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GPI Lipid Anchor Project |
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The jack-knife-test I over the whole learning set: Protozoa
Contact:
Birgit Eisenhaber (IMP/Austria)
Peer Bork (MDC/EMBL)
Frank Eisenhaber (IMP/Austria)
Prediction Results
How to read the prediction results
#
# ------------------------------------------------------------------- #
#
# package *-> proto <-*
# *********************
#
# name of executable : proto
# time of program compilation : Apr 15 1999 (15:10:29)
# time of program execution : Thu Apr 15 15:14:01 1999
# version of the code : Revision: 1.15 (Date: 1999/01/28 15:56:41)
#
ReadAapLib: AAProperty library opened
Number of entrys in AapLib: <641>
-->All selects were switched on.
Selection parameters:
---------------------
0: PToken: OC
SToken:
RExp: PROTOZOA
is_SToken: 0
expect: 1
-->OpenSWFile: Data file <./gpi.learn.sav> opened
-->begin GPI-site evaluations
-->ReadGPILib: GPI library opened
INFO> ReadGPILib: VARSPLIC line in entry <UPAR_RAT> .!!
INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORCA> .!!
INFO> ReadGPILib: VARSPLIC line in entry <ACES_TORMA> .!!
INFO> ReadGPILib: VARSPLIC line in entry <CEPU_CHICK> .!!
INFO> ReadGPILib: VARSPLIC line in entry <DAF_HUMAN> .!!
INFO> ReadGPILib: VARSPLIC line in entry <NRTR_HUMAN> .!!
INFO> ReadGPILib: VARSPLIC line in entry <NRTR_MOUSE> .!!
INFO> ReadGPILib: VARSPLIC line in entry <OPCM_RAT> .!!
number of entries of file 1 : 169
number of accepted entries of file 1 : 169
total number of entries : 169
-->Statistic_confidence of GPILib 1 :
number of accepted entries : 169
number of entries with certain GPI-site : 40
number of entries with potential GPI-site : 65
number of entries with GPI-site by similarity : 64
-->GPIStatistic_Length: GPILibNumber = 1
Lmin : 14 ( entry: PAG1_TRYBB, file: 1 )
Lmax : 31 ( entry: THY1_MACMU, file: 1 )
deltaL : 5
number of intervals : 4
interval of length from to number of entries
1 14 19 21
2 20 24 84
3 25 29 53
4 30 34 11
total number of entries : 169
-->Statistic_taxonomy of GPILib 1 / total number of entries 169
1 VIRIDAE
168 EUKARYOTA
120 ..METAZOA
5 ....INSECTA
113 ....VERTEBRATA
3 ......PISCES
5 ......AVES
105 ......MAMMALIA
55 ........PRIMATES
10 ..FUNGI
38 ..PROTOZOA
--> Jack-Knife-Test is running!!
-->Calc_EVD_Param: file of values opened
LinearCorrelation of 1061 data points [x,y]
r=-0.975986 (P=0.000000)
LinearFit: from 1061 datapoints [x,y] for y=a+bx (1059 degrees of freedom)
without weights (RMSD) for y (uniform sigma is estimated)
x mean=-75.462328 (stan.dev.=24.061508)
y mean=-0.574634 (stan.dev.=1.269734)
interception a=-4.461182 (siga=0.027977)
slope b=-0.051503 (sigb=0.000353)
correlation R(siga,sigb)=0.952782
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > statistical validation
1) total chi2=81.090823, P=1.000000e+00 B=-ln(P)/df= 0.000
(used for weight estimation !)
2) t-Test for interception a=0: t=-159.459749 P=0.000000e+00
[-4.553500,-4.368863] for alpha=0.001 (TWO_SIDED, Tna=3.299805)
[-4.533376,-4.388987] for alpha=0.010 (TWO_SIDED, Tna=2.580505)
[-4.516078,-4.406285] for alpha=0.050 (TWO_SIDED, Tna=1.962204)
3) t-Test for slope b=0: t=-145.804769 P=0.000000e+00
[-0.052669,-0.050338] for alpha=0.001 (TWO_SIDED, Tna=3.299805)
[-0.052415,-0.050592] for alpha=0.010 (TWO_SIDED, Tna=2.580505)
[-0.052196,-0.050810] for alpha=0.050 (TWO_SIDED, Tna=1.962204)
4) Fisher's test (average of function value versus regression)
F=21259.030543 (df1=1, df2=1059) P=0.000000e+00
u: -86.619580 lambda: 0.051503
Thresholds for GPI-anchor selecting:
A-site: p = 0.0025 score = 29.69
B-site: p = 0.0050 score = 16.21
C-site: p = 0.0075 score = 8.31
D-site: p = 0.0100 score = 2.70
S-site: p = 0.0175 score = -8.24
| 17.68 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.95 | 0.00 | -0.01 | -0.16 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 16.56 |
