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Comparison with amino acid property scales

Contact:
Birgit Eisenhaber (IMP/Austria)
Michael Wildpaner (IMP/Austria)
Frank Eisenhaber (IMP/Austria)
Carolyn Schultz (University of Adelaide/Australia)
Paul Dupree and Georg Borner (University of Cambridge/UK)

# 
# ------------------------------------------------------------------- #
# 
# package *-> main.Linux_i686 <-*
# *******************************
# 
# copyright by Birgit Eisenhaber, January 2003
#              E-mail Birgit.Eisenhaber@imp.univie.ac.at
#              WWW    http://mendel.imp.univie.ac.at
#              Post   IMP, Dr. Bohr-Gasse 7, A-1030 Vienna, Austria
#              Tel.   +43-1-79730557, FAX +43-1-7987153
# All rights reserved.
# 
# name of executable           : main.Linux_i686
# time of program compilation  : Jan 27 2003 (13:53:59)
# time of program execution    : Mon Jan 27 13:54:13 2003
# version of the code          : Revision: 3.1 (Date: 2001/04/05 15:38:48)
#
ReadAapLib: AAProperty library  opened
Number of entries in AapLib: <682>
-->ReadGPILib: GPI library  opened
number of entries of file 1                   :   219
number of accepted entries of file 1          :   219
total number of entries                       :   219

-->GPIStatistic_Length: GPILibNumber = 1
Lmin                :  17 ( entry: O82318, file: 1 )
Lmax                :  32 ( entry: T06041, file: 1 )
deltaL              :   5
number of intervals :   3
interval of length   from     to    number of entries
                 1     17     22                   40
                 2     23     27                  134
                 3     28     32                   45
total number of entries                       :   219

-->Statistic_taxonomy of GPILib 1 / total number of entries 219
   219 ..Viridiplantae

possible largest subset found: Q =  215
possible largest subset found: Q =  199
possible largest subset found: Q =  179
largest subset found: q = 179
number of 0's in found largest subset: 0
-->GPIPOS -15   total seq. 179  counted seq 179 (100%)
   21 A     4 C    15 D     9 E     5 F    21 G     3 H     4 I     9 K     6 L
    3 M     4 N    22 P     7 Q     3 R    24 S    11 T     3 V     0 W     5 Y

SelectAapCorrelation: <10 best or r >  0.70>
ROSG850101:-0.80|Mean area buried on transfer (Rose et al., 1985)
BIGC670101:-0.80|Residue volume (Bigelow, 1967)
GOLD730102:-0.80|Residue volume (Goldsack-Chalifoux, 1973)
GRAR740103:-0.79|Volume (Grantham, 1974)
PRAM820102: 0.78|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
CHAM820101:-0.77|Polarizability parameter (Charton-Charton, 1982)
MCMT640101:-0.77|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
HAGECH94_V:-0.76|mean volume of residues
RADA880106:-0.76|Accessible surface area (Radzicka-Wolfenden, 1988)
ZVEL_TINY_: 0.75|AA Property : tiny
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ROSG850101:-0.80|Mean area buried on transfer (Rose et al., 1985)
PRAM820102: 0.78|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
ZVEL_TINY_: 0.75|AA Property : tiny
HUTJ700102:-0.75|Absolute entropy (Hutchens, 1970)
PRAM900104: 0.71|Relative frequency in reverse-turn (Prabhakaran, 1990)

-->GPIPOS -14   total seq. 179  counted seq 179 (100%)
   16 A     6 C    11 D     8 E     3 F    22 G     3 H     7 I     6 K     8 L
    3 M    11 N    27 P     0 Q     7 R    25 S     7 T     6 V     1 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
WIM_HYD_R2: 0.83|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
GRAR740103:-0.78|Volume (Grantham, 1974)
RADA880106:-0.78|Accessible surface area (Radzicka-Wolfenden, 1988)
CHAM820101:-0.77|Polarizability parameter (Charton-Charton, 1982)
FAUJ880103:-0.77|Normalized van der Waals volume (Fauchere et al., 1988)
RADA880103: 0.75|Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)
GEIM800111: 0.75|Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)
TWO_AA_P_S: 0.75|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
GOLD730102:-0.75|Residue volume (Goldsack-Chalifoux, 1973)
BIGC670101:-0.75|Residue volume (Bigelow, 1967)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
WIM_HYD_R2: 0.83|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
GRAR740103:-0.78|Volume (Grantham, 1974)
GEIM800111: 0.75|Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)
TWO_AA_P_S: 0.75|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
LEVM760104: 0.71|Side chain torsion angle phi(AAAR) (Levitt, 1976)
MUNV940104: 0.71|Free energy in beta-strand region (Munoz and Serrano et al., 1994)

