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# # ------------------------------------------------------------------- # # # package *-> main.Linux_i686 <-* # ******************************* # # copyright by Birgit Eisenhaber, January 2003 # E-mail Birgit.Eisenhaber@imp.univie.ac.at # WWW http://mendel.imp.univie.ac.at # Post IMP, Dr. Bohr-Gasse 7, A-1030 Vienna, Austria # Tel. +43-1-79730557, FAX +43-1-7987153 # All rights reserved. # # name of executable : main.Linux_i686 # time of program compilation : Jan 27 2003 (13:53:59) # time of program execution : Mon Jan 27 13:54:13 2003 # version of the code : Revision: 3.1 (Date: 2001/04/05 15:38:48) # ReadAapLib: AAProperty libraryopened Number of entries in AapLib: <682> -->ReadGPILib: GPI library opened number of entries of file 1 : 219 number of accepted entries of file 1 : 219 total number of entries : 219 -->GPIStatistic_Length: GPILibNumber = 1 Lmin : 17 ( entry: O82318, file: 1 ) Lmax : 32 ( entry: T06041, file: 1 ) deltaL : 5 number of intervals : 3 interval of length from to number of entries 1 17 22 40 2 23 27 134 3 28 32 45 total number of entries : 219 -->Statistic_taxonomy of GPILib 1 / total number of entries 219 219 ..Viridiplantae possible largest subset found: Q = 215 possible largest subset found: Q = 199 possible largest subset found: Q = 179 largest subset found: q = 179 number of 0's in found largest subset: 0 -->GPIPOS -15 total seq. 179 counted seq 179 (100%) 21 A 4 C 15 D 9 E 5 F 21 G 3 H 4 I 9 K 6 L 3 M 4 N 22 P 7 Q 3 R 24 S 11 T 3 V 0 W 5 Y SelectAapCorrelation: <10 best or r > 0.70> ROSG850101:-0.80|Mean area buried on transfer (Rose et al., 1985) BIGC670101:-0.80|Residue volume (Bigelow, 1967) GOLD730102:-0.80|Residue volume (Goldsack-Chalifoux, 1973) GRAR740103:-0.79|Volume (Grantham, 1974) PRAM820102: 0.78|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) CHAM820101:-0.77|Polarizability parameter (Charton-Charton, 1982) MCMT640101:-0.77|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) HAGECH94_V:-0.76|mean volume of residues RADA880106:-0.76|Accessible surface area (Radzicka-Wolfenden, 1988) ZVEL_TINY_: 0.75|AA Property : tiny SelectAapCorrelation: <10 best or r > 0.70 families excluded> ROSG850101:-0.80|Mean area buried on transfer (Rose et al., 1985) PRAM820102: 0.78|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) ZVEL_TINY_: 0.75|AA Property : tiny HUTJ700102:-0.75|Absolute entropy (Hutchens, 1970) PRAM900104: 0.71|Relative frequency in reverse-turn (Prabhakaran, 1990) -->GPIPOS -14 total seq. 179 counted seq 179 (100%) 16 A 6 C 11 D 8 E 3 F 22 G 3 H 7 I 6 K 8 L 3 M 11 N 27 P 0 Q 7 R 25 S 7 T 6 V 1 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> WIM_HYD_R2: 0.83|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 GRAR740103:-0.78|Volume (Grantham, 1974) RADA880106:-0.78|Accessible surface area (Radzicka-Wolfenden, 1988) CHAM820101:-0.77|Polarizability parameter (Charton-Charton, 1982) FAUJ880103:-0.77|Normalized van der Waals volume (Fauchere et al., 1988) RADA880103: 0.75|Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988) GEIM800111: 0.75|Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980) TWO_AA_P_S: 0.75|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) GOLD730102:-0.75|Residue volume (Goldsack-Chalifoux, 1973) BIGC670101:-0.75|Residue volume (Bigelow, 1967) SelectAapCorrelation: <10 best or r > 0.70 families excluded> WIM_HYD_R2: 0.83|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 GRAR740103:-0.78|Volume (Grantham, 1974) GEIM800111: 0.75|Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980) TWO_AA_P_S: 0.75|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) LEVM760104: 0.71|Side chain torsion angle phi(AAAR) (Levitt, 1976) MUNV940104: 0.71|Free energy in beta-strand region (Munoz and Serrano et al., 1994) -->GPIPOS -13 total seq. 179 counted seq 179 (100%) 19 A 3 C 10 D 8 E 5 F 22 G 2 H 5 I 7 K 12 L 0 M 7 N 21 P 4 Q 7 R 23 S 16 T 6 V 1 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> PRAM820102: 0.81|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) DAYM780101: 0.79|Amino acid composition (Dayhoff et al., 1978a) RADA880103: 0.77|Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988) FASG760101:-0.77|Molecular weight (Fasman, 1976) GRAR740103:-0.77|Volume (Grantham, 1974) CHOC750101:-0.77|Average volume of buried residue (Chothia, 1975) BIGC670101:-0.76|Residue volume (Bigelow, 1967) CHOC760101:-0.76|Residue accessible surface area in tripeptide (Chothia, 1976) RADA880106:-0.76|Accessible surface area (Radzicka-Wolfenden, 1988) SelectAapCorrelation: <10 best or r > 0.70 families excluded> PRAM820102: 0.81|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) DAYM780101: 0.79|Amino acid composition (Dayhoff et al., 1978a) RADA880106:-0.76|Accessible surface area (Radzicka-Wolfenden, 1988) HUTJ700102:-0.76|Absolute entropy (Hutchens, 1970) HUTJ700101:-0.75|Heat capacity (Hutchens, 1970) OOBM770105: 0.73|Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977) ZVEL_TINY_: 0.72|AA Property : tiny CHAM830108:-0.71|A parameter of charge transfer donor capability (Charton-Charton, 1983) -->GPIPOS -12 total seq. 179 counted seq 179 (100%) 12 A 4 C 9 D 4 E 3 F 22 G 2 H 4 I 8 K 9 L 4 M 7 N 26 P 4 Q 5 R 28 S 15 T 7 V 0 W 6 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_P_S: 