ID: G13B_DICDI AC: P34116 Len: 734 1:B 712 Sc: 16.56 Pv: 4.910192e-03
| 22.19 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 22.19 |
ID: GP63_LEIMA AC: P08148 Len: 602 1:B 577 Sc: 22.19 Pv: 3.676186e-03
| 19.43 | -0.23 | -0.31 | -0.23 | 0.00 | 0.00 | 0.00 | -1.56 | -0.54 | -0.07 | -0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 16.38 |
ID: VSG7_TRYBR AC: P02898 Len: 467 1:B 444 Sc: 16.38 Pv: 4.956160e-03
| 12.41 | 0.00 | 0.00 | -0.01 | 0.00 | 0.00 | 0.00 | -0.66 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 11.74 |
ID: CSA_DICDI AC: P08796 Len: 514 1:C 492 Sc: 11.74 Pv: 6.287905e-03
| 18.01 | -0.53 | -0.26 | -0.16 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.58 | -0.42 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 16.05 |
ID: G13A_DICDI AC: P34115 Len: 730 1:C 704 Sc: 16.05 Pv: 5.039094e-03
| 23.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 23.59 |
ID: GP63_LEICH AC: P15706 Len: 599 1:B 574 Sc: 23.59 Pv: 3.420513e-03
| 23.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 23.59 |
ID: GP63_LEIDO AC: P23223 Len: 590 1:B 565 Sc: 23.59 Pv: 3.420513e-03
| -10.58 | -1.40 | -2.11 | -3.68 | 0.00 | 0.00 | 0.00 | -2.57 | 0.00 | 0.00 | -0.16 | 0.00 | -12.00 | 0.00 | 0.00 | 0.00 | -32.50 |
ID: GP85_TRYCR AC: Q03877 Len: 714 1:I 691 Sc: -32.50 Pv: 5.971670e-02
| -11.85 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.63 | 0.00 | 0.00 | -12.00 | 0.00 | 0.00 | 0.00 | -24.48 |
ID: MSA1_SARMU AC: Q01416 Len: 280 1:N 256 Sc: -24.48 Pv: 3.992833e-02
| -13.30 | -0.30 | 0.00 | 0.00 | -4.00 | 0.00 | 0.00 | 0.00 | -0.02 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -17.62 |
ID: PAG1_TRYBB AC: Q01889 Len: 405 1:N 388 Sc: -17.62 Pv: 2.820615e-02
| 18.72 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.18 | 0.00 | -0.56 | -0.27 | 0.00 | 0.00 | 0.00 | -12.00 | 0.00 | 4.72 |
ID: PARA_TRYBB AC: P18764 Len: 114 1:D 92 Sc: 4.72 Pv: 9.014354e-03
| 13.21 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.18 | 0.00 | -0.42 | -0.15 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 11.45 |
ID: PARB_TRYBB AC: P09791 Len: 129 1:C 107 Sc: 11.45 Pv: 6.382387e-03
| 19.89 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.18 | 0.00 | -0.52 | -0.27 | 0.00 | 0.00 | 0.00 | -12.00 | 0.00 | 5.93 |
ID: PARC_TRYBB AC: Q06084 Len: 145 1:D 123 Sc: 5.93 Pv: 8.473868e-03
| 9.89 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 9.88 |
ID: PONA_DICDI AC: P54660 Len: 143 1:C 117 Sc: 9.88 Pv: 6.917442e-03
| 9.55 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -5.92 | 0.00 | -0.06 | -1.68 | -12.00 | -12.00 | 0.00 | 0.00 | 0.00 | -22.10 |
ID: PSA_DICDI AC: P12729 Len: 168 1:I 148 Sc: -22.10 Pv: 3.540888e-02
| 30.96 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -4.21 | -0.31 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 24.31 |
ID: VSA1_TRYBB AC: P06015 Len: 503 1:B 480 Sc: 24.31 Pv: 3.296017e-03
| 33.74 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -0.85 | -0.34 | -0.08 | -0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 30.25 |
ID: VSA8_TRYBB AC: P06017 Len: 115 1:A 92 Sc: 30.25 Pv: 2.428588e-03
| 29.49 | -0.57 | -0.83 | -0.72 | 0.00 | 0.00 | 0.00 | -1.41 | -0.45 | -0.05 | -0.32 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 25.14 |
ID: VSAC_TRYBB AC: P06016 Len: 482 1:B 459 Sc: 25.14 Pv: 3.159501e-03
| 21.28 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.28 |
ID: VSE2_TRYBR AC: P26335 Len: 55 1:B 38 Sc: 21.28 Pv: 3.852495e-03
| 22.65 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.03 | -0.49 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 22.13 |
ID: VSG2_TRYEQ AC: P20950 Len: 457 1:B 440 Sc: 22.13 Pv: 3.686992e-03
| 21.21 | -0.55 | -0.71 | -0.66 | 0.00 | 0.00 | 0.00 | -0.92 | -0.32 | -2.40 | -5.40 | -12.00 | 0.00 | 0.00 | -12.00 | 0.00 | -13.75 |
