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#
# ------------------------------------------------------------------- #
#
# package *-> main.Linux_i686 <-*
# *******************************
#
# copyright by Birgit Eisenhaber, September 1997
# E-mail Birgit.Eisenhaber@imp.univie.ac.at
# WWW http://mendel.imp.univie.ac.at
# Post IMP, Dr. Bohr-Gasse 7, A-1030 Vienna, Austria
# Tel. +43-1-79730557, FAX +43-1-7987153
# All rights reserved.
#
# name of executable : main.Linux_i686
# time of program compilation : Jun 17 2003 (16:16:40)
# time of program execution : Tue Jun 17 16:50:24 2003
# version of the code : Revision: 4.1 (Date: 2003/05/20 14:22:12)
#
ReadAapLib: AAProperty library opened
Number of entries in AapLib: <682>
-->All selects were switched on.
Selection parameters:
---------------------
0: PToken: OC
SToken:
RExp: FUNGI
is_SToken: 0
expect: 1
-->begin GPI-site evaluations
-->ReadGPILib: GPI library opened
number of entries of file 1 : 254
number of accepted entries of file 1 : 254
total number of entries : 254
-->Statistic_confidence of GPILib 1 :
number of accepted entries : 254
number of entries with certain GPI-site : 5
number of entries with potential GPI-site : 249
number of entries with GPI-site by similarity : 0
-->GPIStatistic_Length: GPILibNumber = 1
Lmin : 17 ( entry: 7609, file: 1 )
Lmax : 33 ( entry: AAC35942, file: 1 )
deltaL : 5
number of intervals : 4
interval of length from to number of entries
1 17 22 72
2 23 27 133
3 28 32 48
4 33 37 1
total number of entries : 254
-->Statistic_taxonomy of GPILib 1 / total number of entries 254
254 ..Fungi
-->degree of the polynom for fitting: 6
-->Calc_EVD_Param_PolyFit: file of values opened
SSerr = 10.56744212
The 7 polynomial coefficients (starting from the lowest power on) are:
beta[0] = -7.186749e+00
beta[1] = -2.443516e-01
beta[2] = -4.286925e-03
beta[3] = -5.082074e-05
beta[4] = -3.594888e-07
beta[5] = -1.340176e-09
beta[6] = -2.006659e-12
Thresholds for GPI-anchor selecting:
P-site: score = 2.00 p = 4.558987e-04
score = 0.00 p = 7.562588e-04
S-site: score = -2.00 p = 1.212103e-03
-->All flags were switched on.
-->Switch_Off_Tax: number of entries before procedure : 254
-->Flags of all entries except Fungi switched off
-->Switch_Off_Tax: number of entries after procedure : 254
-->Switch_Off_Len: number of entries before procedure : 254
-->Flags of all entries with AALen-GPIPos > 32 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 253
possible largest subset found: Q = 233
possible largest subset found: Q = 227
possible largest subset found: Q = 222
possible largest subset found: Q = 216
possible largest subset found: Q = 206
possible largest subset found: Q = 192
largest subset found: q = 192
number of 0's in found largest subset: 0
-->Mean and Dispersion of property NAKH920105 from -11 to -1
Mean: 5.441908
Dispersion: 1.527800
-->Mean and Dispersion of property NAKH920105 from 3 to 8
Mean: 6.905547
Dispersion: 2.376567
-->Mean and Dispersion of property NAKH920105 from 10 to Sequence C-end
Mean: 12.001243
Dispersion: 1.720968
-->Mean and Dispersion of property NAKH920105 from 26 to Sequence C-end
Mean: 12.630885
Dispersion: 2.396485
-->Mean and Dispersion of property HAGECH94_V from 3 to 8
Mean: 129.815104
Dispersion: 16.220161
-->Mean and Dispersion of property at position(s) -1 0 1 2
number of selected entries: 192
Mean : 386.603646
Dispersion: 44.154918
-->Mean and Dispersion of property at position(s) 0 1 2
number of selected entries: 192
Mean : 273.077604
Dispersion: 32.784327
-->Mean and Dispersion of property at position(s) 0 1
number of selected entries: 192
Mean : 185.074479
Dispersion: 31.224105
-->Mean and Dispersion of property at position(s) 1 2
number of selected entries: 192
Mean : 178.174479
Dispersion: 26.730564
-->All flags were switched on.
