#
# ------------------------------------------------------------------- #
#
# package *-> main.IRIX <-*
# *************************
#
# name of executable : main.IRIX
# time of program compilation : Jan 30 1998 (10:35:00)
# time of program execution : Fri Jan 30 10:35:12 1998
# version of the code : $s ($Revision: 1.11 $)
#
ReadAapLib: AAProperty library opened
Number of entrys in AapLib: <638>
-->ReadGPILib: GPI library opened
ID:
AALen: <411>
number of AC-num: <1>
AcNum : <0> :
GPIPos: <385>
GPICom: <.>
SEQ:
nfile: <1>
flag: <1>
number of entries of file 1 : 1
number of accepted entries of file 1 : 1
total number of entries : 1
-->Statistic_confidence of GPILib 1 :
number of accepted entries : 1
number of entries with certain GPI-site : 1
number of entries with potential GPI-site : 0
number of entries with GPI-site by similarity : 0
-->GPIStatistic_Length: GPILibNumber = 1
Lmin : 26 ( entry: MDP1_HUMAN, file: 1 )
Lmax : 26 ( entry: MDP1_HUMAN, file: 1 )
deltaL : 0
number of intervals : 1
interval of length from to number of entries
1 26 26 1
total number of entries : 1
-->Statistic_taxonomy of GPILib 1 / total number of entries 1
1 EUKARYOTA
1 ..METAZOA
1 ....VERTEBRATA
1 ......MAMMALIA
1 ........PRIMATES
-->ReadGPILib: GPI library opened
INFO> ReadGPILib: VARSPLIC line in entry .!!
INFO> ReadGPILib: VARSPLIC line in entry .!!
INFO> ReadGPILib: VARSPLIC line in entry .!!
INFO> ReadGPILib: VARSPLIC line in entry .!!
INFO> EntryExists: excluded, equal AC-Num= with , file <1> .!!
INFO> ReadGPILib: VARSPLIC line in entry .!!
INFO> ReadGPILib: VARSPLIC line in entry .!!
number of entries of file 2 : 155
number of accepted entries of file 2 : 154
total number of entries : 155
-->Statistic_confidence of GPILib 2 :
number of accepted entries : 154
number of entries with certain GPI-site : 35
number of entries with potential GPI-site : 55
number of entries with GPI-site by similarity : 64
-->GPIStatistic_Length: GPILibNumber = 2
Lmin : 9 ( entry: PAG1_TRYBB, file: 2 )
Lmax : 56 ( entry: GP46_LEIAM, file: 2 )
deltaL : 5
number of intervals : 10
interval of length from to number of entries
1 9 14 1
2 15 19 27
3 20 24 64
4 25 29 48
5 30 34 8
6 35 39 4
7 40 44 0
8 45 49 1
9 50 54 0
10 55 59 1
total number of entries : 154
-->Statistic_taxonomy of GPILib 2 / total number of entries 154
1 VIRIDAE
153 EUKARYOTA
103 ..METAZOA
3 ....INSECTA
98 ....VERTEBRATA
3 ......PISCES
4 ......AVES
91 ......MAMMALIA
49 ........PRIMATES
10 ..FUNGI
40 ..PROTOZOA
-->Flags of all entries except PROTOZOA switched off
-->Flags of all entries with AALen-GPIPos > 31 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
possible largest subset found: Q = 28
possible largest subset found: Q = 22
possible largest subset found: Q = 18
largest subset found: q = 18
number of 0's in found largest subset: 0
-->GPIPOS -15 total seq. 18 counted seq 18 (100%)
0 A 1 C 1 D 1 E 0 F 3 G 0 H 0 I 2 K 0 L
0 M 0 N 3 P 0 Q 0 R 1 S 4 T 2 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_G_T: 0.71|two AA frequency -> GT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_T: 0.71|two AA frequency -> PT (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_G_T: 0.71|two AA frequency -> GT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_P_T: 0.71|two AA frequency -> PT (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -14 total seq. 18 counted seq 18 (100%)
2 A 2 C 0 D 4 E 0 F 5 G 0 H 0 I 2 K 1 L
0 M 1 N 0 P 0 Q 0 R 0 S 1 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_E_G: 0.85|two AA frequency -> EG (Eisenhaber & Eisenhaber, 1997)
MAXF760105: 0.76|Normalized frequency of zeta L (Maxfield-Scheraga, 1976)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_E_G: 0.85|two AA frequency -> EG (Eisenhaber & Eisenhaber, 1997)
MAXF760105: 0.76|Normalized frequency of zeta L (Maxfield-Scheraga, 1976)
-->GPIPOS -13 total seq. 18 counted seq 18 (100%)
0 A 0 C 1 D 2 E 0 F 1 G 0 H 0 I 6 K 0 L
0 M 1 N 2 P 1 Q 1 R 0 S 2 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ONE_AA__K_: 0.85|single AA frequency -> K (Eisenhaber & Eisenhaber, 1997)