-->GPIPOS -13   total seq. 179  counted seq 179 (100%)
   19 A     3 C    10 D     8 E     5 F    22 G     2 H     5 I     7 K    12 L
    0 M     7 N    21 P     4 Q     7 R    23 S    16 T     6 V     1 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
PRAM820102: 0.81|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
DAYM780101: 0.79|Amino acid composition (Dayhoff et al., 1978a)
RADA880103: 0.77|Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)
FASG760101:-0.77|Molecular weight (Fasman, 1976)
GRAR740103:-0.77|Volume (Grantham, 1974)
CHOC750101:-0.77|Average volume of buried residue (Chothia, 1975)
BIGC670101:-0.76|Residue volume (Bigelow, 1967)
CHOC760101:-0.76|Residue accessible surface area in tripeptide (Chothia, 1976)
RADA880106:-0.76|Accessible surface area (Radzicka-Wolfenden, 1988)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
PRAM820102: 0.81|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
DAYM780101: 0.79|Amino acid composition (Dayhoff et al., 1978a)
RADA880106:-0.76|Accessible surface area (Radzicka-Wolfenden, 1988)
HUTJ700102:-0.76|Absolute entropy (Hutchens, 1970)
HUTJ700101:-0.75|Heat capacity (Hutchens, 1970)
OOBM770105: 0.73|Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)
ZVEL_TINY_: 0.72|AA Property : tiny
CHAM830108:-0.71|A parameter of charge transfer donor capability (Charton-Charton, 1983)

-->GPIPOS -12   total seq. 179  counted seq 179 (100%)
   12 A     4 C     9 D     4 E     3 F    22 G     2 H     4 I     8 K     9 L
    4 M     7 N    26 P     4 Q     5 R    28 S    15 T     7 V     0 W     6 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_P_S: 0.78|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
GRAR740103:-0.74|Volume (Grantham, 1974)
PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990)
LEVM780103: 0.73|Normalized frequency of reverse turn, with weights (Levitt, 1978)
TANS770104: 0.73|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
RADA880106:-0.72|Accessible surface area (Radzicka-Wolfenden, 1988)
ISOY800104: 0.72|Normalized relative frequency of bend R (Isogai et al., 1980)
CHAM820101:-0.72|Polarizability parameter (Charton-Charton, 1982)
CHOC760101:-0.71|Residue accessible surface area in tripeptide (Chothia, 1976)
ROSG850101:-0.71|Mean area buried on transfer (Rose et al., 1985)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_P_S: 0.78|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
GRAR740103:-0.74|Volume (Grantham, 1974)
PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990)
TANS770104: 0.73|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)

-->GPIPOS -11   total seq. 179  counted seq 179 (100%)
   24 A     3 C     9 D     9 E     4 F    18 G     0 H     4 I    10 K     6 L
    2 M     7 N    25 P     6 Q     6 R    23 S    12 T     6 V     2 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
ROSG850101:-0.77|Mean area buried on transfer (Rose et al., 1985)
TANS770104: 0.74|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
GRAR740103:-0.74|Volume (Grantham, 1974)
MCMT640101:-0.74|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
ISOY800104: 0.74|Normalized relative frequency of bend R (Isogai et al., 1980)
CHAM820101:-0.73|Polarizability parameter (Charton-Charton, 1982)
RADA880103: 0.73|Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)
FAUJ880103:-0.72|Normalized van der Waals volume (Fauchere et al., 1988)
HUTJ700102:-0.72|Absolute entropy (Hutchens, 1970)
ZVEL_TINY_: 0.72|AA Property : tiny
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ROSG850101:-0.77|Mean area buried on transfer (Rose et al., 1985)
TANS770104: 0.74|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
HUTJ700102:-0.72|Absolute entropy (Hutchens, 1970)
ZVEL_TINY_: 0.72|AA Property : tiny
NAKH920102: 0.72|AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992)
PRAM820102: 0.71|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)

-->GPIPOS -10   total seq. 179  counted seq 179 (100%)
   21 A     3 C    11 D     7 E     3 F    18 G     1 H     4 I     6 K     5 L
    2 M     6 N    27 P     6 Q     7 R    20 S    16 T     7 V     1 W     8 Y

SelectAapCorrelation: <10 best or r >  0.70>
TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
ISOY800104: 0.80|Normalized relative frequency of bend R (Isogai et al., 1980)
GRAR740103:-0.75|Volume (Grantham, 1974)
CHOP780213: 0.74|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970)
ROSG850101:-0.74|Mean area buried on transfer (Rose et al., 1985)
CHAM820101:-0.74|Polarizability parameter (Charton-Charton, 1982)
PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990)
PRAM820102: 0.73|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
MCMT640101:-0.73|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
GRAR740103:-0.75|Volume (Grantham, 1974)
HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970)
PRAM900104: 0.73|Relative frequency in reverse-turn (Prabhakaran, 1990)
PRAM820102: 0.73|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
ROBB760104:-0.71|Information measure for C-terminal helix (Robson-Suzuki, 1976)
QIAN880136: 0.71|Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)
HUTJ700101:-0.70|Heat capacity (Hutchens, 1970)

