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The fungi learning set

Contact:
Birgit Eisenhaber (IMP/Austria)
Michael Wildpaner (IMP/Austria)
Frank Eisenhaber (IMP/Austria)

N Protein Source Experimental Status/ GPI verification
1 SAG1_YEAST Wojciechowicz D et al., Mol Cell Biol. 1993 Apr;13(4):2554-63 PI-PLC treatment, C-terminal truncation
2 AGA1_YEAST Roy A et al., Mol Cell Biol. 1991 Aug;11(8):4196-206 predicted
3 CWP1_YEAST Shimoi H et al., J Biochem (Tokyo). 1995 Aug;118(2):302-11 C-terminal truncation
4 CWP2_YEAST Skrzypek M et al, J Bacteriol. 1997 Mar;179(5):1513-20 C-terminus functions as a GPI signal in truncated GAS1
5 FLO1_YEAST Bony M et al., J Bacteriol. 1997 Aug;179(15):4929-36 PI-PLC treatment, C-terminal truncation
6 CW14_YEAST Moukadiri I et al., J Bacteriol. 1997 Apr;179(7):2154-62 predicted
7 TIP1_YEAST Fujii T et al., Biochim Biophys Acta. 1999 Apr 19;1427(2):133-44 Structure of the glucan-binding sugar chain
8 TIR1_YEAST Kowalski LR et al., Mol Microbiol. 1995 Jan;15(2):341-53 predicted
9 SED1_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
10 FIG2_YEAST Van der Vaart JM et al., Appl Environ Microbiol. 1997 Feb;63(2):615-20 predicted
11 KRE1_YEAST Roemer T, Bussey H, Mol Gen Genet. 1995 Nov 15;249(2):209-16 PI-PLC treatment, no decision GPI/TM
12 GAS1_YEAST Nuoffer C et al., J Biol Chem. 1993 May 15;268(14):10558-63 PI-PLC treatment, mutation series
13 YAP3_YEAST Ash J et al., J Biol Chem. 1995 Sep 1;270(35):20847-54 PI-PLC treatment, metabolic labeling
14 S61146 Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
15 YIV9_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
16 PLB1_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
17 YJH8_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
18 EGT2_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
19 DAN4_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
20 PST1_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
N Protein Source Experimental Status/ GPI verification
21 YDR134c; Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
22 S69589; Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
23 UTR2_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
24 YEY0_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
25 YG46_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
26 YJR1_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
27 CAA97571.1 Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
28 CW12_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
29 GAS3_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
30 YNT0_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
31 YN40_YEAST Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
32 CAA99197.1 Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
33 CAA99430.1 Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
34 CAA99714.1 Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
35 S69054 Hamada K et al., Mol Gen Genet. 1998 Apr;258(1-2):53-9 PI-PLC treatment
36 MKC7_YEAST Komano H, Fuller RS, Proc Natl Acad Sci U S A. 1995 Nov 7;92(23):10752-6 PI-PLC treatment, C-terminal truncation
37 CAR9_CANAL MKC7_YEAST homolog: Big-PI prediction predicted
38 BAC00849.1 MKC7_YEAST homolog: Big-PI prediction predicted
39 AAF66711.2 MKC7_YEAST homolog: Big-PI prediction predicted
40 DAN1_YEAST Mrsa V et al., J Bacteriol. 1999 May;181(10):3076-86 predicted
N Protein Source Experimental Status/ GPI verification