KRIW790102: 0.81|Fraction of site occupied by water (Krigbaum-Komoriya, 1979)
KARP850103: 0.77|Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)
TWO_AA_E_K: 0.75|two AA frequency -> EK (Eisenhaber & Eisenhaber, 1997)
TWO_AA_K_P: 0.75|two AA frequency -> KP (Eisenhaber & Eisenhaber, 1997)
TWO_AA_K_T: 0.75|two AA frequency -> KT (Eisenhaber & Eisenhaber, 1997)
JANJ790102:-0.71|Transfer free energy (Janin, 1979)
JANJ780103: 0.71|Percentage of exposed residues (Janin et al., 1978)
RACS770103: 0.71|Side chain orientational preference (Rackovsky-Scheraga, 1977)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ONE_AA__K_: 0.85|single AA frequency -> K (Eisenhaber & Eisenhaber, 1997)
KRIW790102: 0.81|Fraction of site occupied by water (Krigbaum-Komoriya, 1979)
KARP850103: 0.77|Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)
-->GPIPOS -12 total seq. 18 counted seq 18 (100%)
1 A 1 C 2 D 4 E 0 F 1 G 0 H 0 I 0 K 0 L
0 M 1 N 1 P 0 Q 2 R 3 S 2 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_E_S: 0.76|two AA frequency -> ES (Eisenhaber & Eisenhaber, 1997)
CIDH920102:-0.74|Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_E_S: 0.76|two AA frequency -> ES (Eisenhaber & Eisenhaber, 1997)
CIDH920102:-0.74|Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)
-->GPIPOS -11 total seq. 18 counted seq 18 (100%)
1 A 0 C 1 D 1 E 0 F 2 G 0 H 0 I 2 K 0 L
0 M 1 N 3 P 1 Q 1 R 3 S 2 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
RACS770101: 0.84|Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)
KARP850102: 0.82|Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)
QIAN880134: 0.81|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
ISOY800104: 0.81|Normalized relative frequency of bend R (Isogai et al., 1980)
CHOP780213: 0.80|Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
PRAM900104: 0.80|Relative frequency in reverse-turn (Prabhakaran, 1990)
LEVM780103: 0.79|Normalized frequency of reverse turn, with weights (Levitt, 1978)
MEIH800101: 0.78|Average reduced distance for C-alpha (Meirovitch et al., 1980)
WERD780101:-0.78|Propensity to be buried inside (Wertz-Scheraga, 1978)
NISK860101:-0.78|14 A contact number (Nishikawa-Ooi, 1986)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
RACS770101: 0.84|Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)
QIAN880134: 0.81|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
ROSG850101:-0.75|Mean area buried on transfer (Rose et al., 1985)
QIAN880116: 0.74|Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)
OOBM850105: 0.72|Optimized side chain interaction parameter (Oobatake et al., 1985)
TWO_AA_P_S: 0.70|two AA frequency -> PS (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -10 total seq. 18 counted seq 18 (100%)
1 A 0 C 2 D 4 E 0 F 1 G 0 H 0 I 2 K 0 L
0 M 1 N 3 P 0 Q 1 R 0 S 2 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_E_P: 0.76|two AA frequency -> EP (Eisenhaber & Eisenhaber, 1997)
WIM_HYD_X8:-0.73|Hydrophobicity at membrane interfaces: deltaG_WLXLL pH=8
ROBB760102: 0.73|Information measure for N-terminal helix (Robson-Suzuki, 1976)
WIM_HYD_R8:-0.73|Hydrophobicity at membrane interfaces: deltaG_residue pH=8
CHOP780204: 0.72|Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)
GEIM800106:-0.71|Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_E_P: 0.76|two AA frequency -> EP (Eisenhaber & Eisenhaber, 1997)
WIM_HYD_X8:-0.73|Hydrophobicity at membrane interfaces: deltaG_WLXLL pH=8
ROBB760102: 0.73|Information measure for N-terminal helix (Robson-Suzuki, 1976)
WIM_HYD_R8:-0.73|Hydrophobicity at membrane interfaces: deltaG_residue pH=8
GEIM800106:-0.71|Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)
-->GPIPOS -9 total seq. 18 counted seq 18 (100%)
1 A 3 C 1 D 1 E 0 F 1 G 1 H 0 I 2 K 0 L
0 M 1 N 3 P 1 Q 0 R 1 S 2 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_C_P: 0.74|two AA frequency -> CP (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_C_P: 0.74|two AA frequency -> CP (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -8 total seq. 18 counted seq 18 (100%)
