Score E
Sequences producing significant alignments: (bits) Value
ref|NP_065138.1| tumor endothelial marker 7 precursor [Homo... 980 0.0
gb|AAF46578.1| (AE003450) CG2221 gene product [Drosophila m... 233 3e-60
pir||T19786 hypothetical protein C36E8.3 - Caenorhabditis e... 214 2e-54
pir||S31213 nidogen precursor - sea squirt (Halocynthia ror... 44 0.005
ref|NP_005752.1| plexin C1; receptor for virally-encoded se... 40 0.052
ref|NP_002664.1| plexin B1; plexin 5; KIAA0407 protein [Hom... 38 0.35
emb|CAB56222.1| (AJ011415) plexin-B1/SEP receptor [Homo sap... 38 0.35
emb|CAB56221.1| (AJ011414) plexin-B1/SEP receptor [Homo sap... 38 0.35
dbj|BAA23703.1| (AB007867) KIAA0407 [Homo sapiens] 38 0.35
pir||T23298 hypothetical protein K04B12.1 - Caenorhabditis ... 36 0.78
emb|CAA69141.1| (Y07803) ND7 [Paramecium tetraurelia] 36 1.3
emb|CAB57275.1| (X87831) OCT/plexin-A2 protein [Homo sapiens] 35 1.7
dbj|BAA32308.1| (AB007932) KIAA0463 protein [Homo sapiens] 35 1.7
ref|NP_059984.1| SEX gene [Homo sapiens] >gi|1711384|sp|P51... 35 1.7
pir||A60165 sodium channel protein - fruit fly (Drosophila ... 35 1.7
emb|CAA32571.1| (X14398) sodium channel protein [Drosophila... 35 1.7
gb|AAF59394.1| (AE003846) plexA gene product [Drosophila me... 34 3.9
ref|NP_061267.1| plexin C1; viral-encoded semaphorin protei... 34 3.9
pir||T13937 plexin A - fruit fly (Drosophila melanogaster) ... 34 3.9
ref|NP_032909.1| plexin 3 [Mus musculus] >gi|2137646|pir||J... 34 3.9
pir||JC4975 plexin 2 precursor - mouse >gi|1655432|dbj|BAA1... 34 5.1
ref|NP_032907.1| plexin 1 [Mus musculus] >gi|2137644|pir||J... 33 6.7
emb|CAB57274.1| (X87832) NOV/plexin-A1 protein [Homo sapiens] 33 8.8
sp|Q91660|GLI3_XENLA ZINC FINGER PROTEIN GLI3 (NEURAL SPECI... 33 8.8
pir||I51553 Plexin - African clawed frog >gi|961515|dbj|BAA... 33 8.8
>ref|NP_065138.1| tumor endothelial marker 7 precursor [Homo sapiens]
gb|AAG00869.1|AF279144_1 (AF279144) tumor endothelial marker 7 precursor [Homo sapiens]
Length = 502
Score = 980 bits (2507), Expect = 0.0
Identities = 467/502 (93%), Positives = 467/502 (93%)
Query: 1 MRGXXXXXXXXXXXXXXXXSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDR 60
MRG SPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDR
Sbjct: 1 MRGELWLLVLVLREAARALSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDR 60
Query: 61 TQLSQDLGGGTLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVK 120
TQLSQDLGGGTLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVK
Sbjct: 61 TQLSQDLGGGTLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVK 120
Query: 121 IHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMA 180
IHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMA
Sbjct: 121 IHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMA 180
Query: 181 NFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPM 240
NFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPM
Sbjct: 181 NFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPM 240
Query: 241 SVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTP 300
SVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTP
Sbjct: 241 SVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTP 300
Query: 301 LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWDGTMGCAQEAEGQDVRGL 360
LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWDGTMGCAQEAEGQDVRGL
Sbjct: 301 LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWDGTMGCAQEAEGQDVRGL 360
Query: 361 PGMRTTTSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTK 420
PGMRTTTSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTK
Sbjct: 361 PGMRTTTSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTK 420
Query: 421 GTPVHLGTXXXXXXXXXXXXXXXXXXXYINGHPTSNAALFFIERRPHHWPAMKFRSHPDH 480
GTPVHLGT YINGHPTSNAALFFIERRPHHWPAMKFRSHPDH
Sbjct: 421 GTPVHLGTIVGIVLAVLLVAAIILAGIYINGHPTSNAALFFIERRPHHWPAMKFRSHPDH 480
Query: 481 STYAEVEPSGHEKEGFMEAEQC 502
STYAEVEPSGHEKEGFMEAEQC
Sbjct: 481 STYAEVEPSGHEKEGFMEAEQC 502
>gb|AAF46578.1| (AE003450) CG2221 gene product [Drosophila melanogaster]
Length = 625
Score = 233 bits (589), Expect = 3e-60
Identities = 115/266 (43%), Positives = 163/266 (61%), Gaps = 10/266 (3%)
Query: 87 DNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVKIHTILSNTHRQASRVVLSFDFPFYGH 146
D H YY S LY ++ LW ++ + +LS++HR+A V L FDFPFYGH
Sbjct: 214 DFHEYYNSVLY-ENKDEVASLWTELKATPEN-----IMLSSSHRRAMTVELKFDFPFYGH 267
Query: 147 PLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQWD 206
+R IT+ATGGF++ G+ +H L ATQY+APLMANF+ S++S V DNGT F W+
Sbjct: 268 FVRNITVATGGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRLHDNGTAFTAVWE 327
Query: 207 HVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPMSVPEISSSQHPVKTGLSDAFMILNPS 266
+V LQ D G FTF L+ G IVFAY +P ++ I +HPVK GLSDA++I
Sbjct: 328 NVTLQDKPDFGKFTFSVTLYQSGDIVFAYMLVPTNINSIQDKEHPVKVGLSDAYII---D 384
Query: 267 PDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCH 326
+ +RR++I+EYHR+ ++T+ + ++ PTCL + C++C++ + TF C WC
Sbjct: 385 KQLFFARRKTIYEYHRVTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCS 444
Query: 327 VLQRCSSGFDRYRQEWDGTMGCAQEA 352
VL RCS+G DR + EW MGC A
Sbjct: 445 VLNRCSTGTDRKKHEW-LQMGCEATA 469
>pir||T19786 hypothetical protein C36E8.3 - Caenorhabditis elegans
emb|CAA84646.1| (Z35597) Weak similarity with sea squirt nidogen precursor protein
(blastp score 71)~cDNA EST EMBL:T02069 comes from this
gene~cDNA EST yk114g11.5 comes from this gene~cDNA EST
yk114g11.3 comes from this gene~cDNA EST yk85g6.3 comes
from this gene~cDNA>
Length = 476
Score = 214 bits (540), Expect = 2e-54
Identities = 114/279 (40%), Positives = 164/279 (57%), Gaps = 18/279 (6%)
Query: 78 PDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVKI----HTILSNTHRQAS 133
PD + +H YY + + ++ W++V + + + H +LS ++R+A
Sbjct: 93 PDVEVKNDMIDHQYYQAETFVGDGETLKKYWINVEQFMKKPKAVGNTSHPLLSQSYRRAV 152
Query: 134 RVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVV 193
L F FPFYGH + +TIATGGFI++GD H L ATQY+APLMANF+ Y +NS +V
Sbjct: 153 GARLQFKFPFYGHKMSNLTIATGGFIYIGDHSHNWLAATQYIAPLMANFHT-YLNNSNIV 211
Query: 194 YFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPMSVPEISSSQHPVK 253
Y D+G +FVV+W +V L+ +D+ SFTFQ LH +G IVF YK++P + IS + HPVK
Sbjct: 212 YADDGELFVVEWRNVQLKEDKDEHSFTFQTILHKNGDIVFIYKDVPYDISNISDANHPVK 271
Query: 254 TGLSDAFMILN--PSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTPLPTCLQHRSCD 311
G+SDA+M + VP +R I+EYHRIE+ K+ S + V PTC+ +CD
Sbjct: 272 LGISDAYMFKHNLHQAAVP---KRVIYEYHRIEIAAQKIVSNTVVILKAQPTCISFDTCD 328
Query: 312 ACMSSDLT-FNCSWCHVLQR-----CS--SGFDRYRQEW 342
C ++ L FNC WCH + C+ +G R RQ W
Sbjct: 329 TCTNATLPHFNCLWCHAKKSHGGPFCTDEAGLHRRRQHW 367
>pir||S31213 nidogen precursor - sea squirt (Halocynthia roretzi)
dbj|BAA03127.1| (D14038) entactin/nidogen [Halocynthia roretzi]
Length = 1161
Score = 43.8 bits (101), Expect = 0.005
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 137 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYS--------- 187
LS FY +T+ T GFI + +V +AP M++ + S
Sbjct: 47 LSMPIVFYDQKYDSVTVHTDGFITLENV-GADTDGEVLLAPFMSDLDTELSGDIFFREHK 105