41 HYR1_CANAL Bailey DA et al., J Bacteriol. 1996 Sep;178(18):5353-60 PI-PLC treatment
42 EPD1_CANMA Nakazawa T et al., J Bacteriol. 1998 Apr;180(8):2079-86 predicted
43 EPD2_CANMA Nakazawa T et al., Biosci Biotechnol Biochem. 2000 Feb;64(2):369-77 predicted
44 YAG3_YEAST FLO1_YEAST homolog: Big-PI prediction predicted
45 PHR1_CANAL Vai M et al., Yeast. 1996 Mar 30;12(4):361-8 PI-PLC treatment
46 PHR2_CANAL Muhlschlegel FA, Fonzi WA, Mol Cell Biol. 1997 Oct;17(10):5960-7 predicted
47 AMYH_YEAST Lo WS, Dranginis AM, J Bacteriol. 1996 Dec;178(24):7144-51 predicted
48 SPS2_YEAST Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
49 EC33_YEAST Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
50 NP_015028 Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
51 S64867 Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
52 NP_013719 Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
53 NP_012254 Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
54 NP_014612 Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
55 NP_013295 Terashima H et al., Mol Gen Genet. 2000 Sep;264(1-2):64-74 PI-PLC treatment
56 NP_014509 Hamada K et al., J Bacteriol. 1999 Jul;181(13):3886-9 predicted
57 AAN64312 NCU07454.1 homolog: Big-PI prediction predicted
58 AAL47843 Schoffelmeer EA et al., Mol Genet Genomics. 2001 Mar;265(1):143-52 C-terminal truncation
59 AAG29538 orf19.5635 homolog: Big-PI prediction predicted
60 HWP1_CANAL Braun BR et al., Genetics. 2000 Sep;156(1):31-44 predicted
N Protein Source Experimental Status/ GPI verification
61 AAG09787 Braun BR et al., Genetics. 2000 Sep;156(1):31-44 predicted
62 AAG09790 Braun BR et al., Genetics. 2000 Sep;156(1):31-44 predicted
63 AAG09792 Braun BR et al., Genetics. 2000 Sep;156(1):31-44 predicted
64 ALS1_CANAL Kapteyn JC et al., Mol Microbiol. 2000 Feb;35(3):601-11 predicted
65 ALS3_CANAL Kapteyn JC et al., Mol Microbiol. 2000 Feb;35(3):601-11 predicted
66 AAL66381 Bruneau JM et al., Electrophoresis. 2001 Aug;22(13):2812-23 PI-PLC treatment
67 AAN87849 Bruneau JM et al., Electrophoresis. 2001 Aug;22(13):2812-23 PI-PLC treatment
68 AAC35942 Mouyna I et al., J Biol Chem. 2000 May 19;275(20):14882-9 PI-PLC treatment, C-terminal truncation
69 AAF40139 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
70 AAF40140 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
71 AAL09458 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
72 EAA32871 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
73 CAC83344 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
74 CAC83346 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
75 AAG16995 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
76 AAG16996 AAC35942 (Gel1 A.funmigatus) homolog: Big-PI prediction predicted
77 EAA33812 UTR2_YEAST homolog: Big-PI prediction predicted
78 AAA67766 Guadiz G et al., J Biol Chem. 1998 Oct 2;273(40):26202-9 PI-PLC treatment, metabolic labeling
79 206 C.albicans genome: Big-PI prediction predicted
80 207 C.albicans genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
81 301 C.albicans genome: Big-PI prediction predicted
82 465 C.albicans genome: Big-PI prediction predicted
83 532 C.albicans genome: Big-PI prediction predicted
84 535 C.albicans genome: Big-PI prediction predicted
85 575 C.albicans genome: Big-PI prediction predicted
86 876 C.albicans genome: Big-PI prediction predicted
87 893 C.albicans genome: Big-PI prediction predicted
