BLASTP 2.2.9 [May-01-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (160 letters) Database: nr95_Pfam18 2,959,546 sequences; 830,037,145 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value DUF387_SCPB_22-181_PF04079.5 155 2e-37 gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 28... 155 3e-37 gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HT... 152 2e-36 DUF387_SCPB_8-168_PF04079.5 147 1e-34 gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobac... 146 2e-34 gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbi... 145 4e-34 DUF387_SCPB_18-177_PF04079.5 145 4e-34 gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein pr... 144 7e-34 DUF387_Q5KXL1_19-179_PF04079.5 143 1e-33 gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clos... 142 2e-33 DUF387_Q67NF6_8-166_PF04079.5 142 3e-33 DUF387_SCPB_20-180_PF04079.5 141 5e-33 gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clos... 140 8e-33 DUF387_SCPB_8-168_PF04079.5 140 1e-32 gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceano... 140 1e-32 gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregatio... 138 3e-32 gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 28... 138 4e-32 gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [D... 138 5e-32 gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanth... 137 8e-32 DUF387_Q63TP4_8-167_PF04079.5 136 1e-31 gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanth... 136 2e-31 gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation ... 136 2e-31 gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptiona... 135 2e-31 gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanth... 135 2e-31 gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 28... 135 2e-31 gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00... 135 3e-31 DUF387_Q8XZW0_8-167_PF04079.5 135 3e-31 DUF387_Q82TY6_23-182_PF04079.5 135 3e-31 gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitros... 135 4e-31 DUF387_Q6SI35_7-166_PF04079.5 135 4e-31 gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptiona... 134 5e-31 gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [R... 134 7e-31 DUF387_Q7X2Z5_57-216_PF04079.5 134 7e-31 gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia sola... 134 7e-31 DUF387_Q88EG7_33-194_PF04079.5 134 7e-31 DUF387_Q7NSN3_12-171_PF04079.5 134 1e-30 gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptiona... 134 1e-30 gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 28... 134 1e-30 gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylell... 133 1e-30 gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR... 133 1e-30 DUF387_Q5ZVJ4_11-172_PF04079.5 133 1e-30 gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legio... 133 1e-30 gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 28... 132 2e-30 DUF387_Q9HZ43_11-172_PF04079.5 132 2e-30 gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 28... 132 2e-30 gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 28... 132 2e-30 gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 28... 132 3e-30 gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromo... 132 3e-30 DUF387_Q83CP9_8-169_PF04079.5 132 3e-30 DUF387_Q8PK59_20-181_PF04079.5 132 3e-30 gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncul... 132 3e-30 DUF387_Q7W9A9_10-171_PF04079.5 132 4e-30 gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 28... 131 4e-30 DUF387_Q885L8_11-172_PF04079.5 131 4e-30 gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptiona... 131 5e-30 gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 28... 131 7e-30 gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 28... 130 8e-30 gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 28... 130 8e-30 gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator... 130 1e-29 DUF387_Q7ZAN0_10-169_PF04079.5 130 2e-29 DUF387_Q5M621_6-167_PF04079.5 129 2e-29 gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pse... 129 2e-29 gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Strept... 129 2e-29 DUF387_SCPB_8-169_PF04079.5 129 2e-29 gi|70728992|ref|YP_258726.1| segregation and condensation protei... 129 2e-29 gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 28... 129 2e-29 gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR... 129 2e-29 gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptiona... 129 2e-29 DUF387_Q9PAP3_17-178_PF04079.5 129 2e-29 DUF387_SCPB_5-166_PF04079.5 129 2e-29 gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptiona... 129 2e-29 DUF387_Q73PC5_1-159_PF04079.5 129 3e-29 gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Lept... 129 3e-29 gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR... 129 3e-29 DUF387_Q605S2_5-166_PF04079.5 129 3e-29 DUF387_Q74C44_6-165_PF04079.5 129 3e-29 gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus lic... 128 4e-29 gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactob... 128 4e-29 DUF387_SCPB_6-167_PF04079.5 128 4e-29 gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Baci... 128 5e-29 gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Strep... 128 5e-29 gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptiona... 128 5e-29 gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] 128 6e-29 gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewan... 128 6e-29 gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation ... 127 6e-29 DUF387_Q5NZ85_11-170_PF04079.5 127 7e-29 gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Strep... 127 7e-29 gi|56478941|ref|YP_160530.1| putative transcriptional regulator,... 127 9e-29 DUF387_Q7ZAJ6_10-171_PF04079.5 127 9e-29 gi|42526386|ref|NP_971484.1| transcriptional regulator, putative... 127 1e-28 gi|53803499|ref|YP_114626.1| segregation and condensation protei... 126 2e-28 DUF387_SCPB_5-166_PF04079.5 126 2e-28 DUF387_Q5FKG0_6-167_PF04079.5 126 2e-28 DUF387_SCPB_5-166_PF04079.5 126 2e-28 gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Strep... 125 2e-28 gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptiona... 125 3e-28 gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 28... 125 3e-28 DUF387_SCPB_5-166_PF04079.5 125 3e-28 gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lacto... 125 3e-28 gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptiona... 125 3e-28 gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Para... 125 3e-28 gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus ... 125 4e-28 DUF387_SCPB_10-169_PF04079.5 125 4e-28 gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Str... 125 5e-28 DUF387_Q65HX2_10-169_PF04079.5 125 5e-28 gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 28... 124 6e-28 DUF387_SCPB_8-168_PF04079.5 124 6e-28 gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] 124 6e-28 gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptiona... 124 6e-28 DUF387_SCPB_5-166_PF04079.5 124 7e-28 DUF387_Q5SK60_9-166_PF04079.5 124 8e-28 gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 28... 124 8e-28 gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 28... 124 9e-28 gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00... 124 9e-28 gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Borde... 124 9e-28 gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus... 124 1e-27 DUF387_Q5WH04_9-169_PF04079.5 123 1e-27 gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator... 123 2e-27 gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xant... 123 2e-27 gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR... 123 2e-27 gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [The... 122 2e-27 DUF387_Q84FE4_81-236_PF04079.5 122 2e-27 DUF387_Q5QX76_8-169_PF04079.5 122 2e-27 DUF387_Q5TXY6_13-173_PF04079.5 122 2e-27 gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptiona... 122 2e-27 gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lacto... 122 3e-27 gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 28... 122 3e-27 DUF387_SCPB_5-166_PF04079.5 122 3e-27 gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 28... 122 3e-27 DUF387_SCPB_5-164_PF04079.5 122 4e-27 DUF387_Q6MER5_69-232_PF04079.5 121 4e-27 gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptiona... 121 4e-27 gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 28... 121 5e-27 gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptiona... 121 5e-27 gi|20807774|ref|NP_622945.1| predicted transcriptional regulator... 121 6e-27 gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptiona... 120 9e-27 gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 28... 120 2e-26 gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Aci... 120 2e-26 gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae... 119 2e-26 gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptiona... 119 3e-26 gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [... 118 4e-26 DUF387_Q6FDU6_20-179_PF04079.5 118 6e-26 gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptiona... 117 9e-26 DUF387_Q8KF54_10-171_PF04079.5 116 2e-25 gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] 115 3e-25 gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptiona... 115 4e-25 DUF387_SCPB_5-166_PF04079.5 114 7e-25 gi|28378542|ref|NP_785434.1| transcription regulator (putative) ... 114 7e-25 DUF387_Q5YY85_27-185_PF04079.5 114 9e-25 DUF387_Q9S231_28-186_PF04079.5 114 1e-24 gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 28... 114 1e-24 gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chloro... 114 1e-24 gi|73662567|ref|YP_301348.1| putative transcriptional regulator ... 113 1e-24 gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Strep... 113 2e-24 gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Myc... 113 2e-24 gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [E... 112 2e-24 DUF387_O05669_30-188_PF04079.5 112 4e-24 gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation ... 112 4e-24 DUF387_SCPB_5-157_PF04079.5 111 5e-24 gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 28... 111 5e-24 gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphy... 111 5e-24 gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [K... 111 6e-24 DUF387_SCPB_15-176_PF04079.5 110 1e-23 gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 28... 110 1e-23 gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 28... 108 3e-23 gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphy... 108 4e-23 DUF387_Q740D9_34-192_PF04079.5 108 4e-23 gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptiona... 108 5e-23 gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregatio... 108 6e-23 DUF387_Q6MLN0_104-265_PF04079.5 108 6e-23 gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 28... 108 6e-23 DUF387_Q98LC4_45-200_PF04079.5 108 6e-23 DUF387_O33209_30-188_PF04079.5 108 6e-23 gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycob... 107 1e-22 DUF387_Q89KZ6_34-189_PF04079.5 107 1e-22 gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 28... 107 1e-22 DUF387_SCPB_4-165_PF04079.5 107 1e-22 gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdello... 107 1e-22 gi|47459311|ref|YP_016173.1| predicted transcriptional regulator... 107 1e-22 gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycoba... 106 2e-22 gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Noca... 106 2e-22 gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Myco... 106 2e-22 DUF387_SCPB_106-268_PF04079.5 106 2e-22 gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 28... 106 2e-22 gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 28... 105 3e-22 gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptiona... 105 4e-22 DUF387_O83471_18-180_PF04079.5 105 5e-22 DUF387_Q6N5X0_36-191_PF04079.5 104 6e-22 gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 28... 104 8e-22 gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesor... 104 8e-22 gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 28... 104 9e-22 gi|71083666|ref|YP_266386.1| segregation and condensation protei... 103 1e-21 gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Trepon... 103 1e-21 gi|61102014|ref|ZP_00377468.1| segregation and condensation prot... 103 1e-21 DUF387_Q7ZAN2_15-173_PF04079.5 102 3e-21 gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycop... 102 3e-21 gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psy... 102 4e-21 gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Cory... 101 7e-21 gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifido... 100 8e-21 gi|57284636|gb|AAW36730.1| segregation and condensation protein ... 100 8e-21 DUF387_Q6NHE4_7-170_PF04079.5 100 1e-20 DUF387_Q8G4K8_52-216_PF04079.5 100 1e-20 gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Coryn... 100 1e-20 DUF387_Q5ZZQ3_4-166_PF04079.5 100 1e-20 DUF387_Q8YGS3_23-178_PF04079.5 100 2e-20 gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisser... 99 2e-20 DUF387_Q5LQJ0_23-178_PF04079.5 99 3e-20 gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycopl... 99 3e-20 gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Myc... 99 3e-20 DUF387_Q6AGG0_22-189_PF04079.5 98 5e-20 DUF387_SCPB_5-157_PF04079.5 98 6e-20 DUF387_Q9A6S9_11-166_PF04079.5 98 7e-20 gi|68263552|emb|CAI37040.1| segregation and condensation protein... 97 9e-20 gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinoc... 97 1e-19 gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leif... 97 1e-19 DUF387_Q8UEP8_40-195_PF04079.5 97 2e-19 gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [A... 96 2e-19 DUF387_SCPB_24-186_PF04079.5 96 2e-19 DUF387_Q9RTA4_13-171_PF04079.5 96 2e-19 gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 28... 96 2e-19 gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [F... 96 3e-19 gi|75675995|ref|YP_318416.1| chromosome segregation and condensa... 96 3e-19 gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureapla... 96 3e-19 DUF387_Q7P2S1_5-163_PF04079.5 96 4e-19 gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putat... 95 5e-19 DUF387_Q8NQK9_9-167_PF04079.5 95 5e-19 gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 28... 95 5e-19 gi|19552641|ref|NP_600643.1| predicted transcriptional regulator... 95 5e-19 gi|56679084|gb|AAV95750.1| segregation and condensation protein ... 95 6e-19 gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 28... 95 6e-19 gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulob... 95 7e-19 gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Brady... 94 8e-19 gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptiona... 94 8e-19 gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusob... 94 9e-19 gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR... 94 9e-19 gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrob... 94 1e-18 gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodo... 94 1e-18 gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptiona... 94 2e-18 DUF387_SCPB_23-185_PF04079.5 93 2e-18 gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 28... 92 3e-18 gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 28... 92 3e-18 gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptiona... 92 4e-18 gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 28... 92 6e-18 DUF387_Q92Q27_30-185_PF04079.5 91 8e-18 DUF387_Q7UE48_165-325_PF04079.5 91 9e-18 gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Myco... 90 2e-17 DUF387_SCPB_188-349_PF04079.5 90 2e-17 gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methan... 89 5e-17 DUF387_Q5FQ51_2-103_PF04079.5 88 7e-17 gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluco... 88 7e-17 DUF387_Q6MTL7_7-171_PF04079.5 88 8e-17 gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [M... 87 2e-16 DUF387_SCPB_7-168_PF04079.5 87 2e-16 gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycop... 86 2e-16 gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methan... 85 5e-16 gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sino... 85 7e-16 DUF387_Q8TI25_8-157_PF04079.5 84 2e-15 gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 28... 83 2e-15 DUF387_O28692_5-154_PF04079.5 81 7e-15 gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archae... 80 2e-14 gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 28... 79 3e-14 DUF387_Q981J7_40-198_PF04079.5 75 8e-13 gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. ... 74 9e-13 gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesor... 73 2e-12 DUF387_Q981I4_42-200_PF04079.5 70 1e-11 gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesor... 70 1e-11 gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [M... 70 1e-11 gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 28... 70 1e-11 gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 28... 70 2e-11 DUF387_Q9F5B4_43-202_PF04079.5 70 3e-11 gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] 69 4e-11 gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisse... 69 4e-11 gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyroco... 68 7e-11 gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (... 68 7e-11 DUF387_Q9V1Y8_8-160_PF04079.5 68 9e-11 gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [M... 67 2e-10 DUF387_O52287_40-199_PF04079.5 66 2e-10 DUF387_Q9K079_356-484_PF04079.5 66 3e-10 gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [M... 65 4e-10 gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeo... 65 4e-10 DUF387_Q7NJH4_8-156_PF04079.5 65 5e-10 gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyroco... 65 6e-10 gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Syn... 65 7e-10 DUF387_Q5N339_7-162_PF04079.5 65 7e-10 gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] 64 1e-09 gi|50365366|ref|YP_053791.1| chromosomal segregation/condensatio... 64 1e-09 DUF387_Q6F0R6_7-169_PF04079.5 64 1e-09 DUF387_Q7U6P4_8-162_PF04079.5 64 2e-09 gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptiona... 64 2e-09 gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] 63 2e-09 gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Syne... 63 2e-09 DUF387_Q98P19_35-194_PF04079.5 63 3e-09 DUF387_Q8YLY0_7-157_PF04079.5 62 5e-09 gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 28... 62 6e-09 DUF387_Q8KGW4_35-195_PF04079.5 62 6e-09 gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesor... 61 8e-09 DUF387_Q98A15_35-195_PF04079.5 61 8e-09 gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermo... 61 8e-09 gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 28... 61 9e-09 gi|57160221|dbj|BAD86151.1| predicted transcription regulator, Y... 61 1e-08 gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Meso... 61 1e-08 DUF387_P74610_5-159_PF04079.5 61 1e-08 DUF387_Q9WYW4_5-159_PF04079.5 61 1e-08 gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synec... 