -0.6 -0.7 0.7 0.6 -0.6 0.6 0.5 -3.5 0.9 0.1 -0.5 1.0 1.3
0.7 0.9 -3.8 0.3 0.2 0.2 -3.7 0.7 -3.6 -0.5 -3.5 -0.4 -3.7 -3.7 -3.8
-3.8 -0.5 -0.5 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
His
-3.8 -3.8 0.6 -3.6 -3.6 -3.7 0.6 -3.5 -3.7 -3.5 -3.4 -3.8 0.7 -3.4 -3.6
-3.9 -3.7 -3.8 -3.4 0.7 -3.6 0.6 -3.5 -3.6 -3.7 -3.5 -3.6 -3.7 -3.7 0.7
-3.8 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 1.1 -3.2 -2.6 -2.5
Ile
-3.8 -3.8 -3.6 -3.6 -3.6 -3.7 -3.5 -0.4 -3.7 -0.3 -0.3 -0.3 -3.5 -3.4 -3.6
-3.9 -3.7 -3.8 1.3 -0.2 0.9 -0.3 -3.5 -0.3 -0.2 -3.5 -0.2 1.0 0.5 0.4
-3.8 0.5 0.4 0.0 -3.7 -3.6 -3.8 0.9 -3.2 -2.6 -2.5
Lys
0.5 0.8 1.4 0.1 0.1 0.9 0.3 1.0 0.3 0.4 0.3 0.7 0.5 -3.4 1.1
-3.9 -3.7 -3.8 -3.4 -0.3 0.4 0.8 1.8 0.5 -3.7 -3.5 -3.6 -3.7 -3.7 -3.8
-3.8 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Leu
-3.8 -0.9 -3.6 -3.6 -3.6 -3.7 -3.5 -3.5 -3.7 -3.5 -0.8 -3.8 -3.5 -0.7 -3.6
-3.9 -3.7 -0.6 -0.7 1.3 0.7 -3.7 -3.5 -0.8 1.1 0.7 1.5 0.7 0.4 0.4
1.5 0.9 0.6 1.2 0.5 1.6 1.9 1.3 0.0 0.7 1.6
Met
-3.8 -3.8 -3.6 -3.6 -3.6 -3.7 -3.5 -3.5 -3.7 -3.5 0.5 -3.8 -3.5 -3.4 -3.6
-3.9 -3.7 -3.8 -3.4 -3.4 -3.6 -3.7 0.6 -3.6 -3.7 -3.5 -3.6 1.2 0.6 -3.8
-3.8 0.6 -3.7 -3.6 1.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Asn
-3.8 0.5 -0.1 0.5 -0.3 0.9 1.0 -3.5 0.6 -3.5 0.9 1.0 0.0 0.0 -3.6
1.4 1.3 -3.8 -3.4 -3.4 -3.6 1.5 -3.5 -0.1 -3.7 -3.5 -3.6 -3.7 -3.7 -3.8
-3.8 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Pro
1.0 -3.8 1.0 -0.4 1.4 1.0 1.1 -0.3 1.3 -3.5 0.8 -3.8 -0.1 -3.4 1.2
-3.9 -3.7 -3.8 -0.1 -0.1 -3.6 -3.7 -3.5 0.9 1.1 0.6 -3.6 -3.7 -3.7 -3.8
-0.2 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Gln
-0.2 -3.8 0.7 -3.6 0.9 -3.7 0.0 -3.5 1.0 0.0 -3.4 -3.8 0.1 -3.4 0.1
-3.9 -3.7 -3.8 -3.4 -3.4 -3.6 -3.7 -3.5 1.5 -3.7 -3.5 -3.6 -3.7 -3.7 -3.8
-3.8 -3.8 -3.7 -3.6 0.3 0.3 -3.8 -3.5 0.9 1.6 -2.5
Arg
-3.8 -3.8 -0.4 0.2 -0.6 -0.5 -3.5 -3.5 -3.7 -0.4 -3.4 -3.8 -0.3 -3.4 0.4
-3.9 -3.7 -3.8 -0.2 -3.4 0.4 0.3 -0.2 -3.6 0.4 -0.3 -3.6 -3.7 -3.7 -3.8
-3.8 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Ser
0.0 -3.8 -3.6 0.9 0.7 -3.7 0.1 0.5 0.5 0.2 -0.6 -0.1 -3.5 0.3 0.3
1.6 1.5 2.1 0.6 0.2 -3.6 1.3 0.3 1.1 -3.7 1.0 -0.4 1.4 0.2 -0.5
1.4 -3.8 -0.5 -0.3 -0.3 -0.2 -3.8 -3.5 -3.2 -2.6 -2.5
Thr
1.0 0.9 0.9 0.8 0.6 0.9 0.1 0.7 0.3 0.8 0.8 1.3 1.6 0.9 -0.3
-3.9 0.5 -3.8 0.5 0.8 1.1 0.8 1.0 0.3 -0.3 -0.3 -3.6 -0.3 0.8 -3.8
-3.8 -3.8 0.3 -3.6 -3.7 -0.1 -3.8 0.1 -3.2 1.2 -2.5
Val
0.4 -3.8 0.1 -3.6 -3.6 -0.7 -3.5 0.1 -3.7 -0.5 -3.4 -3.8 -3.5 0.3 -0.5
-3.9 -3.7 -3.8 -3.4 0.7 1.0 0.2 -0.3 -3.6 -0.4 -0.4 -0.4 0.2 1.4 1.1
-0.5 -0.4 0.6 -0.2 1.4 -3.6 -3.8 -3.5 1.0 -2.6 -2.5
Trp
-3.8 -3.8 -3.6 -3.6 -3.6 -3.7 -3.5 -3.5 2.5 -3.5 -3.4 -3.8 -3.5 -3.4 -3.6
-3.9 -3.7 -3.8 -3.4 -3.4 -3.6 -3.7 -3.5 -3.6 -3.7 -3.5 2.3 -3.7 -3.7 -3.8
-3.8 -3.8 -3.7 1.4 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
Tyr
-3.8 -3.8 -3.6 -3.6 -3.6 -3.7 -3.5 -3.5 -3.7 -3.5 -3.4 -3.8 -3.5 -3.4 -3.6
-3.9 -3.7 -3.8 -3.4 -3.4 -3.6 -3.7 -3.5 -3.6 -3.7 0.3 -3.6 -3.7 -3.7 1.0
-3.8 -3.8 -3.7 -3.6 -3.7 -3.6 -3.8 -3.5 -3.2 -2.6 -2.5
ConsensSequence: t e k e p e c k p e a e t c g s s S f l l s k s f a l s v a l a a f a l L l F a f
Positions with profile component > 1.0 for all amino acid types
Ala 2 10 14 16 17 19 20 24
