Score E
Sequences producing significant alignments: (bits) Value
ref|NP_006279.1| Thy-1 cell surface antigen; Thy-1 T-cell a... 280 5e-75
emb|CAB82306.1| (AL161958) hypothetical protein [Homo sapie... 277 4e-74
sp|O62643|THY1_MACMU THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR ... 273 7e-73
emb|CAB44008.1| (AJ238589) Thy-1 protein [Cavia porcellus] 219 1e-56
ref|NP_036805.1| thymus cell surface antigen [Rattus norveg... 187 6e-47
emb|CAA26931.1| (X03152) thy-1 antigen [Rattus norvegicus] 186 1e-46
ref|NP_033408.1| thymus cell antigen 1, theta [Mus musculus... 182 1e-45
gb|AAA42242.1| (M10666) thy-1 glycoprotein [Rattus norvegic... 163 1e-39
prf||0902236A antigen thy1 [Rattus norvegicus] 161 4e-39
emb|CAA26549.1| (X02772) Thy 1.2 antigen [Mus musculus] 143 8e-34
sp|Q07212|THY1_CHICK THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR ... 133 1e-30
gb|AAB26353.1| (S59749) 5E10 antigen, Thy-1 [human, Peptide... 105 3e-22
gb|AAD40573.1|AF103747_1 (AF103747) Thy-1 [Canis familiaris] 99 2e-20
gb|AAB47020.1| (S80124) T-cell rececptor alpha chain [mice,... 38 0.047
gb|AAF78250.1|AF276998_1 (AF276998) junctional adhesion mol... 35 0.41
dbj|BAA02816.1| (D13655) T cell receptor delta chain [Bos t... 35 0.53
gb|AAA64783.1| (U23509) T cell receptor, variable region [M... 34 0.70
sp|O88792|JAM1_MOUSE JUNCTIONAL ADHESION MOLECULE PRECURSOR... 34 0.91
pir||A27632 T-cell receptor alpha chain precursor V region ... 33 1.6
pir||B30583 T-cell receptor delta chain precursor V region ... 32 2.7
ref|NP_002002.1| fibroblast growth factor receptor 4 [Homo ... 32 2.7
emb|CAB75718.1| (X68559) acidic fibroblast growth factor [H... 32 2.7
gb|AAA63397.1| (M38102) T-cell receptor alpha [Mus musculus] 32 3.5
gb|AAA38257.1| (M17858) Ig mu heavy chain V-J3-region [Mus ... 32 3.5
gb|AAD51405.1| (AF167162) unknown [Candida albicans] 32 4.6
gb|AAB07717.1| (U51444) T cell receptor V-alpha 3.1 [Homo s... 31 6.0
gb|AAA39124.1| (M19915) immunoglobulin lambda-chain [Mus mu... 31 6.0
gb|AAA62835.1| (M59710) carcinoembryonic antigen [Homo sapi... 31 7.9
emb|CAA44204.1| (X62329) T cell receptor V-alpha J-alpha [... 31 7.9
emb|CAA34474.1| (X16455) pCEA80-11 protein (647 AA) [Homo s... 31 7.9
sp|P06731|CCEM_HUMAN CARCINOEMBRYONIC ANTIGEN PRECURSOR (CE... 31 7.9
pir||A28333 carcinoembryonic antigen-related protein (clone... 31 7.9
gb|AAA51963.1| (M15042) carcinoembryonic antigen precursor ... 31 7.9
gb|AAA51972.1| (M16234) carcinoembryonic antigen [Homo sapi... 31 7.9
gb|AAA51968.1| (M17191) carcinoembronyic antigen [Homo sapi... 31 7.9
Alignments
>ref|NP_006279.1| Thy-1 cell surface antigen; Thy-1 T-cell antigen [Homo sapiens]
sp|P04216|THY1_HUMAN THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR (THY-1 ANTIGEN) (CDW90) (CD90
ANTIGEN)
pir||TDHU Thy-1 membrane glycoprotein precursor - human
gb|AAA61180.1| (M11749) Thy-1 [Homo sapiens]
Length = 161
Score = 280 bits (709), Expect = 5e-75