-->GPIPOS  -9   total seq. 179  counted seq 179 (100%)
   20 A     2 C     9 D     3 E     7 F    19 G     0 H     1 I     9 K     5 L
    1 M     7 N    26 P     5 Q     1 R    31 S    20 T     9 V     1 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970)
TWO_AA_P_S: 0.73|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
GRAR740103:-0.72|Volume (Grantham, 1974)
MCMT640101:-0.72|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
ROSG850101:-0.71|Mean area buried on transfer (Rose et al., 1985)
CHOC760101:-0.70|Residue accessible surface area in tripeptide (Chothia, 1976)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
HUTJ700102:-0.74|Absolute entropy (Hutchens, 1970)
TWO_AA_P_S: 0.73|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
GRAR740103:-0.72|Volume (Grantham, 1974)

-->GPIPOS  -8   total seq. 179  counted seq 179 (100%)
   19 A     1 C    11 D     5 E     3 F    13 G     3 H     6 I     6 K     5 L
    4 M     7 N    34 P     6 Q     4 R    26 S    10 T    10 V     1 W     5 Y

SelectAapCorrelation: <10 best or r >  0.70>
TANS770104: 0.86|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_P_S: 0.85|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
CHOP780213: 0.81|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
ISOY800104: 0.80|Normalized relative frequency of bend R (Isogai et al., 1980)
ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976)
MUNV940104: 0.73|Free energy in beta-strand region (Munoz and Serrano et al., 1994)
PTIO830101:-0.73|Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)
QIAN880134: 0.71|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
QIAN880109:-0.71|Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988)
TWO_AA_A_P: 0.71|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TANS770104: 0.86|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_P_S: 0.85|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976)
TWO_AA_A_P: 0.71|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
QIAN880136: 0.71|Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)
CHAM820101:-0.71|Polarizability parameter (Charton-Charton, 1982)

-->GPIPOS  -7   total seq. 179  counted seq 179 (100%)
   29 A     0 C    11 D     4 E     4 F    15 G     5 H     2 I     5 K     7 L
    2 M     7 N    22 P     6 Q     7 R    21 S    17 T    12 V     0 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
PRAM820102: 0.74|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
GRAR740103:-0.72|Volume (Grantham, 1974)
LEVM760105:-0.72|Radius of gyration of side chain (Levitt, 1976)
HUTJ700102:-0.72|Absolute entropy (Hutchens, 1970)
FASG760101:-0.71|Molecular weight (Fasman, 1976)
CHOC750101:-0.71|Average volume of buried residue (Chothia, 1975)
BIGC670101:-0.71|Residue volume (Bigelow, 1967)
GOLD730102:-0.71|Residue volume (Goldsack-Chalifoux, 1973)
DAYM780101: 0.71|Amino acid composition (Dayhoff et al., 1978a)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
MCMT640101:-0.79|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
PRAM820102: 0.74|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
LEVM760105:-0.72|Radius of gyration of side chain (Levitt, 1976)
DAYM780101: 0.71|Amino acid composition (Dayhoff et al., 1978a)
TWO_AA_A_P: 0.70|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS  -6   total seq. 179  counted seq 179 (100%)
   27 A     2 C    12 D     3 E     5 F    17 G     5 H     2 I     6 K     4 L
    2 M     2 N    36 P     7 Q     3 R    24 S    10 T     7 V     0 W     5 Y

SelectAapCorrelation: <10 best or r >  0.70>
TANS770104: 0.83|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_A_P: 0.79|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
ISOY800104: 0.77|Normalized relative frequency of bend R (Isogai et al., 1980)
CHOP780213: 0.76|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
TWO_AA_P_S: 0.74|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
MUNV940104: 0.74|Free energy in beta-strand region (Munoz and Serrano et al., 1994)
RADA880106:-0.71|Accessible surface area (Radzicka-Wolfenden, 1988)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TANS770104: 0.83|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_A_P: 0.79|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_S: 0.74|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
RADA880106:-0.71|Accessible surface area (Radzicka-Wolfenden, 1988)

-->GPIPOS  -5   total seq. 179  counted seq 179 (100%)
   21 A     1 C     6 D    10 E     3 F    12 G     1 H     2 I     5 K     7 L
    2 M     6 N    38 P     9 Q     7 R    24 S    16 T     3 V     1 W     5 Y