Cys -15 -14 -12 -9 -2 21
Asp -3 0
Glu -14 -12 -6 -4
Phe 3 9 14 16 17 18 21 22 23 25
Gly -1
His 22
Ile 3
Lys -13 -8 -1 7
Leu 4 9 11 15 18 20 21 22 25
Met 12 19
Asn 0 1 6
Pro -13 -11 -10 -9 -7 -1 9
Gln -7 8 24
Arg
Ser 0 1 2 6 8 12 15
Thr -4 -3 5 24
Val 5 13 14 19 23
Trp -7 11 18
Tyr
Parameters for score calculation:
---------------------------------
TaxonCode: 40
Calculation of profile:
number of input sequences: 37
number of regions: 5
1: from : -15
to : -12
weight of region : 0.0
2: from : -11
to : -2
weight of region : 0.5
3: from : -1
to : 2
weight of region : 3.0
4: from : 3
to : 9
weight of region : 0.5
5: from : 10
to : 25
weight of region : 1.0
weight of profile : 0.6
omega-site will be searched in interval [10..40] from C-terminal
Function 0 = Sum : volume function
Parameters:
ScFunc[0].from = -1
ScFunc[0].to = 2
ScFunc[0].PropertyName = HAGECH94_V mean volume of residues
ScFunc[0].par1 = 418.02 mean volume was calculated
ScFunc[0].par2 = 53.81 dispersion was calculated
ScFunc[0].wfunc = 1.00
ScFunc[0].distr_type = F_GAUSS
Function 1 = Sum3 : volume function for three positions
Parameters:
ScFunc[1].from = -1 Position 1
ScFunc[1].to = 0 Position 2
ScFunc[1].PropertyName = HAGECH94_V mean volume of residues
ScFunc[1].par1 = 317.37 mean volume was calculated
ScFunc[1].par2 = 49.52 dispersion was calculated
ScFunc[1].par4 = 1 Position 3
ScFunc[1].wfunc = 1.00
ScFunc[1].distr_type = F_GAUSS
Function 2 = Sum2 : volume function for two positions
Parameters:
ScFunc[2].from = -1 Position 1
ScFunc[2].to = 1 Position 2
ScFunc[2].PropertyName = HAGECH94_V mean volume of residues
ScFunc[2].par1 = 211.87 mean volume was calculated
ScFunc[2].par2 = 43.48 dispersion was calculated
ScFunc[2].wfunc = 1.00
ScFunc[2].distr_type = F_GAUSS
Function 3 = PenaltyForBadProfile : penalty for bad Omega-Site
Parameters:
ScFunc[3].from = 0
ScFunc[3].to = 2
ScFunc[3].par1 = 0.10 threshold
ScFunc[3].par2 = -4.00 penalty
ScFunc[3].wfunc = 1.00
Function 4 = Penalty_Mobility : penalty for more than one residue out of P, T, V, I
Parameters:
ScFunc[4].from = -1 Position 1
ScFunc[4].to = 2 Position 2
ScFunc[4].PropertyName = PTVI residues
ScFunc[4].par1 = -4.00 penalty
ScFunc[4].wfunc = 1.00
Function 5 = C_Position : penalty, if site is outside of interval[from..to] relative to C-terminal
Parameters:
ScFunc[5].from = 17
ScFunc[5].to = 31
ScFunc[5].par1 = 1.00 lambda (x < from)
ScFunc[5].par2 = 1.00 lambda (x > to)
ScFunc[5].wfunc = 4.00
ScFunc[5].distr_type = F_BOLTZMANN
Function 6 = Lower_Average : function for hydrophophilic spacer(for positions 3..8)
Parameters:
ScFunc[6].from = 3 (after omega-site)
ScFunc[6].to = 8
ScFunc[6].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[6].par1 = 7.43 mean hydrophobicity for spacer region was calculated
ScFunc[6].par2 = 2.06 dispersion was calculated
ScFunc[6].wfunc = 3.00
ScFunc[6].distr_type = F_GAUSS
Function 7 = Lower_Average : function for spacer volume (mean for positions 3..8)
Parameters:
ScFunc[7].from = 3 (after omega-site)
ScFunc[7].to = 8
ScFunc[7].PropertyName = HAGECH94_V mean volume of residues
ScFunc[7].par1 = 138.19 mean volume for spacer region was calculated
ScFunc[7].par2 = 17.44 dispersion was calculated
ScFunc[7].wfunc = 1.00