-->Switch_Off_Tax: number of entries before procedure : 254
-->Flags of all entries except Fungi switched off
-->Switch_Off_Tax: number of entries after procedure : 254
-->Switch_Off_Len: number of entries before procedure : 254
-->Flags of all entries with AALen-GPIPos > 32 switched off
-->Flags of all entries with AALen-GPIPos < 17 switched off
-->Switch_Off_Len: number of entries after procedure : 253
NSubFam = 99
Profile:
Ala
0.4 0.4 0.1 0.2 0.4 0.2 0.2 0.2 0.4 0.1 -0.1 -0.0 0.0 -0.0 0.4
0.4 1.5 1.9 0.2 0.4 0.5 0.5 0.3 0.4 0.2 0.7 0.6 0.2 0.7 0.9
0.7 0.9 0.6 1.0 1.1 1.0 0.6 0.8 0.9 0.5 0.7
Cys
-0.3 -1.4 -2.6 -0.7 -0.0 -4.2 -4.0 -3.2 -2.6 0.2 -0.7 -3.2 -3.2 -3.2 -3.8
-0.7 -5.1 -1.4 -3.2 -0.8 -2.7 -1.4 -0.7 -0.7 -0.7 -1.4 -0.7 -0.8 -1.4 -0.3
0.5 -0.7 -1.4 -5.6 -5.6 -0.7 -1.4 -1.2 -0.4 -0.9 -0.7
Asp
-0.5 0.0 -0.4 -0.4 -0.5 -0.4 -1.4 -0.8 -0.3 -0.7 -0.5 -0.5 -0.5 -0.1 -0.3
-1.0 -5.1 -2.4 -1.2 -1.1 -1.1 -1.4 -1.4 -1.4 -1.4 -2.5 -4.6 -4.5 -2.5 -5.2
-4.2 -5.2 -5.4 -5.6 -5.6 -5.4 -5.5 -5.1 -2.2 -4.9 -4.7
Glu
-0.7 -0.5 -0.7 -0.7 -0.7 -0.8 -1.2 -0.5 -0.7 -0.2 -0.3 -0.3 -0.3 0.0 0.6
-6.2 -1.9 -5.9 -1.6 -1.1 -0.9 -0.5 -1.5 -1.3 -1.3 -2.0 -1.9 -2.7 -3.8 -5.2
-2.6 -1.9 -5.4 -5.6 -5.6 -5.4 -5.5 -2.5 -4.9 -4.9 -4.7
Phe
-0.8 -1.5 -0.8 -1.1 -2.2 -4.2 -4.0 -2.2 -1.1 -3.4 -1.1 -1.5 0.2 0.0 -2.2
-6.2 -5.1 -5.9 -0.8 -0.6 0.0 -0.2 0.2 -0.1 0.7 0.6 0.3 0.7 0.7 0.4
0.7 0.7 0.5 1.0 0.7 0.7 1.2 1.0 1.3 1.3 0.3
Gly
0.0 0.1 0.5 0.3 0.5 0.3 0.5 -0.1 0.3 0.1 0.2 0.1 -0.4 -0.5 0.4
1.2 1.3 1.1 0.4 -0.1 -0.2 0.4 0.2 0.6 0.6 0.4 0.6 0.5 0.3 0.3
0.8 0.6 0.4 0.4 0.1 -0.0 -0.0 -0.0 0.2 -0.5 0.6
His
-0.0 -0.2 -0.5 -0.5 -1.6 -4.2 -0.9 -1.6 -0.2 -0.5 -3.3 -0.9 -0.0 0.1 -0.9
-6.2 -5.1 -5.9 -0.5 0.6 -0.9 -0.0 -0.9 -1.6 -0.0 -3.9 -4.6 -4.5 -1.6 -5.2
-4.2 -5.2 -5.4 -5.6 -1.6 -1.6 -5.5 -0.7 -4.9 -0.4 -4.7
Ile
-1.2 -0.3 -0.5 -1.1 -1.1 -0.7 -0.7 -0.3 -0.1 -0.0 0.0 -0.5 -0.2 -0.6 -1.5
-6.2 -5.1 -5.9 -0.1 0.2 0.3 -0.5 0.1 -0.2 -0.2 0.3 -0.0 0.2 0.7 0.3
0.4 0.5 0.6 0.6 0.5 0.3 0.7 0.4 0.7 0.6 0.6
Lys
-0.8 -0.2 -1.0 -1.0 -0.1 0.1 -0.3 -0.4 -0.8 -0.6 -0.3 -0.2 0.2 0.6 -0.0
-6.2 -2.6 -5.9 -0.7 0.3 0.2 0.1 -1.2 -0.2 -0.3 -0.7 -0.3 -0.8 -1.9 -5.2
-1.9 -5.2 -5.4 -5.6 -5.6 -5.4 -5.5 -5.1 -4.9 -4.9 -4.7
Leu
-0.9 -1.9 -1.1 -1.1 -3.0 -1.9 -1.2 -1.6 -1.1 -1.3 -1.4 -1.9 -1.3 -1.5 -3.1
-6.2 -3.0 -2.3 -0.5 -0.5 0.2 -0.5 -0.3 -1.2 0.0 0.4 0.9 0.5 0.8 0.9
0.4 0.7 1.0 0.7 0.5 1.0 1.0 1.1 1.0 1.1 1.0
Met
-1.1 -0.7 -1.1 -1.1 -2.9 -1.1 -1.7 -0.3 -1.1 -0.4 -0.4 -1.7 -0.4 -0.2 -3.8
-6.2 -1.7 -5.9 -0.2 -0.2 0.5 -0.2 -1.1 0.4 -0.1 0.3 0.2 0.9 0.5 0.2
0.5 0.5 0.8 0.1 0.9 0.6 -0.1 0.8 0.8 0.8 1.1
Asn