SelectAapCorrelation: <10 best or r >  0.70>
TANS770104: 0.90|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
ISOY800104: 0.87|Normalized relative frequency of bend R (Isogai et al., 1980)
CHOP780213: 0.83|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
TWO_AA_P_S: 0.80|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
MUNV940104: 0.77|Free energy in beta-strand region (Munoz and Serrano et al., 1994)
QIAN880134: 0.75|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
TWO_AA_A_P: 0.75|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976)
ONE_AA__P_: 0.73|single AA frequency -> P (Eisenhaber & Eisenhaber, 1997)
QIAN880135: 0.72|Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TANS770104: 0.90|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_P_S: 0.80|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_P: 0.75|two AA frequency -> AP (Eisenhaber & Eisenhaber, 1997)
ROBB760104:-0.74|Information measure for C-terminal helix (Robson-Suzuki, 1976)
ONE_AA__P_: 0.73|single AA frequency -> P (Eisenhaber & Eisenhaber, 1997)
QIAN880135: 0.72|Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)

-->GPIPOS  -4   total seq. 179  counted seq 179 (100%)
   22 A     1 C     4 D     8 E     1 F    14 G     1 H     4 I     9 K     8 L
    2 M     8 N    24 P    12 Q     7 R    32 S    13 T     4 V     0 W     5 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_P_S: 0.76|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.72|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TANS770104: 0.72|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_P_S: 0.76|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.72|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TANS770104: 0.72|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)

-->GPIPOS  -3   total seq. 179  counted seq 179 (100%)
   18 A     0 C    11 D     5 E     2 F    13 G     5 H     4 I     9 K     7 L
    3 M     5 N    31 P     3 Q     6 R    26 S    16 T     9 V     4 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
TANS770104: 0.82|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_P_S: 0.81|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
ISOY800104: 0.79|Normalized relative frequency of bend R (Isogai et al., 1980)
CHOP780213: 0.78|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
PTIO830101:-0.72|Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TANS770104: 0.82|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
TWO_AA_P_S: 0.81|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
PTIO830101:-0.72|Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)

-->GPIPOS  -2   total seq. 179  counted seq 179 (100%)
   12 A     1 C     6 D     4 E     5 F     9 G     3 H     4 I    12 K     9 L
    2 M     4 N    32 P     6 Q     6 R    32 S    21 T     4 V     1 W     6 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_P_S: 0.86|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
CHOP780213: 0.78|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
ISOY800104: 0.78|Normalized relative frequency of bend R (Isogai et al., 1980)
MAXF760106: 0.70|Normalized frequency of alpha region (Maxfield-Scheraga, 1976)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_P_S: 0.86|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TANS770104: 0.80|Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)
MAXF760106: 0.70|Normalized frequency of alpha region (Maxfield-Scheraga, 1976)

-->GPIPOS  -1   total seq. 179  counted seq 179 (100%)
   17 A     0 C     4 D     7 E     1 F    20 G     3 H     4 I     8 K     0 L
    0 M    12 N    23 P     2 Q     4 R    47 S    21 T     4 V     0 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
ONE_AA__S_: 0.76|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_S: 0.76|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_S_T: 0.73|two AA frequency -> ST (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_S: 0.72|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.70|AA Property : tiny
QIAN880116: 0.70|Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ONE_AA__S_: 0.76|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.70|AA Property : tiny
QIAN880116: 0.70|Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)

-->GPIPOS   0   total seq. 179  counted seq 179 (100%)
   20 A     0 C     9 D     0 E     0 F    33 G     0 H     0 I     0 K     0 L
    0 M    19 N     0 P     0 Q     0 R    98 S     0 T     0 V     0 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
ONE_AA__S_: 0.92|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA0: 0.85|Udenfriend : (omega + 0)- site
TWO_AA_G_S: 0.85|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.78|AA Property : tiny
TWO_AA_A_S: 0.75|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_N_S: 0.74|two AA frequency -> NS (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ONE_AA__S_: 0.92|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA0: 0.85|Udenfriend : (omega + 0)- site
ZVEL_TINY_: 0.78|AA Property : tiny

-->GPIPOS   1   total seq. 179  counted seq 179 (100%)
   66 A     0 C     5 D     2 E     1 F    36 G     0 H     0 I     0 K     0 L
    0 M     2 N     3 P     3 Q     0 R    55 S     3 T     3 V     0 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
ZVEL_TINY_: 0.96|AA Property : tiny
TWO_AA_A_S: 0.91|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
WIM_HYD_R2: 0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
UDF_OMEGA2: 0.88|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
TWO_AA_A_G: 0.74|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997)
GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ZVEL_TINY_: 0.96|AA Property : tiny
TWO_AA_A_S: 0.91|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
WIM_HYD_R2: 0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
UDF_OMEGA2: 0.88|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
TWO_AA_A_G: 0.74|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997)
GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A)