Identities = 141/161 (87%), Positives = 141/161 (87%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
Sbjct: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
Sbjct: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
TVLRDKLVKCEGI QATDFMSL
Sbjct: 121 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL 161
>emb|CAB82306.1| (AL161958) hypothetical protein [Homo sapiens]
gb|AAG13904.1|AF261093_1 (AF261093) Thy-1 glycoprotein [Homo sapiens]
Length = 161
Score = 277 bits (702), Expect = 4e-74
Identities = 140/161 (86%), Positives = 141/161 (86%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK
Sbjct: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVLFGTVGVPEHTYRSRTNFTSKY+MKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV
Sbjct: 61 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
TVLRDKLVKCEGI QATDFMSL
Sbjct: 121 TVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFMSL 161
>sp|O62643|THY1_MACMU THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR (THY-1 ANTIGEN) (CDW90) (CD90
ANTIGEN)
gb|AAC05640.1| (U93310) Thy1 membrane protein [Macaca mulatta]
Length = 161
Score = 273 bits (691), Expect = 7e-73
Identities = 138/161 (85%), Positives = 140/161 (86%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENT+SSPIQYEFSLTRETKK
Sbjct: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTTSSPIQYEFSLTRETKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVLFGTVGVPEHTYRSRTNFTSKY+MKVLYLSAFT KDEGTYTC LHHSGHSPPISSQNV
Sbjct: 61 HVLFGTVGVPEHTYRSRTNFTSKYNMKVLYLSAFTXKDEGTYTCXLHHSGHSPPISSQNV 120
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
TVLRDKLVKCEGI QATDFMSL
Sbjct: 121 TVLRDKLVKCEGISLLAQNTSWLXLLLLSLSLLQATDFMSL 161
>emb|CAB44008.1| (AJ238589) Thy-1 protein [Cavia porcellus]
Length = 161
Score = 219 bits (553), Expect = 1e-56
Identities = 111/161 (68%), Positives = 124/161 (76%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MN AI +ALLL VLQVSRGQKVTSLTACLV+Q+LRLDCRHENT++ PIQYEFSLTRE KK
Sbjct: 1 MNPAIGLALLLAVLQVSRGQKVTSLTACLVNQNLRLDCRHENTTTLPIQYEFSLTREKKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVLFGTVGVPEH YRSRTN TS Y++KVLYL+ FT+KDEGTYTC LH SG + +NV
Sbjct: 61 HVLFGTVGVPEHAYRSRTNLTSNYNIKVLYLANFTTKDEGTYTCELHISGQPSSPNYRNV 120
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
+VLRDKLVKCEGI QATDF+SL
Sbjct: 121 SVLRDKLVKCEGISLLAQNTSWLLLLLLSLSLLQATDFVSL 161
>ref|NP_036805.1| thymus cell surface antigen [Rattus norvegicus]
sp|P01830|THY1_RAT THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR (THY-1 ANTIGEN) (CDW90)
pir||TDRT thy-1 membrane glycoprotein precursor - rat
emb|CAA26929.1| (X03150) thy-1 precursor [Rattus norvegicus]
emb|CAA26033.1| (X02002) thy-1 protein [Rattus norvegicus]
prf||1103300A antigen thy1 [Rattus norvegicus]
Length = 161
Score = 187 bits (470), Expect = 6e-47
Identities = 96/161 (59%), Positives = 114/161 (70%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MN ISI LLL+VLQ+SRGQ+V SLTACLV+Q+LRLDCRHEN ++ PIQ+EFSLTRE KK