60 1e-08 gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator c... 60 2e-08 DUF387_Q5JDN0_8-160_PF04079.5 60 2e-08 DUF387_Q6LBD4_2-160_PF04079.5 60 2e-08 gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesor... 59 4e-08 gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Olig... 59 6e-08 DUF387_Q7UPG2_127-292_PF04079.5 58 9e-08 gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongat... 57 1e-07 gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 28... 57 1e-07 gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putat... 57 2e-07 gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation ... 57 2e-07 DUF387_Q8DKL3_12-162_PF04079.5 56 3e-07 DUF387_Q7V7Q5_20-168_PF04079.5 56 3e-07 gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Proc... 56 3e-07 DUF387_Q8KVW0_30-188_PF04079.5 54 9e-07 gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptiona... 54 2e-06 DUF387_Q7VC16_3-151_PF04079.5 53 2e-06 gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] 53 3e-06 gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Proch... 52 3e-06 DUF387_Q7V1G4_3-155_PF04079.5 52 5e-06 DUF387_Q9HKK2_10-161_PF04079.5 44 0.001 gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Ther... 44 0.001 gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma v... 41 0.009 DUF387_Q97B36_13-163_PF04079.5 41 0.013 gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptiona... 36 0.31 >DUF387_SCPB_22-181_PF04079.5 Length = 160 Score = 155 bits (393), Expect = 2e-37 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 1 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 61 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 121 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 160 >gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 281 [Moorella thermoacetica ATCC 39073] Length = 195 Score = 155 bits (392), Expect = 3e-37 Identities = 87/160 (54%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +E LLFVAG P+S++ LA L + P GL++ VAGGY++ Sbjct: 11 AALECLLFVAGGPVSVDSLAACLGVKPGDVDELAAELQELYAREERGLQIRAVAGGYQMC 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A Y E LL+ E P LSRAALETLAIIAYRQP+TR E+E IRGV DG + TL+ Sbjct: 71 TRPEFASYCEALLRPELP-ALSRAALETLAIIAYRQPVTRTEMEYIRGVKVDGVLNTLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EVGR++ PGRP LYGTT +FL++FGLK L +LPPL Sbjct: 130 RGLVQEVGRKEAPGRPILYGTTPKFLEFFGLKDLKELPPL 169 >gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HTH-type), YPUH B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] Length = 202 Score = 152 bits (384), Expect = 2e-36 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 22 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 81 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 82 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 141 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 142 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 181 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 147 bits (370), Expect = 1e-34 Identities = 86/161 (53%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E +S EQ+A++LEI GL++V+ A YR Sbjct: 1 SIIEGLLFVSGDEGISPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 61 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 121 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 161 >gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobacillus kaustophilus HTA426] Length = 217 Score = 146 bits (368), Expect = 2e-34 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 19 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 78 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 79 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 138 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 139 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 179 >gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbiobacterium thermophilum IAM 14863] Length = 219 Score = 145 bits (365), Expect = 4e-34 Identities = 87/159 (54%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 9 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 69 RPEAAEYVERLLQP-KSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP+ Sbjct: 128 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPPV 166 >DUF387_SCPB_18-177_PF04079.5 Length = 160 Score = 145 bits (365), Expect = 4e-34 Identities = 77/160 (48%), Positives = 113/160 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 1 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 61 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ +LP L Sbjct: 121 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIKELPSL 160 >gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein protein TIGR00281 [Bacillus cereus G9241] Length = 190 Score = 144 bits (363), Expect = 7e-34 Identities = 84/161 (52%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E + EQ+A++L I GL++V+ A YR Sbjct: 8 SIIEGLLFVSGDEGIYPEQIAKVLGIEGNEVINILEEMQKECEGAHRGLQIVQYAKVYRF 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 68 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 128 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 168 >DUF387_Q5KXL1_19-179_PF04079.5 Length = 161 Score = 143 bits (361), Expect = 1e-33 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 1 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 61 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 121 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 161 >gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clostridium tetani E88] Length = 189 Score = 142 bits (359), Expect = 2e-33 Identities = 74/154 (48%), Positives = 109/154 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 18 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 77 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 78 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ Sbjct: 138 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESI 171 >DUF387_Q67NF6_8-166_PF04079.5 Length = 159 Score = 142 bits (358), Expect = 3e-33 Identities = 87/159 (54%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 2 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 62 RPEAAEYVERLLQP-KSRGLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP+ Sbjct: 121 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPPV 159 >DUF387_SCPB_20-180_PF04079.5 Length = 161 Score = 141 bits (356), Expect = 5e-33 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 1 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 61 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 121 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 161 >gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 195 Score = 140 bits (354), Expect = 8e-33 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 20 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 79 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 80 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 139 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 140 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 180 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 140 bits (353), Expect = 1e-32 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 1 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 61 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 121 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 161 >gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceanobacillus iheyensis HTE831] Length = 192 Score = 140 bits (353), Expect = 1e-32 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 8 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 68 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 128 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 168 >gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregation and condensation protein ScpB [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 138 bits (348), Expect = 3e-32 Identities = 75/160 (46%), Positives = 109/160 (68%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+LF + EPL ++L L E+ G+ L EVAGG++++ Sbjct: 10 ARLEAVLFSSDEPLRFDRLQALFEVETTVLRQALQELMVEYAQDNRGVVLQEVAGGFQIR 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA ++ +L K+ R +LS+AA E+LAIIAYRQP+TRAEIE +RGV+S G ++ L+E Sbjct: 70 TRAEYAAWILKLNKS-RVTRLSKAATESLAIIAYRQPVTRAEIEYLRGVDSGGVVRMLME 128 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L++ VG++DVPGRP LYGT+ FL++FGLK L +LP L Sbjct: 129 KQLVKIVGKKDVPGRPLLYGTSRHFLEFFGLKDLSELPNL 168 >gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 281 [Clostridium thermocellum ATCC 27405] Length = 213 Score = 138 bits (348), Expect = 4e-32 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I E +LF +G+ +S+E+L+ + I G+ + E+ GY+L Sbjct: 23 GIFEGMLFASGDKVSIEKLSSITGIDKKTVKLVINNMIVKYNNDPSRGITIREINNGYQL 82 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +KPEY +Y+++L + ++ LS+AALETLAIIAY +PIT+A+IE+IRGVNSD AI LL Sbjct: 83 CSKPEYYDYIKQLFEPKQRSGLSQAALETLAIIAYNRPITKAKIEQIRGVNSDSAITKLL 142 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 E+ LI E GR D PG+P LY TTDEF FG KS DLP Sbjct: 143 EKNLIREAGRLDAPGKPVLYETTDEFFRSFGFKSDADLP 181 >gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [Desulfitobacterium hafniense DCB-2] Length = 196 Score = 138 bits (347), Expect = 5e-32 Identities = 80/160 (50%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EALLFVA +PL+ E+LAE+L++ G+ L+EV GY+L Sbjct: 9 AGVEALLFVADKPLTKERLAEILQLSSEDIAEILYDLKQRYAAPASGVTLIEVNEGYKLG 68 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE + Y+E L + LS AALE LAIIAY+QP+TR E++ IRGV SD ++ TL+E Sbjct: 69 TKPEMSAYIETLYH-QPAQGLSGAALEVLAIIAYKQPVTRGEVDFIRGVQSDRSLGTLVE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +GL+++VGR++ PGRP LYGTT++FL +FGLKSL++LP L Sbjct: 128 KGLVKDVGRKEGPGRPILYGTTEQFLIHFGLKSLEELPDL 167 >gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 424 Score = 137 bits (345), Expect = 8e-32 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREACAERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EERDWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >DUF387_Q63TP4_8-167_PF04079.5 Length = 160 Score = 136 bits (343), Expect = 1e-31 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 2 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 62 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 121 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 160 >gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 401 Score = 136 bits (342), Expect = 2e-31 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADLHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation and condensation protein ScpB [Ralstonia eutropha JMP134] Length = 311 Score = 136 bits (342), Expect = 2e-31 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 28 VLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALASGWRFQS 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE EY++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S IK L + Sbjct: 88 RPEMREYLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLED 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL++LD+LPPL Sbjct: 147 RSWIEVIGHRDVPGRPALYATTKAFLDDLGLRTLDELPPL 186 >gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia fungorum LB400] Length = 408 Score = 135 bits (341), Expect = 2e-31 Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L +L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGELRKLFADGVSADTVRTLLEDLRQDWSGRGVELVGLASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRSYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT +FLD GLK+LD+LPPL Sbjct: 128 RNWIEVIGHRDVPGRPALYATTRQFLDDLGLKALDELPPL 167 >gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 412 Score = 135 bits (341), Expect = 2e-31 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 21 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 80 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 81 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 139 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 140 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 181 >gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 281 [Nitrosomonas eutropha C71] Length = 216 Score = 135 bits (341), Expect = 2e-31 Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L EPL++ L +L E G+ELV VAGG+R Q+ Sbjct: 26 VVEAALLTTSEPLTINDLKKLFEGNIDKKMLHESLTILDEKWCNSGIELVLVAGGWRFQS 85 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 86 KPEMQIFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQVIKTLES 144 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+R++PG+P LY TT FLD L+SL+ LP L Sbjct: 145 RGWIETIGQREIPGKPYLYATTRHFLDDLNLQSLEQLPSL 184 >gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00281 [uncultured bacterium 105] Length = 225 Score = 135 bits (340), Expect = 3e-31 Identities = 77/157 (49%), Positives = 101/157 (64%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 8 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 67 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 68 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 128 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLP 164 >DUF387_Q8XZW0_8-167_PF04079.5 Length = 160 Score = 135 bits (340), Expect = 3e-31 Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 2 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV + IK + + Sbjct: 62 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 121 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 160 >DUF387_Q82TY6_23-182_PF04079.5 Length = 160 Score = 135 bits (340), Expect = 3e-31 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 2 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 62 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 121 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 160 >gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitrosomonas europaea ATCC 19718] Length = 220 Score = 135 bits (340), Expect = 4e-31 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 24 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 83 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 84 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 142 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 143 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 182 >DUF387_Q6SI35_7-166_PF04079.5 Length = 160 Score = 135 bits (340), Expect = 4e-31 Identities = 77/157 (49%), Positives = 101/157 (64%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 2 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 62 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 122 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLP 158 >gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia pseudomallei Pasteur] Length = 456 Score = 134 bits (338), Expect = 5e-31 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [Ralstonia metallidurans CH34] Length = 302 Score = 134 bits (337), Expect = 7e-31 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLRVGDLRRLFADDVGADTIRVLLEELRNDWQQRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE E+++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S +K L + Sbjct: 69 RPEMREFLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVVKKLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL+SLD+LPPL Sbjct: 128 RDWIEVIGHRDVPGRPALYATTKAFLDDLGLRSLDELPPL 167 >DUF387_Q7X2Z5_57-216_PF04079.5 Length = 160 Score = 134 bits (337), Expect = 7e-31 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 1 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 61 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 121 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 158 >gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 304 Score = 134 bits (337), Expect = 7e-31 Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 9 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV + IK + + Sbjct: 69 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 128 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 167 >DUF387_Q88EG7_33-194_PF04079.5 Length = 162 Score = 134 bits (337), Expect = 7e-31 Identities = 84/163 (51%), Positives = 105/163 (64%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 1 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + IKT Sbjct: 61 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 120 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 162 >DUF387_Q7NSN3_12-171_PF04079.5 Length = 160 Score = 134 bits (336), Expect = 1e-30 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 2 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 62 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 121 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 160 >gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia cepacia R18194] Length = 343 Score = 134 bits (336), Expect = 1e-30 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 281 [Burkholderia ambifaria AMMD] Length = 340 Score = 134 bits (336), Expect = 1e-30 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylella fastidiosa 9a5c] Length = 327 Score = 133 bits (335), Expect = 1e-30 Identities = 84/164 (51%), Positives = 98/164 (59%), Gaps = 8/164 (4%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 I+E L + +PL+L QL L IPP +ELVEVA G+ Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAER--SVELVEVASGF 75 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 R Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV + I Sbjct: 76 RFQLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 134 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TL ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 135 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR00281 [Pseudomonas putida KT2440] Length = 277 Score = 133 bits (335), Expect = 1e-30 Identities = 84/163 (51%), Positives = 105/163 (64%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 33 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 92 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + IKT Sbjct: 93 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 152 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 194 >DUF387_Q5ZVJ4_11-172_PF04079.5 Length = 162 Score = 133 bits (334), Expect = 1e-30 Identities = 77/162 (47%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 2 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA-IKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV + IKTL Sbjct: 62 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 121 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 162 >gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 196 Score = 133 bits (334), Expect = 1e-30 Identities = 77/162 (47%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 12 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA-IKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV + IKTL Sbjct: 72 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 131 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 172 >gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 281 [Burkholderia cenocepacia HI2424] Length = 345 Score = 132 bits (333), Expect = 2e-30 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >DUF387_Q9HZ43_11-172_PF04079.5 Length = 162 Score = 132 bits (333), Expect = 2e-30 Identities = 86/162 (53%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + P EL EVA GYRL Sbjct: 2 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV + I KTL Sbjct: 62 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 121 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 162 >gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 281 [Burkholderia vietnamiensis G4] Length = 340 Score = 132 bits (333), Expect = 2e-30 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 KP +++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHFLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 281 [Xylella fastidiosa Ann-1] Length = 254 Score = 132 bits (332), Expect = 2e-30 Identities = 84/164 (51%), Positives = 98/164 (59%), Gaps = 8/164 (4%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 I+E L + +PL+L QL L IPP +ELVEVA G+ Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCTER--SVELVEVASGF 75 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 R Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV + I Sbjct: 76 RFQLKADVHAWVSPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 134 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TL ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 135 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 281 [Methylobacillus flagellatus KT] Length = 184 Score = 132 bits (332), Expect = 3e-30 Identities = 80/160 (50%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L AGEPLSLE L E +ELV+VA G+R Q Sbjct: 13 VLEAVLLTAGEPLSLEMLLRPFEGRMERATLRMLLDELRQEWQGRSMELVQVASGWRFQA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLE 120 + + A ++ RL ERP + SRAALETLAIIAYRQP+TR +IEEIRGV + I + LE Sbjct: 73 RADLAPFIARL-NPERPMRYSRAALETLAIIAYRQPVTRGDIEEIRGVAVNPNIMRQFLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R I+ VG+RDVPGRP+LY TT FLD GL+SL +LPP+ Sbjct: 132 RNWIDIVGQRDVPGRPSLYATTKTFLDDLGLRSLSELPPI 171 >gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromobacterium violaceum ATCC 12472] Length = 210 Score = 132 bits (332), Expect = 3e-30 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 13 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 73 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 132 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 171 >DUF387_Q83CP9_8-169_PF04079.5 Length = 162 Score = 132 bits (332), Expect = 3e-30 Identities = 79/162 (48%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 2 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + ++P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 62 QARPDFSPWLQRLWE-KKPARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 121 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 162 >DUF387_Q8PK59_20-181_PF04079.5 Length = 162 Score = 132 bits (331), Expect = 3e-30 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 2 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 62 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 162 >gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 226 Score = 132 bits (331), Expect = 3e-30 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 57 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 116 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 117 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 176 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 177 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 214 >DUF387_Q7W9A9_10-171_PF04079.5 Length = 162 Score = 132 bits (331), Expect = 4e-30 Identities = 68/115 (59%), Positives = 89/115 (77%), Gaps = 2/115 (1%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 GLELV++A G+R Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+I Sbjct: 49 GLELVQLASGWRFQSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDI 107 Query: 107 RGVN-SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV S +K L +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 108 RGVTVSSQIVKVLEDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 162 >gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 281 [Shewanella denitrificans OS-217] Length = 206 Score = 131 bits (330), Expect = 4e-30 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L + G++LV+VA GYR Sbjct: 15 LIEASLFVLAKPMTIKALKETVLADFDVSRKRIQEVIDELQQDYQERGVQLVKVASGYRF 74 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE+IRGV S IK L Sbjct: 75 QTQELLSPYLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQIRGVAVSSHIIKNL 133 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG +DVPGRPALY TT++FL YFGL L DLP L Sbjct: 134 ADRHWIKSVGHKDVPGRPALYATTNDFLAYFGLTKLADLPQL 175 >DUF387_Q885L8_11-172_PF04079.5 Length = 162 Score = 131 bits (330), Expect = 4e-30 Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL E P EL EVA GYRL Sbjct: 2 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 62 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 121 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 162 >gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Microbulbifer degradans 2-40] Length = 352 Score = 131 bits (330), Expect = 5e-30 Identities = 82/162 (50%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE + AGE LS++++ L + P G ELVEVA G+R Sbjct: 11 IIEGAILAAGEALSIDRILSLFDENEQPEKDDIKQALLAIQEKNAGRGFELVEVASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + A +V RL E+P K SRA LETLA++AYRQPITR +IE++RGV S IKTL Sbjct: 71 QVVEDIAMWVNRLWD-EKPQKYSRALLETLALVAYRQPITRGDIEDVRGVAVSSHIIKTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER ++ VG RDVPGRPALY TT +FLDYF LKSLD+LP L Sbjct: 130 VEREWVKVVGHRDVPGRPALYATTRQFLDYFNLKSLDELPTL 171 >gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 281 [Azotobacter vinelandii AvOP] Length = 263 Score = 131 bits (329), Expect = 7e-30 Identities = 87/162 (53%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L AG PLSLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAWLLAAGRPLSLERLGELFEEGERPEPACLRDALAILARSCQGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + +A +V RL + ERP + SRA LETLA+IAYRQPI+R EIEE+RGV S I+TL Sbjct: 72 QVRERFAPWVGRLWE-ERPQRYSRALLETLALIAYRQPISRGEIEEVRGVAVSSNIIRTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG R+VPGRPAL+ TT FLD+F LKSLD+LPPL Sbjct: 131 QEREWIRVVGYREVPGRPALFATTRAFLDHFNLKSLDELPPL 172 >gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 281 [Pelobacter propionicus DSM 2379] Length = 206 Score = 130 bits (328), Expect = 8e-30 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A++E+++F A PLSL++L ELL E G +LV +AGG++ Sbjct: 5 AVVESVIFSADTPLSLDKLCELLPEYERGAIRDVLRDLVSLHEVRNGGFQLVNIAGGWQF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T +YV R +K + K S+++LETLAI+AYRQP+TRAEIE +RGV+ G ++TLL Sbjct: 65 RTPSSLQQYVVRNVKA-KSAKFSQSSLETLAIVAYRQPVTRAEIEYLRGVDCGGVLRTLL 123 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER LI +G++D+PGRP +YGT+ EFL+ FGLK L LP L Sbjct: 124 ERKLIRILGKKDIPGRPLIYGTSREFLEVFGLKDLKSLPTL 164 >gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 281 [Shewanella baltica OS155] Length = 198 Score = 130 bits (328), Expect = 8e-30 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS + L + L++ G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLDVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLPPL Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPPL 171 >gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 130 bits (327), Expect = 1e-29 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EPL+ +L + E G+EL++VA G+R QT Sbjct: 15 VLEAALLAAIEPLTPAELKRMFEHELSNETLRRALDELRAAWHGRGVELIQVADGWRFQT 74 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + E ++ RL K E+PP+ SRA LETLAIIAYRQP+TR +IE++RGV + IK L E Sbjct: 75 RAEMQPWLSRL-KNEKPPRYSRAVLETLAIIAYRQPVTRGDIEDVRGVAVNPNIIKALEE 133 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPAL+GTT FL GL++L +LPPL Sbjct: 134 RGWIEAIGHRDVPGRPALFGTTGHFLSDLGLRTLSELPPL 173 >DUF387_Q7ZAN0_10-169_PF04079.5 Length = 160 Score = 130 bits (326), Expect = 2e-29 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 1 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 61 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 121 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 158 >DUF387_Q5M621_6-167_PF04079.5 Length = 162 Score = 129 bits (325), Expect = 2e-29 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 1 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 61 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 121 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 159 >gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 129 bits (325), Expect = 2e-29 Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 172 >gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Streptococcus pneumoniae TIGR4] Length = 189 Score = 129 bits (325), Expect = 2e-29 Identities = 82/160 (51%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFVAGE + + QLAELL +PP L L+E +G YR Sbjct: 5 AKIEALLFVAGEDGIRVRQLAELLSLPPTGIQQSLGKLAQKYEKDPDSSLALIETSGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP++AE ++ K LSRAALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFAEILKEYSKAPINQSLSRAALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIKEDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >DUF387_SCPB_8-169_PF04079.5 Length = 162 Score = 129 bits (325), Expect = 2e-29 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 1 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 61 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 121 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 162 >gi|70728992|ref|YP_258726.1| segregation and condensation protein B [Pseudomonas fluorescens Pf-5] Length = 343 Score = 129 bits (325), Expect = 2e-29 Identities = 84/162 (51%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P SLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQSLERLFELFEEAERPDPAVFKKALALLGKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIREKFAPWVGRLWE-ERPQRYSRAMLETMALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 281 [Chromohalobacter salexigens DSM 3043] Length = 287 Score = 129 bits (325), Expect = 2e-29 Identities = 77/162 (47%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 + EA L AGEPL+ E+L L + P LELVE A G+++ Sbjct: 11 VCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQV 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + ++ ++ RL ERP + SRA LETLA+IAYRQP+TR +IEE+RGV+ S ++TL Sbjct: 71 RIRARFSPWISRLWD-ERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG I VG+RDVPGRP++Y TT FLD FGLK+LD LPP+ Sbjct: 130 TERGWIRVVGQRDVPGRPSVYATTRTFLDDFGLKTLDALPPM 171 >gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR00281 [Coxiella burnetii RSA 493] Length = 209 Score = 129 bits (325), Expect = 2e-29 Identities = 79/162 (48%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 9 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + ++P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 69 QARPDFSPWLQRLWE-KKPARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 128 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 169 >gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pseudomonas fluorescens PfO-1] Length = 337 Score = 129 bits (324), Expect = 2e-29 Identities = 83/163 (50%), Positives = 106/163 (65%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +++EA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 11 SLLEAFLLASGKPQSLERLYELFEEGERPEPPVFKKALTLLGKSCEGRAFELKEVASGYR 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KT 117 LQ + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV + I KT Sbjct: 71 LQIREKFAPWVGRLWE-ERPQRYSRALLETMALIAYRQPITRGEIEDVRGVAVNTNIVKT 129 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 130 LMEREWIRIVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >DUF387_Q9PAP3_17-178_PF04079.5 Length = 162 Score = 129 bits (324), Expect = 2e-29 Identities = 84/164 (51%), Positives = 98/164 (59%), Gaps = 8/164 (4%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 I+E L + +PL+L QL L IPP +ELVEVA G+ Sbjct: 2 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAER--SVELVEVASGF 59 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 R Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV + I Sbjct: 60 RFQLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIH 118 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TL ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 119 TLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 162 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 129 bits (324), Expect = 2e-29 Identities = 79/157 (50%), Positives = 95/157 (60%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL LA +L + P L L+E A YRL Sbjct: 3 IEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYRLV 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ LL Sbjct: 63 TKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKLLA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 123 FDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 159 >gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 200 Score = 129 bits (324), Expect = 2e-29 Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A ++ALL+VAG+ + EQL +LL++ P GL+L+E+ Y+ Sbjct: 6 AQLQALLYVAGDGGIKKEQLRDLLQLADPEIESLAKRLQEKLASDPDCGLQLLEINDEYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E ++ VE + +S++ALE LAI+AYRQPITR EI+EIRGVNS GA++TL Sbjct: 66 LTTSWEVSDLVEAYFNKDLTKNISQSALEILAIVAYRQPITRIEIDEIRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGL++ G +D PG P LY TTD FL YFG KSL DLP Sbjct: 126 VWRGLVKAQGVKDAPGHPKLYVTTDYFLQYFGYKSLADLP 165 >DUF387_Q73PC5_1-159_PF04079.5 Length = 159 Score = 129 bits (324), Expect = 3e-29 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 187 Score = 129 bits (323), Expect = 3e-29 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 10 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 70 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 130 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 167 >gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR00281 [Listeria monocytogenes str. 4b F2365] Length = 198 Score = 129 bits (323), Expect = 3e-29 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 8 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 68 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 128 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 169 >DUF387_Q605S2_5-166_PF04079.5 Length = 162 Score = 129 bits (323), Expect = 3e-29 Identities = 85/163 (52%), Positives = 102/163 (62%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L + P LEL +VA GYR Sbjct: 1 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 61 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 120 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 162 >DUF387_Q74C44_6-165_PF04079.5 Length = 160 Score = 129 bits (323), Expect = 3e-29 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 1 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 61 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 120 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 160 >gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus licheniformis ATCC 14580] Length = 197 Score = 128 bits (322), Expect = 4e-29 Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 4/162 (2%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPK-LSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 TK E+A Y+++L+ E P K LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L Sbjct: 70 STKKEFAVYLKKLI--EAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 128 VAKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 169 >gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactobacillus johnsonii NCC 533] Length = 196 Score = 128 bits (322), Expect = 4e-29 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 6 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >DUF387_SCPB_6-167_PF04079.5 Length = 162 Score = 128 bits (322), Expect = 4e-29 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 1 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 61 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 121 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 160 >gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Bacillus subtilis subsp. subtilis str. 168] Length = 197 Score = 128 bits (321), Expect = 5e-29 Identities = 81/162 (50%), Positives = 108/162 (66%), Gaps = 4/162 (2%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPK-LSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 TK ++A Y+++L+ E P K LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L Sbjct: 70 STKKDFAPYLKKLI--EVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 128 VAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 169 >gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Streptococcus pyogenes SSI-1] Length = 183 Score = 128 bits (321), Expect = 5e-29 Identities = 79/157 (50%), Positives = 95/157 (60%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL LA +L + P L L+E A YRL Sbjct: 7 IEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYRLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ LL Sbjct: 67 TKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKLLA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 127 FDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 163 >gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus gasseri] Length = 196 Score = 128 bits (321), Expect = 5e-29 Identities = 72/160 (45%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L + L +LLEI P GL+L+ + Y+ Sbjct: 6 AQLEALLYAAGDDGLETDNLLQLLEISPSALRELANHLKDRLKNDENSGLQLICINHTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSAECGDVISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVNGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] Length = 333 Score = 128 bits (321), Expect = 6e-29 Identities = 86/162 (53%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + P EL EVA GYRL Sbjct: 12 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV + I KTL Sbjct: 72 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 131 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 172 >gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewanella oneidensis MR-1] Length = 198 Score = 128 bits (321), Expect = 6e-29 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLEVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 171 >gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation and condensation protein ScpB [Dechloromonas aromatica RCB] Length = 178 Score = 127 bits (320), Expect = 6e-29 Identities = 76/160 (47%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EP++ + ++ + +EL+++A G+R +T Sbjct: 9 VLEAALLAAREPMTPSDMKKMFDEEFSSETLRKLLDQLREEWAERPVELIQLASGWRFRT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + EY Y+ERL ERPPK SRA LETLAIIAYRQP+TR +IEEIRGV + +KTL E Sbjct: 69 RAEYLPYIERL-NPERPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVAVNTNVVKTLEE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT +FLD GL+S+ +LPPL Sbjct: 128 RGWIDVVGHRDTPGRPALFATTKQFLDDLGLRSVSELPPL 167 >DUF387_Q5NZ85_11-170_PF04079.5 Length = 160 Score = 127 bits (320), Expect = 7e-29 Identities = 70/115 (60%), Positives = 87/115 (75%), Gaps = 2/115 (1%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 G ELV+VA G+R QT+PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+I Sbjct: 47 GAELVQVASGWRFQTRPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDI 105 Query: 107 RGVN-SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV S +KTL RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 106 RGVAVSPNVLKTLESRGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 160 >gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Streptococcus thermophilus LMG 18311] Length = 193 Score = 127 bits (320), Expect = 7e-29 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 6 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 66 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 126 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 164 >gi|56478941|ref|YP_160530.1| putative transcriptional regulator,helix-turn-helix type [Azoarcus sp. EbN1] Length = 197 Score = 127 bits (319), Expect = 9e-29 Identities = 70/115 (60%), Positives = 87/115 (75%), Gaps = 2/115 (1%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 G ELV+VA G+R QT+PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+I Sbjct: 57 GAELVQVASGWRFQTRPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDI 115 Query: 107 RGVN-SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV S +KTL RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 116 RGVAVSPNVLKTLESRGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 170 >DUF387_Q7ZAJ6_10-171_PF04079.5 Length = 162 Score = 127 bits (319), Expect = 9e-29 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 2 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 62 QTLEVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 121 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 162 >gi|42526386|ref|NP_971484.