0.78|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) GRAR740103:-0.74|Volume (Grantham, 1974) PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990) LEVM780103: 0.73|Normalized frequency of reverse turn, with weights (Levitt, 1978) TANS770104: 0.73|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) RADA880106:-0.72|Accessible surface area (Radzicka-Wolfenden, 1988) ISOY800104: 0.72|Normalized relative frequency of bend R (Isogai et al., 1980) CHAM820101:-0.72|Polarizability parameter (Charton-Charton, 1982) CHOC760101:-0.71|Residue accessible surface area in tripeptide (Chothia, 1976) ROSG850101:-0.71|Mean area buried on transfer (Rose et al., 1985) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_P_S: 0.78|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) GRAR740103:-0.74|Volume (Grantham, 1974) PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990) TANS770104: 0.73|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) -->GPIPOS -11 total seq. 179 counted seq 179 (100%) 24 A 3 C 9 D 9 E 4 F 18 G 0 H 4 I 10 K 6 L 2 M 7 N 25 P 6 Q 6 R 23 S 12 T 6 V 2 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> ROSG850101:-0.77|Mean area buried on transfer (Rose et al., 1985) TANS770104: 0.74|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) GRAR740103:-0.74|Volume (Grantham, 1974) MCMT640101:-0.74|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) ISOY800104: 0.74|Normalized relative frequency of bend R (Isogai et al., 1980) CHAM820101:-0.73|Polarizability parameter (Charton-Charton, 1982) RADA880103: 0.73|Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988) FAUJ880103:-0.72|Normalized van der Waals volume (Fauchere et al., 1988) HUTJ700102:-0.72|Absolute entropy (Hutchens, 1970) ZVEL_TINY_: 0.72|AA Property : tiny SelectAapCorrelation: <10 best or r > 0.70 families excluded> ROSG850101:-0.77|Mean area buried on transfer (Rose et al., 1985) TANS770104: 0.74|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) HUTJ700102:-0.72|Absolute entropy (Hutchens, 1970) ZVEL_TINY_: 0.72|AA Property : tiny NAKH920102: 0.72|AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992) PRAM820102: 0.71|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) -->GPIPOS -10 total seq. 179 counted seq 179 (100%) 21 A 3 C 11 D 7 E 3 F 18 G 1 H 4 I 6 K 5 L 2 M 6 N 27 P 6 Q 7 R 20 S 16 T 7 V 1 W 8 Y SelectAapCorrelation: <10 best or r > 0.70> TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) ISOY800104: 0.80|Normalized relative frequency of bend R (Isogai et al., 1980) GRAR740103:-0.75|Volume (Grantham, 1974) CHOP780213: 0.74|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970) ROSG850101:-0.74|Mean area buried on transfer (Rose et al., 1985) CHAM820101:-0.74|Polarizability parameter (Charton-Charton, 1982) PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990) PRAM820102: 0.73|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) MCMT640101:-0.73|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) GRAR740103:-0.75|Volume (Grantham, 1974) HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970) PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990) PRAM820102: 0.73|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) ROBB760104:-0.71|Information measure for C-terminal helix (Robson-Suzuki, 1976) QIAN880136: 0.71|Weights for coil at the window position of 3 (Qian-Sejnowski, 1988) HUTJ700101:-0.70|Heat capacity (Hutchens, 1970) -->GPIPOS -9 total seq. 179 counted seq 179 (100%) 20 A 2 C 9 D 3 E 7 F 19 G 0 H 1 I 9 K 5 L 1 M 7 N 26 P 5 Q 1 R 31 S 20 T 9 V 1 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970) TWO_AA_P_S: 0.73|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) GRAR740103:-0.72|Volume (Grantham, 1974) MCMT640101:-0.72|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) ROSG850101:-0.71|Mean area buried on transfer (Rose et al., 1985) CHOC760101:-0.70|Residue accessible surface area in tripeptide (Chothia, 1976) SelectAapCorrelation: <10 best or r > 0.70 families excluded> HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970) TWO_AA_P_S: 0.73|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) GRAR740103:-0.72|Volume (Grantham, 1974) -->GPIPOS -8 total seq. 179 counted seq 179 (100%) 19 A 1 C 11 D 5 E 3 F 13 G 3 H 6 I 6 K 5 L 4 M 7 N 34 P 6 Q 4 R 26 S 10 T 10 V 1 W 5 Y SelectAapCorrelation: <10 best or r > 0.70> TANS770104: 0.86|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_P_S: 0.85|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) CHOP780213: 0.81|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) ISOY800104: 0.80|Normalized relative frequency of bend R (Isogai et al., 1980) ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976) MUNV940104: 0.73|Free energy in beta-strand region (Munoz and Serrano et al., 1994) PTIO830101:-0.73|Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983) QIAN880134: 0.71|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988) QIAN880109:-0.71|Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988) TWO_AA_A_P: 0.71|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TANS770104: 0.86|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_P_S: 0.85|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976) TWO_AA_A_P: 0.71|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) QIAN880136: 0.71|Weights for