-0.2 0.1 0.2 0.3 0.3 0.4 0.3 0.1 0.2 0.2 -0.4 -0.2 -0.6 0.4 0.5
1.7 -0.9 -0.6 0.9 0.6 0.1 -0.1 0.3 0.5 0.3 -0.9 -2.3 -0.7 -0.5 -1.2
-2.3 -2.3 -2.3 -5.6 -0.9 -5.4 -1.6 -5.1 -0.9 -1.8 -1.6
Pro
-0.1 -0.1 0.2 0.1 -0.6 0.3 0.1 0.4 0.0 0.0 -0.0 0.4 0.4 -0.4 -0.3
-6.2 -0.8 -5.9 0.1 -0.3 -1.1 -0.0 0.6 0.4 -0.7 -0.4 -1.0 -0.5 -1.7 -1.7
-1.0 -1.3 -2.4 -1.7 -5.6 -2.4 -5.5 -2.2 -1.4 -4.9 -4.7
Gln
0.2 -0.8 -0.2 -0.3 -0.4 -0.4 -0.8 -0.6 -0.4 -0.6 -0.6 -0.2 -0.8 -0.1 -0.8
-6.2 -1.5 -5.9 0.1 -0.3 -0.0 -0.4 0.1 -0.4 -0.3 -3.9 -1.1 -4.5 -2.2 -5.2
-2.2 -5.2 -2.2 -5.6 -5.6 -2.2 -5.5 -5.1 -1.2 -1.0 -1.5
Arg
-2.6 -3.8 -2.6 -1.2 -1.2 -1.5 -1.9 -0.8 -1.0 -1.5 -1.2 -1.5 -1.5 -1.0 -1.5
-6.2 -2.5 -5.9 -0.5 0.3 -0.4 -0.0 -0.7 -0.9 -1.0 -1.5 -4.6 -1.0 -2.6 -2.6
-2.6 -5.2 -5.4 -5.6 -5.6 -5.4 -5.5 -5.1 -4.9 -4.9 -4.7
Ser
1.3 1.3 1.2 1.3 1.3 1.5 1.5 1.4 1.3 1.4 1.5 1.4 1.1 0.7 1.2
1.7 1.3 1.1 1.0 0.7 -0.3 0.7 0.8 0.8 0.4 0.5 0.1 -0.1 -0.2 0.0
0.1 -0.4 -0.2 -0.1 -0.3 -0.2 -0.4 -1.0 -1.1 -0.5 -0.4
Thr
1.0 0.8 1.0 0.9 0.7 0.5 1.0 1.0 0.7 0.5 0.7 0.9 0.9 0.6 1.0
-6.2 -0.7 -0.7 -0.1 -0.2 0.3 0.4 -0.0 0.4 0.1 -0.3 -0.0 0.3 -0.6 -0.4
-0.1 -0.6 -0.2 -0.6 -0.2 -0.8 -0.8 -1.3 -1.2 -0.7 -0.8
Val
-0.0 -0.1 -0.3 -0.0 -0.2 -1.3 -0.3 -0.5 -0.3 0.1 0.2 -0.0 0.3 -0.8 -1.0
-6.2 -0.7 -5.9 0.2 -0.0 0.4 0.3 0.5 -0.0 0.1 0.4 0.5 0.8 0.7 1.0
0.7 1.0 0.9 0.7 0.7 0.8 0.8 0.8 0.2 0.4 0.3
Trp
-2.3 -0.4 -1.1 -2.3 -0.4 -4.2 -4.0 -3.2 -1.1 -1.1 -3.3 -3.2 -3.2 -3.2 -3.8
-6.2 -5.1 -5.9 -3.2 -0.5 -0.5 -1.1 -0.4 -1.1 1.0 -0.0 -1.1 -0.5 -0.4 -5.2
-4.2 -5.2 -1.1 -1.1 -0.0 -5.4 0.0 -5.1 -0.1 -0.6 -0.4
Tyr
-1.3 -0.9 -2.0 -0.4 -0.2 0.1 -0.9 -1.3 -1.3 -1.3 -2.0 -0.0 -0.9 1.1 -2.0
-6.2 -5.1 -5.9 -0.9 -2.0 0.3 -3.2 -2.0 -0.4 -0.4 -0.2 -0.0 -0.4 -2.0 -0.9
-2.0 -2.0 -5.4 -0.8 0.3 -0.3 -0.8 -0.2 -4.9 -0.8 -0.2
ConsensSequence: s s s s s s s s s s s s s s s s a A s s a s s s g a l l l l a a l a a l l l l l l
Positions with profile component > 1.0 for all amino acid types
Ala 1 2 18 19
Cys
Asp
Glu
Phe 21 23 24
Gly 0 1 2
His
Ile
Lys
Leu 21 22 24 25
Met 25
Asn 0
Pro
Gln
Arg
Ser -15 -14 -13 -12 -11 -10 -9 -8 -7 -6 -5 -4 -3 -1 0 1 2 3
Thr -8
Val
Trp 9
Tyr -2
Parameters for score calculation:
---------------------------------
TaxonCode: 20
Calculation of profile:
number of input sequences: 253
number of regions: 5
1: from : -15
to : -12
weight of region : 0.0
2: from : -11
to : -2
weight of region : 0.5
3: from : -1
to : 2
weight of region : 3.0
4: from : 3
to : 9
weight of region : 0.5
5: from : 10
to : 25
weight of region : 1.0
weight of profile : 0.6
omega-site will be searched in interval [12..40] from C-terminal
