|
|  |
| Contact |
|
 |
|
 |
|
||
# ------------------------------------------------------------------- # # # package *-> plants <-* # ******************************* # # name of executable : plants # time of program compilation : Oct 11 2002 (15:53:39) # time of program execution : Thu Oct 24 10:14:53 2002 # version of the code : Revision: 2.1 (Date: 2002/04/05 15:38:48) # ReadAapLib: AAProperty libraryopened Number of entrys in AapLib: <682> -->All selects were switched on. Selection parameters: --------------------- 0: PToken: OC SToken: RExp: VIRIDIPLANTAE is_SToken: 0 expect: 1 -->OpenSWFile: Data file <./gpi.learn.sav> opened -->begin GPI-site evaluations -->ReadGPILib: GPI library opened INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! INFO> ReadGPILib: VARSPLIC line in entry .!! number of entries of file 1 : 388 number of accepted entries of file 1 : 388 total number of entries : 388 -->Statistic_confidence of GPILib 1 : number of accepted entries : 388 number of entries with certain GPI-site : 86 number of entries with potential GPI-site : 238 number of entries with GPI-site by similarity : 64 -->GPIStatistic_Length: GPILibNumber = 1 Lmin : 14 ( entry: PAG1_TRYBB, file: 1 ) Lmax : 32 ( entry: T06041, file: 1 ) deltaL : 5 number of intervals : 4 interval of length from to number of entries 1 14 19 25 2 20 24 183 3 25 29 151 4 30 34 29 total number of entries : 388 -->Statistic_taxonomy of GPILib 1 / total number of entries 388 1 VIRUSES 168 EUKARYOTA 120 ..METAZOA 5 ....INSECTA 113 ....VERTEBRATA 3 ......PISCES 5 ......AVES 105 ......MAMMALIA 55 ........PRIMATES 10 ..FUNGI 38 ..PROTOZOA 219 ..Viridiplantae -->degree of the polynom for fitting: 6 -->Calc_EVD_Param_PolyFit: file of values opened SSerr = 12.24452810 The 7 polynomial coefficients (starting from the lowest power on) are: beta[0] = -7.608233e+00 beta[1] = -3.064603e-01 beta[2] = -6.636068e-03 beta[3] = -9.337898e-05 beta[4] = -7.492552e-07 beta[5] = -3.064883e-09 beta[6] = -4.928117e-12 Thresholds for GPI-anchor selecting: P-site: score = 2.00 p = 2.616277e-04 S-site: score = -2.00 p = 8.924251e-04 -->All flags were switched on. -->Switch_Off_Tax: number of entries before procedure : 388 -->Flags of all entries except Viridiplantae switched off -->Switch_Off_Tax: number of entries after procedure : 219 -->Switch_Off_Len: number of entries before procedure : 219 -->Flags of all entries with AALen-GPIPos > 32 switched off -->Flags of all entries with AALen-GPIPos < 17 switched off -->Switch_Off_Len: number of entries after procedure : 219 possible largest subset found: Q = 215 possible largest subset found: Q = 199 possible largest subset found: Q = 179 largest subset found: q = 179 number of 0's in found largest subset: 0 -->Mean and Dispersion of property NAKH920105 from -11 to -1 Mean: 5.160518 Dispersion: 1.620981 -->Mean and Dispersion of property NAKH920105 from 3 to 8 Mean: 6.754227 Dispersion: 2.293874 -->Mean and Dispersion of property NAKH920105 from 10 to Sequence C-end Mean: 12.352371 Dispersion: 1.574704 -->Mean and Dispersion of property NAKH920105 from 26 to Sequence C-end Mean: 12.438834 Dispersion: 2.486604 -->Mean and Dispersion of property HAGECH94_V from 3 to 8 Mean: 128.081006 Dispersion: 17.788892 -->Mean and Dispersion of property at position(s) -1 0 1 2 number of selected entries: 179 Mean : 387.924581 Dispersion: 42.590177 -->Mean and Dispersion of property at position(s) -1 1 2 number of selected entries: 179 Mean : 295.101117 Dispersion: 35.890074 -->Mean and Dispersion of property at position(s) -1 1 number of selected entries: 179 Mean : 204.563128 Dispersion: 34.443513 -->Mean and Dispersion of property at position(s) -1 2 number of selected entries: 179 Mean : 203.845251 Dispersion: 33.012402 -->All flags were switched on. -->Switch_Off_Tax: number of entries before procedure : 388 -->Flags of all entries except Viridiplantae switched off -->Switch_Off_Tax: number of entries after procedure : 219 -->Switch_Off_Len: number of entries before procedure : 219 -->Flags of all entries with AALen-GPIPos > 32 switched off -->Flags of all entries with AALen-GPIPos < 17 switched off -->Switch_Off_Len: number of entries after procedure : 219 NSubFam = 88 Profile: Ala 0.4 0.1 0.3 -0.1 0.6 0.4 0.4 0.2 0.7 0.7 0.7 0.5 0.1 0.1 0.2 0.3 1.6 1.7 0.4 0.4 0.3 0.6 0.7 0.8 0.0 0.8 0.5 0.2 1.1 0.8 1.0 1.0 0.9 0.9 0.8 0.8 0.8 0.5 0.8 0.3 0.3 Cys 0.3 0.5 0.4 0.0 -0.2 0.3 -0.7 -1.3 -3.1 -0.6 -1.3 -0.6 -2.5 -1.3 -4.6 -6.1 -5.5 -1.3 -1.3 0.3 -0.9 0.0 -0.2 -0.6 0.1 -0.2 -0.6 -0.2 -1.3 -0.2 0.5 -0.2 -1.3 -0.2 0.6 -1.3 0.1 -0.5 -1.1 -0.3 -0.7 Asp 0.7 0.3 0.1 0.1 -0.2 0.1 -0.1 0.2 0.3 0.3 -0.4 -0.8 0.2 -0.4 -0.8 0.1 -0.5 -1.6 -1.0 -2.4 -1.3 -1.3 -4.5 -1.7 -1.7 -4.8 -2.4 -4.9 -4.5 -5.2 -5.0 -2.4 -5.7 -5.4 -5.0 -5.1 -5.1 -4.6 -2.2 -2.0 -4.3 Glu -0.3 -0.2 -0.6 -1.0 -0.2 -0.6 -1.2 -0.7 -1.2 -1.4 -0.0 -0.4 -0.5 -0.9 -0.5 -6.1 -1.8 -5.7 -0.8 -0.8 -1.9 -2.6 -4.5 -1.4 -3.8 -4.8 -4.9 -4.9 -2.5 -5.2 -5.0 -5.3 -5.7 -5.4 -5.0 -5.1 -5.1 -4.6 -3.6 -4.4 -4.3 Phe -0.3 -1.0 -0.5 -1.0 -0.7 -1.0 -0.2 -0.5 -0.7 -0.5 -1.0 -1.4 -1.0 -0.5 -2.1 -6.1 -2.1 -5.7 -0.2 -2.1 0.2 -0.0 0.3 0.7 0.9 0.8 0.6 0.7 0.7 0.6 0.1 0.6 0.7 0.7 0.6 1.4 1.5 1.2 1.1 0.9 1.3 Gly 0.3 0.5 0.6 0.6 0.4 0.4 0.4 0.2 0.2 0.3 -0.2 0.1 0.2 -0.4 0.6 0.9 1.1 1.1 0.4 0.1 0.2 0.5 -0.1 0.5 0.5 0.3 0.5 0.1 -0.3 -0.7 -0.0 -0.2 -0.1 -0.2 -0.6 -0.2 -0.2 -1.9 -0.7 -0.5 -0.7 His -0.1 -0.1 -0.8 -0.4 -2.7 -1.5 -2.7 -0.4 0.1 0.0 -1.5 -1.5 0.3 -0.4 -0.4 -6.1 -5.5 -5.7 0.6 -0.2 -0.4 0.3 -0.1 -0.1 -0.1 -4.8 -1.5 -1.5 -0.8 -5.2 -0.8 -5.3 -5.7 -1.5 -0.8 -1.5 -5.1 -0.3 -1.3 0.8 0.5 Ile -0.8 -0.5 -0.7 -0.9 -1.1 -0.7 -2.5 -0.5 -1.8 -1.1 -1.7 -0.8 -1.1 -0.8 -1.0 -6.1 -5.5 -5.7 -0.8 -0.7 0.0 -0.5 -0.3 -1.1 0.2 -0.8 -0.2 0.2 0.1 0.3 -0.6 -0.2 0.4 -0.1 0.3 -0.0 0.2 -0.3 0.3 0.2 0.2 Lys -0.3 -0.7 -0.5 -0.2 -0.1 -0.8 -0.1 -0.5 -0.8 -0.6 -0.7 -0.3 0.0 0.2 -0.2 -6.1 -5.5 -5.7 -0.5 -0.1 -0.6 -0.1 -0.8 -1.2 -1.1 -1.8 -1.1 -2.5 -4.5 -5.2 -2.5 -5.3 -5.7 -5.4 -5.0 -1.4 -1.8 -2.4 -2.3 -4.4 -1.9 Leu -1.2 -0.9 -0.5 -0.7 -1.2 -1.4 -1.2 -1.2 -1.0 -1.6 -1.0 -0.9 -1.0 -0.5 -4.6 -6.1 -5.5 -5.7 -0.6 0.0 0.2 -0.7 -0.7 -0.5 0.3 0.8 1.0 0.8 1.0 1.2 0.9 1.0 1.1 1.1 0.9 1.1 1.1 1.3 1.3 1.3 0.9 Met -0.6 -0.6 -2.9 -0.3 0.1 -0.1 -1.7 -0.3 -1.0 -0.3 -0.9 -0.6 -0.6 -1.0 -4.6 -6.1 -5.5 -5.7 0.3 0.1 -0.3 0.1 0.1 -1.0 -0.3 -1.0 -0.3 -0.1 -0.0 -0.3 0.4 0.4 0.4 0.7 0.8 0.3 -0.2 -0.2 -0.4 0.1 0.8 Asn -0.8 0.5 -0.3 -0.3 -0.3 -0.4 -0.1 -0.3 -0.2 -1.5 -0.1 -0.0 -0.6 -0.8 0.4 1.2 -1.5 -1.1 -0.1 -0.0 -0.0 0.4 -0.4 0.1 -0.6 -4.8 -4.9 -4.9 -1.5 -2.2 -5.0 -0.8 -5.7 -5.4 -5.0 -5.1 -2.2 -4.6 -1.3 -1.8 -1.6 Pro 1.0 1.1 0.8 1.0 1.1 1.2 1.2 1.4 0.9 1.4 1.4 1.2 1.2 1.3 1.2 -6.1 -1.0 -1.6 0.1 0.0 0.1 -0.6 0.5 -0.1 -0.0 0.2 -0.5 -0.4 -1.2 -2.3 -0.7 -0.3 -5.7 -2.3 -1.2 -5.1 -1.6 -1.1 -1.4 -4.4 -4.3 Gln -0.3 -1.4 -0.3 -0.5 -0.2 0.0 -0.5 -0.2 -0.4 -0.2 0.2 0.4 -1.0 -0.4 -1.4 -6.1 -1.0 -2.1 -1.0 -1.0 -1.4 -1.4 -0.2 -1.0 -0.2 -2.1 -4.9 -4.9 -2.1 -2.1 -1.4 -5.3 -5.7 -5.4 -1.4 -5.1 -5.1 -2.0 -0.8 -1.1 -4.3 Arg -1.4 -0.6 -0.6 -0.9 -0.6 -0.6 -2.5 -1.1 -0.5 -0.9 -0.4 -0.6 -0.7 -0.7 -1.1 -6.1 -5.5 -5.7 0.2 0.4 0.3 0.4 0.0 0.1 -0.2 -2.5 -4.9 -1.8 -2.5 -5.2 -5.0 -5.3 -5.7 -5.4 -2.5 -2.5 -5.1 -1.0 -2.3 -0.1 -1.2 Ser 0.7 0.9 0.7 0.8 0.6 0.4 0.9 0.7 0.6 0.7 0.5 0.9 0.8 0.9 1.2 2.0 1.5 1.2 0.9 1.0 0.6 0.6 0.7 0.8 0.6 0.1 0.5 0.3 0.2 0.4 0.2 -0.6 -0.3 0.1 0.1 -0.0 -0.0 -0.1 0.0 -0.4 0.5 Thr 0.3 -0.3 0.5 0.5 0.2 0.4 0.6 0.0 0.6 0.0 0.5 0.2 0.4 0.7 0.6 -6.1 -1.4 -0.1 0.3 0.4 0.1 -0.0 0.3 -0.1 -0.2 -0.0 -0.2 -0.0 -0.7 -0.5 -0.3 -0.4 -0.4 -0.5 -0.7 -0.6 -1.8 -1.7 -2.3 -0.7 -1.2 Val -1.0 -0.8 -0.5 -0.4 -0.7 -0.6 -0.3 -0.3 -0.0 -0.7 -1.5 -1.2 -0.4 -0.7 -1.0 -6.1 -1.5 -1.2 -0.4 -0.7 0.5 0.1 0.3 -0.1 0.1 0.8 0.6 1.1 0.6 0.9 0.9 0.9 1.0 0.8 0.9 0.4 0.5 0.8 -0.1 -0.1 0.6 Trp -2.2 -1.0 -1.1 -2.3 -0.3 -1.0 -1.0 -1.0 -3.1 -2.2 -1.0 -2.2 0.5 -1.0 -4.6 -6.1 -5.5 -5.7 -0.4 -1.1 -1.0 -0.4 -4.5 0.4 0.4 0.8 -1.0 0.7 -4.5 -5.2 -0.3 -0.4 -5.7 -0.3 -0.3 -0.3 -0.3 -0.2 0.8 0.6 -0.4 Tyr -0.3 -1.2 -1.9 -0.2 -0.5 0.2 -0.8 -0.3 -0.8 -0.3 0.3 -0.3 -0.8 -0.1 -1.2 -6.1 -5.5 -5.7 -0.5 -1.9 -1.2 -1.2 -0.5 -0.3 -0.1 -1.2 -1.2 -0.8 -1.9 -1.9 -1.9 -5.3 -5.7 -1.9 -0.3 -0.3 -1.8 -0.4 -0.6 -0.4 -0.2 ConsensSequence: p s s s a p s p a p p s p p s S a a s s s a a a l l l l l l l l l l l l l l l l l Positions with profile component > 1.0 for all amino acid types Ala 1 2 13 Cys Asp Glu Phe 20 21 22 23 25 Gly 1 2 His Ile Lys Leu 14 16 17 18 20 