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#
# ------------------------------------------------------------------- #
#
# package *-> main.Linux_i686 <-*
# *******************************
#
# copyright by Birgit Eisenhaber, September 1997
# E-mail Birgit.Eisenhaber@nt.imp.univie.ac.at
# WWW http://mendel.imp.univie.ac.at
# Post IMP, Dr. Bohr-Gasse 7, A-1030 Vienna, Austria
# Tel. +43-1-79730557, FAX +43-1-7987153
# All rights reserved.
#
# name of executable : main.Linux_i686
# time of program compilation : Feb 6 2003 (13:15:47)
# time of program execution : Thu Feb 6 13:20:13 2003
# version of the code : Revision: 3.1 (Date: 2001/04/05 15:38:48)
#
ReadAapLib: AAProperty library opened
Number of entries in AapLib: <682>
-->All selects were switched on.
Selection parameters:
---------------------
0: PToken: OC
SToken:
RExp: VIRIDIPLANTAE
is_SToken: 0
expect: 1
-->begin GPI-site evaluations
-->ReadGPILib: GPI library opened
number of entries of file 1 : 388
number of accepted entries of file 1 : 388
total number of entries : 388
-->GPIStatistic_Length: GPILibNumber = 1
Lmin : 14 ( entry: PAG1_TRYBB, file: 1 )
Lmax : 32 ( entry: T06041, file: 1 )
deltaL : 5
number of intervals : 4
interval of length from to number of entries
1 14 19 25
2 20 24 183
3 25 29 151
4 30 34 29
total number of entries : 388
-->Statistic_taxonomy of GPILib 1 / total number of entries 388
1 VIRUSES
168 EUKARYOTA
120 ..METAZOA
5 ....INSECTA
113 ....VERTEBRATA
3 ......PISCES
5 ......AVES
105 ......MAMMALIA
55 ........PRIMATES
10 ..FUNGI
38 ..PROTOZOA
219 ..Viridiplantae
-->degree of the polynom for fitting: 6
-->Calc_EVD_Param_PolyFit: file of values opened
SSerr = 12.24452810
The 7 polynomial coefficients (starting from the lowest power on) are:
beta[0] = -7.608233e+00
beta[1] = -3.064603e-01
beta[2] = -6.636068e-03
beta[3] = -9.337898e-05
beta[4] = -7.492552e-07
beta[5] = -3.064883e-09
beta[6] = -4.928117e-12
Thresholds for GPI-anchor selecting:
P-site: score = 2.00 p = 2.616277e-04
S-site: score = -2.00 p = 8.924251e-04
-->All flags were switched on.
-->Switch_Off_Tax: number of entries before procedure : 388
-->Flags of all entries except Viridiplantae switched off
-->Switch_Off_Tax: number of entries after procedure : 219
-->Switch_Off_Len: number of entries before procedure : 219
-->Flags of all entries with AALen-GPIPos > 32 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 219
possible largest subset found: Q = 215
possible largest subset found: Q = 199
possible largest subset found: Q = 179
largest subset found: q = 179
number of 0's in found largest subset: 0
-->Mean and Dispersion of property NAKH920105 from -11 to -1
Mean: 5.160518
Dispersion: 1.620981
-->Mean and Dispersion of property NAKH920105 from 3 to 8
Mean: 6.754227
Dispersion: 2.293874
-->Mean and Dispersion of property NAKH920105 from 10 to Sequence C-end
Mean: 12.352371
Dispersion: 1.574704
-->Mean and Dispersion of property NAKH920105 from 26 to Sequence C-end
Mean: 12.438834
Dispersion: 2.486604
-->Mean and Dispersion of property HAGECH94_V from 3 to 8
Mean: 128.081006
Dispersion: 17.788892
-->Mean and Dispersion of property at position(s) -1 0 1 2
number of selected entries: 179
Mean : 387.924581
Dispersion: 42.590177
-->Mean and Dispersion of property at position(s) -1 1 2
number of selected entries: 179
Mean : 295.101117
Dispersion: 35.890074
-->Mean and Dispersion of property at position(s) -1 1
number of selected entries: 179
Mean : 204.563128
Dispersion: 34.443513
-->Mean and Dispersion of property at position(s) -1 2
number of selected entries: 179
Mean : 203.845251
Dispersion: 33.012402
-->All flags were switched on.