Function 0 = Combi_contents_win_penalty : contents and windows of DE in N-terminal region
Parameters:
ScFunc[0].from = -11
ScFunc[0].to = -1
ScFunc[0].PropertyName = DE sections
ScFunc[0].par1 = -4.00 penalty
ScFunc[0].par2 = 50.00 threshold: percentage of DE in N-terminal region
ScFunc[0].par4 = 3 winlen
ScFunc[0].par5 = 2 par5 DEs are max allowed per window if par2 is exceeded
ScFunc[0].wfunc = 1.00
Function 1 = Lower_Average : hydrophilicity of N-terminal region [-11..-1]
Parameters:
ScFunc[1].from = -11
ScFunc[1].to = -1
ScFunc[1].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[1].par1 = 5.44 mean hydrophobicity for N-terminal region was calculated
ScFunc[1].par2 = 1.53 dispersion was calculated
ScFunc[1].wfunc = 1.00
ScFunc[1].distr_type = F_GAUSS
Function 2 = PenaltyForBadProfile : penalty for bad Omega-Site
Parameters:
ScFunc[2].from = 0
ScFunc[2].to = 2
ScFunc[2].par1 = 0.10 threshold
ScFunc[2].par2 = -4.00 penalty
ScFunc[2].wfunc = 1.00
Function 3 = Sum : volume function
Parameters:
ScFunc[3].from = -1
ScFunc[3].to = 2
ScFunc[3].PropertyName = HAGECH94_V mean volume of residues
ScFunc[3].par1 = 386.60 mean volume was calculated
ScFunc[3].par2 = 44.15 dispersion was calculated
ScFunc[3].wfunc = 1.00
ScFunc[3].distr_type = F_GAUSS
Function 4 = Sum3 : volume function for three positions
Parameters:
ScFunc[4].from = 0 Position 1
ScFunc[4].to = 2 Position 2
ScFunc[4].PropertyName = HAGECH94_V mean volume of residues
ScFunc[4].par1 = 273.08 mean volume was calculated
ScFunc[4].par2 = 32.78 dispersion was calculated
ScFunc[4].par4 = 1 Position 3
ScFunc[4].wfunc = 1.00
ScFunc[4].distr_type = F_GAUSS
Function 5 = Sum2 : volume function for two positions
Parameters:
ScFunc[5].from = 0 Position 1
ScFunc[5].to = 1 Position 2
ScFunc[5].PropertyName = HAGECH94_V mean volume of residues
ScFunc[5].par1 = 185.07 mean volume was calculated
ScFunc[5].par2 = 31.22 dispersion was calculated
ScFunc[5].wfunc = 0.50
ScFunc[5].distr_type = F_GAUSS
Function 6 = Penalty_Mobility : penalty for more than one residue out of P, T, V, I
Parameters:
ScFunc[6].from = -1
ScFunc[6].to = 2
ScFunc[6].PropertyName = PTVI residues
ScFunc[6].par1 = -4.00 penalty
ScFunc[6].wfunc = 1.00
Function 7 = C_Position : penalty, if site is outside of interval[from..to] relative to C-terminal
Parameters:
ScFunc[7].from = 17
ScFunc[7].to = 32
ScFunc[7].par1 = 0.50 lambda (x < from)
ScFunc[7].par2 = 1.00 lambda (x > to)
ScFunc[7].wfunc = 4.00
ScFunc[7].distr_type = F_BOLTZMANN
Function 8 = Lower_Average : hydrophilicity of spacer region [3..8]
Parameters:
ScFunc[8].from = 3 (after omega-site)
ScFunc[8].to = 8