88 968 C.albicans genome: Big-PI prediction predicted
89 1671 C.albicans genome: Big-PI prediction predicted
90 1714 C.albicans genome: Big-PI prediction predicted
91 1824 C.albicans genome: Big-PI prediction predicted
92 1911 C.albicans genome: Big-PI prediction predicted
93 2060 C.albicans genome: Big-PI prediction predicted
94 2062 C.albicans genome: Big-PI prediction predicted
95 2108 C.albicans genome: Big-PI prediction predicted
96 2451 C.albicans genome: Big-PI prediction predicted
97 2683 C.albicans genome: Big-PI prediction predicted
98 2706 C.albicans genome: Big-PI prediction predicted
99 2765 C.albicans genome: Big-PI prediction predicted
100 2767 C.albicans genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
101 2833 C.albicans genome: Big-PI prediction predicted
102 2878 C.albicans genome: Big-PI prediction predicted
103 2906 C.albicans genome: Big-PI prediction predicted
104 2907 C.albicans genome: Big-PI prediction predicted
105 2952 C.albicans genome: Big-PI prediction predicted
106 3279 C.albicans genome: Big-PI prediction predicted
107 3380 C.albicans genome: Big-PI prediction predicted
108 3618 C.albicans genome: Big-PI prediction predicted
109 3638 C.albicans genome: Big-PI prediction predicted
110 3738 C.albicans genome: Big-PI prediction predicted
111 3740 C.albicans genome: Big-PI prediction predicted
112 3895 C.albicans genome: Big-PI prediction predicted
113 3923 C.albicans genome: Big-PI prediction predicted
114 3966 C.albicans genome: Big-PI prediction predicted
115 3989 C.albicans genome: Big-PI prediction predicted
116 4035 C.albicans genome: Big-PI prediction predicted
117 4255 C.albicans genome: Big-PI prediction predicted
118 4361 C.albicans genome: Big-PI prediction predicted
119 4404 C.albicans genome: Big-PI prediction predicted
120 4652 C.albicans genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
121 4653 C.albicans genome: Big-PI prediction predicted
122 4654 C.albicans genome: Big-PI prediction predicted
123 4689 C.albicans genome: Big-PI prediction predicted
124 5102 C.albicans genome: Big-PI prediction predicted
125 5144 C.albicans genome: Big-PI prediction predicted
126 5588 C.albicans genome: Big-PI prediction predicted
127 5635 C.albicans genome: Big-PI prediction predicted
128 5760 C.albicans genome: Big-PI prediction predicted
129 5762 C.albicans genome: Big-PI prediction predicted
130 6302 C.albicans genome: Big-PI prediction predicted
131 6321 C.albicans genome: Big-PI prediction predicted
132 6390 C.albicans genome: Big-PI prediction predicted
133 6420 C.albicans genome: Big-PI prediction predicted
134 6594 C.albicans genome: Big-PI prediction predicted
135 7030 C.albicans genome: Big-PI prediction predicted
136 7130 C.albicans genome: Big-PI prediction predicted
137 7414 C.albicans genome: Big-PI prediction predicted
138 7472 C.albicans genome: Big-PI prediction predicted
139 7609 C.albicans genome: Big-PI prediction predicted
140 8495 C.albicans genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
141 8979 C.albicans genome: Big-PI prediction predicted
142 9891 C.albicans genome: Big-PI prediction predicted
143 9987 C.albicans genome: Big-PI prediction predicted
144 10273 C.albicans genome: Big-PI prediction predicted
145 10397 C.albicans genome: Big-PI prediction predicted
146 10424 C.albicans genome: Big-PI prediction predicted
147 10425 C.albicans genome: Big-PI prediction predicted