-->Switch_Off_Tax: number of entries before procedure : 388
-->Flags of all entries except Viridiplantae switched off
-->Switch_Off_Tax: number of entries after procedure : 219
-->Switch_Off_Len: number of entries before procedure : 219
-->Flags of all entries with AALen-GPIPos > 32 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 219
NSubFam = 88
Profile:
Ala
0.4 0.1 0.3 -0.1 0.6 0.4 0.4 0.2 0.7 0.7 0.7 0.5 0.1 0.1 0.2
0.3 1.6 1.7 0.4 0.4 0.3 0.6 0.7 0.8 0.0 0.8 0.5 0.2 1.1 0.8
1.0 1.0 0.9 0.9 0.8 0.8 0.8 0.5 0.8 0.3 0.3
Cys
0.3 0.5 0.4 0.0 -0.2 0.3 -0.7 -1.3 -3.1 -0.6 -1.3 -0.6 -2.5 -1.3 -4.6
-6.1 -5.5 -1.3 -1.3 0.3 -0.9 0.0 -0.2 -0.6 0.1 -0.2 -0.6 -0.2 -1.3 -0.2
0.5 -0.2 -1.3 -0.2 0.6 -1.3 0.1 -0.5 -1.1 -0.3 -0.7
Asp
0.7 0.3 0.1 0.1 -0.2 0.1 -0.1 0.2 0.3 0.3 -0.4 -0.8 0.2 -0.4 -0.8
0.1 -0.5 -1.6 -1.0 -2.4 -1.3 -1.3 -4.5 -1.7 -1.7 -4.8 -2.4 -4.9 -4.5 -5.2
-5.0 -2.4 -5.7 -5.4 -5.0 -5.1 -5.1 -4.6 -2.2 -2.0 -4.3
Glu
-0.3 -0.2 -0.6 -1.0 -0.2 -0.6 -1.2 -0.7 -1.2 -1.4 -0.0 -0.4 -0.5 -0.9 -0.5
-6.1 -1.8 -5.7 -0.8 -0.8 -1.9 -2.6 -4.5 -1.4 -3.8 -4.8 -4.9 -4.9 -2.5 -5.2
-5.0 -5.3 -5.7 -5.4 -5.0 -5.1 -5.1 -4.6 -3.6 -4.4 -4.3
Phe
-0.3 -1.0 -0.5 -1.0 -0.7 -1.0 -0.2 -0.5 -0.7 -0.5 -1.0 -1.4 -1.0 -0.5 -2.1
-6.1 -2.1 -5.7 -0.2 -2.1 0.2 -0.0 0.3 0.7 0.9 0.8 0.6 0.7 0.7 0.6
0.1 0.6 0.7 0.7 0.6 1.4 1.5 1.2 1.1 0.9 1.3
Gly
0.3 0.5 0.6 0.6 0.4 0.4 0.4 0.2 0.2 0.3 -0.2 0.1 0.2 -0.4 0.6
0.9 1.1 1.1 0.4 0.1 0.2 0.5 -0.1 0.5 0.5 0.3 0.5 0.1 -0.3 -0.7
-0.0 -0.2 -0.1 -0.2 -0.6 -0.2 -0.2 -1.9 -0.7 -0.5 -0.7
His
-0.1 -0.1 -0.8 -0.4 -2.7 -1.5 -2.7 -0.4 0.1 0.0 -1.5 -1.5 0.3 -0.4 -0.4
-6.1 -5.5 -5.7 0.6 -0.2 -0.4 0.3 -0.1 -0.1 -0.1 -4.8 -1.5 -1.5 -0.8 -5.2
-0.8 -5.3 -5.7 -1.5 -0.8 -1.5 -5.1 -0.3 -1.3 0.8 0.5
Ile
-0.8 -0.5 -0.7 -0.9 -1.1 -0.7 -2.5 -0.5 -1.8 -1.1 -1.7 -0.8 -1.1 -0.8 -1.0
-6.1 -5.5 -5.7 -0.8 -0.7 0.0 -0.5 -0.3 -1.1 0.2 -0.8 -0.2 0.2 0.1 0.3
-0.6 -0.2 0.4 -0.1 0.3 -0.0 0.2 -0.3 0.3 0.2 0.2
Lys
-0.3 -0.7 -0.5 -0.2 -0.1 -0.8 -0.1 -0.5 -0.8 -0.6 -0.7 -0.3 0.0 0.2 -0.2
-6.1 -5.5 -5.7 -0.5 -0.1 -0.6 -0.1 -0.8 -1.2 -1.1 -1.8 -1.1 -2.5 -4.5 -5.2
-2.5 -5.3 -5.7 -5.4 -5.0 -1.4 -1.8 -2.4 -2.3 -4.4 -1.9
Leu
-1.2 -0.9 -0.5 -0.7 -1.2 -1.4 -1.2 -1.2 -1.0 -1.6 -1.0 -0.9 -1.0 -0.5 -4.6
-6.1 -5.5 -5.7 -0.6 0.0 0.2 -0.7 -0.7 -0.5 0.3 0.8 1.0 0.8 1.0 1.2
0.9 1.0 1.1 1.1 0.9 1.1 1.1 1.3 1.3 1.3 0.9
Met
-0.6 -0.6 -2.9 -0.3 0.1 -0.1 -1.7 -0.3 -1.0 -0.3 -0.9 -0.6 -0.6 -1.0 -4.6
-6.1 -5.5 -5.7 0.3 0.1 -0.3 0.1 0.1 -1.0 -0.3 -1.0 -0.3 -0.1 -0.0 -0.3
0.4 0.4 0.4 0.7 0.8 0.3 -0.2 -0.2 -0.4 0.1 0.8
Asn
-0.8 0.5 -0.3 -0.3 -0.3 -0.4 -0.1 -0.3 -0.2 -1.5 -0.1 -0.0 -0.6 -0.8 0.4