-->GPIPOS   2   total seq. 179  counted seq 179 (100%)
   78 A     1 C     2 D     0 E     0 F    32 G     0 H     0 I     0 K     0 L
    0 M     2 N     2 P     1 Q     0 R    48 S    10 T     3 V     0 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
ZVEL_TINY_: 0.92|AA Property : tiny
UDF_OMEGA2: 0.91|Udenfriend : (omega + 2)- site
TWO_AA_A_S: 0.90|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site
ONE_AA__A_: 0.80|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_G: 0.77|two AA frequency -> AG (Eisenhaber & Eisenhaber, 1997)
GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ZVEL_TINY_: 0.92|AA Property : tiny
UDF_OMEGA2: 0.91|Udenfriend : (omega + 2)- site
TWO_AA_A_S: 0.90|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site
ONE_AA__A_: 0.80|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997)
GRO_HYD_Ri: 0.72|preference of AAResidues in interior part (ASA < 5 A*A)

-->GPIPOS   3   total seq. 179  counted seq 179 (100%)
   24 A     1 C     4 D     4 E     4 F    22 G     7 H     4 I     8 K    10 L
    4 M     6 N    10 P     3 Q    13 R    27 S    17 T     7 V     1 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
ZVEL_TINY_: 0.85|AA Property : tiny
UDF_OMEGA2: 0.75|Udenfriend : (omega + 2)- site
JUNJ780101: 0.74|Sequence frequency (Jungck, 1978)
DAYM780101: 0.73|Amino acid composition (Dayhoff et al., 1978a)
TWO_AA_A_S: 0.73|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
CHOC750101:-0.72|Average volume of buried residue (Chothia, 1975)
PRAM820102: 0.72|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
MCMT640101:-0.72|Refractivity (McMeekin et al., 1964), Cited by Jones (1975)
GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A)
WIM_HYD_R2:-0.71|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ZVEL_TINY_: 0.85|AA Property : tiny
UDF_OMEGA2: 0.75|Udenfriend : (omega + 2)- site
JUNJ780101: 0.74|Sequence frequency (Jungck, 1978)
TWO_AA_A_S: 0.73|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
CHOC750101:-0.72|Average volume of buried residue (Chothia, 1975)
PRAM820102: 0.72|Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)
GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A)

-->GPIPOS   4   total seq. 179  counted seq 179 (100%)
   21 A     5 C     1 D     5 E     1 F    13 G     4 H     5 I    11 K    16 L
    5 M     6 N     9 P     3 Q    16 R    34 S    16 T     7 V     1 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_A_S: 0.75|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.70|AA Property : tiny
ONE_AA__S_: 0.70|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_A_S: 0.75|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.70|AA Property : tiny
ONE_AA__S_: 0.70|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS   5   total seq. 179  counted seq 179 (100%)
   22 A     2 C     2 D     2 E     9 F    16 G     3 H    11 I     7 K    16 L
    4 M     5 N    11 P     2 Q    14 R    22 S    10 T    18 V     1 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900109: 0.80|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900101: 0.78|AA composition of total proteins (Nakashima et al., 1990)
JUNJ780101: 0.77|Sequence frequency (Jungck, 1978)
JOND920101: 0.77|Relative frequency of occurrence (Jones et al., 1992)
DAYM780101: 0.75|Amino acid composition (Dayhoff et al., 1978a)
JUKT750101: 0.75|Amino acid distribution (Jukes et al., 1975)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900109: 0.80|AA composition of membrane proteins (Nakashima et al., 1990)
JUNJ780101: 0.77|Sequence frequency (Jungck, 1978)

-->GPIPOS   6   total seq. 179  counted seq 179 (100%)
   24 A     4 C     3 D     1 E     7 F    22 G     5 H     5 I     8 K    10 L
    5 M    13 N     5 P     1 Q    15 R    21 S    12 T    15 V     2 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
UDF_OMEGA2: 0.84|Udenfriend : (omega + 2)- site
ZVEL_TINY_: 0.79|AA Property : tiny
UDF_OMEGA1: 0.79|Udenfriend : (omega + 1)- site
JUNJ780101: 0.75|Sequence frequency (Jungck, 1978)
GRO_HYD_Ri: 0.75|preference of AAResidues in interior part (ASA < 5 A*A)
JUKT750101: 0.71|Amino acid distribution (Jukes et al., 1975)
DAYM780101: 0.71|Amino acid composition (Dayhoff et al., 1978a)
CHOC750101:-0.70|Average volume of buried residue (Chothia, 1975)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
UDF_OMEGA2: 0.84|Udenfriend : (omega + 2)- site
ZVEL_TINY_: 0.79|AA Property : tiny
UDF_OMEGA1: 0.79|Udenfriend : (omega + 1)- site
JUNJ780101: 0.75|Sequence frequency (Jungck, 1978)
GRO_HYD_Ri: 0.75|preference of AAResidues in interior part (ASA < 5 A*A)
CHOC750101:-0.70|Average volume of buried residue (Chothia, 1975)

-->GPIPOS   7   total seq. 179  counted seq 179 (100%)
   29 A     3 C     0 D     0 E    10 F    11 G     3 H     9 I     4 K     9 L
    6 M     4 N    13 P     6 Q    13 R    26 S    12 T    17 V     0 W     4 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_A_S: 0.80|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.71|AA Property : tiny
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_A_S: 0.80|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
ZVEL_TINY_: 0.71|AA Property : tiny