Sbjct: 1 MNPVISITLLLSVLQMSRGQRVISLTACLVNQNLRLDCRHENNTNLPIQHEFSLTREKKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVL GT+GVPEHTYRSR N S +KVL L+ FT+KDEG Y C L SG +P S++ +
Sbjct: 61 HVLSGTLGVPEHTYRSRVNLFSDRFIKVLTLANFTTKDEGDYMCELRVSGQNPTSSNKTI 120
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
V+RDKLVKC GI QATDF+SL
Sbjct: 121 NVIRDKLVKCGGISLLVQNTSWLLLLLLSLSFLQATDFISL 161
>emb|CAA26931.1| (X03152) thy-1 antigen [Rattus norvegicus]
Length = 161
Score = 186 bits (467), Expect = 1e-46
Identities = 95/161 (59%), Positives = 114/161 (70%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MN ISI LLL+VLQ+SRGQ+V SLTACLV+Q+LRLDCRHEN ++ PIQ+EFSLTRE KK
Sbjct: 1 MNPVISITLLLSVLQMSRGQRVISLTACLVNQNLRLDCRHENNTNLPIQHEFSLTREKKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVL GT+GVP+HTYRSR N S +KVL L+ FT+KDEG Y C L SG +P S++ +
Sbjct: 61 HVLSGTLGVPQHTYRSRVNLFSDRFIKVLTLANFTTKDEGDYMCELRVSGQNPTSSNKTI 120
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
V+RDKLVKC GI QATDF+SL
Sbjct: 121 NVIRDKLVKCGGISLLVQNTSWLLLLLLSLSFLQATDFISL 161
>ref|NP_033408.1| thymus cell antigen 1, theta [Mus musculus]
sp|P01831|THY1_MOUSE THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR (THY-1 ANTIGEN) (CDW90) (CD90
ANTIGEN)
pir||TDMS Thy-1 membrane glycoprotein precursor - mouse
emb|CAA26930.1| (X03151) put. mature thy-1 [Mus musculus]
gb|AAA40440.1| (M10246) membrane glycoprotein [Mus musculus]
gb|AAA40441.1| (M11160) Thy-1 antigen precursor [Mus musculus]
gb|AAA40443.1| (M12379) Thy-1.2 glycoprotein [Mus musculus]
Length = 162
Score = 182 bits (458), Expect = 1e-45
Identities = 95/162 (58%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHEN-TSSSPIQYEFSLTRETK 59
MN AIS+ALLL+VLQVSRGQKVTSLTACLV+Q+LRLDCRHEN T + IQ+EFSLTRE +
Sbjct: 1 MNPAISVALLLSVLQVSRGQKVTSLTACLVNQNLRLDCRHENNTKDNSIQHEFSLTREKR 60
Query: 60 KHVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQN 119
KHVL GT+G+PEHTYRSR +++ ++KVL L+ FT+KDEG Y C L SG +P S+++
Sbjct: 61 KHVLSGTLGIPEHTYRSRVTLSNQPYIKVLTLANFTTKDEGDYFCELQVSGANPMSSNKS 120
Query: 120 VTVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
++V RDKLVKC GI QA DF+SL
Sbjct: 121 ISVYRDKLVKCGGISLLVQNTSWMLLLLLSLSLLQALDFISL 162
>gb|AAA42242.1| (M10666) thy-1 glycoprotein [Rattus norvegicus]
gb|AAA42243.1| (M18002) Thy-1 protein precursor [Rattus norvegicus]
Length = 142
Score = 163 bits (408), Expect = 1e-39
Identities = 82/142 (57%), Positives = 98/142 (68%)
Query: 20 QKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGVPEHTYRSRTN 79
Q+V SLTACLV+Q+LRLDCRHEN ++ PIQ+EFSLTRE KKHVL GT+GVPEHTYRSR N
Sbjct: 1 QRVISLTACLVNQNLRLDCRHENNTNLPIQHEFSLTREKKKHVLSGTLGVPEHTYRSRVN 60
Query: 80 FTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLRDKLVKCEGIXXXXXX 139
S +KVL L+ FT+KDEG Y C L SG +P S++ + V+RDKLVKC GI
Sbjct: 61 LFSDRFIKVLTLANFTTKDEGDYMCELRVSGQNPTSSNKTINVIRDKLVKCGGISLLVQN 120
Query: 140 XXXXXXXXXXXXXXQATDFMSL 161
QATDF+SL