148 10724 C.albicans genome: Big-PI prediction predicted
149 11405 C.albicans genome: Big-PI prediction predicted
150 12609 C.albicans genome: Big-PI prediction predicted
151 NCU08936.1 N.crassa genome: Big-PI prediction predicted
152 NCU09072.1 N.crassa genome: Big-PI prediction predicted
153 NCU09099.1 N.crassa genome: Big-PI prediction predicted
154 NCU09117.1 N.crassa genome: Big-PI prediction predicted
155 NCU09133.1 N.crassa genome: Big-PI prediction predicted
156 NCU09155.1 N.crassa genome: Big-PI prediction predicted
157 NCU09175.1 N.crassa genome: Big-PI prediction predicted
158 NCU09263.1 N.crassa genome: Big-PI prediction predicted
159 NCU09568.1 N.crassa genome: Big-PI prediction predicted
160 NCU09647.1 N.crassa genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
161 NCU09729.1 N.crassa genome: Big-PI prediction predicted
162 NCU09733.1 N.crassa genome: Big-PI prediction predicted
163 NCU09851.1 N.crassa genome: Big-PI prediction predicted
164 NCU09868.1 N.crassa genome: Big-PI prediction predicted
165 NCU09929.1 N.crassa genome: Big-PI prediction predicted
166 NCU06381.1 N.crassa genome: Big-PI prediction predicted
167 NCU06607.1 N.crassa genome: Big-PI prediction predicted
168 NCU06703.1 N.crassa genome: Big-PI prediction predicted
169 NCU06781.1 N.crassa genome: Big-PI prediction predicted
170 NCU07063.1 N.crassa genome: Big-PI prediction predicted
171 NCU07277.1 N.crassa genome: Big-PI prediction predicted
172 NCU07454.1 N.crassa genome: Big-PI prediction predicted
173 NCU07485.1 N.crassa genome: Big-PI prediction predicted
174 NCU07776.1 N.crassa genome: Big-PI prediction predicted
175 NCU07962.1 N.crassa genome: Big-PI prediction predicted
176 NCU08131.1 N.crassa genome: Big-PI prediction predicted
177 NCU08243.1 N.crassa genome: Big-PI prediction predicted
178 NCU08318.1 N.crassa genome: Big-PI prediction predicted
179 NCU00086.1 N.crassa genome: Big-PI prediction predicted
180 NCU00175.1 N.crassa genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
181 NCU00205.1 N.crassa genome: Big-PI prediction predicted
182 NCU00267.1 N.crassa genome: Big-PI prediction predicted
183 NCU00270.1 N.crassa genome: Big-PI prediction predicted
184 NCU00322.1 N.crassa genome: Big-PI prediction predicted
185 NCU00473.1 N.crassa genome: Big-PI prediction predicted
186 NCU00881.1 N.crassa genome: Big-PI prediction predicted
187 NCU00957.1 N.crassa genome: Big-PI prediction predicted
188 NCU01162.1 N.crassa genome: Big-PI prediction predicted
189 NCU01425.1 N.crassa genome: Big-PI prediction predicted
190 NCU01462.1 N.crassa genome: Big-PI prediction predicted
191 NCU01549.1 N.crassa genome: Big-PI prediction predicted
192 NCU02041.1 N.crassa genome: Big-PI prediction predicted
193 NCU02184.1 N.crassa genome: Big-PI prediction predicted
194 NCU02584.1 N.crassa genome: Big-PI prediction predicted
195 NCU02880.1 N.crassa genome: Big-PI prediction predicted
196 NCU02884.1 N.crassa genome: Big-PI prediction predicted
197 NCU02909.1 N.crassa genome: Big-PI prediction predicted
198 NCU02956.1 N.crassa genome: Big-PI prediction predicted
199 NCU03168.1 N.crassa genome: Big-PI prediction predicted
200 NCU03222.1 N.crassa genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
201 NCU03293.1 N.crassa genome: Big-PI prediction predicted
202 NCU03530.1 N.crassa genome: Big-PI prediction predicted
203 NCU03602.1 N.crassa genome: Big-PI prediction predicted
204 NCU03775.1 N.crassa genome: Big-PI prediction predicted