1 A 0 C 3 D 3 E 0 F 2 G 0 H 1 I 2 K 0 L
0 M 0 N 1 P 0 Q 0 R 2 S 2 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
CIDH920101:-0.71|Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
CIDH920101:-0.71|Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)
-->GPIPOS -7 total seq. 18 counted seq 18 (100%)
0 A 0 C 0 D 0 E 0 F 3 G 0 H 0 I 1 K 0 L
0 M 2 N 4 P 2 Q 0 R 2 S 1 T 0 V 3 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ROBB760112: 0.81|Information measure for coil (Robson-Suzuki, 1976)
CHOP780211: 0.77|Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)
PALJ810115: 0.76|Normalized frequency of turn in alpha+beta class (Palau et al., 1981)
PALJ810114: 0.71|Normalized frequency of turn in all-beta class (Palau et al., 1981)
QIAN880134: 0.71|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
QIAN880106:-0.70|Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ROBB760112: 0.81|Information measure for coil (Robson-Suzuki, 1976)
PALJ810114: 0.71|Normalized frequency of turn in all-beta class (Palau et al., 1981)
QIAN880134: 0.71|Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)
QIAN880106:-0.70|Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)
-->GPIPOS -6 total seq. 18 counted seq 18 (100%)
2 A 0 C 1 D 6 E 0 F 0 G 0 H 1 I 2 K 0 L
0 M 0 N 0 P 1 Q 1 R 2 S 2 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ONE_AA__E_: 0.83|single AA frequency -> E (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_E: 0.73|two AA frequency -> AE (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_K: 0.73|two AA frequency -> EK (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_S: 0.73|two AA frequency -> ES (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_T: 0.73|two AA frequency -> ET (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ONE_AA__E_: 0.83|single AA frequency -> E (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -5 total seq. 18 counted seq 18 (100%)
2 A 0 C 0 D 1 E 0 F 1 G 0 H 1 I 2 K 0 L
1 M 3 N 2 P 0 Q 0 R 1 S 4 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_N_T: 0.76|two AA frequency -> NT (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_N_T: 0.76|two AA frequency -> NT (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -4 total seq. 18 counted seq 18 (100%)
0 A 1 C 1 D 5 E 0 F 1 G 0 H 0 I 1 K 0 L
0 M 4 N 0 P 0 Q 0 R 2 S 3 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_N_E: 0.83|two AA frequency -> NE (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_T: 0.71|two AA frequency -> ET (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_N_E: 0.83|two AA frequency -> NE (Eisenhaber & Eisenhaber, 1997)
TWO_AA_E_T: 0.71|two AA frequency -> ET (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -3 total seq. 18 counted seq 18 (100%)
1 A 0 C 3 D 0 E 0 F 1 G 1 H 0 I 3 K 0 L
0 M 1 N 1 P 0 Q 1 R 0 S 6 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_D_T: 0.81|two AA frequency -> DT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_K_T: 0.81|two AA frequency -> KT (Eisenhaber & Eisenhaber, 1997)
ONE_AA__T_: 0.79|single AA frequency -> T (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_D_T: 0.81|two AA frequency -> DT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_K_T: 0.81|two AA frequency -> KT (Eisenhaber & Eisenhaber, 1997)
ONE_AA__T_: 0.79|single AA frequency -> T (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -2 total seq. 18 counted seq 18 (100%)
0 A 5 C 1 D 1 E 0 F 3 G 0 H 0 I 0 K 1 L
0 M 1 N 0 P 0 Q 0 R 1 S 4 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_C_T: 0.85|two AA frequency -> CT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_C_G: 0.73|two AA frequency -> CG (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_C_T: 0.85|two AA frequency -> CT (Eisenhaber & Eisenhaber, 1997)
TWO_AA_C_G: 0.73|two AA frequency -> CG (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS -1 total seq. 18 counted seq 18 (100%)