Sbjct: 121 TSWLLLLLLSLSFLQATDFISL 142
>prf||0902236A antigen thy1 [Rattus norvegicus]
Length = 122
Score = 161 bits (403), Expect = 4e-39
Identities = 80/122 (65%), Positives = 96/122 (78%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MN ISI LLL+VLQ+SRGQ+V SLTACLV+Q+LRLDCRHEN ++ PIQ+EFSLTRE KK
Sbjct: 1 MNPVISITLLLSVLQMSRGQRVISLTACLVNQNLRLDCRHENNTNLPIQHEFSLTREKKK 60
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
HVL GT+GVPEHTYRSR N S +KVL L+ FT+KDEG Y C L SG +P S++ +
Sbjct: 61 HVLSGTLGVPEHTYRSRVNLFSDRFIKVLTLANFTTKDEGDYMCELRVSGQNPTSSNKTI 120
Query: 121 TV 122
V
Sbjct: 121 NV 122
>emb|CAA26549.1| (X02772) Thy 1.2 antigen [Mus musculus]
Length = 112
Score = 143 bits (358), Expect = 8e-34
Identities = 70/112 (62%), Positives = 91/112 (80%), Gaps = 1/112 (0%)
Query: 14 LQVSRGQKVTSLTACLVDQSLRLDCRHEN-TSSSPIQYEFSLTRETKKHVLFGTVGVPEH 72
+QVSRGQKVTSLTACLV+Q+LRLDCRHEN T + IQ+EFSLTRE +KHVL GT+G+PEH
Sbjct: 1 MQVSRGQKVTSLTACLVNQNLRLDCRHENNTKDNSIQHEFSLTREKRKHVLSGTLGIPEH 60
Query: 73 TYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLR 124
TYRSR +++ ++KVL L+ FT+KDEG Y C L SG +P S+++++V R
Sbjct: 61 TYRSRVTLSNQPYIKVLTLANFTTKDEGDYFCELQVSGANPMSSNKSISVYR 112
>sp|Q07212|THY1_CHICK THY-1 MEMBRANE GLYCOPROTEIN PRECURSOR (THY-1 ANTIGEN)
pir||A48975 Thy-1 glycoprotein - chicken
gb|AAA11889.1| (S47368) Thy-1 glycoprotein [chickens, Peptide, 160 aa]
gb|AAC42216.1| (L14924) Thy-1 glycoprotein [Gallus gallus]
prf||1906310A thy-1 glycoprotein [Gallus gallus]
Length = 160
Score = 133 bits (331), Expect = 1e-30
Identities = 68/161 (42%), Positives = 98/161 (60%), Gaps = 1/161 (0%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
MN +SIA++LTVLQ + Q + L+ACL+ QSLR+DCR+EN +S+P+ YEFSLTR+ +K
Sbjct: 1 MNPTVSIAVILTVLQAAHCQMIRDLSACLLGQSLRVDCRYENKTSNPLTYEFSLTRQ-QK 59
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNV 120
H++ T+ V E+ YR+R N T ++ LYL +FT+ DEG Y C L + +N+
Sbjct: 60 HIIQSTISVSENVYRNRANVTMHKNLVCLYLHSFTTSDEGVYMCELKATNDYTGNQIKNI 119
Query: 121 TVLRDKLVKCEGIXXXXXXXXXXXXXXXXXXXXQATDFMSL 161
TV++DKL KC + QA DF+SL
Sbjct: 120 TVIKDKLEKCVRLSLLIQNTSWLLLLLLSLPLLQAVDFVSL 160
>gb|AAB26353.1| (S59749) 5E10 antigen, Thy-1 [human, Peptide Partial, 54 aa]
[Homo sapiens]
Length = 54
Score = 105 bits (259), Expect = 3e-22
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFS 53
MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFS
Sbjct: 1 MNLAISIALLLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFS 53
>gb|AAD40573.1|AF103747_1 (AF103747) Thy-1 [Canis familiaris]
Length = 60
Score = 99.5 bits (244), Expect = 2e-20
Identities = 47/60 (78%), Positives = 52/60 (86%)
Query: 65 GTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLR 124
GTVGVPEH+YRSRTNFTSKY++KVLYLS FT+KDEGTYTC L SG P SS+NVTVLR
Sbjct: 1 GTVGVPEHSYRSRTNFTSKYNIKVLYLSGFTTKDEGTYTCELRLSGQPPITSSKNVTVLR 60
>gb|AAB47020.1| (S80124) T-cell rececptor alpha chain [mice, BALB/c B cell line
3B3, Peptide, 268 aa] [Mus sp.]