coil at the window position of 3 (Qian-Sejnowski, 1988) CHAM820101:-0.71|Polarizability parameter (Charton-Charton, 1982) -->GPIPOS -7 total seq. 179 counted seq 179 (100%) 29 A 0 C 11 D 4 E 4 F 15 G 5 H 2 I 5 K 7 L 2 M 7 N 22 P 6 Q 7 R 21 S 17 T 12 V 0 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) PRAM820102: 0.74|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) GRAR740103:-0.72|Volume (Grantham, 1974) LEVM760105:-0.72|Radius of gyration of side chain (Levitt, 1976) HUTJ700102:-0.72|Absolute entropy (Hutchens, 1970) FASG760101:-0.71|Molecular weight (Fasman, 1976) CHOC750101:-0.71|Average volume of buried residue (Chothia, 1975) BIGC670101:-0.71|Residue volume (Bigelow, 1967) GOLD730102:-0.71|Residue volume (Goldsack-Chalifoux, 1973) DAYM780101: 0.71|Amino acid composition (Dayhoff et al., 1978a) SelectAapCorrelation: <10 best or r > 0.70 families excluded> MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) PRAM820102: 0.74|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) LEVM760105:-0.72|Radius of gyration of side chain (Levitt, 1976) DAYM780101: 0.71|Amino acid composition (Dayhoff et al., 1978a) TWO_AA_A_P: 0.70|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) -->GPIPOS -6 total seq. 179 counted seq 179 (100%) 27 A 2 C 12 D 3 E 5 F 17 G 5 H 2 I 6 K 4 L 2 M 2 N 36 P 7 Q 3 R 24 S 10 T 7 V 0 W 5 Y SelectAapCorrelation: <10 best or r > 0.70> TANS770104: 0.83|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_A_P: 0.79|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) ISOY800104: 0.77|Normalized relative frequency of bend R (Isogai et al., 1980) CHOP780213: 0.76|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) TWO_AA_P_S: 0.74|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) MUNV940104: 0.74|Free energy in beta-strand region (Munoz and Serrano et al., 1994) RADA880106:-0.71|Accessible surface area (Radzicka-Wolfenden, 1988) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TANS770104: 0.83|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_A_P: 0.79|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) TWO_AA_P_S: 0.74|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) RADA880106:-0.71|Accessible surface area (Radzicka-Wolfenden, 1988) -->GPIPOS -5 total seq. 179 counted seq 179 (100%) 21 A 1 C 6 D 10 E 3 F 12 G 1 H 2 I 5 K 7 L 2 M 6 N 38 P 9 Q 7 R 24 S 16 T 3 V 1 W 5 Y SelectAapCorrelation: <10 best or r > 0.70> TANS770104: 0.90|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) ISOY800104: 0.87|Normalized relative frequency of bend R (Isogai et al., 1980) CHOP780213: 0.83|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) TWO_AA_P_S: 0.80|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) MUNV940104: 0.77|Free energy in beta-strand region (Munoz and Serrano et al., 1994) QIAN880134: 0.75|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988) TWO_AA_A_P: 0.75|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976) ONE_AA__P_: 0.73|single AA frequency -> P (Eisenhaber & Eisenhaber, 1997) QIAN880135: 0.72|Weights for coil at the window position of 2 (Qian-Sejnowski, 1988) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TANS770104: 0.90|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_P_S: 0.80|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) TWO_AA_A_P: 0.75|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997) ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976) ONE_AA__P_: 0.73|single AA frequency -> P (Eisenhaber & Eisenhaber, 1997) QIAN880135: 0.72|Weights for coil at the window position of 2 (Qian-Sejnowski, 1988) -->GPIPOS -4 total seq. 179 counted seq 179 (100%) 22 A 1 C 4 D 8 E 1 F 14 G 1 H 4 I 9 K 8 L 2 M 8 N 24 P 12 Q 7 R 32 S 13 T 4 V 0 W 5 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_P_S: 0.76|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) TWO_AA_A_S: 0.72|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) TANS770104: 0.72|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_P_S: 0.76|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) TWO_AA_A_S: 0.72|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) TANS770104: 0.72|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) -->GPIPOS -3 total seq. 179 counted seq 179 (100%) 18 A 0 C 11 D 5 E 2 F 13 G 5 H 4 I 9 K 7 L 3 M 5 N 31 P 3 Q 6 R 26 S 16 T 9 V 4 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> TANS770104: 0.82|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_P_S: 0.81|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) ISOY800104: 0.79|Normalized relative frequency of bend R (Isogai et al., 1980) CHOP780213: 0.78|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) PTIO830101:-0.72|Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TANS770104: 0.82|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TWO_AA_P_S: 0.81|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) PTIO830101:-0.72|Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983) -->GPIPOS -2 total seq. 179 counted seq 179 (100%) 12 A 1 C 6 D 4 E 5 F 9 G 3 H 4 I 12 K 9 L 2 M 4 N 32 P 6 Q 6 R 32 S 21 T 4 V 1 W 6 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_P_S: 0.86|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) CHOP780213: 0.78|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) ISOY800104: 0.78|Normalized relative frequency of bend