21 22 23 24 Met Asn 0 Pro -15 -14 -12 -11 -10 -9 -8 -6 -5 -4 -3 -2 -1 Gln Arg Ser -1 0 1 2 4 Thr Val 12 Trp Tyr Parameters for score calculation: --------------------------------- TaxonCode: 10000 Calculation of profile: number of input sequences: 219 number of regions: 5 1: from : -15 to : -12 weight of region : 0.0 2: from : -11 to : -2 weight of region : 0.5 3: from : -1 to : 2 weight of region : 3.0 4: from : 3 to : 9 weight of region : 0.5 5: from : 10 to : 25 weight of region : 1.0 weight of profile : 0.6 omega-site will be searched in interval [12..40] from C-terminal Function 0 = Combi_contents_win_penalty : contents and windows of DE in N-terminal region Parameters: ScFunc[0].from = -11 ScFunc[0].to = -1 ScFunc[0].PropertyName = DE sections ScFunc[0].par1 = -4.00 penalty ScFunc[0].par2 = 50.00 threshold: percentage of DE in N-terminal region ScFunc[0].par4 = 3 winlen ScFunc[0].par5 = 2 par5 DEs are max allowed per window if par2 is exceeded ScFunc[0].wfunc = 1.00 Function 1 = Lower_Average : hydrophilicity of N-terminal region [-11..-1] Parameters: ScFunc[1].from = -11 ScFunc[1].to = -1 ScFunc[1].PropertyName = NAKH920105 hydrophobicity scale ScFunc[1].par1 = 5.16 mean hydrophobicity for N-terminal region was calculated ScFunc[1].par2 = 1.62 dispersion was calculated ScFunc[1].wfunc = 1.00 ScFunc[1].distr_type = F_GAUSS Function 2 = PenaltyForBadProfile : penalty for bad Omega-Site Parameters: ScFunc[2].from = 0 ScFunc[2].to = 2 ScFunc[2].par1 = 0.10 threshold ScFunc[2].par2 = -4.00 penalty ScFunc[2].wfunc = 1.00 Function 3 = Sum : volume function Parameters: ScFunc[3].from = -1 ScFunc[3].to = 2 ScFunc[3].PropertyName = HAGECH94_V mean volume of residues ScFunc[3].par1 = 387.92 mean volume was calculated ScFunc[3].par2 = 42.59 dispersion was calculated ScFunc[3].wfunc = 1.00 ScFunc[3].distr_type = F_GAUSS Function 4 = Sum3 : volume function for three positions Parameters: ScFunc[4].from = -1 Position 1 ScFunc[4].to = 2 Position 2 ScFunc[4].PropertyName = HAGECH94_V mean volume of residues ScFunc[4].par1 = 295.10 mean volume was calculated ScFunc[4].par2 = 35.89 dispersion was calculated ScFunc[4].par4 = 1 Position 3 ScFunc[4].wfunc = 1.00 ScFunc[4].distr_type = F_GAUSS Function 5 = Sum2 : volume function for two positions Parameters: ScFunc[5].from = -1 Position 1 ScFunc[5].to = 1 Position 2 ScFunc[5].PropertyName = HAGECH94_V mean volume of residues ScFunc[5].par1 = 204.56 mean volume was calculated ScFunc[5].par2 = 34.44 dispersion was calculated ScFunc[5].wfunc = 0.50 ScFunc[5].distr_type = F_GAUSS Function 6 = Penalty_Mobility : penalty for more than one residue out of P, T, V, I Parameters: ScFunc[6].from = -1 ScFunc[6].to = 2 ScFunc[6].PropertyName = PTVI residues ScFunc[6].par1 = -4.00 penalty ScFunc[6].wfunc = 1.00 Function 7 = C_Position : penalty, if site is outside of interval[from..to] relative to C-terminal Parameters: ScFunc[7].from = 17 ScFunc[7].to = 32 ScFunc[7].par1 = 0.50 lambda (x < from) ScFunc[7].par2 = 1.00 lambda (x > to) ScFunc[7].wfunc = 4.00 ScFunc[7].distr_type = F_BOLTZMANN Function 8 = Lower_Average : hydrophilicity of spacer region [3..8] Parameters: ScFunc[8].from = 3 (after omega-site) ScFunc[8].to = 8 ScFunc[8].PropertyName = NAKH920105 hydrophobicity scale ScFunc[8].par1 = 6.75 mean hydrophobicity for spacer region was calculated ScFunc[8].par2 = 2.29 dispersion was calculated ScFunc[8].wfunc = 2.00 ScFunc[8].distr_type = F_GAUSS Function 9 = Lower_Average : function for spacer volume (mean for positions 3..8) Parameters: ScFunc[9].from = 3 (after omega-site) ScFunc[9].to = 8 ScFunc[9].PropertyName = HAGECH94_V mean volume of residues ScFunc[9].par1 = 128.08 mean volume for spacer region was calculated ScFunc[9].par2 = 17.79 dispersion was calculated ScFunc[9].wfunc = 1.00 ScFunc[9].distr_type = F_GAUSS Function 10 = Charged_AA_Penalty_Spacer : penalty for charged AA (DEKRH) in spacer (H=2/3) Parameters: ScFunc[10].from = 3 ScFunc[10].to = 11 ScFunc[10].par1 = -4.00 penalty ScFunc[10].par4 = 3 threshold: max number of charged AA in spacer ScFunc[10].wfunc = 1.00 Function 11 = Flexibility_Spacer : contents of PVI in spacer Parameters: ScFunc[11].from = 3 ScFunc[11].to = 8 ScFunc[11].par1 = -4.00 penalty ScFunc[11].par4 = 4 par4 non-flexible residues are max allowed ScFunc[11].wfunc = 1.00 Function 12 = PenaltyForBadProfile : penalty for bad profile in hydrophobic tail Parameters: ScFunc[12].from = 10 ScFunc[12].to = PROFILE_END ScFunc[12].par1 = 0.20 threshold ScFunc[12].par2 = -12.00 penalty ScFunc[12].wfunc = 1.00 Function 13 = Higher_Average: function for hydrophobic region [10..C_end] (for at least the par4=8 last AAs) Parameters: ScFunc[13].from = 10 ScFunc[13].to = SEQUENCE_CEND ScFunc[13].PropertyName = NAKH920105 hydrophobicity scale ScFunc[13].par1 = 12.35 mean hydrophobicity for at least the 8 last AAs was calculated ScFunc[13].par2 = 1.57 dispersion was calculated ScFunc[13].par4 = 8 minimal length of hydrophobic region ScFunc[13].wfunc = 1.00 ScFunc[13].distr_type = F_GAUSS Function 14 = Higher_Average : function for hydrophobic tail [26..C_end](for at least the par4=8 last AAs) Parameters: ScFunc[14].from = 26 (after profile-end) ScFunc[14].to = SEQUENCE_CEND ScFunc[14].PropertyName = NAKH920105 hydrophobicity scale ScFunc[14].par1 = 12.44 mean hydrophobicity for at least the 8 last AAs was calculated ScFunc[14].par2 = 2.49 dispersion was calculated ScFunc[14].par4 = 8 minimal length of tail for calculation of hydrophobicity parameters ScFunc[14].wfunc = 1.00 ScFunc[14].distr_type = F_GAUSS Function 15 = Sliding_Window : penalty for