1.2 -1.5 -1.1 -0.1 -0.0 -0.0 0.4 -0.4 0.1 -0.6 -4.8 -4.9 -4.9 -1.5 -2.2
-5.0 -0.8 -5.7 -5.4 -5.0 -5.1 -2.2 -4.6 -1.3 -1.8 -1.6
Pro
1.0 1.1 0.8 1.0 1.1 1.2 1.2 1.4 0.9 1.4 1.4 1.2 1.2 1.3 1.2
-6.1 -1.0 -1.6 0.1 0.0 0.1 -0.6 0.5 -0.1 -0.0 0.2 -0.5 -0.4 -1.2 -2.3
-0.7 -0.3 -5.7 -2.3 -1.2 -5.1 -1.6 -1.1 -1.4 -4.4 -4.3
Gln
-0.3 -1.4 -0.3 -0.5 -0.2 0.0 -0.5 -0.2 -0.4 -0.2 0.2 0.4 -1.0 -0.4 -1.4
-6.1 -1.0 -2.1 -1.0 -1.0 -1.4 -1.4 -0.2 -1.0 -0.2 -2.1 -4.9 -4.9 -2.1 -2.1
-1.4 -5.3 -5.7 -5.4 -1.4 -5.1 -5.1 -2.0 -0.8 -1.1 -4.3
Arg
-1.4 -0.6 -0.6 -0.9 -0.6 -0.6 -2.5 -1.1 -0.5 -0.9 -0.4 -0.6 -0.7 -0.7 -1.1
-6.1 -5.5 -5.7 0.2 0.4 0.3 0.4 0.0 0.1 -0.2 -2.5 -4.9 -1.8 -2.5 -5.2
-5.0 -5.3 -5.7 -5.4 -2.5 -2.5 -5.1 -1.0 -2.3 -0.1 -1.2
Ser
0.7 0.9 0.7 0.8 0.6 0.4 0.9 0.7 0.6 0.7 0.5 0.9 0.8 0.9 1.2
2.0 1.5 1.2 0.9 1.0 0.6 0.6 0.7 0.8 0.6 0.1 0.5 0.3 0.2 0.4
0.2 -0.6 -0.3 0.1 0.1 -0.0 -0.0 -0.1 0.0 -0.4 0.5
Thr
0.3 -0.3 0.5 0.5 0.2 0.4 0.6 0.0 0.6 0.0 0.5 0.2 0.4 0.7 0.6
-6.1 -1.4 -0.1 0.3 0.4 0.1 -0.0 0.3 -0.1 -0.2 -0.0 -0.2 -0.0 -0.7 -0.5
-0.3 -0.4 -0.4 -0.5 -0.7 -0.6 -1.8 -1.7 -2.3 -0.7 -1.2
Val
-1.0 -0.8 -0.5 -0.4 -0.7 -0.6 -0.3 -0.3 -0.0 -0.7 -1.5 -1.2 -0.4 -0.7 -1.0
-6.1 -1.5 -1.2 -0.4 -0.7 0.5 0.1 0.3 -0.1 0.1 0.8 0.6 1.1 0.6 0.9
0.9 0.9 1.0 0.8 0.9 0.4 0.5 0.8 -0.1 -0.1 0.6
Trp
-2.2 -1.0 -1.1 -2.3 -0.3 -1.0 -1.0 -1.0 -3.1 -2.2 -1.0 -2.2 0.5 -1.0 -4.6
-6.1 -5.5 -5.7 -0.4 -1.1 -1.0 -0.4 -4.5 0.4 0.4 0.8 -1.0 0.7 -4.5 -5.2
-0.3 -0.4 -5.7 -0.3 -0.3 -0.3 -0.3 -0.2 0.8 0.6 -0.4
Tyr
-0.3 -1.2 -1.9 -0.2 -0.5 0.2 -0.8 -0.3 -0.8 -0.3 0.3 -0.3 -0.8 -0.1 -1.2
-6.1 -5.5 -5.7 -0.5 -1.9 -1.2 -1.2 -0.5 -0.3 -0.1 -1.2 -1.2 -0.8 -1.9 -1.9
-1.9 -5.3 -5.7 -1.9 -0.3 -0.3 -1.8 -0.4 -0.6 -0.4 -0.2
ConsensSequence: p s s s a p s p a p p s p p s S a a s s s a a a l l l l l l l l l l l l l l l l l
Positions with profile component > 1.0 for all amino acid types
Ala 1 2 13
Cys
Asp
Glu
Phe 20 21 22 23 25
Gly 1 2
His
Ile
Lys
Leu 14 16 17 18 20 21 22 23 24
Met
Asn 0
Pro -15 -14 -12 -11 -10 -9 -8 -6 -5 -4 -3 -2 -1
Gln
Arg
Ser -1 0 1 2 4
Thr
Val 12
Trp
Tyr
Parameters for score calculation:
---------------------------------
TaxonCode: 10000
Calculation of profile:
number of input sequences: 219
number of regions: 5
1: from : -15
to : -12
weight of region : 0.0
2: from : -11
to : -2
weight of region : 0.5
3: from : -1
to : 2
weight of region : 3.0
4: from : 3
to : 9
weight of region : 0.5
5: from : 10
to : 25
weight of region : 1.0
weight of profile : 0.6
omega-site will be searched in interval [12..40] from C-terminal
Function 0 = Combi_contents_win_penalty : contents and windows of DE in N-terminal region