R (Isogai et al., 1980) MAXF760106: 0.70|Normalized frequency of alpha region (Maxfield-Scheraga, 1976) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_P_S: 0.86|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) MAXF760106: 0.70|Normalized frequency of alpha region (Maxfield-Scheraga, 1976) -->GPIPOS -1 total seq. 179 counted seq 179 (100%) 17 A 0 C 4 D 7 E 1 F 20 G 3 H 4 I 8 K 0 L 0 M 12 N 23 P 2 Q 4 R 47 S 21 T 4 V 0 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> ONE_AA__S_: 0.76|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997) TWO_AA_P_S: 0.76|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997) TWO_AA_S_T: 0.73|two AA frequency -> ST (Eisenhaber & Eisenhaber, 1997) TWO_AA_G_S: 0.72|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.70|AA Property : tiny QIAN880116: 0.70|Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988) SelectAapCorrelation: <10 best or r > 0.70 families excluded> ONE_AA__S_: 0.76|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.70|AA Property : tiny QIAN880116: 0.70|Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988) -->GPIPOS 0 total seq. 179 counted seq 179 (100%) 20 A 0 C 9 D 0 E 0 F 33 G 0 H 0 I 0 K 0 L 0 M 19 N 0 P 0 Q 0 R 98 S 0 T 0 V 0 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> ONE_AA__S_: 0.92|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA0: 0.85|Udenfriend : (omega + 0)- site TWO_AA_G_S: 0.85|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.78|AA Property : tiny TWO_AA_A_S: 0.75|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) TWO_AA_N_S: 0.74|two AA frequency -> NS (Eisenhaber & Eisenhaber, 1997) SelectAapCorrelation: <10 best or r > 0.70 families excluded> ONE_AA__S_: 0.92|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA0: 0.85|Udenfriend : (omega + 0)- site ZVEL_TINY_: 0.78|AA Property : tiny -->GPIPOS 1 total seq. 179 counted seq 179 (100%) 66 A 0 C 5 D 2 E 1 F 36 G 0 H 0 I 0 K 0 L 0 M 2 N 3 P 3 Q 0 R 55 S 3 T 3 V 0 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> ZVEL_TINY_: 0.96|AA Property : tiny TWO_AA_A_S: 0.91|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) WIM_HYD_R2: 0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 UDF_OMEGA2: 0.88|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site TWO_AA_A_G: 0.74|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997) GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A) SelectAapCorrelation: <10 best or r > 0.70 families excluded> ZVEL_TINY_: 0.96|AA Property : tiny TWO_AA_A_S: 0.91|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) WIM_HYD_R2: 0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 UDF_OMEGA2: 0.88|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site TWO_AA_A_G: 0.74|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997) GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A) -->GPIPOS 2 total seq. 179 counted seq 179 (100%) 78 A 1 C 2 D 0 E 0 F 32 G 0 H 0 I 0 K 0 L 0 M 2 N 2 P 1 Q 0 R 48 S 10 T 3 V 0 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> ZVEL_TINY_: 0.92|AA Property : tiny UDF_OMEGA2: 0.91|Udenfriend : (omega + 2)- site TWO_AA_A_S: 0.90|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site ONE_AA__A_: 0.80|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997) TWO_AA_A_G: 0.77|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997) GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A) SelectAapCorrelation: <10 best or r > 0.70 families excluded> ZVEL_TINY_: 0.92|AA Property : tiny UDF_OMEGA2: 0.91|Udenfriend : (omega + 2)- site TWO_AA_A_S: 0.90|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site ONE_AA__A_: 0.80|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997) GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A) -->GPIPOS 3 total seq. 179 counted seq 179 (100%) 24 A 1 C 4 D 4 E 4 F 22 G 7 H 4 I 8 K 10 L 4 M 6 N 10 P 3 Q 13 R 27 S 17 T 7 V 1 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> ZVEL_TINY_: 0.85|AA Property : tiny UDF_OMEGA2: 0.75|Udenfriend : (omega + 2)- site JUNJ780101: 0.74|Sequence frequency (Jungck, 1978) DAYM780101: 0.73|Amino acid composition (Dayhoff et al., 1978a) TWO_AA_A_S: 0.73|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) CHOC750101:-0.72|Average volume of buried residue (Chothia, 1975) PRAM820102: 0.72|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) MCMT640101:-0.72|Refractivity (McMeekin et al., 1964), Cited by Jones (1975) GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A) WIM_HYD_R2:-0.71|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 SelectAapCorrelation: <10 best or r > 0.70 families excluded> ZVEL_TINY_: 0.85|AA Property : tiny UDF_OMEGA2: 0.75|Udenfriend : (omega + 2)- site JUNJ780101: 0.74|Sequence frequency (Jungck, 1978) TWO_AA_A_S: 0.73|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) CHOC750101:-0.72|Average volume of buried residue (Chothia, 1975) PRAM820102: 0.72|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A) -->GPIPOS 4 total seq. 179 counted seq 179 (100%) 21 A 5 C 1 D 5 E 1 F 13 G 4 H 5 I 11 K 16 L 5 M 6 N 9 P 3 Q 16 R 34 S 16 T 7 V 1 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_A_S: 0.75|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.70|AA Property : tiny ONE_AA__S_: 0.70|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_A_S: 