ID: VSG4_TRYBR AC: P02897 Len: 476 1:I 457 Sc: -13.75 Pv: 2.317073e-02
| 9.01 | -0.49 | 0.00 | 0.00 | 0.00 | 0.00 | -4.00 | -0.34 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 4.17 |
ID: VSI1_TRYBB AC: P26326 Len: 471 1:D 455 Sc: 4.17 Pv: 9.271417e-03
| 21.28 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 21.28 |
ID: VSI2_TRYBB AC: P26327 Len: 479 1:B 462 Sc: 21.28 Pv: 3.852637e-03
| 24.51 | -0.84 | -1.19 | -0.46 | 0.00 | 0.00 | 0.00 | 0.00 | -0.70 | -0.18 | -0.35 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 20.80 |
ID: VSI3_TRYBB AC: P26328 Len: 532 1:B 509 Sc: 20.80 Pv: 3.947568e-03
| 33.16 | -0.55 | -0.71 | -0.66 | 0.00 | 0.00 | 0.00 | -0.28 | -0.07 | -0.07 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 30.80 |
ID: VSI4_TRYBB AC: P26329 Len: 514 1:A 491 Sc: 30.80 Pv: 2.360443e-03
| 32.08 | -0.55 | -0.71 | -0.66 | 0.00 | 0.00 | 0.00 | -0.28 | -0.07 | -0.07 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 29.73 |
ID: VSI5_TRYBB AC: P26330 Len: 507 1:A 484 Sc: 29.73 Pv: 2.495234e-03
| 32.67 | -0.66 | -0.86 | -0.83 | 0.00 | 0.00 | 0.00 | -0.02 | -1.06 | -0.08 | -0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 29.06 |
ID: VSI6_TRYBB AC: P06014 Len: 503 1:B 480 Sc: 29.06 Pv: 2.581568e-03
| 19.84 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -1.07 | -0.30 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 18.47 |
ID: VSIB_TRYBB AC: P07208 Len: 471 1:B 454 Sc: 18.47 Pv: 4.451119e-03
| 8.26 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.88 | -0.51 | -0.75 | -12.00 | 0.00 | 0.00 | 0.00 | 0.00 | -5.88 |
ID: VSM0_TRYBB AC: P07209 Len: 72 1:I 50 Sc: -5.88 Pv: 1.551222e-02
| 19.75 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.93 | -0.59 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 18.24 |
ID: VSM1_TRYBB AC: P26331 Len: 492 1:B 475 Sc: 18.24 Pv: 4.503907e-03
| 17.20 | 0.00 | 0.00 | -0.02 | 0.00 | 0.00 | 0.00 | 0.00 | -0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 17.05 |
ID: VSM2_TRYBB AC: P26332 Len: 476 1:B 459 Sc: 17.05 Pv: 4.787682e-03
| 31.20 | -0.66 | -0.86 | -0.83 | 0.00 | 0.00 | 0.00 | -1.35 | -0.55 | -0.03 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 26.90 |
ID: VSM4_TRYBB AC: P02896 Len: 526 1:B 503 Sc: 26.90 Pv: 2.884998e-03
| 24.05 | -0.68 | -0.82 | -0.64 | 0.00 | 0.00 | 0.00 | 0.00 | -0.19 | -0.78 | -0.52 | -12.00 | 0.00 | 0.00 | -12.00 | 0.00 | -3.57 |
ID: VSM5_TRYBB AC: P26333 Len: 474 1:I 451 Sc: -3.57 Pv: 1.378065e-02
| 24.13 | -0.55 | -0.71 | -0.66 | 0.00 | 0.00 | 0.00 | -2.94 | -0.52 | -0.07 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 18.65 |
ID: VSM5_TRYBR AC: P21840 Len: 517 1:B 495 Sc: 18.65 Pv: 4.408716e-03
| 32.33 | -0.55 | -0.71 | -0.66 | 0.00 | 0.00 | 0.00 | -1.47 | -0.42 | -0.02 | -0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 28.48 |
ID: VSM6_TRYBB AC: P26334 Len: 529 1:B 506 Sc: 28.48 Pv: 2.660605e-03
| 20.08 | 0.00 | 0.00 | -0.03 | 0.00 | 0.00 | 0.00 | 0.00 | -0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 19.93 |
ID: VSWA_TRYBR AC: P20946 Len: 471 1:B 454 Sc: 19.93 Pv: 4.129721e-03
| 13.46 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.01 | -0.14 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 13.31 |
ID: VSWB_TRYBR AC: P20947 Len: 487 1:C 470 Sc: 13.31 Pv: 5.801761e-03
| 2.75 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | -0.01 | 0.00 | 0.00 | -12.00 | 0.00 | 0.00 | 0.00 | -9.26 |
ID: VSY1_TRYCO AC: P20948 Len: 419 1:N 401 Sc: -9.26 Pv: 1.843099e-02
-->end of list of found GPI-sites
number of found GPI-sites 30
-->ReadSWEntry: End of File
number of complete entries : 38
number of failed entries : 0
number of unselected entries : 131
-->CloseSWFile: Data file closed
#
#
# Normal termination of program proto.
# total program time: CPU 0:00:55.15 sec, elapsed time 0:01:03.00 sec
#
Last modified: 12th June 2002