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 171 Score = 127 bits (319), Expect = 1e-28 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >gi|53803499|ref|YP_114626.1| segregation and condensation protein B [Methylococcus capsulatus str. Bath] Length = 201 Score = 126 bits (317), Expect = 2e-28 Identities = 85/163 (52%), Positives = 102/163 (62%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L + P LEL +VA GYR Sbjct: 5 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 65 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 123 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 124 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 166 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 126 bits (317), Expect = 2e-28 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 1 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 61 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 121 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 160 >DUF387_Q5FKG0_6-167_PF04079.5 Length = 162 Score = 126 bits (316), Expect = 2e-28 Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A +EALL+ AG+ + L +LLE+ G++++ +A Y+ Sbjct: 1 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADELEKKLSTDTNSGIQIIHIAHTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRGVNS GA++TL Sbjct: 61 LTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRGVNSSGALQTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 121 IWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 160 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 126 bits (316), Expect = 2e-28 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LFV GE + LE+LA LLE L ++EV + L Sbjct: 3 IEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFVLT 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L+ Sbjct: 63 TKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKLVA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 123 RQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 162 >gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Streptococcus agalactiae NEM316] Length = 194 Score = 125 bits (315), Expect = 2e-28 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 7 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 67 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 127 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 163 >gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pediococcus pentosaceus ATCC 25745] Length = 196 Score = 125 bits (315), Expect = 3e-28 Identities = 74/160 (46%), Positives = 97/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EALLFVAG E +S+E+L+ P L+L++ G Y+L Sbjct: 7 VEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE A +E+ LS AALE L+I+AYRQPITR EI++IRGV S ++ L+ Sbjct: 67 TKPELASILEKYFDRNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L++ VGR + PGRP YGTTDEFLDYFGL+ + DLP L Sbjct: 127 RNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDIKDLPKL 166 >gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 281 [Syntrophomonas wolfei str. Goettingen] Length = 171 Score = 125 bits (315), Expect = 3e-28 Identities = 76/161 (47%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRL 59 A +EA+LFV + +++L E+L+IP G L++VE+ GGY L Sbjct: 9 AAVEAVLFVRAGRVGMDELVEILDIPLLELKEILQEMILEYNNNIRGGLQIVELDGGYLL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+P Y++ + R+ K ++ +LS AAL+TLAI+AYRQPITR EIE+IRGV SD + TLL Sbjct: 69 CTRPAYSDILARMEKPQKK-RLSAAALDTLAIVAYRQPITRLEIEQIRGVKSDRIVNTLL 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+GLI+E G + V G+P LY TT+EFL FGL +L +LP L Sbjct: 128 EKGLIQEAGHKAVLGKPILYATTEEFLKVFGLTNLKELPDL 168 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 125 bits (314), Expect = 3e-28 Identities = 78/158 (49%), Positives = 99/158 (62%), Gaps = 2/158 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEALLFVAGE LSL QLA LL+IP L L+E + Y+L Sbjct: 3 IEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYKLV 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 63 TKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKLQA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 123 FDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELP 160 >gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lactobacillus acidophilus NCFM] Length = 197 Score = 125 bits (314), Expect = 3e-28 Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A +EALL+ AG+ + L +LLE+ G++++ +A Y+ Sbjct: 6 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADELEKKLSTDTNSGIQIIHIAHTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRGVNS GA++TL Sbjct: 66 LTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 126 IWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 165 >gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus casei ATCC 334] Length = 206 Score = 125 bits (314), Expect = 3e-28 Identities = 79/160 (49%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA+L+ AGE ++L +LA +LEI GL+L + A Y L Sbjct: 5 LEAILYTAGESGVTLGELAGILEISESAMRQQLDAYRQRLAADDQRGLQLQQFADRYYLL 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKP YA +++ LS+AALE LAIIAY+QPITR EI+EIRGV S GA+ TL Sbjct: 65 TKPAYAPAIKKYFAGPPAAGLSQAALEVLAIIAYQQPITRIEIDEIRGVQSSGALTTLAA 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+E GR++ PGRP LY TT FLDYFGL L DLPPL Sbjct: 125 RQLIKEAGRKEAPGRPMLYATTQFFLDYFGLNRLADLPPL 164 >gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Parachlamydia sp. UWE25] Length = 234 Score = 125 bits (314), Expect = 3e-28 Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 70 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 129 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 130 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 189 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L Sbjct: 190 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSEL 229 >gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus mitis] Length = 189 Score = 125 bits (314), Expect = 4e-28 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 5 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >DUF387_SCPB_10-169_PF04079.5 Length = 160 Score = 125 bits (313), Expect = 4e-28 Identities = 81/162 (50%), Positives = 108/162 (66%), Gaps = 4/162 (2%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPK-LSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 TK ++A Y+++L+ E P K LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L Sbjct: 61 STKKDFAPYLKKLI--EVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 119 VAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 160 >gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Streptococcus mutans UA159] Length = 198 Score = 125 bits (313), Expect = 5e-28 Identities = 78/158 (49%), Positives = 99/158 (62%), Gaps = 2/158 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEALLFVAGE LSL QLA LL+IP L L+E + Y+L Sbjct: 7 IEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 67 TKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKLQA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 127 FDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELP 164 >DUF387_Q65HX2_10-169_PF04079.5 Length = 160 Score = 125 bits (313), Expect = 5e-28 Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 4/162 (2%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPK-LSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 TK E+A Y+++L+ E P K LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L Sbjct: 61 STKKEFAVYLKKLI--EAPSKGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 119 VAKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 160 >gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 281 [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 124 bits (312), Expect = 6e-28 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E LLF+A PL++E++ + G+ L EVAGG++L+T Sbjct: 125 VVETLLFLAERPLTVEEMRAASGVDVERLEKALDKLSGHYREGPCGIVLHEVAGGWQLRT 184 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P+ +++ R LK +P +L+RAALETLAIIAYRQP+TR EIE+IRGV+ +K LLER Sbjct: 185 SPDNSDFARRFLKV-KPQRLTRAALETLAIIAYRQPVTRPEIEDIRGVDCGAVVKALLER 243 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L++ +G+++ PGRP LYGTT EFL++F LK L LP L Sbjct: 244 KLVKILGKKEEPGRPILYGTTREFLEFFALKDLASLPTL 282 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 124 bits (312), Expect = 6e-28 Identities = 71/114 (62%), Positives = 86/114 (75%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 GL + EVA +RL TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+ Sbjct: 48 GLRIEEVAHAFRLSTKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEV 107 Query: 107 RGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV S+ AI+TL R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 108 RGVKSEKAIQTLTSRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 161 >gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] Length = 197 Score = 124 bits (312), Expect = 6e-28 Identities = 71/114 (62%), Positives = 86/114 (75%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 GL + EVA +RL TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+ Sbjct: 55 GLRIEEVAHAFRLSTKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEV 114 Query: 107 RGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV S+ AI+TL R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 115 RGVKSEKAIQTLTSRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 168 >gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 199 Score = 124 bits (312), Expect = 6e-28 Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEALLFV+G E +S++ ++ + L++ E YRL Sbjct: 7 IEALLFVSGDEGISVKNMSIITGFDRSAIQGLLEELVLKYDTDLSSALQIRESDDVYRLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE V++ + LS+A LETL I+AY+QPITR EI+ IRGV S G ++ L Sbjct: 67 TKPELGGTVKQYFDSPVNATLSQAQLETLVIVAYKQPITRVEIDTIRGVQSSGTLQKLAL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ EVGR+D PGRP ++GTTDEFLDYFGLKS+++LPPL Sbjct: 127 RQLVHEVGRKDEPGRPIMFGTTDEFLDYFGLKSIEELPPL 166 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 124 bits (311), Expect = 7e-28 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 3 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 63 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 123 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 159 >DUF387_Q5SK60_9-166_PF04079.5 Length = 158 Score = 124 bits (311), Expect = 8e-28 Identities = 77/159 (48%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++ A+LF AG P++L++L L P G+ L VAGG+RL Sbjct: 2 LLLAVLFAAGRPVALKELRALGH-PEEAVLRALKALERDLEAGHLGVALERVAGGWRLVV 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P+ E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLER Sbjct: 61 HPKALEAVERVLKPS-PPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLER 119 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GL+ VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 120 GLVRVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 158 >gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 281 [Shewanella frigidimarina NCIMB 400] Length = 245 Score = 124 bits (311), Expect = 8e-28 Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +PLS++ + E L + G++LV++A GYR Sbjct: 12 LIEASLFVLAKPLSVKAIKETVLADFSVSRTRIQETLDELQQDYQERGVQLVKIASGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE IRGV S IK+L Sbjct: 72 QTQEILSPYLQPLWQ-EKSPKYSRATLETLAVIAYRQPVTRGDIEYIRGVAISSHIIKSL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPG+PALY TT FLDYF L L DLP L Sbjct: 131 ADRQWIKVVGHKEVPGKPALYATTPAFLDYFNLTKLADLPAL 172 >gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 281 [Solibacter usitatus Ellin6076] Length = 308 Score = 124 bits (311), Expect = 9e-28 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+++VA EPL+L Q+A L+ PP G+ + EVAGGY++ Sbjct: 75 AVLEAIVYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMA 134 Query: 61 TKPEYAEYVERLLKTERPP-KLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE+ E V +K+ +PP KLS ALETLA+IAY+QP T EI EIRGV G KTLL Sbjct: 135 TKPEHHEAVRNFVKSLKPPLKLSLPALETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLL 194 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R LI GR++V G+P LY TT EFL FGLK L +LP L Sbjct: 195 DRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSL 235 >gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00281 [Geobacter sulfurreducens PCA] Length = 195 Score = 124 bits (310), Expect = 9e-28 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 6 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 66 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 165 >gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Bordetella parapertussis 12822] Length = 364 Score = 124 bits (310), Expect = 9e-28 Identities = 68/115 (59%), Positives = 89/115 (77%), Gaps = 2/115 (1%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 GLELV++A G+R Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+I Sbjct: 58 GLELVQLASGWRFQSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDI 116 Query: 107 RGVN-SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV S +K L +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 117 RGVTVSSQIVKVLEDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 171 >gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 124 bits (310), Expect = 1e-27 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 9 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 69 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 129 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 169 >DUF387_Q5WH04_9-169_PF04079.5 Length = 161 Score = 123 bits (309), Expect = 1e-27 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 1 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 61 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 121 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 161 >gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator containing the HTH domain [Idiomarina loihiensis L2TR] Length = 190 Score = 123 bits (308), Expect = 2e-27 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 9 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L + E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 69 QTRAELGQRLAGLWQ-EKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 128 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 169 >gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xanthus] Length = 237 Score = 123 bits (308), Expect = 2e-27 Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 82 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 141 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L+ +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 142 DPHSGEYVRRYLRV-KPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 200 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 L++ +G+R+ GRP LYGT+ EFL++F LK L LP Sbjct: 201 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSALP 237 >gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR00281 [Enterococcus faecalis V583] Length = 201 Score = 123 bits (308), Expect = 2e-27 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LFV GE + LE+LA LLE L ++EV + L Sbjct: 7 IEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFVLT 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L+ Sbjct: 67 TKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKLVA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 127 RQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 166 >gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [Thermus thermophilus HB27] Length = 177 Score = 122 bits (307), Expect = 2e-27 Identities = 77/159 (48%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++ A+LF AG P++L++L L P G+ L VAGG+RL Sbjct: 10 LLLAVLFAAGRPVALKELRALGH-PEEAVLRALKALERDLEAGHLGVALERVAGGWRLVV 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P+ E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLER Sbjct: 69 HPKALEAVERVLKPS-PPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GL+ VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 128 GLVRVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 166 >DUF387_Q84FE4_81-236_PF04079.5 Length = 156 Score = 122 bits (307), Expect = 2e-27 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 2 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L+ +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 62 DPHSGEYVRRYLRV-KPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L++ +G+R+ GRP LYGT+ EFL++F LK L L Sbjct: 121 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSAL 156 >DUF387_Q5QX76_8-169_PF04079.5 Length = 162 Score = 122 bits (307), Expect = 2e-27 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 2 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L + E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 62 QTRAELGQRLAGLWQ-EKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 121 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 162 >DUF387_Q5TXY6_13-173_PF04079.5 Length = 161 Score = 122 bits (307), Expect = 2e-27 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 2 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 62 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 