0.75|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.70|AA Property : tiny ONE_AA__S_: 0.70|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997) -->GPIPOS 5 total seq. 179 counted seq 179 (100%) 22 A 2 C 2 D 2 E 9 F 16 G 3 H 11 I 7 K 16 L 4 M 5 N 11 P 2 Q 14 R 22 S 10 T 18 V 1 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900109: 0.80|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900101: 0.78|AA composition of total proteins (Nakashima et al., 1990) JUNJ780101: 0.77|Sequence frequency (Jungck, 1978) JOND920101: 0.77|Relative frequency of occurrence (Jones et al., 1992) DAYM780101: 0.75|Amino acid composition (Dayhoff et al., 1978a) JUKT750101: 0.75|Amino acid distribution (Jukes et al., 1975) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900109: 0.80|AA composition of membrane proteins (Nakashima et al., 1990) JUNJ780101: 0.77|Sequence frequency (Jungck, 1978) -->GPIPOS 6 total seq. 179 counted seq 179 (100%) 24 A 4 C 3 D 1 E 7 F 22 G 5 H 5 I 8 K 10 L 5 M 13 N 5 P 1 Q 15 R 21 S 12 T 15 V 2 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> UDF_OMEGA2: 0.84|Udenfriend : (omega + 2)- site ZVEL_TINY_: 0.79|AA Property : tiny UDF_OMEGA1: 0.79|Udenfriend : (omega + 1)- site JUNJ780101: 0.75|Sequence frequency (Jungck, 1978) GRO_HYD_Ri: 0.75|preference of AAResidues in interior part (ASA < 5 A*A) JUKT750101: 0.71|Amino acid distribution (Jukes et al., 1975) DAYM780101: 0.71|Amino acid composition (Dayhoff et al., 1978a) CHOC750101:-0.70|Average volume of buried residue (Chothia, 1975) SelectAapCorrelation: <10 best or r > 0.70 families excluded> UDF_OMEGA2: 0.84|Udenfriend : (omega + 2)- site ZVEL_TINY_: 0.79|AA Property : tiny UDF_OMEGA1: 0.79|Udenfriend : (omega + 1)- site JUNJ780101: 0.75|Sequence frequency (Jungck, 1978) GRO_HYD_Ri: 0.75|preference of AAResidues in interior part (ASA < 5 A*A) CHOC750101:-0.70|Average volume of buried residue (Chothia, 1975) -->GPIPOS 7 total seq. 179 counted seq 179 (100%) 29 A 3 C 0 D 0 E 10 F 11 G 3 H 9 I 4 K 9 L 6 M 4 N 13 P 6 Q 13 R 26 S 12 T 17 V 0 W 4 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_A_S: 0.80|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.71|AA Property : tiny SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_A_S: 0.80|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) ZVEL_TINY_: 0.71|AA Property : tiny -->GPIPOS 8 total seq. 179 counted seq 179 (100%) 32 A 2 C 2 D 2 E 13 F 19 G 4 H 3 I 4 K 12 L 2 M 6 N 7 P 3 Q 11 R 30 S 8 T 11 V 4 W 4 Y SelectAapCorrelation: <10 best or r > 0.70> ZVEL_TINY_: 0.88|AA Property : tiny TWO_AA_A_S: 0.85|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.83|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A) SelectAapCorrelation: <10 best or r > 0.70 families excluded> ZVEL_TINY_: 0.88|AA Property : tiny TWO_AA_A_S: 0.85|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.83|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A) -->GPIPOS 9 total seq. 179 counted seq 179 (100%) 14 A 4 C 2 D 0 E 14 F 20 G 4 H 13 I 4 K 22 L 4 M 4 N 9 P 5 Q 9 R 20 S 8 T 13 V 4 W 6 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900109: 0.84|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900111: 0.82|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920108: 0.76|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920105: 0.76|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900107: 0.74|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990) GRO_HYD_Ro: 0.70|preference of AAResidues in surface parts (ASA > 5 A*A) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900109: 0.84|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990) -->GPIPOS 10 total seq. 179 counted seq 179 (100%) 32 A 2 C 0 D 0 E 12 F 17 G 0 H 3 I 2 K 42 L 1 M 0 N 11 P 1 Q 1 R 12 S 11 T 25 V 6 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900111: 0.85|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_A_L: 0.81|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) GRO_HYD_Ro: 0.77|preference of AAResidues in surface parts (ASA > 5 A*A) NAKH920108: 0.77|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA2: 0.74|Udenfriend : (omega + 2)- site NAKH900105: 0.72|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.81|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.74|Udenfriend : (omega + 2)- site NAKH900105: 0.72|AA composition of mt-proteins from animal (Nakashima et al., 1990) TWO_AA_L_V: 0.71|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) -->GPIPOS 11 total seq. 179 counted seq 179 (100%) 26 A 2 C 1 D 0 E 10 F 18 G 1 H 9 I 4 K 46 L 3 M 0 N 5 P 0 Q 0 R 22 S 8 T 21 V 1 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900109: 0.89|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.81|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH920108: 0.81|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_A_L: 0.77|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site JOND920101: 0.76|Relative frequency of occurrence (Jones et al., 1992) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900109: 0.89|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.77|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.73|Udenfriend : (omega + 1)- site ONE_AA__L_: 0.73|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) RADA880105: 0.70|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988) -->GPIPOS 