0 A 1 C 1 D 0 E 0 F 5 G 0 H 0 I 2 K 0 L
0 M 0 N 2 P 1 Q 2 R 2 S 1 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ONE_AA__G_: 0.77|single AA frequency -> G (Eisenhaber & Eisenhaber, 1997)
CHAM810101:-0.77|Steric parameter (Charton, 1981)
LEVM760104: 0.76|Side chain torsion angle phi(AAAR) (Levitt, 1976)
FAUJ880102:-0.72|Smoothed upsilon steric parameter (Fauchere et al., 1988)
TWO_AA_R_G: 0.71|two AA frequency -> RG (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_K: 0.71|two AA frequency -> GK (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_P: 0.71|two AA frequency -> GP (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_S: 0.71|two AA frequency -> GS (Eisenhaber & Eisenhaber, 1997)
QIAN880105:-0.71|Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)
RICJ880115: 0.70|Relative preference value at C-cap (Richardson-Richardson, 1988)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ONE_AA__G_: 0.77|single AA frequency -> G (Eisenhaber & Eisenhaber, 1997)
CHAM810101:-0.77|Steric parameter (Charton, 1981)
QIAN880105:-0.71|Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)
RICJ880115: 0.70|Relative preference value at C-cap (Richardson-Richardson, 1988)
-->GPIPOS 0 total seq. 18 counted seq 18 (100%)
1 A 0 C 4 D 0 E 0 F 2 G 0 H 0 I 0 K 0 L
0 M 3 N 0 P 0 Q 0 R 8 S 0 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
UDF_OMEGA0: 0.90|Udenfriend : (omega + 0)- site
TWO_AA_D_S: 0.86|two AA frequency -> DS (Eisenhaber & Eisenhaber, 1997)
ONE_AA__S_: 0.83|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_N_S: 0.78|two AA frequency -> NS (Eisenhaber & Eisenhaber, 1997)
RICJ880103: 0.72|Relative preference value at N-cap (Richardson-Richardson, 1988)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
UDF_OMEGA0: 0.90|Udenfriend : (omega + 0)- site
TWO_AA_D_S: 0.86|two AA frequency -> DS (Eisenhaber & Eisenhaber, 1997)
ONE_AA__S_: 0.83|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
RICJ880103: 0.72|Relative preference value at N-cap (Richardson-Richardson, 1988)
-->GPIPOS 1 total seq. 18 counted seq 18 (100%)
2 A 0 C 1 D 0 E 1 F 3 G 0 H 0 I 0 K 0 L
0 M 5 N 0 P 0 Q 0 R 5 S 1 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
UDF_OMEGA0: 0.94|Udenfriend : (omega + 0)- site
TWO_AA_N_S: 0.87|two AA frequency -> NS (Eisenhaber & Eisenhaber, 1997)
RICJ880103: 0.82|Relative preference value at N-cap (Richardson-Richardson, 1988)
WERD780102: 0.73|Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
UDF_OMEGA0: 0.94|Udenfriend : (omega + 0)- site
TWO_AA_N_S: 0.87|two AA frequency -> NS (Eisenhaber & Eisenhaber, 1997)
RICJ880103: 0.82|Relative preference value at N-cap (Richardson-Richardson, 1988)
WERD780102: 0.73|Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)
-->GPIPOS 2 total seq. 18 counted seq 18 (100%)
4 A 0 C 0 D 0 E 0 F 0 G 0 H 0 I 0 K 1 L
0 M 0 N 0 P 0 Q 0 R 13 S 0 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ONE_AA__S_: 0.95|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_S: 0.87|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ONE_AA__S_: 0.95|single AA frequency -> S (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 3 total seq. 18 counted seq 18 (100%)
2 A 0 C 0 D 0 E 8 F 1 G 0 H 1 I 0 K 1 L
0 M 0 N 1 P 0 Q 0 R 3 S 1 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ONE_AA__F_: 0.90|single AA frequency -> F (Eisenhaber & Eisenhaber, 1997)
TWO_AA_F_S: 0.85|two AA frequency -> FS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_F: 0.75|two AA frequency -> AF (Eisenhaber & Eisenhaber, 1997)
WERD780103: 0.75|Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ONE_AA__F_: 0.90|single AA frequency -> F (Eisenhaber & Eisenhaber, 1997)
WERD780103: 0.75|Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)
-->GPIPOS 4 total seq. 18 counted seq 18 (100%)
1 A 0 C 0 D 0 E 0 F 1 G 1 H 1 I 1 K 6 L
0 M 0 N 0 P 0 Q 0 R 1 S 2 T 4 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_L_V: 0.90|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