Query: 188 DNSTVVY---------------FDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIV 232
DN+T+ F+ G+VFVV WD V ED +FTFQ + DG
Sbjct: 106 DNATIARANTDVREAFIETAGDFNAGSVFVVTWDKVQSASREDGVTFTFQCIVATDGAAT 165
Query: 233 FA 234
FA
Sbjct: 166 FA 167
>ref|NP_005752.1| plexin C1; receptor for virally-encoded semaphorin; plexin
(semaphorin receptor) [Homo sapiens]
pir||T09074 semaphorin receptor VESPR - human
gb|AAC18823.1| (AF030339) VESPR [Homo sapiens]
Length = 1568
Score = 40.2 bits (92), Expect = 0.052
Identities = 31/108 (28%), Positives = 49/108 (44%), Gaps = 14/108 (12%)
Query: 280 YHRIELDPSK-----VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSG 334
++++ DP K +T+ V + C +H+SC C+++ +C WCH LQRC+
Sbjct: 426 FYKLVPDPVKNIYIYLTAGKEVRRIRVANCNKHKSCSECLTATDP-HCGWCHSLQRCTFQ 484
Query: 335 FDRYRQE----W-DGTMGCAQEAEGQDVRGLPGMRTTTSASPDTSFSP 377
D E W D + G + + Q +R T T SFSP
Sbjct: 485 GDCVHSENLENWLDISSGAKKCPKIQIIRSSKEKTTVTMVG---SFSP 529
>ref|NP_002664.1| plexin B1; plexin 5; KIAA0407 protein [Homo sapiens]
emb|CAB57277.1| (X87904) semaphorin receptor [Homo sapiens]
Length = 2135
Score = 37.5 bits (85), Expect = 0.35
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS--------SGFDRYRQE 341
V + S + P+ +C QH C +C++ + C WC +L RCS G +++
Sbjct: 468 VMTQSTLLKVPVASCAQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWLWS 526
Query: 342 WDGTMGCAQEA 352
+ +GC Q A
Sbjct: 527 FQPELGCLQVA 537
>emb|CAB56222.1| (AJ011415) plexin-B1/SEP receptor [Homo sapiens]
Length = 1952
Score = 37.5 bits (85), Expect = 0.35
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS--------SGFDRYRQE 341
V + S + P+ +C QH C +C++ + C WC +L RCS G +++
Sbjct: 468 VMTQSTLLKVPVASCAQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWLWS 526
Query: 342 WDGTMGCAQEA 352
+ +GC Q A
Sbjct: 527 FQPELGCLQVA 537
>emb|CAB56221.1| (AJ011414) plexin-B1/SEP receptor [Homo sapiens]
Length = 729
Score = 37.5 bits (85), Expect = 0.35
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS--------SGFDRYRQE 341
V + S + P+ +C QH C +C++ + C WC +L RCS G +++
Sbjct: 468 VMTQSTLLKVPVASCAQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWLWS 526
Query: 342 WDGTMGCAQEA 352
+ +GC Q A
Sbjct: 527 FQPELGCLQVA 537
>dbj|BAA23703.1| (AB007867) KIAA0407 [Homo sapiens]
Length = 2135
Score = 37.5 bits (85), Expect = 0.35
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS--------SGFDRYRQE 341
V + S + P+ +C QH C +C++ + C WC +L RCS G +++
Sbjct: 468 VMTQSTLLKVPVASCAQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWLWS 526
Query: 342 WDGTMGCAQEA 352
+ +GC Q A
Sbjct: 527 FQPELGCLQVA 537
>pir||T23298 hypothetical protein K04B12.1 - Caenorhabditis elegans
emb|CAB05755.1| (Z83232) predicted using Genefinder~contains similarity to Pfam
domain: PF01437 (Plexin repeat), Score=108.3,
E-value=4.8e-29, N=3; PF01833 (IPT/TIG domain),
Score=170.0, E-value=1.3e-47, N=3~cDNA EST yk21h1.5
comes from this gene~cDNA EST yk59e11.5 co>
Length = 1806
Score = 36.4 bits (82), Expect = 0.78
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 2/30 (6%)
Query: 304 CLQHRSCDACMSSDLTFNCSWCHVLQRCSS 333
C + +C +CMSS+ +NC+WC L +CS+
Sbjct: 618 CSGYGTCSSCMSSE--YNCAWCSGLHKCSN 645
Score = 34.0 bits (76), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 301 LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSS 333
L TC H SC C+ S + C WCH Q C++
Sbjct: 484 LSTCSHHSSCTECLVS-VDPLCQWCHPTQSCTT 515
>emb|CAA69141.1| (Y07803) ND7 [Paramecium tetraurelia]
Length = 506
Score = 35.6 bits (80), Expect = 1.3
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 3/35 (8%)