Parameters:
ScFunc[0].from = -11
ScFunc[0].to = -1
ScFunc[0].PropertyName = DE sections
ScFunc[0].par1 = -4.00 penalty
ScFunc[0].par2 = 50.00 threshold: percentage of DE in N-terminal region
ScFunc[0].par4 = 3 winlen
ScFunc[0].par5 = 2 par5 DEs are max allowed per window if par2 is exceeded
ScFunc[0].wfunc = 1.00
Function 1 = Lower_Average : hydrophilicity of N-terminal region [-11..-1]
Parameters:
ScFunc[1].from = -11
ScFunc[1].to = -1
ScFunc[1].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[1].par1 = 5.16 mean hydrophobicity for N-terminal region was calculated
ScFunc[1].par2 = 1.62 dispersion was calculated
ScFunc[1].wfunc = 1.00
ScFunc[1].distr_type = F_GAUSS
Function 2 = PenaltyForBadProfile : penalty for bad Omega-Site
Parameters:
ScFunc[2].from = 0
ScFunc[2].to = 2
ScFunc[2].par1 = 0.10 threshold
ScFunc[2].par2 = -4.00 penalty
ScFunc[2].wfunc = 1.00
Function 3 = Sum : volume function
Parameters:
ScFunc[3].from = -1
ScFunc[3].to = 2
ScFunc[3].PropertyName = HAGECH94_V mean volume of residues
ScFunc[3].par1 = 387.92 mean volume was calculated
ScFunc[3].par2 = 42.59 dispersion was calculated
ScFunc[3].wfunc = 1.00
ScFunc[3].distr_type = F_GAUSS
Function 4 = Sum3 : volume function for three positions
Parameters:
ScFunc[4].from = -1 Position 1
ScFunc[4].to = 2 Position 2
ScFunc[4].PropertyName = HAGECH94_V mean volume of residues
ScFunc[4].par1 = 295.10 mean volume was calculated
ScFunc[4].par2 = 35.89 dispersion was calculated
ScFunc[4].par4 = 1 Position 3
ScFunc[4].wfunc = 1.00
ScFunc[4].distr_type = F_GAUSS
Function 5 = Sum2 : volume function for two positions
Parameters:
ScFunc[5].from = -1 Position 1
ScFunc[5].to = 1 Position 2
ScFunc[5].PropertyName = HAGECH94_V mean volume of residues
ScFunc[5].par1 = 204.56 mean volume was calculated
ScFunc[5].par2 = 34.44 dispersion was calculated
ScFunc[5].wfunc = 0.50
ScFunc[5].distr_type = F_GAUSS
Function 6 = Penalty_Mobility : penalty for more than one residue out of P, T, V, I
Parameters:
ScFunc[6].from = -1
ScFunc[6].to = 2
ScFunc[6].PropertyName = PTVI residues
ScFunc[6].par1 = -4.00 penalty
ScFunc[6].wfunc = 1.00
Function 7 = C_Position : penalty, if site is outside of interval[from..to] relative to C-terminal
Parameters:
ScFunc[7].from = 17
ScFunc[7].to = 32
ScFunc[7].par1 = 0.50 lambda (x < from)
ScFunc[7].par2 = 1.00 lambda (x > to)
ScFunc[7].wfunc = 4.00
ScFunc[7].distr_type = F_BOLTZMANN
Function 8 = Lower_Average : hydrophilicity of spacer region [3..8]
Parameters:
ScFunc[8].from = 3 (after omega-site)
ScFunc[8].to = 8