ScFunc[8].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[8].par1 = 6.91 mean hydrophobicity for spacer region was calculated
ScFunc[8].par2 = 2.38 dispersion was calculated
ScFunc[8].wfunc = 3.00
ScFunc[8].distr_type = F_GAUSS
Function 9 = Lower_Average : function for spacer volume (mean for positions 3..8)
Parameters:
ScFunc[9].from = 3 (after omega-site)
ScFunc[9].to = 8
ScFunc[9].PropertyName = HAGECH94_V mean volume of residues
ScFunc[9].par1 = 129.82 mean volume for spacer region was calculated
ScFunc[9].par2 = 16.22 dispersion was calculated
ScFunc[9].wfunc = 1.00
ScFunc[9].distr_type = F_GAUSS
Function 10 = Charged_AA_Penalty_Spacer : penalty for charged AA (DEKRH) in spacer (H=2/3)
Parameters:
ScFunc[10].from = 3
ScFunc[10].to = 10
ScFunc[10].par1 = -4.00 penalty
ScFunc[10].par4 = 3 threshold: max number of charged AA in spacer
ScFunc[10].wfunc = 1.00
Function 11 = Flexibility_Spacer : contents of PVI in spacer
Parameters:
ScFunc[11].from = 3
ScFunc[11].to = 8
ScFunc[11].par1 = -4.00 penalty
ScFunc[11].par4 = 4 par4 non-flexible residues are max allowed
ScFunc[11].wfunc = 1.00
Function 12 = PenaltyForBadProfile : penalty for bad profile in hydrophobic tail
Parameters:
ScFunc[12].from = 10
ScFunc[12].to = PROFILE_END
ScFunc[12].par1 = 0.20 threshold
ScFunc[12].par2 = -12.00 penalty
ScFunc[12].wfunc = 1.00
Function 13 = Higher_Average: function for hydrophobic region [10..C_end] (for at least the par4=8 last AAs)
Parameters:
ScFunc[13].from = 10
ScFunc[13].to = SEQUENCE_CEND
ScFunc[13].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[13].par1 = 12.00 mean hydrophobicity for at least the 8 last AAs was calculated
ScFunc[13].par2 = 1.72 dispersion was calculated
ScFunc[13].par4 = 8 minimal length of hydrophobic region
ScFunc[13].wfunc = 1.00
ScFunc[13].distr_type = F_GAUSS
Function 14 = Higher_Average : function for hydrophobic tail [26..C_end](for at least the par4=8 last AAs)
Parameters:
ScFunc[14].from = 26 (after profile-end)
ScFunc[14].to = SEQUENCE_CEND
ScFunc[14].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[14].par1 = 12.63 mean hydrophobicity for at least the 8 last AAs was calculated
ScFunc[14].par2 = 2.40 dispersion was calculated
ScFunc[14].par4 = 8 minimal length of tail for calculation of hydrophobicity parameters
ScFunc[14].wfunc = 1.00
ScFunc[14].distr_type = F_GAUSS
Function 15 = Sliding_Window : penalty for too short even hydrophobic section
Parameters:
ScFunc[15].from = 9
ScFunc[15].to = SEQUENCE_CEND
ScFunc[15].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[15].par1 = 9.00 threshold for windows containig Leu (min mean window hydrophobicity)