12 total seq. 179 counted seq 179 (100%) 15 A 3 C 0 D 0 E 15 F 14 G 1 H 12 I 1 K 44 L 5 M 0 N 4 P 0 Q 2 R 16 S 7 T 32 V 5 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900111: 0.92|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.92|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920108: 0.89|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_L_V: 0.86|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.82|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900109: 0.82|AA composition of membrane proteins (Nakashima et al., 1990) WIM_HYD_R2:-0.80|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH900103: 0.79|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990) ZVEL_ALI_1: 0.76|AA Property : aliphatic SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900111: 0.92|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_L_V: 0.86|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) WIM_HYD_R2:-0.80|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 ZVEL_ALI_1: 0.76|AA Property : aliphatic NAKH900107: 0.74|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) ONE_AA__L_: 0.71|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) -->GPIPOS 13 total seq. 179 counted seq 179 (100%) 38 A 1 C 0 D 1 E 14 F 11 G 2 H 11 I 0 K 51 L 4 M 1 N 3 P 1 Q 0 R 15 S 4 T 21 V 0 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_A_L: 0.88|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990) NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920108: 0.83|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site UDF_OMEGA2: 0.80|Udenfriend : (omega + 2)- site NAKH900112: 0.80|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_A_L: 0.88|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site UDF_OMEGA2: 0.80|Udenfriend : (omega + 2)- site ONE_AA__L_: 0.72|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) GRO_HYD_Ro: 0.70|preference of AAResidues in surface parts (ASA > 5 A*A) NAKH900107: 0.70|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) -->GPIPOS 14 total seq. 179 counted seq 179 (100%) 33 A 2 C 0 D 0 E 10 F 6 G 0 H 11 I 0 K 55 L 4 M 1 N 1 P 1 Q 0 R 18 S 6 T 30 V 0 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH920105: 0.88|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900111: 0.87|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920108: 0.84|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900109: 0.83|AA composition of membrane proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990) TWO_AA_L_V: 0.79|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH920105: 0.88|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) TWO_AA_L_V: 0.79|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) ONE_AA__L_: 0.74|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) -->GPIPOS 15 total seq. 179 counted seq 179 (100%) 41 A 4 C 0 D 0 E 8 F 11 G 1 H 4 I 1 K 44 L 7 M 0 N 5 P 1 Q 0 R 17 S 7 T 25 V 2 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_A_L: 0.87|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900109: 0.83|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900111: 0.81|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.78|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA1: 0.78|Udenfriend : (omega + 1)- site UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site WIM_HYD_R2:-0.76|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH920108: 0.75|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900112: 0.70|Transmembrane regions of mt-proteins (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_A_L: 0.87|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900109: 0.83|AA composition of membrane proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.78|Udenfriend : (omega + 1)- site UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site WIM_HYD_R2:-0.76|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH900112: 0.70|Transmembrane regions of mt-proteins (Nakashima et al., 1990) -->GPIPOS 16 total seq. 179 counted seq 179 (100%) 37 A 3 C 1 D 0 E 15 F 9 G 0 H 7 I 0 K 46 L 7 M 3 N 6 P 0 Q 0 R 6 S 4 T 33 V 2 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900111: 0.86|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.85|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920108: 0.82|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900109: 0.82|AA composition of membrane proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) TWO_AA_L_V: 0.77|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) ZVEL_ALI_2: 0.74|AA Property : aliphatic (changed set of AA) NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.72|Udenfriend : (omega + 1)- site ZVEL_HYDP3: 0.70|AA Property : hydrophobic (changed set of AA) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900111: 0.86|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) TWO_AA_L_V: 0.77|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) ZVEL_ALI_2: 0.74|AA Property : aliphatic (changed set of AA) UDF_OMEGA1: 0.72|Udenfriend : (omega + 1)- site ZVEL_HYDP3: 0.70|AA Property : hydrophobic (changed set of AA) -->GPIPOS 17 total seq. 179 counted seq 179 (100%) 31 A 1 C 0 D 0 E 14 F 13 G 0 H 10 I 0 K 53 L 8 M 0 N 0 P 0 Q 0 R 11 S 7 T 31 V 0 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.90|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920108: 