Length = 268
Score = 38.3 bits (87), Expect = 0.047
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 3 LAISIALLLTVLQVSRGQKVTSLTACLVDQ---SLRLDCRHENTSSSPIQYEFSLTRETK 59
L+ + LL T + +GQ+V A LV Q + L C +T++ +Q+ + +
Sbjct: 5 LSSLLGLLCTQVCWVKGQQVQQSPASLVLQEGENAELQCNFSSTATQ-LQWFYQRPGGSL 63
Query: 60 KHVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSG-HSPPISSQ 118
+L+ G +HT R + +K L++S+ D GTY CA+ +G ++ ++
Sbjct: 64 VSLLYNPSGT-KHTGRLTSTTVTKERRSSLHISSSQITDSGTYFCAMEDTGANTGKLTFG 122
Query: 119 NVTVLR 124
+ T+LR
Sbjct: 123 HGTILR 128
>gb|AAF78250.1|AF276998_1 (AF276998) junctional adhesion molecule JAM [Rattus norvegicus]
Length = 300
Score = 35.2 bits (79), Expect = 0.41
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 3 LAISIALLLTVLQVSRGQKVTSLTACLVDQ--SLRLDCRHENTSSSPIQYEFSLTRETKK 60
L + +++L L +G + TA V + S++L C + SS ++++F T
Sbjct: 12 LFLFTSMILGSLVQGKGSVYSPQTAVQVPENDSVKLPCIYSGFSSPRVEWKFVQGSTTAL 71
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSG 110
+ VP Y R F+S + S+ T KD G YTC + G
Sbjct: 72 VCYNNQITVP---YADRVTFSSSG----ITFSSVTRKDNGEYTCMVSEDG 114
>dbj|BAA02816.1| (D13655) T cell receptor delta chain [Bos taurus]
Length = 144
Score = 34.8 bits (78), Expect = 0.53
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 20 QKVT---SLTACLVDQSLRLDCRHENTSSSPIQYEF-SLTRETKKHVL-FGTVGVPEHTY 74
QKVT S + V QS+ L+CR+E + S+ Y + L +V+ G+
Sbjct: 22 QKVTQDRSDVSSHVGQSVTLNCRYETSWSTYYLYWYKQLPNGQMTYVIRQGSEVTNARKD 81
Query: 75 RSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLRDKLVKCEG 132
R NF L +SA +D Y CAL SG+ + Q + + DKL+ +G
Sbjct: 82 RYSVNFKKADKSISLTISALQLEDSAKYFCAL--SGYGGTLGVQRIVGMTDKLIFGKG 137
>gb|AAA64783.1| (U23509) T cell receptor, variable region [Mus musculus]
Length = 109
Score = 34.4 bits (77), Expect = 0.70
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 7 IALLLTVLQVSRGQKVTSLTACLVDQ---SLRLDCRHENTSSSPIQYEFSLTRETKKHVL 63
+ LL T + +GQ+V A LV Q + L C +T++ +Q+ + + +L
Sbjct: 9 LGLLCTQVCWVKGQQVQQTPASLVLQEGENAELQCNFSSTATR-LQWFYQRPGGSLVSLL 67
Query: 64 FGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCAL 106
+ G +HT R + +K L++S+ D GTY CA+
Sbjct: 68 YNPSGT-KHTGRLISTTVTKERRSSLHISSSQITDSGTYFCAM 109
>sp|O88792|JAM1_MOUSE JUNCTIONAL ADHESION MOLECULE PRECURSOR (JAM)
gb|AAC32982.1| (U89915) junctional adhesion molecule [Mus musculus]
Length = 300
Score = 34.0 bits (76), Expect = 0.91
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 3 LAISIALLLTVLQVSRGQKVTSLTACLV--DQSLRLDCRHENTSSSPIQYEFSLTRETKK 60
L + +++L L +G T+ + V ++S++L C + SS ++++F T
Sbjct: 12 LFLFTSMILGSLVQGKGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTAL 71
Query: 61 HVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSG 110
+ P Y R F+S + S+ T KD G YTC + G
Sbjct: 72 VCYNSQITAP---YADRVTFSSSG----ITFSSVTRKDNGEYTCMVSEEG 114