ScFunc[7].distr_type = F_GAUSS
Function 8 = Higher_Average: function for hydrophobic region [10..C_end] (for at least the par4=8 last AA)
Parameters:
ScFunc[8].from = 10
ScFunc[8].to = SEQUENCE_CEND
ScFunc[8].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[8].par1 = 12.71 mean hydrophobicity for at least the 8 last AA was calculated
ScFunc[8].par2 = 2.08 dispersion was calculated
ScFunc[8].par4 = 8 minimal length of hydrophobic region
ScFunc[8].wfunc = 1.00
ScFunc[8].distr_type = F_GAUSS
Function 9 = Higher_Average : function for hydrophobic tail [25..C_end](for at least the par4=8 last AA)
Parameters:
ScFunc[9].from = 26 (after profile-end)
ScFunc[9].to = SEQUENCE_CEND
ScFunc[9].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[9].par1 = 12.95 mean hydrophobicity for at least the 8 last AA was calculated
ScFunc[9].par2 = 1.92 dispersion was calculated
ScFunc[9].par4 = 8 minimal length of tail for calculation of hydrophobicity parameters
ScFunc[9].wfunc = 1.00
ScFunc[9].distr_type = F_GAUSS
Function 10 = Sliding_Window : penalty for too short even hydrophobic section
Parameters:
ScFunc[10].from = 9
ScFunc[10].to = SEQUENCE_CEND
ScFunc[10].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[10].par1 = 9.00 threshold ( min mean window hydrophobicity)
ScFunc[10].par2 = -12.00 penalty
ScFunc[10].par4 = 4 winlen
ScFunc[10].par5 = 5 min number of windows one after another
ScFunc[10].wfunc = 1.00
Function 11 = PenaltyForBadProfile : penalty for bad hydrophobic tail
Parameters:
ScFunc[11].from = 10
ScFunc[11].to = PROFILE_END
ScFunc[11].par1 = 0.10 threshold
ScFunc[11].par2 = -12.00 penalty
ScFunc[11].wfunc = 1.00
Function 12 = Penalty_Lower : penalty, if hydrophobicity in tail < threshold=par1
Parameters:
ScFunc[12].from = 10
ScFunc[12].to = SEQUENCE_CEND
ScFunc[12].par1 = 1.50 minimum of mean hydrophobicity (NAKH920105)
ScFunc[12].par2 = -4.00 penalty
ScFunc[12].par3 = 0.50 threshold for extreme windows
ScFunc[12].par4 = 3 windowlength for calculation of mean hydrophobicity
ScFunc[12].wfunc = 1.00
Function 13 = LVI_contents : contents of Leu, Val, Ile in hydrophobic tail
Parameters:
ScFunc[13].from = 10
ScFunc[13].to = SEQUENCE_CEND
ScFunc[13].par1 = 30.00 threshold
ScFunc[13].par2 = -12.00 penalty
ScFunc[13].wfunc = 1.00
Function 14 = SG_Penalty : penalty for too long Ser, Gly - sections (len = par4) in hydrophobic tail
Parameters:
ScFunc[14].from = 9
ScFunc[14].to = SEQUENCE_CEND
ScFunc[14].par1 = -12.00 penalty
ScFunc[14].par4 = 3 winlen
ScFunc[14].wfunc = 1.00
| 18.95 | 0.00 | 0.00 | -0.21 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.23 | -0.17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 18.34 |
ID: G13B_DICDI AC: P34116 Len: 734 1:B 708 Sc: 18.34
| 24.14 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 24.14 |
ID: GP63_LEIMA AC: P08148 Len: 602 1:B 577 Sc: 24.14
| 29.52 | -0.23 | -0.38 | -0.27 | 0.00 | 0.00 | 0.00 | -1.34 | -0.52 | -0.08 | -0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 26.60 |
ID: VSG7_TRYBR AC: P02898 Len: 467 1:B 444 Sc: 26.60
| 23.38 | 0.00 | 0.00 | -0.01 | 0.00 | 0.00 | 0.00 | -0.66 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 22.71 |
ID: CSA_DICDI AC: P08796 Len: 514 1:B 492 Sc: 22.71