0.87|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900112: 0.82|Transmembrane regions of mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) TWO_AA_L_V: 0.80|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) TWO_AA_L_V: 0.80|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) ONE_AA__L_: 0.73|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) RADA880105: 0.71|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988) NAKH900107: 0.71|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) -->GPIPOS 18 total seq. 179 counted seq 177 (98%) 37 A 3 C 0 D 0 E 11 F 10 G 0 H 9 I 0 K 48 L 8 M 0 N 1 P 0 Q 0 R 15 S 7 T 26 V 1 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900109: 0.85|AA composition of membrane proteins (Nakashima et al., 1990) NAKH920108: 0.83|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site NAKH900112: 0.79|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.76|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990) UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site TWO_AA_L_V: 0.72|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) RADA880105: 0.70|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988) -->GPIPOS 19 total seq. 179 counted seq 177 (98%) 28 A 7 C 0 D 0 E 13 F 6 G 2 H 15 I 0 K 43 L 10 M 0 N 2 P 2 Q 1 R 14 S 4 T 26 V 2 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH920105: 0.90|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900111: 0.90|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920108: 0.89|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900109: 0.80|AA composition of membrane proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.79|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site KYTJ820101: 0.77|Hydropathy index (Kyte-Doolittle, 1982) NAKH900105: 0.77|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900103: 0.77|AA composition of mt-proteins (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH920105: 0.90|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_A_L: 0.79|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site TWO_AA_L_V: 0.76|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) ARGP820102: 0.73|Signal sequence helical potential (Argos et al., 1982) ZVEL_ALI_2: 0.71|AA Property : aliphatic (changed set of AA) RADA880105: 0.71|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988) -->GPIPOS 20 total seq. 179 counted seq 175 (97%) 27 A 1 C 0 D 0 E 24 F 9 G 1 H 9 I 2 K 55 L 7 M 0 N 0 P 0 Q 1 R 10 S 5 T 17 V 2 W 5 Y SelectAapCorrelation: <10 best or r > 0.70> WIM_HYD_R2:-0.90|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH900112: 0.85|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH920105: 0.85|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920108: 0.85|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site NAKH900109: 0.81|AA composition of membrane proteins (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> WIM_HYD_R2:-0.90|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site ONE_AA__L_: 0.81|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site NAKH900107: 0.73|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) ARGP820103: 0.72|Membrane-buried preference parameters (Argos et al., 1982) -->GPIPOS 21 total seq. 179 counted seq 170 (94%) 29 A 4 C 0 D 0 E 25 F 10 G 0 H 14 I 2 K 46 L 3 M 1 N 1 P 0 Q 0 R 12 S 2 T 18 V 2 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920108: 0.89|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920105: 0.87|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900109: 0.84|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900112: 0.82|Transmembrane regions of mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site NAKH900103: 0.79|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site TWO_AA_L_F: 0.74|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) NAKH900107: 0.73|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) ONE_AA__L_: 0.71|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) -->GPIPOS 22 total seq. 179 counted seq 162 (90%) 23 A 2 C 0 D 0 E 22 F 2 G 1 H 7 I 1 K 54 L 3 M 0 N 2 P 1 Q 4 R 11 S 2 T 23 V 2 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH900111: 0.85|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH920105: 0.84|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA1: 0.84|Udenfriend : (omega + 1)- site NAKH920108: 0.83|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) ONE_AA__L_: 0.81|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.78|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) TWO_AA_L_V: 0.78|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900103: 0.77|AA composition of mt-proteins (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH900111: 0.85|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.84|Udenfriend : (omega + 1)- site ONE_AA__L_: 0.81|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) -->GPIPOS 23 total seq. 179 counted seq 147 (82%) 24 A 1 C 1 D 0 E 17 F 3 G 1 H 11 I 1 K 52 L 2 M 2 N 2 P 3 Q 1 R 8 S 1 T 9 V 5 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> ONE_AA__L_: 0.86|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900111: 0.81|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH900103: 0.81|AA composition of mt-proteins (Nakashima et al., 1990) NAKH920108: 0.80|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site