ONE_AA__L_: 0.77|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
ZVEL_ALI_1: 0.77|AA Property : aliphatic
NAKH900112: 0.76|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900111: 0.75|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.74|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.73|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH920108: 0.72|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_L_V: 0.90|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.82|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
ONE_AA__L_: 0.77|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
ZVEL_ALI_1: 0.77|AA Property : aliphatic
-->GPIPOS 5 total seq. 18 counted seq 18 (100%)
0 A 0 C 0 D 0 E 0 F 2 G 0 H 5 I 2 K 3 L
0 M 0 N 0 P 0 Q 1 R 0 S 2 T 3 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ZVEL_ALI_1: 0.82|AA Property : aliphatic
ANDN920101:-0.80|alpha-CH chemical shifts (Andersen et al., 1992)
TWO_AA_I_L: 0.73|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_I_V: 0.73|two AA frequency -> IV (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.72|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
COHE430101: 0.70|Partial specific volume (Cohn-Edsall, 1943)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ZVEL_ALI_1: 0.82|AA Property : aliphatic
ANDN920101:-0.80|alpha-CH chemical shifts (Andersen et al., 1992)
TWO_AA_I_L: 0.73|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_I_V: 0.73|two AA frequency -> IV (Eisenhaber & Eisenhaber, 1997)
NAKH920105: 0.72|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
COHE430101: 0.70|Partial specific volume (Cohn-Edsall, 1943)
-->GPIPOS 6 total seq. 18 counted seq 18 (100%)
0 A 0 C 0 D 0 E 0 F 0 G 0 H 0 I 5 K 0 L
0 M 2 N 0 P 0 Q 1 R 6 S 2 T 2 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_K_S: 0.90|two AA frequency -> KS (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_K_S: 0.90|two AA frequency -> KS (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 7 total seq. 18 counted seq 18 (100%)
1 A 0 C 0 D 0 E 1 F 2 G 0 H 0 I 8 K 0 L
1 M 0 N 0 P 0 Q 0 R 0 S 4 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_K_T: 0.90|two AA frequency -> KT (Eisenhaber & Eisenhaber, 1997)
ONE_AA__K_: 0.86|single AA frequency -> K (Eisenhaber & Eisenhaber, 1997)
TWO_AA_G_K: 0.72|two AA frequency -> GK (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_K_T: 0.90|two AA frequency -> KT (Eisenhaber & Eisenhaber, 1997)
ONE_AA__K_: 0.86|single AA frequency -> K (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 8 total seq. 18 counted seq 18 (100%)
4 A 0 C 0 D 0 E 0 F 0 G 0 H 1 I 2 K 1 L
0 M 0 N 1 P 3 Q 0 R 5 S 1 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_S: 0.83|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_S: 0.71|two AA frequency -> QS (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_S: 0.83|two AA frequency -> AS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_Q_S: 0.71|two AA frequency -> QS (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 9 total seq. 18 counted seq 18 (100%)
0 A 0 C 0 D 0 E 6 F 1 G 0 H 1 I 0 K 4 L
0 M 0 N 4 P 0 Q 1 R 0 S 1 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_L_F: 0.82|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
TWO_AA_F_P: 0.82|two AA frequency -> FP (Eisenhaber & Eisenhaber, 1997)
ONE_AA__F_: 0.70|single AA frequency -> F (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_L_F: 0.82|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
TWO_AA_F_P: 0.82|two AA frequency -> FP (Eisenhaber & Eisenhaber, 1997)
ONE_AA__F_: 0.70|single AA frequency -> F (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 10 total seq. 18 counted seq 18 (100%)
6 A 0 C 0 D 0 E 0 F 0 G 0 H 0 I 0 K 6 L
0 M 0 N 2 P 0 Q 1 R 2 S 0 T 0 V 0 W 1 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_L: 0.94|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.72|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.71|Udenfriend : (omega + 2)- site