| 21.63 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.04 | -0.41 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.18 |
ID: G13A_DICDI AC: P34115 Len: 730 1:B 708 Sc: 21.18
| 23.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 23.59 |
ID: GP63_LEICH AC: P15706 Len: 599 1:B 574 Sc: 23.59
| 23.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 23.59 |
ID: GP63_LEIDO AC: P23223 Len: 590 1:B 565 Sc: 23.59
| 14.08 | -1.17 | -1.76 | -3.11 | 0.00 | 0.00 | 0.00 | -2.18 | 0.00 | 0.00 | -0.14 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 5.71 |
ID: GP85_TRYCR AC: Q03877 Len: 714 1:D 691 Sc: 5.71
| 18.07 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 17.47 |
ID: MSA1_SARMU AC: Q01416 Len: 280 1:B 256 Sc: 17.47
| -13.30 | -0.30 | 0.00 | 0.00 | -4.00 | 0.00 | 0.00 | 0.00 | -0.02 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -17.62 |
ID: PAG1_TRYBB AC: Q01889 Len: 405 1:N 388 Sc: -17.62
$ site was 391
| 19.75 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.11 | 0.00 | -0.60 | -0.26 | 0.00 | 0.00 | 0.00 | -12.00 | 0.00 | 5.78 |
ID: PARA_TRYBB AC: P18764 Len: 114 1:D 92 Sc: 5.78
| 17.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.11 | 0.00 | -0.46 | -0.15 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 15.87 |
ID: PARB_TRYBB AC: P09791 Len: 129 1:C 107 Sc: 15.87
| 19.91 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.11 | 0.00 | -0.56 | -0.26 | 0.00 | 0.00 | 0.00 | -12.00 | 0.00 | 5.97 |
ID: PARC_TRYBB AC: Q06084 Len: 145 1:D 123 Sc: 5.97
| 23.76 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.12 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 23.64 |
ID: PONA_DICDI AC: P54660 Len: 143 1:B 118 Sc: 23.64
| 16.51 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.44 | 0.00 | -0.22 | -1.28 | -12.00 | 0.00 | 0.00 | 0.00 | 0.00 | 2.57 |
ID: PSA_DICDI AC: P12729 Len: 168 1:I 147 Sc: 2.57
| 32.62 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -4.21 | -0.31 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 25.97 |
ID: VSA1_TRYBB AC: P06015 Len: 503 1:B 480 Sc: 25.97
| 33.91 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -0.85 | -0.34 | -0.08 | -0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 30.43 |
ID: VSA8_TRYBB AC: P06017 Len: 115 1:A 92 Sc: 30.43
| 32.23 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -1.41 | -0.45 | -0.05 | -0.32 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 27.87 |
ID: VSAC_TRYBB AC: P06016 Len: 482 1:B 459 Sc: 27.87
| 21.28 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.28 |
ID: VSE2_TRYBR AC: P26335 Len: 55 1:B 38 Sc: 21.28
| 23.46 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.03 | -0.44 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 22.99 |
ID: VSG2_TRYEQ AC: P20950 Len: 457 1:B 440 Sc: 22.99
| 28.10 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -0.85 | -0.34 | -2.54 | -5.29 | -12.00 | 0.00 | 0.00 | -12.00 | 0.00 | -7.06 |
ID: VSG4_TRYBR AC: P02897 Len: 476 1:I 457 Sc: -7.06
| 17.32 | -0.12 | -0.22 | -0.52 | 0.00 | 0.00 | 0.00 | -5.63 | -0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 10.71 |
ID: VSI1_TRYBB AC: P26326 Len: 471 1:C 454 Sc: 10.71
| 21.28 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.28 |
ID: VSI2_TRYBB AC: P26327 Len: 479 1:B 462 Sc: 21.28