205 NCU03873.1 N.crassa genome: Big-PI prediction predicted
206 NCU04066.1 N.crassa genome: Big-PI prediction predicted
207 NCU04493.1 N.crassa genome: Big-PI prediction predicted
208 NCU04496.1 N.crassa genome: Big-PI prediction predicted
209 NCU04543.1 N.crassa genome: Big-PI prediction predicted
210 NCU04616.1 N.crassa genome: Big-PI prediction predicted
211 NCU05229.1 N.crassa genome: Big-PI prediction predicted
212 NCU05318.1 N.crassa genome: Big-PI prediction predicted
213 NCU05395.1 N.crassa genome: Big-PI prediction predicted
214 NCU05667.1 N.crassa genome: Big-PI prediction predicted
215 NCU06185.1 N.crassa genome: Big-PI prediction predicted
216 YCL048W S.cerevisiae genome: Big-PI prediction predicted
217 YHR126C S.cerevisiae genome: Big-PI prediction predicted
218 YKL046C Kitagaki H et al., Mol Microbiol. 2002 Nov;46(4):1011-22 PI-PLC treatment
219 YKL175W S.cerevisiae genome: Big-PI prediction predicted
220 YLR121C Terashima H et al., Mol Gen Genet. 2000 Sep;264(1-2):64-74 PI-PLC treatment
N Protein Source Experimental Status/ GPI verification
221 YLR343W S.cerevisiae genome: Big-PI prediction predicted
222 YMR122W-A S.cerevisiae genome: Big-PI prediction predicted
223 YMR200W S.cerevisiae genome: Big-PI prediction predicted
224 YMR238W Kitagaki H et al., Mol Microbiol. 2002 Nov;46(4):1011-22 predicted
225 YOL011W S.cerevisiae genome: Big-PI prediction predicted
226 YOL155C Lafuente MJ, Gancedo C, Yeast. 1999 Jul;15(10B):935-43 predicted
227 SPBC342.03 S.pombe genome: Big-PI prediction predicted
228 SPAC19B12.02c S.pombe genome: Big-PI prediction predicted
229 SPCC24B10.06 S.pombe genome: Big-PI prediction predicted
230 SPCC1223.12c S.pombe genome: Big-PI prediction predicted
231 SPAC19G12.16c S.pombe genome: Big-PI prediction predicted
232 SPCC1795.09 S.pombe genome: Big-PI prediction predicted
233 SPAC17A5.04c S.pombe genome: Big-PI prediction predicted
234 SPCC1742.01 S.pombe genome: Big-PI prediction predicted
235 SPBC215.13 S.pombe genome: Big-PI prediction predicted
236 SPAC11E3.13c S.pombe genome: Big-PI prediction predicted
237 SPAPB18E9.04c S.pombe genome: Big-PI prediction predicted
238 SPAC1F8.02c S.pombe genome: Big-PI prediction predicted
239 SPAC750.07c S.pombe genome: Big-PI prediction predicted
240 SPAC26A3.01 S.pombe genome: Big-PI prediction predicted
N Protein Source Experimental Status/ GPI verification
241 SPAC27F1.07 S.pombe genome: Big-PI prediction predicted
242 SPCC553.10 S.pombe genome: Big-PI prediction predicted
243 SPBP19A11.02c S.pombe genome: Big-PI prediction predicted
244 SPAC27E2.11c S.pombe genome: Big-PI prediction predicted
245 SPCC1322.10 S.pombe genome: Big-PI prediction predicted
246 SPCC757.12 S.pombe genome: Big-PI prediction predicted
247 SPBC1E8.05 S.pombe genome: Big-PI prediction predicted
248 SPCC63.02c S.pombe genome: Big-PI prediction predicted
249 SPAC1786.02 S.pombe genome: Big-PI prediction predicted
250 SPAC1F5.08c S.pombe genome: Big-PI prediction predicted
251 SPBPJ4664.02 S.pombe genome: Big-PI prediction predicted
252 SPAPB15E9.01c S.pombe genome: Big-PI prediction predicted
253 SPAC1705.03c S.pombe genome: Big-PI prediction predicted
254 GAS1_N506C Nuoffer C et al., J Biol Chem. 1993 May 15;268(14):10558-63 PI-PLC treatment, mutation series
All proteins that are included in the learning set have a (predicted) N-terminal signal leader peptide.

Last modified: 23rd October 2002