-->GPIPOS   8   total seq. 179  counted seq 179 (100%)
   32 A     2 C     2 D     2 E    13 F    19 G     4 H     3 I     4 K    12 L
    2 M     6 N     7 P     3 Q    11 R    30 S     8 T    11 V     4 W     4 Y

SelectAapCorrelation: <10 best or r >  0.70>
ZVEL_TINY_: 0.88|AA Property : tiny
TWO_AA_A_S: 0.85|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.83|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ZVEL_TINY_: 0.88|AA Property : tiny
TWO_AA_A_S: 0.85|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.83|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
GRO_HYD_Ri: 0.71|preference of AAResidues in interior part (ASA < 5 A*A)

-->GPIPOS   9   total seq. 179  counted seq 179 (100%)
   14 A     4 C     2 D     0 E    14 F    20 G     4 H    13 I     4 K    22 L
    4 M     4 N     9 P     5 Q     9 R    20 S     8 T    13 V     4 W     6 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900109: 0.84|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900111: 0.82|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.76|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920105: 0.76|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900107: 0.74|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
GRO_HYD_Ro: 0.70|preference of AAResidues in surface parts (ASA > 5 A*A)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900109: 0.84|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990)

-->GPIPOS  10   total seq. 179  counted seq 179 (100%)
   32 A     2 C     0 D     0 E    12 F    17 G     0 H     3 I     2 K    42 L
    1 M     0 N    11 P     1 Q     1 R    12 S    11 T    25 V     6 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900111: 0.85|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_A_L: 0.81|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
GRO_HYD_Ro: 0.77|preference of AAResidues in surface parts (ASA > 5 A*A)
NAKH920108: 0.77|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA2: 0.74|Udenfriend : (omega + 2)- site
NAKH900105: 0.72|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.81|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.74|Udenfriend : (omega + 2)- site
NAKH900105: 0.72|AA composition of mt-proteins from animal (Nakashima et al., 1990)
TWO_AA_L_V: 0.71|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS  11   total seq. 179  counted seq 179 (100%)
   26 A     2 C     1 D     0 E    10 F    18 G     1 H     9 I     4 K    46 L
    3 M     0 N     5 P     0 Q     0 R    22 S     8 T    21 V     1 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900109: 0.89|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.81|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.81|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_A_L: 0.77|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
JOND920101: 0.76|Relative frequency of occurrence (Jones et al., 1992)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900109: 0.89|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.77|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.73|Udenfriend : (omega + 1)- site
ONE_AA__L_: 0.73|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
RADA880105: 0.70|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)

-->GPIPOS  12   total seq. 179  counted seq 179 (100%)
   15 A     3 C     0 D     0 E    15 F    14 G     1 H    12 I     1 K    44 L
    5 M     0 N     4 P     0 Q     2 R    16 S     7 T    32 V     5 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900111: 0.92|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.92|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: 0.89|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_L_V: 0.86|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.82|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900109: 0.82|AA composition of membrane proteins (Nakashima et al., 1990)
WIM_HYD_R2:-0.80|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH900103: 0.79|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990)
ZVEL_ALI_1: 0.76|AA Property : aliphatic
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900111: 0.92|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_L_V: 0.86|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
WIM_HYD_R2:-0.80|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
ZVEL_ALI_1: 0.76|AA Property : aliphatic
NAKH900107: 0.74|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
ONE_AA__L_: 0.71|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS  13   total seq. 179  counted seq 179 (100%)
   38 A     1 C     0 D     1 E    14 F    11 G     2 H    11 I     0 K    51 L
    4 M     1 N     3 P     1 Q     0 R    15 S     4 T    21 V     0 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_A_L: 0.88|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: 0.83|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.80|Udenfriend : (omega + 2)- site
NAKH900112: 0.80|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_A_L: 0.88|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.80|Udenfriend : (omega + 2)- site
ONE_AA__L_: 0.72|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
GRO_HYD_Ro: 0.70|preference of AAResidues in surface parts (ASA > 5 A*A)
NAKH900107: 0.70|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)

-->GPIPOS  14   total seq. 179  counted seq 179 (100%)
   33 A     2 C     0 D     0 E    10 F     6 G     0 H    11 I     0 K    55 L
    4 M     1 N     1 P     1 Q     0 R    18 S     6 T    30 V     0 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH920105: 0.88|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900111: 0.87|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.84|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900109: 0.83|AA composition of membrane proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site
TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
TWO_AA_L_V: 0.79|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH920105: 0.88|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA1: 0.83|Udenfriend : (omega + 1)- site
TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.79|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ONE_AA__L_: 0.74|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS  15   total seq. 179  counted seq 179 (100%)
   41 A     4 C     0 D     0 E     8 F    11 G     1 H     4 I     1 K    44 L
    7 M     0 N     5 P     1 Q     0 R    17 S     7 T    25 V     2 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_A_L: 0.87|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900109: 0.83|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900111: 0.81|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.78|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA1: 0.78|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
WIM_HYD_R2:-0.76|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH920108: 0.75|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900112: 0.70|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_A_L: 0.87|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900109: 0.83|AA composition of membrane proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.78|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
WIM_HYD_R2:-0.76|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH900112: 0.70|Transmembrane regions of mt-proteins (Nakashima et al., 1990)