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_L: 0.94|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.72|Udenfriend : (omega + 1)- site
UDF_OMEGA2: 0.71|Udenfriend : (omega + 2)- site
-->GPIPOS 11 total seq. 18 counted seq 18 (100%)
2 A 0 C 0 D 0 E 2 F 0 G 0 H 0 I 0 K 9 L
0 M 0 N 0 P 0 Q 0 R 1 S 0 T 1 V 3 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
ONE_AA__L_: 0.91|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_W: 0.83|two AA frequency -> LW (Eisenhaber & Eisenhaber, 1997)
TWO_AA_A_L: 0.75|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_F: 0.75|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.74|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.74|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.71|AA composition of mt-proteins (Nakashima et al., 1990)
BROC820101: 0.71|Retention coefficient in TFA (Browne et al., 1982)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
ONE_AA__L_: 0.91|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900112: 0.74|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
BROC820101: 0.71|Retention coefficient in TFA (Browne et al., 1982)
-->GPIPOS 12 total seq. 18 counted seq 18 (100%)
2 A 0 C 0 D 0 E 1 F 0 G 0 H 3 I 0 K 5 L
1 M 0 N 0 P 0 Q 0 R 4 S 1 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
NAKH900112: 0.87|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
NAKH900103: 0.87|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900105: 0.87|AA composition of mt-proteins from animal (Nakashima et al., 1990)
TWO_AA_L_S: 0.83|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
NAKH900107: 0.79|AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)
NAKH920108: 0.77|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH920105: 0.76|AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900111: 0.75|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
TWO_AA_I_L: 0.71|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
NAKH900112: 0.87|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
TWO_AA_L_S: 0.83|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
TWO_AA_I_L: 0.71|two AA frequency -> IL (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 13 total seq. 18 counted seq 18 (100%)
5 A 0 C 0 D 0 E 0 F 0 G 0 H 2 I 0 K 2 L
0 M 0 N 0 P 0 Q 0 R 2 S 2 T 5 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_V: 0.87|two AA frequency -> AV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.79|Udenfriend : (omega + 1)- site
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_V: 0.87|two AA frequency -> AV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.79|Udenfriend : (omega + 1)- site
-->GPIPOS 14 total seq. 18 counted seq 18 (100%)
3 A 0 C 0 D 0 E 4 F 0 G 1 H 0 I 0 K 3 L
0 M 0 N 0 P 0 Q 0 R 0 S 0 T 6 V 0 W 1 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_F_V: 0.82|two AA frequency -> FV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
TWO_AA_A_V: 0.72|two AA frequency -> AV (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.72|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ONE_AA__V_: 0.70|single AA frequency -> V (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_F_V: 0.82|two AA frequency -> FV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.77|Udenfriend : (omega + 1)- site
TWO_AA_A_V: 0.72|two AA frequency -> AV (Eisenhaber & Eisenhaber, 1997)
TWO_AA_L_V: 0.72|two AA frequency -> LV (Eisenhaber & Eisenhaber, 1997)
ONE_AA__V_: 0.70|single AA frequency -> V (Eisenhaber & Eisenhaber, 1997)
-->GPIPOS 15 total seq. 18 counted seq 18 (100%)
2 A 0 C 1 D 0 E 0 F 0 G 0 H 0 I 0 K 9 L
0 M 0 N 0 P 0 Q 0 R 5 S 0 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_L_S: 0.93|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
ONE_AA__L_: 0.85|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.76|AA composition of mt-proteins from animal (Nakashima et al., 1990)
NAKH900103: 0.75|AA composition of mt-proteins (Nakashima et al., 1990)
NAKH900112: 0.72|Transmembrane regions of mt-proteins (Nakashima et al., 1990)