121 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 161 >gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Streptococcus suis 89/1591] Length = 189 Score = 122 bits (307), Expect = 2e-27 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A IE LLFVAGE L+L LAE+LE+ P GL ++E + Y+ Sbjct: 5 AEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSEKYMADKASGLAILESSNRYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK EYA + KT +SRA LETL+I+AY+QPITR E+++IRGVNS GAI L Sbjct: 65 LVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQPITRIEVDDIRGVNSSGAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ SL++LP Sbjct: 125 QAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSLEELP 164 >gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lactococcus lactis subsp. lactis Il1403] Length = 188 Score = 122 bits (306), Expect = 3e-27 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 65 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 166 >gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 281 [Shewanella amazonensis SB2B] Length = 198 Score = 122 bits (306), Expect = 3e-27 Identities = 76/162 (46%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E + P G+ LV+VAGGYR Sbjct: 12 LIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 QT+ Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV I KTL Sbjct: 72 QTQETLNPYLQTLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I VG ++VPGRPALY TT EFL YFGL +L LP L Sbjct: 131 SDRRWIRVVGHKEVPGRPALYATTSEFLAYFGLDNLASLPAL 172 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 122 bits (306), Expect = 3e-27 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 1 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 61 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 121 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 162 >gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 281 [Geobacter metallireducens GS-15] Length = 195 Score = 122 bits (305), Expect = 3e-27 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +I+E+LLFVA P++ ++L L E G+ LVEVA GY+ Sbjct: 6 SIVESLLFVADAPMTFDRLCSFLDEFDRGDIREALGALQEEYGQEGRGVVLVEVASGYQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T E A+Y+ RL KT RP K S++ALETLAIIAYRQP+TRAEIE +RGV+ G +KT+L Sbjct: 66 RTPVENADYLRRLTKT-RPVKFSQSALETLAIIAYRQPVTRAEIEYLRGVDCGGVLKTIL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G++D+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKKDIPGKPLIYGTTREFLELFSLKDLRSLPTL 165 >DUF387_SCPB_5-164_PF04079.5 Length = 160 Score = 122 bits (305), Expect = 4e-27 Identities = 73/158 (46%), Positives = 92/158 (58%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF AG+ + + LAE LE+ G+++V + T Sbjct: 3 IEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTN 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 63 DSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYN 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 123 LIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 160 >DUF387_Q6MER5_69-232_PF04079.5 Length = 164 Score = 121 bits (304), Expect = 4e-27 Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 2 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 61 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 62 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 121 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L Sbjct: 122 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSEL 161 >gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Cytophaga hutchinsonii] Length = 237 Score = 121 bits (304), Expect = 4e-27 Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 6/162 (3%) Query: 3 IEALLFVAGEPLSLEQLAELL------EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 IE+++F A +P+ +++ + + EIP +++++ GG Sbjct: 8 IESIIFCATDPVKPDEIRQCMSEMFEAEIPLDDILNAVDDLLSKYEDETFPFQILQIGGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 Y+ TKP Y + LK + +LS +ALET+AI+AY+QPIT+A+IE+IRGVN D A++ Sbjct: 68 YQFMTKPAYQSSLGIFLKQKSKKRLSTSALETMAIVAYKQPITKAQIEQIRGVNCDYAMQ 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LLE+ L+E G+ D GRP LYGT+ +FL+YFG+ ++ DLP Sbjct: 128 KLLEKELVEIQGKSDGVGRPILYGTSQKFLEYFGINNIKDLP 169 >gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 281 [Rhodoferax ferrireducens DSM 15236] Length = 230 Score = 121 bits (304), Expect = 5e-27 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E L +PL L + L + G+ELV VA G+R Q+ Sbjct: 9 ILETALICTSQPLPLRDMRVLFDDRLGLDTLKVLLRELQQDWAQRGVELVNVASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLE 120 +PE E+++RL E+PP+ +RA LETLAIIAYRQP+TR +IE++RGV + IK L + Sbjct: 69 RPEMREFLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDVRGVTVNSLLIKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RG IE +G R+ GRPAL+ TT FLD GL+SLD LP Sbjct: 128 RGWIEVIGHRETVGRPALFATTKHFLDDLGLESLDQLP 165 >gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rubrivivax gelatinosus PM1] Length = 261 Score = 121 bits (304), Expect = 5e-27 Identities = 73/160 (45%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L +L L + G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLRELRTLFDDQLGPDTLRVLLDELARDWEDRGVELVAVANGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA-IKTLLE 120 +PE EY++RL E+PP+ +RA LETLAIIAYRQP+TR +IE+IRGV + +K L + Sbjct: 69 RPELREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSQLLKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G R+ PGRPAL+ TT +FLD GL +L+ LP L Sbjct: 128 RGWIEAIGHRETPGRPALFATTRQFLDDLGLATLEQLPAL 167 >gi|20807774|ref|NP_622945.1| predicted transcriptional regulator containing the HTH domain [Thermoanaerobacter tengcongensis MB4] Length = 168 Score = 121 bits (304), Expect = 6e-27 Identities = 73/158 (46%), Positives = 92/158 (58%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF AG+ + + LAE LE+ G+++V + T Sbjct: 7 IEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTN 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 67 DSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYN 126 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 127 LIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 164 >gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Chloroflexus aurantiacus] Length = 209 Score = 120 bits (302), Expect = 9e-27 Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLFVA EP++L+QL +L++ G+ L + Sbjct: 40 LIEALLFVAAEPMTLDQLTRILDV--EAAEVVNAIDELSTIYAQRGIRLQRHNDHVMFVS 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 PE A + R L ++ +LS AALE LAIIAYRQPITRA+I+ IRGV+S A++ LL R Sbjct: 98 APEAAPTIRRFLGAQQNQRLSHAALENLAIIAYRQPITRAQIDAIRGVDSSAALRALLSR 157 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI E GR +V GRP LY TT FL FGL SLD+LPP+ Sbjct: 158 DLICEAGRLEVLGRPILYATTPTFLQQFGLTSLDELPPI 196 >gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 281 [Polaromonas sp. JS666] Length = 244 Score = 120 bits (300), Expect = 2e-26 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L ++ L G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLREMGVLFNGVLTADSLKLVLEDLQNDWAGRGVELVHVATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLE 120 +P+ EY++RL E+PP+ +RA LETLAIIAYRQP+TR ++E+IRGV + I K L + Sbjct: 69 RPQMREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDMEDIRGVTINSMILKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G R+ GRPALY TT +FLD G++SLD LP + Sbjct: 128 RGWVEVIGHRETVGRPALYATTRQFLDDLGVESLDQLPAM 167 >gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Acinetobacter sp. ADP1] Length = 196 Score = 120 bits (300), Expect = 2e-26 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + P+SL +L E + +EL+E A G+R Q + Sbjct: 22 IEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQVR 81 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLER 121 +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV+++ I + L E Sbjct: 82 SKYRNMIAQVWP-ERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFEW 140 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 141 NWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 179 >gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae str. PEST] Length = 188 Score = 119 bits (299), Expect = 2e-26 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 14 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 73 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 74 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 132 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 133 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 173 >gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactococcus lactis subsp. cremoris SK11] Length = 188 Score = 119 bits (298), Expect = 3e-26 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ATCELLLFVSGEAGLTLTELSSLTEMSKQACQQQIDYLKEKYHSDRESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK +++E ++ KT LS++ALE L+IIAY+QP+TR EI+++RGVNS G + TL Sbjct: 65 MATKEDFSEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRIEIDQLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TT+ FLDY G+ +L++LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTEFFLDYIGINNLEELPEI 166 >gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 118 bits (296), Expect = 4e-26 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP ++E LA++LE P G EL +AGG+R T+ Sbjct: 24 LEAVLMVVDEPATVEHLAKILERPKRQIADALRELADEYTGQGRGFELRLIAGGWRFYTR 83 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P+YA VER + + +L++AALETLA++AYRQP++R+ + +RGVN DG ++TLL+RG Sbjct: 84 PKYATAVERFVLDGQQARLTQAALETLAVVAYRQPVSRSRVSAVRGVNCDGVMRTLLQRG 143 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 144 LVEEAGAEPETG-AILYRTTNYFLERMGLRGLDELPEL 180 >DUF387_Q6FDU6_20-179_PF04079.5 Length = 160 Score = 118 bits (295), Expect = 6e-26 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + P+SL +L E + +EL+E A G+R Q + Sbjct: 3 IEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQVR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLER 121 +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV+++ I + L E Sbjct: 63 SKYRNMIAQVWP-ERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFEW 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 122 NWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 160 >gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Oenococcus oeni PSU-1] Length = 196 Score = 117 bits (293), Expect = 9e-26 Identities = 62/113 (54%), Positives = 82/113 (72%) Query: 48 LELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR 107 ++LVE YRL TK ++A +++ +T LS+A+LETL IIAY+QP+TR E+++IR Sbjct: 57 IKLVENDQVYRLVTKSKFAPLLKKYYQTPVANSLSKASLETLTIIAYKQPVTRIEVDKIR 116 Query: 108 GVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GVNS GAI L+ R LI+E GR+ GRP LY TT+ FLDYFGLK +DDLP L Sbjct: 117 GVNSSGAISRLVSRELIQESGRKAEVGRPLLYTTTNFFLDYFGLKKIDDLPEL 169 >DUF387_Q8KF54_10-171_PF04079.5 Length = 162 Score = 116 bits (290), Expect = 2e-25 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 3 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 63 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 123 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 162 >gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] Length = 258 Score = 115 bits (289), Expect = 3e-25 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 58 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 117 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 118 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 177 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 178 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 215 >gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodospirillum rubrum] Length = 239 Score = 115 bits (288), Expect = 4e-25 Identities = 76/158 (48%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLF A PLS+ LA L P G+ LVE G + +T Sbjct: 23 LIEALLFAAPTPLSVADLASRL---PAGADVAALLGALADHYRQRGVVLVESGGRWAFRT 79 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + L+T P +LSRAA+ETLAIIAY QP+TRA+IEEIRGV S G + LLE Sbjct: 80 AADLAGQLR--LETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLE 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I GRR GRP +GTT+ FLD+FGL S+DDLP Sbjct: 138 AGWIHPCGRRQTAGRPLTWGTTEGFLDHFGLGSVDDLP 175 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 114 bits (286), Expect = 7e-25 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 3 IEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRLA 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 63 TKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLVL 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 123 RQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 162 >gi|28378542|ref|NP_785434.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] Length = 199 Score = 114 bits (285), Expect = 7e-25 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 7 IEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRLA 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 67 TKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLVL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 127 RQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 166 >DUF387_Q5YY85_27-185_PF04079.5 Length = 159 Score = 114 bits (284), Expect = 9e-25 Identities = 72/158 (45%), Positives = 91/158 (57%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V P +EQLA L+ G++L V G+R T+ Sbjct: 3 LEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFYTR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL RG Sbjct: 63 TEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLARG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI E G D LY TT+ FL+ GL SL DLPPL Sbjct: 123 LIAEAG-VDPETNGTLYRTTELFLERIGLASLSDLPPL 159 >DUF387_Q9S231_28-186_PF04079.5 Length = 159 Score = 114 bits (284), Expect = 1e-24 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 3 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 63 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 123 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 159 >gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 281 [Chlorobium limicola DSM 245] Length = 221 Score = 114 bits (284), Expect = 1e-24 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E ++L + ++ EI + +AGGYR Sbjct: 30 IEAVIFASEEAVTLSSIRQITGAEISLSQLDLLISALNDGYAASGLTFRIHRIAGGYRFL 89 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P + E ++R+ + KLS + LE L++IAY+QP+T+ EI+++RG D A+ LLE Sbjct: 90 TEPRFCELLKRIQAPKVRRKLSNSILEVLSVIAYKQPVTKGEIQQLRGTAPDYAVDRLLE 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I GR D PGRP YGTTD+FLD FGL SL DLP L Sbjct: 150 RGFITVYGRADSPGRPLQYGTTDDFLDLFGLHSLRDLPKL 189 >gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chlorobium tepidum TLS] Length = 209 Score = 114 bits (284), Expect = 1e-24 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 12 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 72 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 132 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 171 >gi|73662567|ref|YP_301348.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 182 Score = 113 bits (283), Expect = 1e-24 Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EALL+ AG E L +QL E+LEI P GL + Y L Sbjct: 7 GILEALLYTAGDEGLDQQQLLEILEIEPTTLTELIEAYDSP------GLTIQHYGNTYVL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E ++Y+E+L++ + KLS+AA+E+L+IIAY QP++R++IE IRG+NSDGA+KTL+ Sbjct: 61 TTKKEASDYIEQLIEQKSKMKLSQAAMESLSIIAYNQPLSRSDIELIRGINSDGAVKTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E + + R TT+ FL+ FG++ LDDLP Sbjct: 121 ARGLVE--AKEEADSRSHQLYTTELFLNVFGIEHLDDLP 157 >gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 223 Score = 113 bits (282), Expect = 2e-24 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 30 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 89 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 90 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 149 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 150 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 186 >gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Mycoplasma pulmonis UAB CTIP] Length = 207 Score = 113 bits (282), Expect = 2e-24 Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG-YRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V G Y++ Sbjct: 16 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 75 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 76 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 135 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 136 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 176 >gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [Enterococcus faecium DO] Length = 189 Score = 112 bits (281), Expect = 2e-24 Identities = 76/158 (48%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 3 IEALLFVAGEP-LSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EALLF+ GE +S E+L+ LL + L + E Y L Sbjct: 7 LEALLFIVGEEGISNEELSGLLNLSEAEVTSLVKELKESYTQNSHSALHIFETESHYVLT 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E A ++R + LS+AA+ETLAIIAY+QPITRAEIE+IRGV GA++ L Sbjct: 67 TKKELAPLLKRYAQGTSN-TLSQAAVETLAIIAYKQPITRAEIEQIRGVQVSGAVQRLAA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LIEE GR + PGRP LYGTT FLDYFGLKSL++LP Sbjct: 126 HKLIEEKGRVEGPGRPILYGTTGYFLDYFGLKSLEELP 163 >DUF387_O05669_30-188_PF04079.5 Length = 159 Score = 112 bits (279), Expect = 4e-24 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 2 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 159 >gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation and condensation protein ScpB [Thermobifida fusca YX] Length = 193 Score = 112 bits (279), Expect = 4e-24 Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V +P+S +LA G +L EVA G+R T+ Sbjct: 17 LEAVLMVVDQPVSAYELARAFGTDVETVTRVLRETAREYTEQGRGFDLREVAEGWRFYTR 76 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PE AE VE L+ +L++AALETLA++AYRQP++R ++ IRGVN DG ++TL+ RG Sbjct: 77 PECAEAVEHFLRDGHEVRLTQAALETLAVVAYRQPVSRGKVSAIRGVNCDGVMRTLVLRG 136 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LIEE G +D LY TT FL+ GL+SLD+LP L Sbjct: 137 LIEEAG-QDPESGAILYRTTSYFLERLGLRSLDELPDL 173 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 111 bits (278), Expect = 5e-24 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 1 AILEALLYTSGDEGLEQKQIIDILDI------NLNQLEDLVSKYHSHGLTIQRYGSTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 55 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVP-GRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E +DV R TTD FL+ FG+++LD LP Sbjct: 115 ARGLVEA---KDVDHSRSHHLITTDLFLNVFGIENLDALP 151 >gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 281 [Prosthecochloris vibrioformis DSM 265] Length = 208 Score = 111 bits (278), Expect = 5e-24 Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAEL--LEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IE+++F + E ++L+ + ++ +E+ + +AGGYR+ Sbjct: 5 IESVIFASEEAITLQVIRQVTGVEMDSAALQEVVEAINREYLESGRPFSIHRIAGGYRML 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+A + +LL + +LSR+ LE L+++AY QP+TR EI++IRGV+ D AI L+E Sbjct: 65 SREEFAPLLRKLLAPKIRRRLSRSILEVLSVVAYHQPVTRGEIQQIRGVSPDYAIDRLME 