too short even hydrophobic section Parameters: ScFunc[15].from = 9 ScFunc[15].to = SEQUENCE_CEND ScFunc[15].PropertyName = NAKH920105 hydrophobicity scale ScFunc[15].par1 = 9.00 threshold for windows containig Leu (min mean window hydrophobicity) ScFunc[15].par2 = 6.00 threshold for windows without Leu ScFunc[15].par3 = -12.00 penalty ScFunc[15].par4 = 4 winlen ScFunc[15].par5 = 5 min number of windows one after another ScFunc[15].wfunc = 1.00 Function 16 = Post_Sliding_Window_Polar_Penalty : penalty for polar windows in the hydrophobic tail Parameters: ScFunc[16].from = 10 ScFunc[16].to = SEQUENCE_CEND ScFunc[16].PropertyName = NAKH920105 hydrophobicity scale ScFunc[16].par1 = 1.50 minimum of mean hydrophobicity per window ScFunc[16].par2 = -4.00 penalty ScFunc[16].par3 = 0.50 threshold for extreme windows ScFunc[16].par4 = 3 winlen ScFunc[16].wfunc = 1.00 Function 17 = Post_Sliding_Window_SGC_Penalty : penalty for too long SGC - sections (len = par4) in hydrophobic tail Parameters: ScFunc[17].from = 9 ScFunc[17].to = SEQUENCE_CEND ScFunc[17].PropertyName = NAKH920105 hydrophobicity scale ScFunc[17].par1 = -12.00 penalty ScFunc[17].par2 = 8.20 threshold for hydrophobicity of a window with len=(winlen+1) ScFunc[17].par4 = 3 winlen ScFunc[17].par5 = 2 are max allowed per window ScFunc[17].wfunc = 1.00 Function 18 = LVI_contents : contents of Leu, Val, Ile in the hydrophobic tail Parameters: ScFunc[18].from = 10 ScFunc[18].to = SEQUENCE_CEND ScFunc[18].par1 = 15.00 threshold ScFunc[18].par2 = -12.00 penalty ScFunc[18].wfunc = 1.00 Function 19 = Combi_FWHY_contents_2win : penalty if more than 40% WHFY and 2 disconnected windows (l=4) with > 2 aromats Parameters: ScFunc[19].from = 9 ScFunc[19].to = SEQUENCE_CEND ScFunc[19].PropertyName = ZVEL_AROMA WHFY sections ScFunc[19].par1 = 40.00 threshold: percentage of aromats in tail ScFunc[19].par2 = -12.00 penalty ScFunc[19].par4 = 4 winlen ScFunc[19].par5 = 2 aromats are max allowed per window if par1 is exceeded ScFunc[19].wfunc = 1.00 Function 20 = Sliding_Window : penalty for small (according to volume) windows in tail Parameters: ScFunc[20].from = 9 ScFunc[20].to = SEQUENCE_CEND ScFunc[20].PropertyName = HAGECH94_V volume scale ScFunc[20].par1 = 110.00 threshold (min mean window volume) ScFunc[20].par2 = -12.00 penalty ScFunc[20].par4 = 4 winlen ScFunc[20].par5 = 5 min number of windows one after another ScFunc[20].wfunc = 1.00 Function 21 = Sum2 : volume function for two positions Parameters: ScFunc[21].from = -1 Position 1 ScFunc[21].to = 2 Position 2 ScFunc[21].PropertyName = HAGECH94_V mean volume of residues ScFunc[21].par1 = 203.85 mean volume was calculated ScFunc[21].par2 = 33.01 dispersion was calculated ScFunc[21].wfunc = 0.50 ScFunc[21].distr_type = F_GAUSS
Last modified: 28th October 2002