Query: 300 PLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSG 334
PL C Q R CD+C+S + C WC Q C G
Sbjct: 271 PLSICQQLRECDSCLSRE---GCIWCTEEQTCQEG 302
>emb|CAB57275.1| (X87831) OCT/plexin-A2 protein [Homo sapiens]
Length = 1328
Score = 35.2 bits (79), Expect = 1.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWD 343
V S V P+ +C Q+ +C C+SS +C WC + CS D+ +Q W+
Sbjct: 51 VMSERQVTRVPVESCEQYTTCGECLSSG-DPHCGWCALHNMCSRR-DKCQQAWE 102
Score = 33.6 bits (75), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRCS 332
Q SC C+ +D F C WC +RC+
Sbjct: 361 QRESCGLCLKADRKFECGWCSGERRCT 387
>dbj|BAA32308.1| (AB007932) KIAA0463 protein [Homo sapiens]
Length = 1963
Score = 35.2 bits (79), Expect = 1.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWD 343
V S V P+ +C Q+ +C C+SS +C WC + CS D+ +Q W+
Sbjct: 566 VMSERQVTRVPVESCEQYTTCGECLSSG-DPHCGWCALHNMCSRR-DKCQQAWE 617
Score = 33.6 bits (75), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRCS 332
Q SC C+ +D F C WC +RC+
Sbjct: 876 QRESCGLCLKADRKFECGWCSGERRCT 902
>ref|NP_059984.1| SEX gene [Homo sapiens]
sp|P51805|PLX4_HUMAN PLEXIN 4 PRECURSOR (TRANSMEMBRANE PROTEIN SEX)
emb|CAA61132.1| (X87852) SEX protein [Homo sapiens]
Length = 1871
Score = 35.2 bits (79), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 292 SMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRC 331
S V P+ TC Q++SC AC+ S +C WC + RC
Sbjct: 479 SEKQVSQLPVETCEQYQSCAACLGSG-DPHCGWCVLRHRC 517
Score = 33.6 bits (75), Expect = 5.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRC 331
Q SC C+ +D FNC WC RC
Sbjct: 789 QRPSCGLCLKADPRFNCGWCISEHRC 814
>pir||A60165 sodium channel protein - fruit fly (Drosophila melanogaster)
(fragments)
Length = 1321
Score = 35.2 bits (79), Expect = 1.7
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 145 GHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQ 204
GHPL IT T FI +I M+ Y+A ++ NFN + + + D+ +F ++
Sbjct: 1171 GHPLLAITYFTS-FI----IISYMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIR 1225
Query: 205 W 205
W
Sbjct: 1226 W 1226
>emb|CAA32571.1| (X14398) sodium channel protein [Drosophila melanogaster]
Length = 361
Score = 35.2 bits (79), Expect = 1.7
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 145 GHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQ 204
GHPL IT T FI +I M+ Y+A ++ NFN + + + D+ +F ++
Sbjct: 211 GHPLLAITYFTS-FI----IISYMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIR 265
Query: 205 W 205
W
Sbjct: 266 W 266
>gb|AAF59394.1| (AE003846) plexA gene product [Drosophila melanogaster]
Length = 1945
Score = 34.0 bits (76), Expect = 3.9
Identities = 22/71 (30%), Positives = 29/71 (39%), Gaps = 4/71 (5%)
Query: 304 CLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWDGTMGCAQEAEGQDVRGLPGM 363
C H SC C+SS+ F C WC RC+ D + + G R PG
Sbjct: 672 CSTHSSCTRCVSSE--FPCDWCVEAHRCT--HDTAENCRNDILVTGVSRIGPSYRSGPGF 727
Query: 364 RTTTSASPDTS 374
T +A+ D S
Sbjct: 728 CPTINATGDGS 738
>ref|NP_061267.1| plexin C1; viral-encoded semaphorin protein receptor [Mus musculus]
gb|AAF01334.1|AF190578_1 (AF190578) receptor for viral-encoded semaphorin protein [Mus
musculus]
Length = 1574
Score = 34.0 bits (76), Expect = 3.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS 332
+T+ V P+ C + +SC C+++ +C WC LQRC+
Sbjct: 441 LTAGKEVRRIPVANCSKRKSCSECLAA-ADPHCGWCLPLQRCT 482
>pir||T13937 plexin A - fruit fly (Drosophila melanogaster)
gb|AAD09425.1| (AF106932) plexin A [Drosophila melanogaster]
Length = 1945
Score = 34.0 bits (76), Expect = 3.9
Identities = 22/71 (30%), Positives = 29/71 (39%), Gaps = 4/71 (5%)