TWO_AA_A_L: 0.70|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_L_S: 0.93|two AA frequency -> LS (Eisenhaber & Eisenhaber, 1997)
ONE_AA__L_: 0.85|single AA frequency -> L (Eisenhaber & Eisenhaber, 1997)
NAKH900105: 0.76|AA composition of mt-proteins from animal (Nakashima et al., 1990)
-->GPIPOS 16 total seq. 18 counted seq 18 (100%)
5 A 0 C 0 D 0 E 4 F 1 G 0 H 0 I 0 K 6 L
1 M 0 N 0 P 0 Q 0 R 0 S 0 T 1 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.86|Udenfriend : (omega + 2)- site
TWO_AA_L_F: 0.77|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.76|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.75|Udenfriend : (omega + 1)- site
NAKH900109: 0.74|AA composition of membrane proteins (Nakashima et al., 1990)
NAKH920108: 0.71|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_L: 0.86|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.86|Udenfriend : (omega + 2)- site
TWO_AA_L_F: 0.77|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
NAKH900111: 0.76|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
UDF_OMEGA1: 0.75|Udenfriend : (omega + 1)- site
-->GPIPOS 17 total seq. 18 counted seq 18 (100%)
5 A 0 C 0 D 0 E 5 F 1 G 0 H 1 I 0 K 3 L
0 M 0 N 0 P 0 Q 0 R 0 S 1 T 2 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_F: 0.87|two AA frequency -> AF (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.75|Udenfriend : (omega + 1)- site
NAKH900111: 0.75|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
NAKH920108: 0.73|AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)
NAKH900109: 0.71|AA composition of membrane proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_F: 0.87|two AA frequency -> AF (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.79|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.75|Udenfriend : (omega + 1)- site
NAKH900111: 0.75|Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)
-->GPIPOS 18 total seq. 18 counted seq 13 (72%)
2 A 0 C 0 D 0 E 5 F 0 G 0 H 1 I 0 K 3 L
0 M 0 N 0 P 0 Q 0 R 1 S 0 T 0 V 1 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_L_F: 0.88|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
ONE_AA__F_: 0.78|single AA frequency -> F (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
BROC820101: 0.75|Retention coefficient in TFA (Browne et al., 1982)
TWO_AA_A_F: 0.74|two AA frequency -> AF (Eisenhaber & Eisenhaber, 1997)
NAKH900110: 0.71|Normalized composition of membrane proteins (Nakashima et al., 1990)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_L_F: 0.88|two AA frequency -> LF (Eisenhaber & Eisenhaber, 1997)
ONE_AA__F_: 0.78|single AA frequency -> F (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
BROC820101: 0.75|Retention coefficient in TFA (Browne et al., 1982)
-->GPIPOS 19 total seq. 18 counted seq 13 (72%)
4 A 0 C 0 D 0 E 0 F 0 G 0 H 0 I 0 K 2 L
2 M 0 N 0 P 1 Q 0 R 1 S 0 T 3 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_V: 0.82|two AA frequency -> AV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.74|Udenfriend : (omega + 1)- site
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_V: 0.82|two AA frequency -> AV (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA1: 0.74|Udenfriend : (omega + 1)- site
-->GPIPOS 20 total seq. 18 counted seq 12 (66%)
5 A 0 C 0 D 0 E 1 F 0 G 0 H 0 I 0 K 4 L
0 M 0 N 0 P 1 Q 0 R 0 S 1 T 0 V 0 W 0 Y
SelectAapCorrelation: <10 best or r > 0.70>
TWO_AA_A_L: 0.96|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.75|Udenfriend : (omega + 1)- site
ONE_AA__A_: 0.74|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997)
SelectAapCorrelation: <10 best or r > 0.70 families excluded>
TWO_AA_A_L: 0.96|two AA frequency -> AL (Eisenhaber & Eisenhaber, 1997)
UDF_OMEGA2: 0.76|Udenfriend : (omega + 2)- site
UDF_OMEGA1: 0.75|Udenfriend : (omega + 1)- site
ONE_AA__A_: 0.74|single AA frequency -> A (Eisenhaber & Eisenhaber, 1997)
#
#
# Normal termination of program main.IRIX.
# total program time: CPU 0:00:17.13 sec, elapsed time 0:00:20.00 sec
#