>pir||A27632 T-cell receptor alpha chain precursor V region (D6) - mouse
(fragment)
gb|AAA18410.1| (M20875) T-cell receptor alpha-chain precursor [Mus musculus]
Length = 132
Score = 33.2 bits (74), Expect = 1.6
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 3 LAISIALLLTVLQVSRGQKVTSLTACLVDQ---SLRLDCRHENTSSSPIQYEFSLTRETK 59
L+ + LL T + +GQ+V A LV Q + L C +TS + +Q+ + +
Sbjct: 5 LSSLLGLLCTQVCWVKGQQVQQSPASLVLQEGENAELQCNF-STSLNSMQWFYQRPGGSL 63
Query: 60 KHVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCAL 106
+ + G +H+ R + K L++S+ + D GTY CAL
Sbjct: 64 VSLFYNPSGT-KHSGRLTSTTVIKERRSSLHISSSQTTDSGTYLCAL 109
>pir||B30583 T-cell receptor delta chain precursor V region (KN25-D4) - mouse
(fragment)
gb|AAA40402.1| (M26299) T cell receptor delta-chain [Mus musculus]
Length = 110
Score = 32.5 bits (72), Expect = 2.7
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 7 IALLLTVLQVSRGQKVTSLTACLVDQ---SLRLDCRHENTSSSPIQYEFSLTRETKKHVL 63
+ LL T + +GQ+V A LV Q + L C +T++ +Q+ + + +L
Sbjct: 9 LGLLCTQVCWVKGQQVQQSPASLVLQEGENAELQCNFSSTATR-LQWFYQRPGGSLVSLL 67
Query: 64 FGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCAL 106
G +HT R + +K L++S+ D GTY CA+
Sbjct: 68 SNPSGT-KHTGRLTSTTVTKERRGSLHISSSQITDSGTYLCAI 109
>ref|NP_002002.1| fibroblast growth factor receptor 4 [Homo sapiens]
sp|P22455|FGR4_HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 4 PRECURSOR (FGFR-4)
pir||TVHUF4 fibroblast growth factor receptor 4 precursor - human
emb|CAA40490.1| (X57205) fibroblast growth factor receptor [Homo sapiens]
Length = 802
Score = 32.5 bits (72), Expect = 2.7
Identities = 30/108 (27%), Positives = 53/108 (48%), Gaps = 19/108 (17%)
Query: 26 TACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVL-----FGTVGVPEHTYRSRTNF 80
T +V + L C+ + + IQ+ KH++ FG VG P + +T
Sbjct: 259 TTAVVGSDVELLCKVYSDAQPHIQW--------LKHIVINGSSFGAVGFP-YVQVLKTAD 309
Query: 81 TSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQN--VTVLRDK 126
+ ++VLYL +++D G YTC +G+S +S Q+ +TVL ++
Sbjct: 310 INSSEVEVLYLRNVSAEDAGEYTCL---AGNSIGLSYQSAWLTVLPEE 354
>emb|CAB75718.1| (X68559) acidic fibroblast growth factor [Homo sapiens]
Length = 175
Score = 32.5 bits (72), Expect = 2.7
Identities = 30/108 (27%), Positives = 53/108 (48%), Gaps = 19/108 (17%)
Query: 26 TACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVL-----FGTVGVPEHTYRSRTNF 80
T +V + L C+ + + IQ+ KH++ FG VG P + +T
Sbjct: 17 TTAVVGSDVELLCKVYSDAQPHIQW--------LKHIVINGSSFGAVGFP-YVQVLKTAD 67
Query: 81 TSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISSQN--VTVLRDK 126
+ ++VLYL +++D G YTC +G+S +S Q+ +TVL ++
Sbjct: 68 INSSEVEVLYLRNVSAEDAGEYTCL---AGNSIGLSYQSAWLTVLPEE 112
>gb|AAA63397.1| (M38102) T-cell receptor alpha [Mus musculus]
Length = 110
Score = 32.1 bits (71), Expect = 3.5
Identities = 25/91 (27%), Positives = 43/91 (46%), Gaps = 5/91 (5%)