-->GPIPOS  16   total seq. 179  counted seq 179 (100%)
   37 A     3 C     1 D     0 E    15 F     9 G     0 H     7 I     0 K    46 L
    7 M     3 N     6 P     0 Q     0 R     6 S     4 T    33 V     2 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900111: 0.86|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.85|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: 0.82|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900109: 0.82|AA composition of membrane proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.77|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ZVEL_ALI_2: 0.74|AA Property : aliphatic (changed set of AA)
NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.72|Udenfriend : (omega + 1)- site
ZVEL_HYDP3: 0.70|AA Property : hydrophobic (changed set of AA)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900111: 0.86|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.77|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ZVEL_ALI_2: 0.74|AA Property : aliphatic (changed set of AA)
UDF_OMEGA1: 0.72|Udenfriend : (omega + 1)- site
ZVEL_HYDP3: 0.70|AA Property : hydrophobic (changed set of AA)

-->GPIPOS  17   total seq. 179  counted seq 179 (100%)
   31 A     1 C     0 D     0 E    14 F    13 G     0 H    10 I     0 K    53 L
    8 M     0 N     0 P     0 Q     0 R    11 S     7 T    31 V     0 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.90|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: 0.87|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900109: 0.87|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900112: 0.82|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.80|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
NAKH900103: 0.78|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.80|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ONE_AA__L_: 0.73|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
RADA880105: 0.71|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)
NAKH900107: 0.71|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)

-->GPIPOS  18   total seq. 179  counted seq 177 (98%)
   37 A     3 C     0 D     0 E    11 F    10 G     0 H     9 I     0 K    48 L
    8 M     0 N     1 P     0 Q     0 R    15 S     7 T    26 V     1 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900109: 0.85|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH920108: 0.83|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
NAKH900112: 0.79|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.76|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990)
UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site
TWO_AA_L_V: 0.72|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
RADA880105: 0.70|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)

-->GPIPOS  19   total seq. 179  counted seq 177 (98%)
   28 A     7 C     0 D     0 E    13 F     6 G     2 H    15 I     0 K    43 L
   10 M     0 N     2 P     2 Q     1 R    14 S     4 T    26 V     2 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH920105: 0.90|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900111: 0.90|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.89|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900109: 0.80|AA composition of membrane proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.79|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
KYTJ820101: 0.77|Hydropathy index (Kyte-Doolittle, 1982)
NAKH900105: 0.77|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.77|AA composition of mt-proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH920105: 0.90|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_A_L: 0.79|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
TWO_AA_L_V: 0.76|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ARGP820102: 0.73|Signal sequence helical potential (Argos et al., 1982)
ZVEL_ALI_2: 0.71|AA Property : aliphatic (changed set of AA)
RADA880105: 0.71|Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)

-->GPIPOS  20   total seq. 179  counted seq 175 (97%)
   27 A     1 C     0 D     0 E    24 F     9 G     1 H     9 I     2 K    55 L
    7 M     0 N     0 P     0 Q     1 R    10 S     5 T    17 V     2 W     5 Y

SelectAapCorrelation: <10 best or r >  0.70>
WIM_HYD_R2:-0.90|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900112: 0.85|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.85|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920108: 0.85|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
NAKH900109: 0.81|AA composition of membrane proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
WIM_HYD_R2:-0.90|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH900111: 0.88|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.82|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
ONE_AA__L_: 0.81|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
NAKH900107: 0.73|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
ARGP820103: 0.72|Membrane-buried preference parameters (Argos et al., 1982)

-->GPIPOS  21   total seq. 179  counted seq 170 (94%)
   29 A     4 C     0 D     0 E    25 F    10 G     0 H    14 I     2 K    46 L
    3 M     1 N     1 P     0 Q     0 R    12 S     2 T    18 V     2 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.89|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920105: 0.87|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900109: 0.84|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900112: 0.82|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site
TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
NAKH900103: 0.79|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900111: 0.91|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.82|Udenfriend : (omega + 1)- site
TWO_AA_A_L: 0.80|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
TWO_AA_L_F: 0.74|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900107: 0.73|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
ONE_AA__L_: 0.71|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS  22   total seq. 179  counted seq 162 (90%)
   23 A     2 C     0 D     0 E    22 F     2 G     1 H     7 I     1 K    54 L
    3 M     0 N     2 P     1 Q     4 R    11 S     2 T    23 V     2 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH900111: 0.85|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.84|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA1: 0.84|Udenfriend : (omega + 1)- site
NAKH920108: 0.83|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
ONE_AA__L_: 0.81|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.81|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.78|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.78|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.78|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.77|AA composition of mt-proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH900111: 0.85|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.84|Udenfriend : (omega + 1)- site
ONE_AA__L_: 0.81|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)