| 23.88 | -0.63 | -0.91 | -0.53 | 0.00 | 0.00 | 0.00 | 0.00 | -0.76 | -0.17 | -0.31 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 20.58 |
ID: VSI3_TRYBB AC: P26328 Len: 532 1:B 509 Sc: 20.58
$ site was 511
| 33.42 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -0.23 | -0.06 | -0.08 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 30.91 |
ID: VSI4_TRYBB AC: P26329 Len: 514 1:A 491 Sc: 30.91
| 32.84 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -0.23 | -0.06 | -0.08 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 30.33 |
ID: VSI5_TRYBB AC: P26330 Len: 507 1:A 484 Sc: 30.33
| 33.90 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -0.02 | -0.90 | -0.08 | -0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 30.68 |
ID: VSI6_TRYBB AC: P06014 Len: 503 1:A 480 Sc: 30.68
| 22.15 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.07 | -0.30 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 20.77 |
ID: VSIB_TRYBB AC: P07208 Len: 471 1:B 454 Sc: 20.77
| 24.98 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.84 | -0.50 | -0.64 | -12.00 | 0.00 | 0.00 | 0.00 | 0.00 | 11.00 |
ID: VSM0_TRYBB AC: P07209 Len: 72 1:C 50 Sc: 11.00
| 22.56 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.93 | -0.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.05 |
ID: VSM1_TRYBB AC: P26331 Len: 492 1:B 475 Sc: 21.05
| 21.71 | 0.00 | 0.00 | -0.03 | 0.00 | 0.00 | 0.00 | 0.00 | -0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.55 |
ID: VSM2_TRYBB AC: P26332 Len: 476 1:B 459 Sc: 21.55
| 31.92 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -1.41 | -0.45 | -0.03 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 27.89 |
ID: VSM4_TRYBB AC: P02896 Len: 526 1:B 503 Sc: 27.89
| 29.23 | -0.63 | -0.91 | -0.53 | 0.00 | 0.00 | 0.00 | 0.00 | -0.18 | -0.74 | -0.45 | -12.00 | 0.00 | 0.00 | -12.00 | 0.00 | 1.80 |
ID: VSM5_TRYBB AC: P26333 Len: 474 1:I 451 Sc: 1.80
| 29.97 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -2.92 | -0.57 | -0.08 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 24.25 |
ID: VSM5_TRYBR AC: P21840 Len: 517 1:B 495 Sc: 24.25
| 32.59 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -1.41 | -0.45 | -0.03 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 28.56 |
ID: VSM6_TRYBB AC: P26334 Len: 529 1:B 506 Sc: 28.56
| 20.32 | 0.00 | 0.00 | -0.03 | 0.00 | 0.00 | 0.00 | 0.00 | -0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 20.17 |
ID: VSWA_TRYBR AC: P20946 Len: 471 1:B 454 Sc: 20.17
| 19.30 | 0.00 | 0.00 | -0.03 | 0.00 | 0.00 | 0.00 | 0.00 | -0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 19.14 |
ID: VSWB_TRYBR AC: P20947 Len: 487 1:B 470 Sc: 19.14
| 18.03 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.24 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 17.78 |
ID: VSY1_TRYCO AC: P20948 Len: 419 1:B 400 Sc: 17.78
-->end of list of found GPI-sites
number of found GPI-sites 34
-->ReadSWEntry: End of File
number of complete entries : 38
number of failed entries : 0
number of unselected entries : 131
-->CloseSWFile: Data file closed
#
#
# Normal termination of program proto.
# total program time: CPU 0:00:16.45 sec, elapsed time 0:00:20.00 sec
#
Last modified: 12th June 2002