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Comparison: Application of the big-PI fungal predictor on the S.cerevisiae protein list created by Hamada et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9

Contact:
Birgit Eisenhaber (IMP/Austria)
Georg Schneider (IMP/Austria)
Michael Wildpaner (IMP/Austria)
Frank Eisenhaber (IMP/Austria)

Summary Table:

  Prediction Quality Rate PI-PLC treatment
1:P 42/53 23 (+5) GPI+ 2 (-2(*)) GPI- 17 (-3 (*)) nd
1:S 1/53 1 GPI+ - -
1:S (Positive Total Score) 1/53 1 GPI+ - -
1:S (Negative Total Score) - - - -
1:I 8/53 - 4 GPI - 4 nd
1:N 2/53 2 GPI + - -

N   ID Length Prediction Quality Site Profile Score Function Score Total Score PValue PI-PLC treatment
1 YJR004C 650 1:P 627 9.35 -6.18 3.17 3.330099e-04 GPI +
2 YNR044W 725 1:P 700 12.82 -4.61 8.21 7.395845e-05 nd
3 YKL096W 239 1:P 218 14.41 -0.06 14.35 7.943714e-06 nd
4 YKL097W-A 92 1:P 71 18.86 -1.24 17.62 1.969735e-06 nd
5 YAL063C 1322 1:P 1299 16.34 -5.97 10.37 3.562914e-05 nd
6 YAR050W 1537 1:P 1514 16.34 -5.97 10.37 3.562914e-05 nd
7 YHR211W 1075 1:P 1052 16.34 -5.97 10.37 3.562914e-05 nd
8 YKR102W 1169 1:I 1135 6.16 -21.09 -14.93 1.292145e-02 nd
9 YBR067C 210 1:P 186 20.05 -0.43 19.62 7.750742e-07 nd
10 YER011W 254 1:P 233 17.71 -0.79 16.92 2.690687e-06 nd
11 YIL011W (*) 269 1:P 245 19.43 -0.96 18.47 1.333957e-06 nd
12 YJR150C 298 1:P 275 20.07 -0.58 19.49 8.231140e-07 nd
13 YOR010C 251 1:P 231 16.26 -0.94 15.32 5.346892e-06 nd
14 YCR089W 1609 1:P 1588 14.61 -4.38 10.23 3.746978e-05 nd
15 YLR390W-A 238 1:P 217 16.59 -1.95 14.64 7.055745e-06 nd
16 YNL322C 313 1:I 288 8.30 -10.69 -2.39 1.322547e-03 nd
17 YMR307W 559 1:P 528 17.09 -3.35 13.74 1.012428e-05 GPI +
18 YFL067W 175 1:I 141 5.26 -13.60 -8.34 4.423570e-03 nd
19 YDR349C 596 1:N 573 5.62 -10.27 -4.65 2.154883e-03 GPI +
20 YIR039C 537 1:P 515 13.80 -2.78 11.02 2.831236e-05 GPI +
N   ID Length Prediction Quality Site Profile Score Function Score Total Score PValue PI-PLC treatment
21 YLR120C 569 1:S 548 8.90 -8.25 0.65 6.441821e-04 GPI +
22 YDR261C 562 1:I 539 3.07 -22.70 -19.63 2.424033e-02 GPI -
23 YIR019C (*) 1367 1:P 1346 13.57 -3.00 10.57 3.324204e-05 GPI -
24 YMR008C 664 1:P 634 12.83 -2.99 9.84 4.279396e-05 GPI +
25 YJL078C 881 1:P 853 15.07 -2.40 12.67 1.536207e-05 GPI +
26 YNL327W 1041 1:P 1020 17.26 -0.98 16.28 3.554759e-06 GPI +
27 YJR151C 1161 1:P 1137 18.18 -1.34 16.84 2.781958e-06 GPI +
28 YCR061W 631 1:I 602 -19.44 -41.83 -61.27 4.115342e-01 GPI -
29 YDR055W 444 1:P 419 18.03 -3.65 14.38 7.870454e-06 GPI +
30 YDR077W 338 1:P 318 19.28 -1.80 17.48 2.095550e-06 GPI +
31 YDR134C 136 1:P 115 19.52 -2.27 17.25 2.323900e-06 GPI +
32 YDR534C 528 1:P 506 18.84 -0.29 18.55 1.286022e-06 GPI +
33 YEL040W 467 1:P 445 16.55 -0.58 15.97 4.065408e-06 GPI +
34 YER150W 148 1:P 127 20.06 -1.05 19.01 1.034709e-06 GPI +
35 YFR054C 192 1:I 156 3.21 -33.52 -30.31 7.335548e-02 GPI -
36 YGR189C 507 1:P 482 14.84 -2.56 12.28 1.779857e-05 GPI +
37 YJL171C 396 1:N 367 0.23 -16.77 -16.54 1.621107e-02 GPI +
38 YLR040C (*) 224 1:P 203 14.67 -1.39 13.28 1.213639e-05 GPI -
39 YLR042C 161 1:P 139 8.07 -2.68 5.39 1.773594e-04 GPI +
40 YLR110C 133 1:P 112 19.02 -1.27 17.75 1.855228e-06 GPI +
N   ID Length Prediction Quality Site Profile Score Function Score Total Score PValue PI-PLC treatment
41 YLR121C 508 1:P 483 16.42 -1.63 14.79 6.638689e-06 nd
42 YLR194C (*) 254 1:P 232 17.55 -0.25 17.30 2.270712e-06 nd
43 YMR172C-A 127 1:I 109 -16.00 -27.01 -43.01 1.812842e-01 nd
44 YMR215W 524 1:P 492 16.42 -0.28 16.14 3.768587e-06 GPI +
45 YNL190W 204 1:P 174 14.85 -1.44 13.41 1.153841e-05 GPI +
46 YNL300W 102 1:P 80 15.37 -1.10 14.27 8.208180e-06 GPI +
47 YOL011W 686 1:P 659 15.86 -3.41 12.45 1.667253e-05 nd
48 YOR009W 487 1:P 465 18.83 -2.32 16.51 3.219705e-06 GPI +
49 YOR146W 101 1:I 62 6.07 -43.34 -37.27 1.258332e-01 GPI -
50 YOR214C 236 1:P 213 13.19 -0.42 12.77 1.480982e-05 GPI +
51 YOR382W 153 1:P 129 21.12 0.00 21.12 3.681945e-07 GPI +
52 YOR383C (*) 204 1:P 182 19.65 -0.36 19.29 9.063640e-07 nd
53 YPL130W 223 1:P 198 13.42 -1.73 11.69 2.218126e-05 GPI +

(*) These proteins are listed as GPI-attached proteins in the later publication Hamada et al., J Bacteriol. 1999 Jul;181(13):3886-9 .



Last modified: 25th September 2003