Protein Information Pos. Myristoylation Motif Score Prob.FPP Prediction
PIR - 94262 nef protein - human immunodeficiency virus type 1 CD BLAST 2 GGKWSKSSVVGWPTVRE
5.513
Score Profile
5.513 = &#931 of 5.752
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.209
V 7&9 H 8-10 F 3-5
-0.009 -0.021 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
23198436 truncated nef protein [Human immunodeficiency virus 1] CD BLAST 2 GGKWSKNVGWPTIRERM
4.298
Score Profile
4.298 = &#931 of 4.447
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.011
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.138
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
1463018 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKSSIVGWPQVRE
5.399
Score Profile
5.399 = &#931 of 5.795
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.168
V 7&9 H 8-10 F 3-5
-0.008 -0.220 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6694562 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKRSMIGWPTIRE
4.468
Score Profile
4.468 = &#931 of 5.077
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.334
V 7&9 H 8-10 F 3-5
-0.006 -0.137 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.132
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
18201603 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GSKCSKSSVVGWPAVRE
3.719
Score Profile
3.719 = &#931 of 5.456
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.192
V 7&9 H 8-10 F 3-5
-0.009 -0.021 -1.516
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
18201567 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKCSKRSMVGWPTVRE
3.576
Score Profile
3.576 = &#931 of 5.319
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.219
V 7&9 H 8-10 F 3-5
-0.006 -0.002 -1.516
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
18201517 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKCSVVGWPTIRE
4.751
Score Profile
4.751 = &#931 of 5.220
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.394
V 7&9 H 8-10 F 3-5
-0.054 -0.021 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
18201505 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSNSRVGGWSAVRE
3.999
Score Profile
3.999 = &#931 of 4.024
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.016
V 7&9 H 8-10 F 3-5
-0.009 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
18201503 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKSSVVGWPDVRE
5.613
Score Profile
5.613 = &#931 of 5.728
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.085
V 7&9 H 8-10 F 3-5
-0.009 -0.021 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
18201499 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKSRVGGWSAVRE
6.091
Score Profile
6.091 = &#931 of 6.129
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.028
V 7&9 H 8-10 F 3-5
-0.009 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
13936883 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKSSVIGGPTVRE
3.951
Score Profile
3.951 = &#931 of 4.284
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.105
V 7&9 H 8-10 F 3-5
-0.009 -0.220 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
1688162 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKRSGGGWPTVRK
6.412
Score Profile
6.412 = &#931 of 6.412
V 2&3 H 2&3 H 6-17
0.000 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
1688160 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKRSGGGWPTVRE
6.412
Score Profile
6.412 = &#931 of 6.412
V 2&3 H 2&3 H 6-17
0.000 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
5257164 Nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWAKSSVIRWQAVRE
1.584
Score Profile
1.584 = &#931 of 2.322
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.192
V 7&9 H 8-10 F 3-5
-0.009 -0.220 0.000
P 5&6 H2&5 V 2-11
0.000 -0.193 -0.125
SigEx I SigEx II SPP
0.000 0.000 0.000
0.001 RELIABLE
12004837 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSNRSGWSTVRERM
2.833
Score Profile
2.833 = &#931 of 2.853
V 2&3 H 2&3 H 6-17
0.000 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.020
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
12004833 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKRSGWFTVRERM
3.942
Score Profile
3.942 = &#931 of 4.624
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.065
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.617
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
12004777 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKRSGVGWPTVKQ
5.940
Score Profile
5.940 = &#931 of 5.974
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.034
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
12004775 truncated nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKRSGVGWPTVRE
5.928
Score Profile
5.928 = &#931 of 5.967
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.039
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6361886 Nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKCSVVGWPTIRE
4.751
Score Profile
4.751 = &#931 of 5.220
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.394
V 7&9 H 8-10 F 3-5
-0.054 -0.021 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007051 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRTGWSAVRE
6.154
Score Profile
6.154 = &#931 of 6.289
V 2&3 H 2&3 H 6-17
-0.122 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.013
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007049 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRSGWETVRE
6.751
Score Profile
6.751 = &#931 of 6.873
V 2&3 H 2&3 H 6-17
-0.122 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007047 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRSGWDTVRE
6.807
Score Profile
6.807 = &#931 of 6.929
V 2&3 H 2&3 H 6-17
-0.122 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007045 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRSGWDTVRE
6.807
Score Profile
6.807 = &#931 of 6.929
V 2&3 H 2&3 H 6-17
-0.122 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007043 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GGKWSKSSRMGWPAVRE
5.976
Score Profile
5.976 = &#931 of 6.024
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.046
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.002
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007041 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRTGWPAVRE
6.052
Score Profile
6.052 = &#931 of 6.188
V 2&3 H 2&3 H 6-17
-0.122 0.000 -0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.013
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007037 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRTGWPAVRE
6.052
Score Profile
6.052 = &#931 of 6.188
V 2&3 H 2&3 H 6-17
-0.122 0.000 -0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.013
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007035 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRMGWPAVRE
6.348
Score Profile
6.348 = &#931 of 6.627
V 2&3 H 2&3 H 6-17
-0.122 0.000 -0.046
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.110
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
6007030 nef protein [Human immunodeficiency virus type 1] CD BLAST 2 GNKWSKSSRRRWPAVRE
5.067
Score Profile
5.067 = &#931 of 6.258
V 2&3 H 2&3 H 6-17
-0.122 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -1.069
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
1177213 nef CD BLAST 2 GGKWSKSSVIGWPTVRE
4.514
Score Profile
4.514 = &#931 of 5.005
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.262
V 7&9 H 8-10 F 3-5
-0.009 -0.220 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
253613 nef product {N and C-termini, sibling clone RH-S L7} [human immunodeficiency virus type 1 HIV-1, Peptide Partial, 36 aa] CD BLAST 2 GGKWSKRGVDKWPAVRE
4.570
Score Profile
4.570 = &#931 of 4.772
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.003
V 7&9 H 8-10 F 3-5
-0.068 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.130
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
253612 nef product {N and C-termini, sibling clone RH-S L6} [human immunodeficiency virus type 1 HIV-1, Peptide Partial, 35 aa] CD BLAST 2 GGKWSKRSEDKWPAVRE
5.557
Score Profile
5.557 = &#931 of 5.815
V 2&3 H 2&3 H 6-17
0.000 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 -0.257
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
554848 nef gene product CD BLAST 2 GGKWSKSSIVGWPEVRE
5.496
Score Profile
5.496 = &#931 of 5.854
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.130
V 7&9 H 8-10 F 3-5
-0.008 -0.220 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
554786 nef CD BLAST 2 GGKWSKRSGGGWPAVRE
6.362
Score Profile
6.362 = &#931 of 6.362
V 2&3 H 2&3 H 6-17
0.000 0.000 0.000
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
328181 nef protein CD BLAST 2 GGKWSKSSMSGWPTIRE
5.800
Score Profile
5.800 = &#931 of 5.887
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.087
V 7&9 H 8-10 F 3-5
0.000 0.000 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE
326378 The nef sequence consists of an open reading frame with an undertermined 3' end. There is a putative stop codon at base-pairs 3181-3183.; putative CD BLAST 2 GGKWSKSSIVGWPEVRE
5.496
Score Profile
5.496 = &#931 of 5.854
V 2&3 H 2&3 H 6-17
0.000 0.000 -0.130
V 7&9 H 8-10 F 3-5
-0.008 -0.220 0.000
P 5&6 H2&5 V 2-11
0.000 0.000 0.000
SigEx I SigEx II SPP
0.000 0.000 0.000
0.000 RELIABLE