SelectAapCorrelation: <10 best or r > 0.70 families excluded> ONE_AA__L_: 0.86|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990) UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site NAKH900109: 0.75|AA composition of membrane proteins (Nakashima et al., 1990) -->GPIPOS 24 total seq. 179 counted seq 122 (68%) 12 A 2 C 1 D 0 E 8 F 5 G 7 H 9 I 0 K 45 L 3 M 0 N 0 P 2 Q 6 R 6 S 4 T 6 V 4 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> ONE_AA__L_: 0.94|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990) NAKH920105: 0.79|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_A_L: 0.79|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) NAKH900111: 0.75|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_I_L: 0.73|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site SelectAapCorrelation: <10 best or r > 0.70 families excluded> ONE_AA__L_: 0.94|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site YUTK870102: 0.71|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987) -->GPIPOS 25 total seq. 179 counted seq 95 (53%) 8 A 1 C 0 D 0 E 15 F 4 G 3 H 7 I 1 K 22 L 6 M 1 N 0 P 0 Q 2 R 9 S 1 T 11 V 1 W 3 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH920108: 0.88|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900111: 0.87|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990) WIM_HYD_R2:-0.82|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_L_F: 0.80|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900107: 0.75|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) ARGP820103: 0.74|Membrane-buried preference parameters (Argos et al., 1982) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH920108: 0.88|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_L_F: 0.80|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) ARGP820103: 0.74|Membrane-buried preference parameters (Argos et al., 1982) YUTK870102: 0.71|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987) -->GPIPOS 26 total seq. 179 counted seq 72 (40%) 7 A 2 C 1 D 0 E 5 F 1 G 0 H 6 I 0 K 25 L 1 M 0 N 0 P 3 Q 2 R 8 S 0 T 10 V 0 W 1 Y SelectAapCorrelation: <10 best or r > 0.70> NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) ONE_AA__L_: 0.85|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH920108: 0.81|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900111: 0.81|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_L_V: 0.81|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.80|Udenfriend : (omega + 1)- site NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990) YUTK870102: 0.76|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987) SelectAapCorrelation: <10 best or r > 0.70 families excluded> NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) ONE_AA__L_: 0.85|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.80|Udenfriend : (omega + 1)- site YUTK870102: 0.76|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987) -->GPIPOS 27 total seq. 179 counted seq 53 (29%) 6 A 1 C 0 D 0 E 9 F 1 G 2 H 6 I 1 K 14 L 1 M 0 N 1 P 0 Q 1 R 4 S 1 T 3 V 0 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> WIM_HYD_R2:-0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH920108: 0.86|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH900112: 0.85|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900111: 0.84|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) TWO_AA_L_F: 0.84|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH920105: 0.81|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site NAKH900107: 0.76|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> WIM_HYD_R2:-0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2 NAKH920108: 0.86|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) TWO_AA_L_F: 0.84|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site ONE_AA__L_: 0.74|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997) YUTK870102: 0.70|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987) ARGP820102: 0.70|Signal sequence helical potential (Argos et al., 1982) -->GPIPOS 28 total seq. 179 counted seq 37 (20%) 0 A 2 C 1 D 0 E 8 F 1 G 1 H 3 I 0 K 9 L 1 M 2 N 0 P 1 Q 1 R 3 S 1 T 1 V 0 W 2 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_L_F: 0.93|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_L_F: 0.93|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997) NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990) -->GPIPOS 29 total seq. 179 counted seq 21 (11%) 3 A 0 C 0 D 0 E 0 F 1 G 0 H 1 I 0 K 5 L 1 M 0 N 0 P 1 Q 1 R 4 S 1 T 2 V 1 W 0 Y SelectAapCorrelation: <10 best or r > 0.70> TWO_AA_L_S: 0.82|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997) NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900109: 0.72|AA composition of membrane proteins (Nakashima et al., 1990) NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990) NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.70|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997) SelectAapCorrelation: <10 best or r > 0.70 families excluded> TWO_AA_L_S: 0.82|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997) NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900109: 0.72|AA composition of membrane proteins (Nakashima et al., 1990) TWO_AA_A_L: 0.70|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
Last modified: 7th February 2003