-->GPIPOS  23   total seq. 179  counted seq 147 (82%)
   24 A     1 C     1 D     0 E    17 F     3 G     1 H    11 I     1 K    52 L
    2 M     2 N     2 P     3 Q     1 R     8 S     1 T     9 V     5 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
ONE_AA__L_: 0.86|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900111: 0.81|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.81|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.80|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ONE_AA__L_: 0.86|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
NAKH900109: 0.75|AA composition of membrane proteins (Nakashima et al., 1990)

-->GPIPOS  24   total seq. 179  counted seq 122 (68%)
   12 A     2 C     1 D     0 E     8 F     5 G     7 H     9 I     0 K    45 L
    3 M     0 N     0 P     2 Q     6 R     6 S     4 T     6 V     4 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
ONE_AA__L_: 0.94|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH920105: 0.79|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_A_L: 0.79|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.75|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_I_L: 0.73|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
ONE_AA__L_: 0.94|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.84|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.73|Udenfriend : (omega + 2)- site
YUTK870102: 0.71|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)

-->GPIPOS  25   total seq. 179  counted seq 95 (53%)
    8 A     1 C     0 D     0 E    15 F     4 G     3 H     7 I     1 K    22 L
    6 M     1 N     0 P     0 Q     2 R     9 S     1 T    11 V     1 W     3 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH920108: 0.88|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900111: 0.87|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
WIM_HYD_R2:-0.82|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_L_F: 0.80|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900107: 0.75|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
ARGP820103: 0.74|Membrane-buried preference parameters (Argos et al., 1982)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH920108: 0.88|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_L_F: 0.80|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
ARGP820103: 0.74|Membrane-buried preference parameters (Argos et al., 1982)
YUTK870102: 0.71|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)

-->GPIPOS  26   total seq. 179  counted seq 72 (40%)
    7 A     2 C     1 D     0 E     5 F     1 G     0 H     6 I     0 K    25 L
    1 M     0 N     0 P     3 Q     2 R     8 S     0 T    10 V     0 W     1 Y

SelectAapCorrelation: <10 best or r >  0.70>
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
ONE_AA__L_: 0.85|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.83|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.81|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900111: 0.81|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_L_V: 0.81|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.80|Udenfriend : (omega + 1)- site
NAKH900103: 0.80|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.79|AA composition of mt-proteins from animal (Nakashima et al., 1990)
YUTK870102: 0.76|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
NAKH920105: 0.86|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
ONE_AA__L_: 0.85|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.80|Udenfriend : (omega + 1)- site
YUTK870102: 0.76|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)

-->GPIPOS  27   total seq. 179  counted seq 53 (29%)
    6 A     1 C     0 D     0 E     9 F     1 G     2 H     6 I     1 K    14 L
    1 M     0 N     1 P     0 Q     1 R     4 S     1 T     3 V     0 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
WIM_HYD_R2:-0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH920108: 0.86|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900112: 0.85|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900111: 0.84|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_L_F: 0.84|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900103: 0.82|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.82|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH920105: 0.81|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
NAKH900107: 0.76|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
WIM_HYD_R2:-0.89|Hydrophobicity at membrane interfaces: deltaG_residue pH=2
NAKH920108: 0.86|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
TWO_AA_L_F: 0.84|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.81|Udenfriend : (omega + 1)- site
ONE_AA__L_: 0.74|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
YUTK870102: 0.70|Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)
ARGP820102: 0.70|Signal sequence helical potential (Argos et al., 1982)

-->GPIPOS  28   total seq. 179  counted seq 37 (20%)
    0 A     2 C     1 D     0 E     8 F     1 G     1 H     3 I     0 K     9 L
    1 M     2 N     0 P     1 Q     1 R     3 S     1 T     1 V     0 W     2 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_L_F: 0.93|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_L_F: 0.93|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990)

-->GPIPOS  29   total seq. 179  counted seq 21 (11%)
    3 A     0 C     0 D     0 E     0 F     1 G     0 H     1 I     0 K     5 L
    1 M     0 N     0 P     1 Q     1 R     4 S     1 T     2 V     1 W     0 Y

SelectAapCorrelation: <10 best or r >  0.70>
TWO_AA_L_S: 0.82|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900109: 0.72|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900112: 0.71|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.70|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r >  0.70 families excluded>
TWO_AA_L_S: 0.82|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900109: 0.72|AA composition of membrane proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.70|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)



Last modified: 7th February 2003