ScFunc[15].par2 = 6.00 threshold for windows without Leu
ScFunc[15].par3 = -12.00 penalty
ScFunc[15].par4 = 4 winlen
ScFunc[15].par5 = 5 min number of windows one after another
ScFunc[15].wfunc = 1.00
Function 16 = Post_Sliding_Window_Polar_Penalty : penalty for polar windows in the hydrophobic tail
Parameters:
ScFunc[16].from = 10
ScFunc[16].to = SEQUENCE_CEND
ScFunc[16].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[16].par1 = 1.50 minimum of mean hydrophobicity per window
ScFunc[16].par2 = -4.00 penalty
ScFunc[16].par3 = 0.50 threshold for extreme windows
ScFunc[16].par4 = 3 winlen
ScFunc[16].wfunc = 1.00
Function 17 = Post_Sliding_Window_SGC_Penalty : penalty for too long SGC - sections (len = par4) in hydrophobic tail
Parameters:
ScFunc[17].from = 9
ScFunc[17].to = SEQUENCE_CEND
ScFunc[17].PropertyName = NAKH920105 hydrophobicity scale
ScFunc[17].par1 = -12.00 penalty
ScFunc[17].par2 = 8.20 threshold for hydrophobicity of a window with len=(winlen+1)
ScFunc[17].par4 = 3 winlen
ScFunc[17].par5 = 2 are max allowed per window
ScFunc[17].wfunc = 1.00
Function 18 = LVI_contents : contents of Leu, Val, Ile in the hydrophobic tail
Parameters:
ScFunc[18].from = 10
ScFunc[18].to = SEQUENCE_CEND
ScFunc[18].par1 = 20.00 threshold
ScFunc[18].par2 = -12.00 penalty
ScFunc[18].wfunc = 1.00
Function 19 = Combi_FWHY_contents_2win : penalty if more than 40% WHFY and 2 disconnected windows (l=4) with > 2 aromats
Parameters:
ScFunc[19].from = 9
ScFunc[19].to = SEQUENCE_CEND
ScFunc[19].PropertyName = ZVEL_AROMA WHFY sections
ScFunc[19].par1 = 40.00 threshold: percentage of aromats in tail
ScFunc[19].par2 = -12.00 penalty
ScFunc[19].par4 = 4 winlen
ScFunc[19].par5 = 2 aromats are max allowed per window if par1 is exceeded
ScFunc[19].wfunc = 1.00
Function 20 = Sliding_Window : penalty for small (according to volume) windows in tail
Parameters:
ScFunc[20].from = 9
ScFunc[20].to = SEQUENCE_CEND
ScFunc[20].PropertyName = HAGECH94_V volume scale
ScFunc[20].par1 = 110.00 threshold (min mean window volume)
ScFunc[20].par2 = -12.00 penalty
ScFunc[20].par4 = 4 winlen
ScFunc[20].par5 = 5 min number of windows one after another
ScFunc[20].wfunc = 0.00
Function 21 = Sum2 : volume function for two positions
Parameters:
ScFunc[21].from = 1 Position 1
ScFunc[21].to = 2 Position 2
ScFunc[21].PropertyName = HAGECH94_V mean volume of residues
ScFunc[21].par1 = 178.17 mean volume was calculated
ScFunc[21].par2 = 26.73 dispersion was calculated
ScFunc[21].wfunc = 0.50
ScFunc[21].distr_type = F_GAUSS
Last modified: 11th August 2003