Query: 18 RGQKVTSLTACLVDQ---SLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGVPEHTY 74
+GQ+V A LV Q + L C +T++ +Q+ + + +L G +HT
Sbjct: 2 KGQQVQQSPASLVLQEGENAELQCNFSSTATQ-LQWFYQSPGGSLVSLLSNPSGT-KHTG 59
Query: 75 RSRTNFTSKYHMKVLYLSAFTSKDEGTYTCA 105
R + +K L++S+ + D GTY CA
Sbjct: 60 RLTSTTVTKERRSSLHISSSQTTDSGTYLCA 90
>gb|AAA38257.1| (M17858) Ig mu heavy chain V-J3-region [Mus musculus]
Length = 125
Score = 32.1 bits (71), Expect = 3.5
Identities = 22/92 (23%), Positives = 36/92 (38%), Gaps = 12/92 (13%)
Query: 33 SLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGVPEHTYRSRTNFTSKYHMKVLY-- 90
S+++ C+ + S E ++ H L + TN+T K+ K +
Sbjct: 17 SVKISCKATGYTFSSYWIEXXWVKQRPGHGLEWIGEILPXXGSGSTNYTEKFKGKATFTA 76
Query: 91 ----------LSAFTSKDEGTYTCALHHSGHS 112
LS+ TS+D Y CA H+ G S
Sbjct: 77 DTSSNTAFMQLSSLTSEDSAVYYCARHYYGSS 108
>gb|AAD51405.1| (AF167162) unknown [Candida albicans]
Length = 956
Score = 31.7 bits (70), Expect = 4.6
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 10 LLTVLQVSRGQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGV 69
LL +LQV+ +K TS L + SLRL + S ++ E S+ E+ +L + +
Sbjct: 370 LLKILQVNYSKKETSFIMSLQNISLRLSSVPKVARLSALRAELSIINES---ILPSEIDI 426
Query: 70 PEHTYRSRTNFTSKYHMKVLYLS-----AFTSKDEGTYTCALHHSGHS---PPISSQNVT 121
P+ +N K+H K+L L+ S + Y + + P S QN
Sbjct: 427 PQ-LLPVTSNKNKKFH-KILKLNINEACVLNSAERVPYLLLIEYLSDEIDFNPFSDQNQK 484
Query: 122 VLRDKLVKCE 131
++ D + K E
Sbjct: 485 IINDCVRKPE 494
>gb|AAB07717.1| (U51444) T cell receptor V-alpha 3.1 [Homo sapiens]
Length = 139
Score = 31.3 bits (69), Expect = 6.0
Identities = 23/117 (19%), Positives = 52/117 (43%), Gaps = 5/117 (4%)
Query: 1 MNLAISIALLLTVLQVSR-----GQKVTSLTACLVDQSLRLDCRHENTSSSPIQYEFSLT 55
M + ++L++ LQ++R G++ + ++ ++C ++ + ++ Y +
Sbjct: 1 METLLGVSLVILWLQLARVNSQQGEEDPQALSIQEGENATMNCSYKTSINNLQWYRQNSG 60
Query: 56 RETKKHVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHS 112
R +L + +H+ R R + L ++A + D +Y CA HSG S
Sbjct: 61 RGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATGHSGGS 117
>gb|AAA39124.1| (M19915) immunoglobulin lambda-chain [Mus musculus]
Length = 135
Score = 31.3 bits (69), Expect = 6.0
Identities = 31/126 (24%), Positives = 57/126 (44%), Gaps = 10/126 (7%)
Query: 7 IALLLTVLQVSRG---QKVTSLTACLVD---QSLRLDCRHENTSSSPIQYEFSLTRETKK 60
I+L+L++L +S G Q V + + L +++ L CR N + + Y + +E
Sbjct: 4 ISLILSLLALSSGAISQAVVTQESALTTSPGETVTLTCRSSNGAVTTSNYA-NWVQEKPD 62
Query: 61 HVLFGTVGVPEHT---YRSRTNFTSKYHMKVLYLSAFTSKDEGTYTCALHHSGHSPPISS 117
H+ G +G + +R + + L ++ ++DE Y CAL +S H
Sbjct: 63 HLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHLVFGGG 122
Query: 118 QNVTVL 123
+TVL
Sbjct: 123 TKLTVL 128
>gb|AAA62835.1| (M59710) carcinoembryonic antigen [Homo sapiens]
Length = 702
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 458 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDK 516