ScFunc[8].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[8].par1 = 6.75 mean hydrophobicity for spacer region was calculated
ScFunc[8].par2 = 2.29 dispersion was calculated
ScFunc[8].wfunc = 2.00
ScFunc[8].distr_type = F_GAUSS
Function 9 = Lower_Average : function for spacer volume (mean for positions 3..8)
Parameters:
ScFunc[9].from = 3 (after omega-site)
ScFunc[9].to = 8
ScFunc[9].PropertyName = HAGECH94_V mean volume of residues
ScFunc[9].par1 = 128.08 mean volume for spacer region was calculated
ScFunc[9].par2 = 17.79 dispersion was calculated
ScFunc[9].wfunc = 1.00
ScFunc[9].distr_type = F_GAUSS
Function 10 = Charged_AA_Penalty_Spacer : penalty for charged AA (DEKRH) in spacer (H=2/3)
Parameters:
ScFunc[10].from = 3
ScFunc[10].to = 11
ScFunc[10].par1 = -4.00 penalty
ScFunc[10].par4 = 3 threshold: max number of charged AA in spacer
ScFunc[10].wfunc = 1.00
Function 11 = Flexibility_Spacer : contents of PVI in spacer
Parameters:
ScFunc[11].from = 3
ScFunc[11].to = 8
ScFunc[11].par1 = -4.00 penalty
ScFunc[11].par4 = 4 par4 non-flexible residues are max allowed
ScFunc[11].wfunc = 1.00
Function 12 = PenaltyForBadProfile : penalty for bad profile in hydrophobic tail
Parameters:
ScFunc[12].from = 10
ScFunc[12].to = PROFILE_END
ScFunc[12].par1 = 0.20 threshold
ScFunc[12].par2 = -12.00 penalty
ScFunc[12].wfunc = 1.00
Function 13 = Higher_Average: function for hydrophobic region [10..C_end] (for at least the par4=8 last AAs)
Parameters:
ScFunc[13].from = 10
ScFunc[13].to = SEQUENCE_CEND
ScFunc[13].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[13].par1 = 12.35 mean hydrophobicity for at least the 8 last AAs was calculated
ScFunc[13].par2 = 1.57 dispersion was calculated
ScFunc[13].par4 = 8 minimal length of hydrophobic region
ScFunc[13].wfunc = 1.00
ScFunc[13].distr_type = F_GAUSS
Function 14 = Higher_Average : function for hydrophobic tail [26..C_end](for at least the par4=8 last AAs)
Parameters:
ScFunc[14].from = 26 (after profile-end)
ScFunc[14].to = SEQUENCE_CEND
ScFunc[14].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[14].par1 = 12.44 mean hydrophobicity for at least the 8 last AAs was calculated
ScFunc[14].par2 = 2.49 dispersion was calculated
ScFunc[14].par4 = 8 minimal length of tail for calculation of hydrophobicity parameters
ScFunc[14].wfunc = 1.00
ScFunc[14].distr_type = F_GAUSS
Function 15 = Sliding_Window : penalty for too short even hydrophobic section
Parameters:
ScFunc[15].from = 9
ScFunc[15].to = SEQUENCE_CEND
ScFunc[15].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[15].par1 = 9.00 threshold for windows containig Leu (min mean window hydrophobicity)