Query: 304 CLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWDGTMGCAQEAEGQDVRGLPGM 363
C H SC C+SS+ F C WC RC+ D + + G R PG
Sbjct: 672 CSTHSSCTRCVSSE--FPCDWCVEAHRCT--HDTAENCRNDILVTGVSRIGPSYRSGPGF 727
Query: 364 RTTTSASPDTS 374
T +A+ D S
Sbjct: 728 CPTINATGDGS 738
>ref|NP_032909.1| plexin 3 [Mus musculus]
pir||JC4976 plexin 3 precursor - mouse
dbj|BAA13190.1| (D86950) plexin 3 [Mus musculus]
Length = 1872
Score = 34.0 bits (76), Expect = 3.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 292 SMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRC 331
S V P+ TC Q+ SC AC+ S +C WC + RC
Sbjct: 480 SEKQVSQLPVETCEQYLSCAACLGSG-DPHCGWCVLQHRC 518
Score = 33.6 bits (75), Expect = 5.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRC 331
Q SC C+ +D FNC WC RC
Sbjct: 790 QRPSCGLCLKADPRFNCGWCISEHRC 815
>pir||JC4975 plexin 2 precursor - mouse
dbj|BAA13189.1| (D86949) plexin 2 [Mus musculus]
Length = 1884
Score = 33.6 bits (75), Expect = 5.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWD 343
V S V P+ +C Q+ +C C+SS +C WC + CS D+ ++ W+
Sbjct: 487 VMSERQVTRVPVESCEQYTTCGECLSSG-DPHCGWCALHNMCSRR-DKCQRAWE 538
Score = 33.2 bits (74), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRCS 332
Q SC C+ +D F C WC +RC+
Sbjct: 797 QRESCGLCLKADHKFECGWCSGERRCT 823
>ref|NP_032907.1| plexin 1 [Mus musculus]
pir||JC4980 plexin 1 precursor - mouse
dbj|BAA13188.1| (D86948) plexin 1 [Mus musculus]
Length = 1894
Score = 33.2 bits (74), Expect = 6.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 308 RSCDACMSSDLTFNCSWCHVLQRCS 332
+SC C+ +D F C WC +RCS
Sbjct: 812 QSCGLCLKADPRFECGWCVAERRCS 836
>emb|CAB57274.1| (X87832) NOV/plexin-A1 protein [Homo sapiens]
Length = 1754
Score = 32.8 bits (73), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 309 SCDACMSSDLTFNCSWCHVLQRCS 332
SC C+ +D F C WC +RCS
Sbjct: 793 SCGLCLKADPRFECGWCVAERRCS 816
>sp|Q91660|GLI3_XENLA ZINC FINGER PROTEIN GLI3 (NEURAL SPECIFIC DNA BINDING PROTEIN
XGLI3) (XGLI-3)
gb|AAA98466.1| (U42461) neural specific DNA binding protein [Xenopus laevis]
Length = 1569
Score = 32.8 bits (73), Expect = 8.8
Identities = 28/97 (28%), Positives = 44/97 (44%), Gaps = 14/97 (14%)
Query: 217 GSFTFQAALHHDGRIVFAYKEIPMSVPE----ISSSQHPVKTGLSDAFMILNPSPDVPES 272
GS+ AA + FAY+ P+S+ + I S QH + + + +L+P+P P
Sbjct: 335 GSYGHLAASAISPALNFAYQPTPVSLQQMHQQIMSRQHSIGSAFGHSPPLLHPAPTFPSQ 394
Query: 273 RR----RSIFEYHRIELDPS------KVTSMSAVEFT 299
R S+ ++ + PS K TS SAV T
Sbjct: 395 RTIPGIPSVLNPVQVSIGPSEAAQQNKPTSESAVSST 431
>pir||I51553 Plexin - African clawed frog
dbj|BAA07374.1| (D38175) plexin [Xenopus laevis]
Length = 1905
Score = 32.8 bits (73), Expect = 8.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 300 PLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS 332
P+ +C Q+ SCD C+ S +C WC + CS
Sbjct: 502 PVESCEQYESCDTCLGS-RDPHCGWCVLHNMCS 533
Database: nr
Number of letters in database: 183,345,511
Number of sequences in database: 582,290
Lambda K H
0.317 0.134 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188714632
Number of Sequences: 582290
Number of extensions: 8137700
Number of successful extensions: 17241
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 17199
Number of HSP's gapped (non-prelim): 45
length of query: 502
length of database: 183,345,511
effective HSP length: 54
effective length of query: 448
effective length of database: 151,901,851
effective search space: 68052029248
effective search space used: 68052029248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 73 (32.8 bits)