>emb|CAA44204.1| (X62329) T cell receptor V-alpha J-alpha [Rattus rattus]
Length = 133
Score = 30.9 bits (68), Expect = 7.9
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Query: 42 NTSSSPIQYEFSLTRETKKHVLFGTVGVPEHTYRSRTNFTSKYHMKVLYLSAFTSKDEGT 101
+T+ +Q+ R + H+ + G E+ R ++ F SK L++S +D GT
Sbjct: 46 STTMRNVQWFRQDPRGSLIHLFYLASGTKENG-RLKSTFDSKERYSTLHISGAQLEDSGT 104
Query: 102 YTCALHHS 109
Y CA +S
Sbjct: 105 YFCAAENS 112
>emb|CAA34474.1| (X16455) pCEA80-11 protein (647 AA) [Homo sapiens]
Length = 697
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 453 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDK 511
>sp|P06731|CCEM_HUMAN CARCINOEMBRYONIC ANTIGEN PRECURSOR (CEA) (MECONIUM ANTIGEN 100)
(CD66E ANTIGEN)
pir||A36319 carcinoembryonic antigen precursor - human
gb|AAB59513.1| (M17303) carcinoembryonic antigen precursor [Homo sapiens]
gb|AAA51967.1| (M29540) carcinoembryonic antigen [Homo sapiens]
Length = 702
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 458 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDK 516
>pir||A28333 carcinoembryonic antigen-related protein (clone eLV7) - human
(fragment)
Length = 286
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 143 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSADVPKPSISSNNSKPVEDK 201
>gb|AAA51963.1| (M15042) carcinoembryonic antigen precursor [Homo sapiens]
Length = 698
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 454 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDK 512
>gb|AAA51972.1| (M16234) carcinoembryonic antigen [Homo sapiens]
Length = 372
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 128 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDK 186
>gb|AAA51968.1| (M17191) carcinoembronyic antigen [Homo sapiens]
Length = 287
Score = 30.9 bits (68), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 17/59 (28%)
Query: 85 HMKVLYLSAFTSKDEGTYTCALHH--SGHS---------------PPISSQNVTVLRDK 126
H + L++S T K+ G YTC ++ SGHS P ISS N + DK
Sbjct: 143 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSADVPKPSISSNNSKPVEDK 201
Database: nr
Number of letters in database: 183,279,875
Number of sequences in database: 582,086
Lambda K H
0.319 0.130 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44530926
Number of Sequences: 582086
Number of extensions: 1558150
Number of successful extensions: 9124
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 9102
Number of HSP's gapped (non-prelim): 45
length of query: 161
length of database: 183,279,875
effective HSP length: 56
effective length of query: 105
effective length of database: 150,683,059
effective search space: 15821721195
effective search space used: 15821721195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 68 (30.9 bits)