ScFunc[15].par2 = 6.00 threshold for windows without Leu
ScFunc[15].par3 = -12.00 penalty
ScFunc[15].par4 = 4 winlen
ScFunc[15].par5 = 5 min number of windows one after another
ScFunc[15].wfunc = 1.00
Function 16 = Post_Sliding_Window_Polar_Penalty : penalty for polar windows in the hydrophobic tail
Parameters:
ScFunc[16].from = 10
ScFunc[16].to = SEQUENCE_CEND
ScFunc[16].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[16].par1 = 1.50 minimum of mean hydrophobicity per window
ScFunc[16].par2 = -4.00 penalty
ScFunc[16].par3 = 0.50 threshold for extreme windows
ScFunc[16].par4 = 3 winlen
ScFunc[16].wfunc = 1.00
Function 17 = Post_Sliding_Window_SGC_Penalty : penalty for too long SGC - sections (len = par4) in hydrophobic tail
Parameters:
ScFunc[17].from = 9
ScFunc[17].to = SEQUENCE_CEND
ScFunc[17].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[17].par1 = -12.00 penalty
ScFunc[17].par2 = 8.20 threshold for hydrophobicity of a window with len=(winlen+1)
ScFunc[17].par4 = 3 winlen
ScFunc[17].par5 = 2 are max allowed per window
ScFunc[17].wfunc = 1.00
Function 18 = LVI_contents : contents of Leu, Val, Ile in the hydrophobic tail
Parameters:
ScFunc[18].from = 10
ScFunc[18].to = SEQUENCE_CEND
ScFunc[18].par1 = 15.00 threshold
ScFunc[18].par2 = -12.00 penalty
ScFunc[18].wfunc = 1.00
Function 19 = Combi_FWHY_contents_2win : penalty if more than 40% WHFY and 2 disconnected windows (l=4) with > 2 aromats
Parameters:
ScFunc[19].from = 9
ScFunc[19].to = SEQUENCE_CEND
ScFunc[19].PropertyName = ZVEL_AROMA WHFY sections
ScFunc[19].par1 = 40.00 threshold: percentage of aromats in tail
ScFunc[19].par2 = -12.00 penalty
ScFunc[19].par4 = 4 winlen
ScFunc[19].par5 = 2 aromats are max allowed per window if par1 is exceeded
ScFunc[19].wfunc = 1.00
Function 20 = Sliding_Window : penalty for small (according to volume) windows in tail
Parameters:
ScFunc[20].from = 9
ScFunc[20].to = SEQUENCE_CEND
ScFunc[20].PropertyName = HAGECH94_V volume scale
ScFunc[20].par1 = 110.00 threshold (min mean window volume)
ScFunc[20].par2 = -12.00 penalty
ScFunc[20].par4 = 4 winlen
ScFunc[20].par5 = 5 min number of windows one after another
ScFunc[20].wfunc = 1.00
Function 21 = Sum2 : volume function for two positions
Parameters:
ScFunc[21].from = -1 Position 1
ScFunc[21].to = 2 Position 2
ScFunc[21].PropertyName = HAGECH94_V mean volume of residues
ScFunc[21].par1 = 203.85 mean volume was calculated
ScFunc[21].par2 = 33.01 dispersion was calculated
ScFunc[21].wfunc = 0.50
ScFunc[21].distr_type = F_GAUSS
Last modified: 7th February 2003