DOUTfinder results (result-link)
Domain ranking
Analysis based on a 80% non-redundant protein set composed of 20 sequences
| Significantly hitting domains | |||
|---|---|---|---|
| FN3 | SM00060 CDD|25286 | 4 sub 5 prot | Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands... |
| Subsignificant domain hits | |||
| Probable domain homologs | |||
| TIR D=42.04 | SM00255 CDD|22729 | 5 sub 5 prot | Toll - interleukin 1 - resistance; .... |
| Other domains appearing more than once | |||
| Domain (hitnumber): BH4 (2), ZnF_NFX (2), HTH_GNTR (2), fn3 (2), TIR (2), | |||
- » The best keywords found in psi-blast of the single input sequence are:
receptor (33), interleukin (18), il17 (6), il17rh1 (4), interleukin17 (3), sef (3), il17rb (3),
Details
- » Html tabular summary
of the identified domain hits (proteins, E-values, scores, positions, coverage). - » Simple text
rps-blast results for the non-redundant masked input set. - » Fasta formated
non-redundant masked sequence set. - » Fasta formated
input sequence set. - » Simple text
file containing the psi-blast output.
Visualization
Significant domain hits:
- » Significant- solid red boxes with E < 0.01
- » Supported by a significant hit in the protein set (orange)
- » Probable distant domain homolog with 5% expected false positives (blue)
- » Potential similarity with 10% expected false positives (cyan)
RPS-BLAST 2.2.13 [Nov-27-2005]
Database=PSSMs from the Pfam-A seed alignment database (Jan 2006) derived from NCBI
| Link2NCBI | |
|
| Found once DUF1053 | |
|
| Link2NCBI | |
|
| Found once HisKA | |
|
| Found once Exonuc_VII_L | |
|
| Appears 2 ZnF_NFX | |
|
| Found once PAW | |
|
| Link2NCBI | |
|
| Probable TIR | |
|
| Found once HisKA | |
|
| Found once UPF0081 | |
|
| Found once YqgFc | |
|
| Appears 2 ZnF_NFX | |
|
| Link2NCBI | |
|
| Found once Ku78 | |
|
| Found once Ku | |
|
| Found once DUF682 | |
|
| Link2NCBI | |
|
| Found once GreA_GreB_N | |
|
| Probable TIR | |
|
| Found once H4 | |
|
| Link2NCBI | |
|
| Found once PLDc | |
|
| Found once DUF1408 | |
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| Link2NCBI | |
|
| Found once WR1 | |
|
| Found once EGF_CA | |
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| Found once COQ7 | |
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| Found once MBD | |
|
| Link2NCBI | |
|
| Link2NCBI | |
|
| Found once eIF5C | |
|
| Found once PhBP | |
|
| Appears 2 HTH_GNTR | |
|
| Found once EspB | |
|
| Found once Adeno_E1B_19K | |
|
| Found once RRM | |
|
| Found once Retinin_C | |
|
| Link2NCBI | |
|
| Link2NCBI | |
|
| Link2NCBI | |
|
| Link2NCBI | |
|
| Found once UreE_N | |
|
| Found once TRASH | |
|
| Found once CTLH | |
|
| Found once Int_alpha | |
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| Found once PTPc_motif | |
|
| Found once Arch_fla_DE | |
|
| Link2NCBI | |
|
| Appears 2 fn3 | |
|
| Supported FN3 | |
|
| Found once Cbl_N2 | |
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| Found once Ubox | |
|
| Found once U-box | |
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| Found once DM5 | |
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| Link2NCBI | |
|
| Link2NCBI | |
|
| Found once HAT | |
|
| Appears 2 BH4 | |
|
| Found once HSA | |
|
| Appears 2 HTH_GNTR | |
|
| Found once UPF0016 | |
|
| Found once SH2 | |
|
| Supported FN3 | |
|
| Link2NCBI | |
|
| Supported FN3 | |
|
| Found once PPC | |
|
| Appears 2 BH4 | |
|
| Found once LU | |
|
| Found once DEP | |
|
| Found once Pox_TAA1 | |
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| Found once ARF | |
|
| Appears 2 fn3 | |
|
| Probable TIR | |
|
| Link2NCBI | |
|
| Significant FN3 | |
|
| Found once calpain_III | |
|
| Appears 2 TIR | |
|
| Probable TIR | |
|
| Found once Pribosyltran | |
|
| Link2NCBI | |
|
| Supported FN3 | |
|
| Found once BSD | |
|
| Appears 2 TIR | |
|
| Probable TIR | |
|