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE GR D PGRP YGTT EFLD F L SL DLP L Sbjct: 125 RGFIEVQGRADTPGRPLQYGTTKEFLDLFHLSSLKDLPKL 164 >gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphylococcus epidermidis ATCC 12228] Length = 180 Score = 111 bits (278), Expect = 5e-24 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 5 AILEALLYTSGDEGLEQKQIIDILDI------NLNQLEDLVSKYHSHGLTIQRYGSTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 59 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVP-GRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E +DV R TTD FL+ FG+++LD LP Sbjct: 119 ARGLVEA---KDVDHSRSHHLITTDLFLNVFGIENLDALP 155 >gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [Kineococcus radiotolerans SRS30216] Length = 251 Score = 111 bits (277), Expect = 6e-24 Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L VA EP+ ++ LA P G EL EV GG+R+ Sbjct: 30 AALEAVLMVADEPVRVQALARATGEAPDEVDLLLRELAGEYAEQGRGFELREVGGGWRVY 89 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+A+ VE L + KL++AALETLAI+AYRQP++RA + +RGV+ DG ++TLL Sbjct: 90 SRAEHADVVEAFLLDGQTAKLTQAALETLAIVAYRQPVSRARVSAVRGVSVDGVMRTLLT 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ E G G LY TT+EFL GL L+DLPPL Sbjct: 150 RGLVCEAGVEATSG-ATLYRTTEEFLQRMGLDGLEDLPPL 188 >DUF387_SCPB_15-176_PF04079.5 Length = 162 Score = 110 bits (276), Expect = 1e-23 Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG-YRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V G Y++ Sbjct: 2 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 62 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 122 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 162 >gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 281 [Sphingopyxis alaskensis RB2256] Length = 197 Score = 110 bits (275), Expect = 1e-23 Identities = 71/157 (45%), Positives = 88/157 (56%), Gaps = 3/157 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + EPL QLA L G+ELVE G + QT Sbjct: 9 IEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTP 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + A + R + + P KLSRAA E LAI+AY +P++RAEIE IRGV S G + L+E Sbjct: 69 ADLAHLLRR--ERDDPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEA 126 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 I GRR+VPGRP +Y TTD FL +FGL S DLP Sbjct: 127 EWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRKDLP 163 >gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 281 [Frankia sp. CcI3] Length = 191 Score = 108 bits (271), Expect = 3e-23 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA +P+ + +LA L P G L GG+R Sbjct: 17 ALLEAVLMVAEKPVGVAELATGLGAPALEVERLLAQLAEQYVRDGRGFRLRHTGGGWRFY 76 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLA++AY+QP++R I +RGV++DG I+TL Sbjct: 77 TADECAPWVERFVLAGQSARLSQAALETLAVVAYQQPVSRGRISAVRGVSADGVIRTLTA 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGL+EEVG G LYGTTD FL+ GL+ LD+ Sbjct: 137 RGLVEEVGHDPETG-AILYGTTDYFLERMGLRGLDE 171 >gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 108 bits (270), Expect = 4e-23 Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE+LL+ AG E L +QL E+LEI GL + + Y L Sbjct: 5 GIIESLLYTAGDEGLDEKQLLEILEI------NQAKLSELISSYTSSGLIIQKFGSTYIL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +K E + Y+E+L++ + KLS+AA+ETL+IIAY QP++R++IE IRG+NSDGA++TL+ Sbjct: 59 TSKKEASPYIEQLIEQKSNMKLSQAAMETLSIIAYNQPLSRSDIELIRGINSDGAVRTLI 118 Query: 120 ERGLIEEVGRRDVP-GRPALYGTTDEFLDYFGLKSLDDLP 158 RGLIE +DV R TTD FL+ FG++ ++DLP Sbjct: 119 ARGLIEA---KDVENSRSHALQTTDLFLNVFGIEKIEDLP 155 >DUF387_Q740D9_34-192_PF04079.5 Length = 159 Score = 108 bits (270), Expect = 4e-23 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 1 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 61 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 121 RGLITEAGVDEDTG-ATTFATTDLFLERLGLTSLADLPDI 159 >gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Novosphingobium aromaticivorans DSM 12444] Length = 215 Score = 108 bits (269), Expect = 5e-23 Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 7/157 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA LF A +PL+ ++++ L G+ LVE G + QT Sbjct: 11 VEATLFAAEQPLTEQEISAHL----GGVDLKRTLQHLSDLYADRGVHLVERGGRWHFQTA 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLER 121 P+ A + R + E P +LSRAA E LAIIAY +P++RAEIE IRGV + G + LLE Sbjct: 67 PDLAHLLRR--EKEEPRRLSRAATEALAIIAYHEPVSRAEIEAIRGVQTAKGTLDVLLEA 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I GRR+VPGRP +Y TT +FL +FGL+S DLP Sbjct: 125 GWIRIAGRREVPGRPTIYATTPDFLSHFGLESRRDLP 161 >gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregation and condensation protein ScpB [Exiguobacterium sp. 255-15] Length = 190 Score = 108 bits (269), Expect = 6e-23 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 2 IIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IIE+LLFV G+ + L+++LEI L++VE G +++ Sbjct: 6 IIESLLFVVGDDGIDPRGLSQVLEISEAAAREQLHALQTTFEAEERVLQIVESGGVFKMV 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ E + YV+ + LSRAA+ETL IIAY+QP+TRA+IE IRGV ++ I TL Sbjct: 66 TRKEMSPYVQAYAGSLAEDSLSRAAMETLVIIAYKQPVTRADIEVIRGVKTERVIHTLSA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 +GLI+E GR GR LY TTD FLD+FGL S+ Sbjct: 126 KGLIDEAGRAKGVGRAKLYKTTDHFLDHFGLNSI 159 >DUF387_Q6MLN0_104-265_PF04079.5 Length = 162 Score = 108 bits (269), Expect = 6e-23 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE---IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L + I G+ L EV GGY Sbjct: 1 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 61 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 120 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 162 >gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 281 [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 108 bits (269), Expect = 6e-23 Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E + + ++LE + + +A GYR Sbjct: 12 IEAVIFASEEAVPASFICQVLESGVSAAEVDDAVNALNAFYTQSGRAFRIESIAEGYRFM 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T P A + ++L + KLS++ LE LA+IAY+QP++R++I+ IRGV+ D A+ LLE Sbjct: 72 TIPALAPLLRKMLAPKIRRKLSQSVLEVLAVIAYQQPVSRSDIQHIRGVSPDYAVNKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR G+P LYGTT EFLD+F L SL DLP L Sbjct: 132 RGLIDVRGRAASVGKPLLYGTTKEFLDFFHLSSLKDLPKL 171 >DUF387_Q98LC4_45-200_PF04079.5 Length = 156 Score = 108 bits (269), Expect = 6e-23 Identities = 70/156 (44%), Positives = 89/156 (57%), Gaps = 6/156 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 4 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 60 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERG 122 + A + R +R KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 61 DLAFLMSRDTVQQR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + GRR PGRP YGTT+ FLD+F L+ + DLP Sbjct: 119 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLP 154 >DUF387_O33209_30-188_PF04079.5 Length = 159 Score = 108 bits (269), Expect = 6e-23 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 2 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG D + TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVG-TDADTGAVTFATTELFLERLGLTSLSELPDI 159 >gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 235 Score = 107 bits (266), Expect = 1e-22 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 34 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 93 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 94 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 153 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 154 RGLITEAGVDEDTG-ATTFATTDLFLERLGLTSLADLPDI 192 >DUF387_Q89KZ6_34-189_PF04079.5 Length = 156 Score = 107 bits (266), Expect = 1e-22 Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV VA + +T Sbjct: 2 LLEALLFASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + A + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE Sbjct: 59 AGDLAWLMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 117 TGWIKPRGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 156 >gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides DSM 266] Length = 202 Score = 107 bits (266), Expect = 1e-22 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRLQ 60 +EAL+F + E ++L + ++ G + ++AGGYR Sbjct: 13 VEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRFF 72 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+ +++L+ + ++S++ LE LA+IAY+QP+T+AEI ++RGV+ D ++ LLE Sbjct: 73 SESEFDALLKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLLE 132 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE GR D PG+P YGTT EFLD F L SL DLP L Sbjct: 133 RGFIEVRGRADSPGKPLQYGTTKEFLDLFSLFSLRDLPKL 172 >DUF387_SCPB_4-165_PF04079.5 Length = 162 Score = 107 bits (266), Expect = 1e-22 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 2 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 62 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 122 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 162 >gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdellovibrio bacteriovorus HD100] Length = 488 Score = 107 bits (266), Expect = 1e-22 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE---IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L + I G+ L EV GGY Sbjct: 104 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 163 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 164 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 222 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 223 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 265 >gi|47459311|ref|YP_016173.1| predicted transcriptional regulator [Mycoplasma mobile 163K] Length = 192 Score = 107 bits (266), Expect = 1e-22 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 5 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 65 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 125 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 165 >gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycobacterium tuberculosis H37Rv] Length = 231 Score = 106 bits (265), Expect = 2e-22 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 31 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 90 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 91 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 150 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG D + TT+ FL+ GL SL +LP + Sbjct: 151 GLITEVG-TDADTGAVTFATTELFLERLGLTSLSELPDI 188 >gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Nocardia farcinica IFM 10152] Length = 225 Score = 106 bits (265), Expect = 2e-22 Identities = 68/154 (44%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V P +EQLA L+ G++L V G+R T+ Sbjct: 29 LEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFYTR 88 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL RG Sbjct: 89 TEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLARG 148 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 LI E G D LY TT+ FL+ GL SL D Sbjct: 149 LIAEAG-VDPETNGTLYRTTELFLERIGLASLSD 181 >gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Mycoplasma gallisepticum R] Length = 291 Score = 106 bits (265), Expect = 2e-22 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 106 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 165 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 166 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 225 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 226 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 268 >DUF387_SCPB_106-268_PF04079.5 Length = 163 Score = 106 bits (264), Expect = 2e-22 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 1 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 61 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 121 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 163 >gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides BS1] Length = 201 Score = 106 bits (264), Expect = 2e-22 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E +S + + ++L E+ + +AGG+R Sbjct: 12 IEAVIFASDEAVSAQIILQVLAEELSAEDIDAGVESLNASYASTGRSFRIARIAGGFRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T ++++L + KLS++ LE LA+IAY+QP TR EI+++RGV+ D AI LLE Sbjct: 72 TLGMLEPTLKKMLAPKIQRKLSQSVLEVLAVIAYQQPATRGEIQQVRGVSPDYAINKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR + PG+P +YGTT EFLD+F + SL DLP L Sbjct: 132 RGLIDVRGRAEKPGKPLIYGTTKEFLDFFNITSLKDLPKL 171 >gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 281 [Nocardioides sp. JS614] Length = 259 Score = 105 bits (262), Expect = 3e-22 Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EALL +A +P+ LA P G EL V GG+R T+ Sbjct: 45 LEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGGWRYYTR 104 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EYA VE + + +L++AALETLA++AY+QP++RA + IRGVN DG ++TLL RG Sbjct: 105 DEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRG 164 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT FL+ G+ SLDDLP L Sbjct: 165 LVEEAGHDHETG-ANLYRTTTYFLERIGVTSLDDLPEL 201 >gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Brevibacterium linens BL2] Length = 210 Score = 105 bits (262), Expect = 4e-22 Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELL----EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 A IEA+L ++ +S+ +LA L + G E+ VAGG Sbjct: 8 AGIEAVLMISDSAVSVTELATALGLDEDTVTDAIAELKADYDGGEDRRQRGFEIRLVAGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 +R+ ++ +Y E V+ L + + KLS+AALETLA+IAYRQPI+R I IRGV+ DG I+ Sbjct: 68 FRIFSRGDYHEIVKDFLTSGQSAKLSQAALETLAVIAYRQPISRPRIAAIRGVSVDGVIR 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TLL RGLI E G ++ LY TT +FLD G+ S+DDLP + Sbjct: 128 TLLLRGLIVEAG-KEATTSALLYTTTHQFLDALGMNSIDDLPEI 170 >DUF387_O83471_18-180_PF04079.5 Length = 163 Score = 105 bits (261), Expect = 5e-22 Identities = 73/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL---EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A++EA+LFV G LS LA L E GLEL G Sbjct: 1 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 61 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 121 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 163 >DUF387_Q6N5X0_36-191_PF04079.5 Length = 156 Score = 104 bits (260), Expect = 6e-22 Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV +A + +T Sbjct: 2 LLEALLFASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + A + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE Sbjct: 59 ASDLAWLMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G ++ GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 117 TGWVKPRGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 156 >gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 281 [Frankia sp. EAN1pec] Length = 214 Score = 104 bits (259), Expect = 8e-22 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA P+ + + A L+IP G L V G+RL Sbjct: 64 ALVEAVLTVAENPVGVAEFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLY 123 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLAI+AY+QP++R I +RGV++DG I+TL Sbjct: 124 TADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPVSRGRISAVRGVSADGVIRTLTA 183 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 R L+EE G G LY TTD FL+ GL+ Sbjct: 184 RNLVEECGHDHESG-AILYRTTDYFLERMGLR 214 >gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesorhizobium loti MAFF303099] Length = 254 Score = 104 bits (259), Expect = 8e-22 Identities = 70/156 (44%), Positives = 89/156 (57%), Gaps = 6/156 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 48 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 104 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERG 122 + A + R +R KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 105 DLAFLMSRDTVQQR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 162 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + GRR PGRP YGTT+ FLD+F L+ + DLP Sbjct: 163 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLP 198 >gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 281 [Psychrobacter cryohalolentis K5] Length = 186 Score = 104 bits (259), Expect = 9e-22 Identities = 54/114 (47%), Positives = 77/114 (67%), Gaps = 2/114 (1%) Query: 48 LELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR 107 L L A GYRLQ ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +R Sbjct: 64 LSLHHTASGYRLQIADSHSALIQNVFP-QRQERLSQALLETLSVIAYKQPVTRSDIEHVR 122 Query: 108 GVN-SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GV S ++ L ++G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 123 GVTLSSNILRQLFDKGWIEENGYKDTLGRPALLHTTSQFLDAFGLSHLDELPPM 176 >gi|71083666|ref|YP_266386.1| segregation and condensation protein b [Candidatus Pelagibacter ubique HTCC1062] Length = 233 Score = 103 bits (258), Expect = 1e-21 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 6/157 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EPL ++ + + G+ LV ++ + +T Sbjct: 26 VEAIIFAAAEPLDIDTIESKIS---KKIDVLKSLQKLQKEYSLRGINLVCISNKWSFRTS 82 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + E+ KLSRAA+ETLAII Y QP+TRAEIEEIRGV ++ L+E Sbjct: 83 ENLSNLMSQEKTVEK--KLSRAAVETLAIIVYHQPVTRAEIEEIRGVAFGTNTLEILMEL 140 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 ++ GR+DVPG+P YGTTD+FL +F L+ L DLP Sbjct: 141 NWVKPQGRKDVPGKPIQYGTTDDFLSHFSLQKLSDLP 177 >gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Treponema pallidum subsp. pallidum str. Nichols] Length = 192 Score = 103 bits (258), Expect = 1e-21 Identities = 73/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL---EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A++EA+LFV G LS LA L E GLEL G Sbjct: 18 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 77 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 78 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 137 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 138 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 180 >gi|61102014|ref|ZP_00377468.1| segregation and condensation protein B [Erythrobacter litoralis HTCC2594] Length = 230 Score = 103 bits (258), Expect = 1e-21 Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA LF + +P+ +E LA L G+ LVE + + QT Sbjct: 12 IEATLFASEDPMGVESLATHLG-DAAASDVRDALKNLAKHYEERGVHLVERSRRWHFQTA 70 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLER 121 P+ A + R + E+ +LSRAA E LAI+AY +P++RAEIE IRGV + G + L+E Sbjct: 71 PDLAHLLRR--EKEQVRRLSRAATEVLAIVAYHEPVSRAEIEAIRGVQTAKGTLDVLMEA 128 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR+VPGRP +Y TT EFL +FGL S DLP L Sbjct: 129 GWVRAAGRREVPGRPVIYATTPEFLQHFGLASRKDLPGL 167 >DUF387_Q7ZAN2_15-173_PF04079.5 Length = 159 Score = 102 bits (255), Expect = 3e-21 Identities = 65/158 (41%), Positives = 86/158 (54%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IE++L V P+ LA + + G +L E GG+RL T+ Sbjct: 3 IESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLYTR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL RG Sbjct: 63 PDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQMRG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ EV G Y TT FL+ G+ SLD LP L Sbjct: 123 LVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 159 >gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 195 Score = 102 bits (254), Expect = 3e-21 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 7/162 (4%) Query: 2 IIEALLFVAGE----PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 IIEA+L++ GE L L+ +L +I G+ +VE + Sbjct: 5 IIEAILYLQGEKGVSSLQLQNCLKLAKIS--QARKLLKDFAIEFNRQKRGILVVEFDDIF 62 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG-VNSDGAIK 116 + T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IRG +NSD + Sbjct: 63 KFVTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVG 122 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +LL +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 123 SLLAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLP 164 >gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psychrobacter arcticum 273-4] Length = 183 Score = 102 bits (253), Expect = 4e-21 Identities = 54/114 (47%), Positives = 77/114 (67%), Gaps = 2/114 (1%) Query: 48 LELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR 107 L L A GYRLQ ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +R Sbjct: 64 LNLHHTASGYRLQIADSHSALIQSVFP-QRQERLSQALLETLSVIAYKQPVTRSDIEHVR 122 Query: 108 GVN-SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GV S ++ L ++G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 123 GVTLSSTILRQLFDKGWIEENGHKDTLGRPALLHTTPKFLDAFGLSHLDELPPM 176 >gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 187 Score = 101 bits (251), Expect = 7e-21 Identities = 65/158 (41%), Positives = 86/158 (54%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IE++L V P+ LA + + G +L E GG+RL T+ Sbjct: 17 IESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLYTR 76 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL RG Sbjct: 77 PDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQMRG 136 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ EV G Y TT FL+ G+ SLD LP L Sbjct: 137 LVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 173 >gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifidobacterium longum NCC2705] Length = 238 Score = 100 bits (250), Expect = 8e-21 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI------PPXXXXXXXXXXXXXXXXXXXGLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 52 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 111 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 112 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 171 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G D R AL T++ FLD GLKSLD+LP L Sbjct: 172 IRSLTVRGLIKEDG-VDPESRAALLVTSEFFLDQMGLKSLDELPSL 216 >gi|57284636|gb|AAW36730.1| segregation and condensation protein B [Staphylococcus aureus subsp. aureus COL] Length = 180 Score = 100 bits (250), Expect = 8e-21 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L++ GL + Y L Sbjct: 5 GILESLLFTAGDEGLDEKQLLEILDMS------KDQLVELIENYSSHGLMIQRFGMTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E A Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 59 TTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 119 AKGLVE--AKVVNEQRSQQLITTDLFLNVFGISNIEDLP 155 >DUF387_Q6NHE4_7-170_PF04079.5 Length = 164 Score = 100 bits (249), Expect = 1e-20 Identities = 69/162 (42%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IE++L V +P S+ LA E P G+E+ E G+RL T Sbjct: 3 IESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLYTV 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL RG Sbjct: 63 KRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQLRG 122 Query: 123 LIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 123 LIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 164 >DUF387_Q8G4K8_52-216_PF04079.5 Length = 165 Score = 100 bits (249), Expect = 1e-20 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI------PPXXXXXXXXXXXXXXXXXXXGLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 1 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 60 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 61 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 120 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G D R AL T++ FLD GLKSLD+LP L Sbjct: 121 IRSLTVRGLIKEDG-VDPESRAALLVTSEFFLDQMGLKSLDELPSL 165 >gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Corynebacterium diphtheriae NCTC 13129] Length = 184 Score = 100 bits (248), Expect = 1e-20 Identities = 69/162 (42%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IE++L V +P S+ LA E P G+E+ E G+RL T Sbjct: 9 IESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLYTV 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL RG Sbjct: 69 KRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQLRG 128 Query: 123 LIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 129 LIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 170 >DUF387_Q5ZZQ3_4-166_PF04079.5 Length = 163 Score = 100 bits (248), Expect = 1e-20 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 7/162 (4%) Query: 2 IIEALLFVAGE----PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 IIEA+L++ GE L L+ +L +I G+ +VE + Sbjct: 2 IIEAILYLQGEKGVSSLQLQNCLKLAKIS--QARKLLKDFAIEFNRQKRGILVVEFDDIF 59 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG-VNSDGAIK 116 + T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IRG +NSD + Sbjct: 60 KFVTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVG 119 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +LL +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 120 SLLAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLP 161 >DUF387_Q8YGS3_23-178_PF04079.5 Length = 156 Score = 100 bits (248), Expect = 2e-20 Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 2 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 P+ A + R +T + KLSRA +E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 59 APDLAFIMNR--ETVQQRKLSRATMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 117 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 156 >gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisseria meningitidis Z2491] Length = 200 Score = 99.4 bits (246), Expect = 2e-20 Identities = 69/163 (42%), Positives = 89/163 (54%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 9 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 68 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV S I+T Sbjct: 69 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNVIQT 125 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L +RG IE +G RD G+PAL+ TT FL L L++LPPL Sbjct: 126 LQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLDGLEELPPL 168 >DUF387_Q5LQJ0_23-178_PF04079.5 Length = 156 Score = 99.4 bits (246), Expect = 3e-20 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 2 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 59 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 117 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 156 >gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 208 Score = 99.4 bits (246), Expect = 3e-20 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 3/161 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 24 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 83 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 84 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 143 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 144 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELP 184 >gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Mycoplasma synoviae 53] Length = 185 Score = 99.0 bits (245), Expect = 3e-20 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEALL++ G E L+LEQ+ E+ + GL++V ++L Sbjct: 1 MIEALLYIQGDEGLNLEQVKEVFNLNNTHEAKKIMQDFQKDFNNLDRGLKVVVFDEIFKL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ YV +L+ T +L+ AA+E IIAY+ PITR +I +IRG SD + LL Sbjct: 61 ATRESVRAYVSKLVTTTGKQRLTSAAIEVAGIIAYKGPITRGQISKIRGAVSDHIVNNLL 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++G+I EVG G P LY + +F D+F + S DLP + Sbjct: 121 KKGIIHEVGVSHTQGNPVLYEVSSQFYDHFKISSKQDLPKM 161 >DUF387_Q6AGG0_22-189_PF04079.5 Length = 168 Score = 98.2 bits (243), Expect = 5e-20 Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIP---------PXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + P G EL EV Sbjct: 3 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 62 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 63 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 122 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 123 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 168 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 98.2 bits (243), Expect = 6e-20 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L+I GL + Y L Sbjct: 1 GILESLLFTAGDEGLDEKQLLEILDIS------KDQLVELIENYSSHGLIIQRFGTTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 55 TTKKEASMYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 115 AKGLVE--AKVVNEQRSQQLITTDLFLNVFGISNIEDLP 151 >DUF387_Q9A6S9_11-166_PF04079.5 Length = 156 Score = 97.8 bits (242), Expect = 7e-20 Identities = 75/157 (47%), Positives = 93/157 (59%), Gaps = 6/157 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 3 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 60 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 GLI GRR PGRP +GTTD F++++GL +L DLP Sbjct: 118 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLP 154 >gi|68263552|emb|CAI37040.1| segregation and condensation protein B [Corynebacterium jeikeium K411] Length = 198 Score = 97.4 bits (241), Expect = 9e-20 Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 8/163 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLE-----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +E+LL V+ E ++ +LA +L +P G EL E G + Sbjct: 21 VESLLLVSDEAVTPTELARVLSNEEKAVPEAEVARTLHEIAAEYEARGNGFELREHEGAF 80 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL T+ ++ VE L +LSRAALETLA++AYRQP+TR+++ +RGVN DG ++T Sbjct: 81 RLYTRRANSDVVEAKLLDGTQQRLSRAALETLAVVAYRQPVTRSQVAAVRGVNCDGVMRT 140 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L RGLI E G + G LY TT+ FL+ G++SL++LP L Sbjct: 141 LSLRGLIAETGEQ---GGAHLYSTTELFLEQIGIESLEELPDL 180 >gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 182 Score = 97.1 bits (240), Expect = 1e-19 Identities = 72/148 (48%), Positives = 87/148 (58%), Gaps = 1/148 (0%) Query: 13 PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVERL 72 P+ L +LA +L + G+ L VAGGYRL P A ++ L Sbjct: 25 PVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAPL 84 Query: 73 LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDV 132 L P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 85 LAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRGA-SAGTVLTLQERELVKVVGRSDA 143 Query: 133 PGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 144 VGQPLLYGTTEKFLLEFGLGSLQDLPPL 171 >gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 204 Score = 97.1 bits (240), Expect = 1e-19 Identities = 65/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIP---------PXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + P G EL EV Sbjct: 24 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 83 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 84 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 143 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 144 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 189 >DUF387_Q8UEP8_40-195_PF04079.5 Length = 156 Score = 96.7 bits (239), Expect = 2e-19 Identities = 76/160 (47%), Positives = 95/160 (59%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 2 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + +V R + E P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 59 AGDLS-FVIRTEEKE-PKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 117 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 156 >gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [Arthrobacter sp. FB24] Length = 229 Score = 96.3 bits (238), Expect = 2e-19 Identities = 51/114 (44%), Positives = 77/114 (67%), Gaps = 1/114 (0%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 G EL +AGG+R+ ++ ++A+ V + + +L++AALETLA+IAYRQP++RA + I Sbjct: 98 GFELRNIAGGWRIYSRTDFADVVGGFVLEGQTARLTQAALETLAVIAYRQPVSRARVSAI 157 Query: 107 RGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGVN D ++TL++RGLIE+ G D LY TT FL+ G+ S+ +LP L Sbjct: 158 RGVNVDSVVRTLMQRGLIEDSG-TDPESGAILYRTTSYFLERMGIGSVAELPQL 210 >DUF387_SCPB_24-186_PF04079.5 Length = 163 Score = 96.3 bits (238), Expect = 2e-19 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 3/161 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 1 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 61 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 121 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELP 161 >DUF387_Q9RTA4_13-171_PF04079.5 Length = 159 Score = 96.3 bits (238), Expect = 2e-19 Identities = 72/148 (48%), Positives = 87/148 (58%), Gaps = 1/148 (0%) Query: 13 PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVERL 72 P+ L +LA +L + G+ L VAGGYRL P A ++ L Sbjct: 13 PVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAPL 72 Query: 73 LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDV 132 L P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 73 LAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRGA-SAGTVLTLQERELVKVVGRSDA 131 Query: 133 PGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 132 VGQPLLYGTTEKFLLEFGLGSLQDLPPL 159 >gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 248 Score = 96.3 bits (238), Expect = 2e-19 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 35 FASSEPLDQAALAKRM---PDGVDIKVALAQLQADYASRGVNLVRVANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAE+EEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETKRLSRAAIEMLAIIAYHQPVTRAELEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFTLESLGDLPGL 183 >gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 181 Score = 95.9 bits (237), Expect = 3e-19 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLEL-VEVAGGYRLQT 61 +EA++F+ G+ ++ LA+ +I +E+ E+ L T Sbjct: 7 VEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDTGINIEIDSEIV---YLST 63 Query: 62 KPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L E Sbjct: 64 NPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLEE 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 R + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 124 RKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELP 161 >gi|75675995|ref|YP_318416.1| chromosome segregation and condensation protein ScpB [Nitrobacter winogradskyi Nb-255] Length = 248 Score = 95.9 bits (237), Expect = 3e-19 Identities = 65/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 35 FASSEPLDQSALAKRM---PDGVDIKSALAQLQADYASRGVNLVRIANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L++L DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFSLENLGDLPGL 183 >gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 364 Score = 95.9 bits (237), Expect = 3e-19 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 188 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 247 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 248 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 307 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 308 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 349 >DUF387_Q7P2S1_5-163_PF04079.5 Length = 159 Score = 95.5 bits (236), Expect = 4e-19 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLEL-VEVAGGYRLQT 61 +EA++F+ G+ ++ LA+ +I +E+ E+ L T Sbjct: 3 VEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDTGINIEIDSEIV---YLST 59 Query: 62 KPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L E Sbjct: 60 NPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLEE 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 R + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 120 RKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELP 157 >gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 540 Score = 95.1 bits (235), Expect = 5e-19 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 1/159 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L +A PL+ +LA L ++ G+ + +VAGG R+ T Sbjct: 167 IEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRMMT 226 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L++ Sbjct: 227 RSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLMQL 286 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 287 DLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 325 >DUF387_Q8NQK9_9-167_PF04079.5 Length = 159 Score = 95.1 bits (235), Expect = 5e-19 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +E++L V P+S LA +L I G++L E A G+R T+ Sbjct: 3 MESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYYTR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL RG Sbjct: 63 PENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQLRG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 123 LVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 159 >gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 281 [Jannaschia sp. CCS1] Length = 228 Score = 95.1 bits (235), Expect = 5e-19 Identities = 68/160 (42%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + +P+SL AE+ P G+++ +V + +T Sbjct: 24 MVEALLFASADPVSL---AEMEARMPHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + R +R KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I L+E Sbjct: 81 AADLGFLMARDQVEQR--KLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+ RR PGRP Y T FLD+FGL+S DLP L Sbjct: 139 LDWIKFGRRRMTPGRPVTYVVTQLFLDHFGLESARDLPGL 178 >gi|19552641|ref|NP_600643.1| predicted transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 192 Score = 95.1 bits (235), Expect = 5e-19 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +E++L V P+S LA +L I G++L E A G+R T+ Sbjct: 22 MESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYYTR 81 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL RG Sbjct: 82 PENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQLRG 141 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 142 LVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 178 >gi|56679084|gb|AAV95750.1| segregation and condensation protein B [Silicibacter pomeroyi DSS-3] Length = 218 Score = 94.7 bits (234), Expect = 6e-19 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 24 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 81 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 139 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 178 >gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 226 Score = 94.7 bits (234), Expect = 6e-19 Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+++ L + P G+ +V+V + ++T Sbjct: 32 MVEAVLFASAEPVTVRDLIARM---PHGCRPSEALEHLRKRYEGRGVRVVQVGEAWAMRT 88 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 89 APDLGYLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I R+ PGRP + T FLD+FGL+S DLP L Sbjct: 147 MEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESARDLPGL 186 >gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulobacter crescentus CB15] Length = 221 Score = 94.7 bits (234), Expect = 7e-19 Identities = 75/157 (47%), Positives = 93/157 (59%), Gaps = 6/157 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 13 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 69 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 70 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 GLI GRR PGRP +GTTD F++++GL +L DLP Sbjct: 128 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLP 164 >gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 94.4 bits (233), Expect = 8e-19 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 41 FASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRTAGDLAW 97 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 98 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 155 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 156 RGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 189 >gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Mycoplasma genitalium G-37] Length = 207 Score = 94.4 bits (233), Expect = 8e-19 Identities = 51/114 (44%), Positives = 69/114 (60%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 G+EL + + L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EI Sbjct: 72 GVELKKFGNSFSLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEI 131 Query: 107 RGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV+S + L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 132 RGVDSFQIVDDLIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 185 >gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 181 Score = 94.4 bits (233), Expect = 9e-19 Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLEL-VEVAGGYRLQT 61 +E+++F+ G+ ++ LA+ +I LE+ E+ L T Sbjct: 7 VESIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDTGINLEVDSEIV---YLST 63 Query: 62 KPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P Y E + + E +P KLS A++ETL+IIAY+QPIT++EIE IRGV+ D + L E Sbjct: 64 NPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPITKSEIESIRGVSVDRIVSNLEE 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 R + G+++ + LY TD+FL Y G+KS+ +LP Sbjct: 124 RKFVRNCGKQESGRKANLYEVTDKFLSYLGIKSITELP 161 >gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR00281 [Brucella abortus biovar 1 str. 9-941] Length = 241 Score = 94.4 bits (233), Expect = 9e-19 Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 35 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 91 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 P+ A + R +T + KLSRAA+E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 92 APDLAFIMNR--ETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 150 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 189 >gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrobacterium tumefaciens str. C58] Length = 250 Score = 93.6 bits (231), Expect = 1e-18 Identities = 76/160 (47%), Positives = 95/160 (59%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 41 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + +V R + E P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 98 AGDLS-FVIRTEEKE-PKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 155 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 156 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 195 >gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodopseudomonas palustris CGA009] Length = 432 Score = 93.6 bits (231), Expect = 1e-18 Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 43 FASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRTASDLAW 99 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE G ++ Sbjct: 100 LMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLETGWVKP 157 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 158 RGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 191 >gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptional regulator containing the HTH domain [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 93.6 bits (231), Expect = 2e-18 Identities = 52/80 (65%), Positives = 59/80 (73%), Gaps = 1/80 (1%) Query: 80 KLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRDVPGRPAL 138 KLSRAA+ETLAIIAY QP+TRAEIEE+RGV S G + L G I GRR PGRP Sbjct: 8 KLSRAAVETLAIIAYHQPVTRAEIEEVRGVALSKGTMDILFSAGWIRPKGRRRTPGRPLT 67 Query: 139 YGTTDEFLDYFGLKSLDDLP 158 + TTD FLD+FGL+SL DLP Sbjct: 68 WATTDGFLDHFGLESLSDLP 87 >DUF387_SCPB_23-185_PF04079.5 Length = 163 Score = 92.8 bits (229), Expect = 2e-18 Identities = 51/114 (44%), Positives = 69/114 (60%) Query: 47 GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI 106 G+EL + + L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EI Sbjct: 50 GVELKKFGNSFSLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEI 109 Query: 107 RGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGV+S + L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 110 RGVDSFQIVDDLIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 163 >gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 281 [Rubrobacter xylanophilus DSM 9941] Length = 185 Score = 92.4 bits (228), Expect = 3e-18 Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + P+S LA + G+ L EVAGG++L T Sbjct: 6 LVEAVLFSSARPVSRGALASCTGLSAGEVERALAELAGRYSPERSGVVLREVAGGFQLAT 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P + VER RP LS AA E LA + Y P+TR I +RGVNSD ++TL+ER Sbjct: 66 NPACSAAVERFRGEARPAPLSAAAHEVLACVLYLGPLTRGAISRVRGVNSDAVVRTLIER 125 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GL+ E G + G+ AL T++FL G S +D PPL Sbjct: 126 GLLAEKGSSE-EGQAALLDVTEDFLVAAGASSREDFPPL 163 >gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 281 [Deinococcus geothermalis DSM 11300] Length = 176 Score = 92.4 bits (228), Expect = 3e-18 Identities = 72/148 (48%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 13 PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVERL 72 P++ ++A LL +P G E+ VAGGYRL P A ++ L Sbjct: 19 PVTRREVAALLGLPEEAAARALDAFAGVLRDAGLGFEVEAVAGGYRLVVPPALAAHLAPL 78 Query: 73 LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDV 132 L P LS AALE LA+IAYRQPITRAEIE +RG S G + TL ER L++ VGR D Sbjct: 79 LAPPPLPPLSAAALEVLAVIAYRQPITRAEIEAMRG-GSAGTVVTLQERELVKVVGRSDA 137 Query: 133 PGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT+ FL FGL SL+DLPPL Sbjct: 138 VGQPLLYGTTERFLLEFGLTSLEDLPPL 165 >gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodobacter sphaeroides 2.4.1] Length = 211 Score = 92.0 bits (227), Expect = 4e-18 Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 6/158 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+++ +L L P G++L V + +T Sbjct: 21 MVEAILFASADPVTVAELQARL---PHGCDPAEALTHLRRRYEGRGVQLARVGDAWAFRT 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + +T KLSRAA+ETLAI+AY QP+TRAEIEEIRGV S G I LLE Sbjct: 78 AADLGFLMRK--ETVEQKKLSRAAIETLAIVAYHQPVTRAEIEEIRGVAVSRGTIDQLLE 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 I RR PGRP + T+ FLD+FGL+S DLP Sbjct: 136 LEWIRFGRRRMTPGRPVTFVVTESFLDHFGLESARDLP 173 >gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 281 [Paracoccus denitrificans PD1222] Length = 221 Score = 91.7 bits (226), Expect = 6e-18 Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+S ++A L P G++L V + +T Sbjct: 25 MVEAILFASAEPMSQREIAARL---PAGCDVGEAVQALRARYEGRGVQLARVGDAWAFRT 81 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + ++ + R +LSRAA ETLAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 82 AADLGFLMQESVVESR--RLSRAATETLAIIAYHQPVTRAEIEEIRGVAVSRGTLDQLIE 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + RR PGRP + T+ FLD+FGL+S DLP L Sbjct: 140 LDWVRIGRRRQTPGRPVTFVVTEAFLDHFGLESARDLPGL 179 >DUF387_Q92Q27_30-185_PF04079.5 Length = 156 Score = 91.3 bits (225), Expect = 8e-18 Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 2 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + R KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 59 AADLSFVVNTDEQEVR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G + GRR PGRP +GTT +FLD+FGL+ + DLP Sbjct: 117 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLP 154 >DUF387_Q7UE48_165-325_PF04079.5 Length = 161 Score = 90.9 bits (224), Expect = 9e-18 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IEA+L +A PL+ +LA L ++ G+ + +VAGG R+ Sbjct: 1 ARIEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRM 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L+ Sbjct: 61 MTRSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 121 QLDLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 161 >gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 209 Score = 90.1 bits (222), Expect = 2e-17 Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEV--AGG 56 AIIE LLF+ G+ +SL + +L+ + P ++ Sbjct: 7 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 67 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 127 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 171 >DUF387_SCPB_188-349_PF04079.5 Length = 162 Score = 89.7 bits (221), Expect = 2e-17 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 1 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 61 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 121 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 162 >gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methanosarcina mazei Go1] Length = 371 Score = 88.6 bits (218), Expect = 5e-17 Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P GLE++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLMKITGKPKKNVSSAVQELMGAYSSRMSGLEILDLGDRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E L++ P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 66 KPEYSE----LMREVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKKND 151 >DUF387_Q5FQ51_2-103_PF04079.5 Length = 102 Score = 88.2 bits (217), Expect = 7e-17 Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ A+ LLE LI GR++VPG Sbjct: 17 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 76 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 77 RPVLWGTTASFLESFGLPDLRGLP 100 >gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluconobacter oxydans 621H] Length = 129 Score = 87.8 bits (216), Expect = 7e-17 Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ A+ LLE LI GR++VPG Sbjct: 18 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 77 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 78 RPVLWGTTASFLESFGLPDLRGLP 101 >DUF387_Q6MTL7_7-171_PF04079.5 Length = 165 Score = 87.8 bits (216), Expect = 8e-17 Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEV--AGG 56 AIIE LLF+ G+ +SL + +L+ + P ++ Sbjct: 1 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 61 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 121 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 165 >gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 244 Score = 86.7 bits (213), Expect = 2e-16 Identities = 69/156 (44%), Positives = 89/156 (57%), Gaps = 6/156 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EAL+F + P+S + L++ L P G+ LV V + +T Sbjct: 38 EALVFASAAPVSFKSLSDRL---PDGVDIRAIMEELKGDYERRGVNLVRVEDSWAFRTAG 94 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERG 122 + A + R ++ KLSRAALE L++IAY QP+TRAEIEEIRGV S G + LLE G Sbjct: 95 DLAFLMSRDAVQQK--KLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETG 152 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + GRR PGRP YGTT EFLD+FGL+ L DLP Sbjct: 153 WVRMRGRRRAPGRPVTYGTTLEFLDHFGLEELRDLP 188 >DUF387_SCPB_7-168_PF04079.5 Length = 162 Score = 86.7 bits (213), Expect = 2e-16 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 1 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 61 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 121 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 162 >gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycoplasma penetrans HF-2] Length = 197 Score = 86.3 bits (212), Expect = 2e-16 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 7 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 66 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 67 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 126 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 127 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 168 >gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methanosarcina acetivorans C2A] Length = 374 Score = 85.1 bits (209), Expect = 5e-16 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 9 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E L++ P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 69 KPEYSE----LMREVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 125 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 154 >gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 239 Score = 84.7 bits (208), Expect = 7e-16 Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 31 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + R KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 88 AADLSFVVNTDEQEVR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 145 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G + GRR PGRP +GTT +FLD+FGL+ + DLP Sbjct: 146 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLP 183 >DUF387_Q8TI25_8-157_PF04079.5 Length = 150 Score = 83.6 bits (205), Expect = 2e-15 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 2 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E L++ P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 62 KPEYSE----LMREVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 118 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 147 >gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 281 [Methanosarcina barkeri str. fusaro] Length = 371 Score = 83.2 bits (204), Expect = 2e-15 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLTKITGKPKKTVLSAIQKLTEIYSSRGSGIEILDLEERYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY++ L++ P +LS L TL++IAY QP+ ++++ ++RG + IK L+ER Sbjct: 66 KPEYSD----LMREVAPKELSTPKLRTLSMIAYHQPLLQSDLIDMRGSGAYDHIKDLVER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKRND 151 >DUF387_O28692_5-154_PF04079.5 Length = 150 Score = 81.3 bits (199), Expect = 7e-15 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 2 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER E R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 62 KPQYAEYVERFTVRE----FDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL+ + + GR + TT+EF YFGL S + Sbjct: 118 GLV----KAEKKGRSTILTTTEEFATYFGLDSAE 147 >gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archaeoglobus fulgidus DSM 4304] Length = 166 Score = 80.1 bits (196), Expect = 2e-14 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 6 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER E R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 66 KPQYAEYVERFTVRE----FDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL+ + + GR + TT+EF YFGL S + Sbjct: 122 GLV----KAEKKGRSTILTTTEEFATYFGLDSAE 151 >gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 281 [Methanococcoides burtonii DSM 6242] Length = 367 Score = 79.3 bits (194), Expect = 3e-14 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 8/150 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA+LF AGE + + LA+L+ G+E++++ G Y +Q Sbjct: 6 IIEAVLFAAGEAVDTQTLAKLINKSAKNVTPVIRSLMEEYSTRESGMEIIDLGGRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+Y + + + P +L L TL+++AY QP+ ++E+ ++RG + I+ L +R Sbjct: 66 KPKYTDVISPI----APKELKAPILRTLSMVAYHQPVVQSELVDMRGNSVYDHIRELKDR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 G IE V GR L TT F DYFGL Sbjct: 122 GFIEAVPH----GRTKLLQTTPLFADYFGL 147 >DUF387_Q981J7_40-198_PF04079.5 Length = 159 Score = 74.7 bits (182), Expect = 8e-13 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F AGEP+S E L ++ +LV VAGG+R T+ Sbjct: 3 VEATIFAAGEPISREVLTRIVG---KTCSIDLLIDDIREELRGRPYDLVAVAGGFRHLTR 59 Query: 63 PEYAEYVERLL-KTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 60 PAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRS 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 GLI R PG P Y TT FL FGL++L DLP Sbjct: 120 FGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLP 157 >gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 136 Score = 74.3 bits (181), Expect = 9e-13 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 1/82 (1%) Query: 80 KLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRDVPGRPAL 138 KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E G + GRR PGRP Sbjct: 1 KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSRGTLHVLMEAGWVRFRGRRRTPGRPVT 60 Query: 139 YGTTDEFLDYFGLKSLDDLPPL 160 GTT +FLD+FGL+ L DLP L Sbjct: 61 LGTTRDFLDHFGLEELRDLPGL 82 >gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesorhizobium loti MAFF303099] Length = 233 Score = 73.2 bits (178), Expect = 2e-12 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F AGEP+S E L ++ +LV VAGG+R T+ Sbjct: 42 VEATIFAAGEPISREVLTRIVG---KTCSIDLLIDDIREELRGRPYDLVAVAGGFRHLTR 98 Query: 63 PEYAEYVERLL-KTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 99 PAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRS 158 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 GLI R PG P Y TT FL FGL++L DLP Sbjct: 159 FGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLP 196 >DUF387_Q981I4_42-200_PF04079.5 Length = 159 Score = 70.5 bits (171), Expect = 1e-11 Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A +P++ E LA ++ +LV VAGG++ T+ Sbjct: 3 VEATIFAASQPVTRETLARIVG---KSCSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 59 Query: 63 PEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 60 PAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLRG 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 120 AGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLP 157 >gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesorhizobium loti MAFF303099] Length = 229 Score = 70.5 bits (171), Expect = 1e-11 Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A +P++ E LA ++ +LV VAGG++ T+ Sbjct: 44 VEATIFAASQPVTRETLARIVG---KSCSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 100 Query: 63 PEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 101 PAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLRG 160 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 161 AGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLP 198 >gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 229 Score = 70.5 bits (171), Expect = 1e-11 Identities = 55/158 (34%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A EP+ E LA ++ +LV VAGG++ T+ Sbjct: 38 VEATIFAASEPVGRETLARIVG---KSCSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 94 Query: 63 PEYAEYVERLL-KTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + ++ER L+ + + L IAY QPITR E+ G S I L Sbjct: 95 PAYADVIRTAVGRSERAVDLTLSEVLVLMCIAYFQPITRGELSSFFGKEISRDLIGNLRS 154 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I R PG P Y TT EFL FGL +L DLP Sbjct: 155 HGFIASGPRAPQPGAPYTYVTTKEFLLEFGLDTLHDLP 192 >gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 281 [Trichodesmium erythraeum IMS101] Length = 173 Score = 70.5 bits (171), Expect = 1e-11 Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+ LS+ ++AE+ + LE+VE GY LQ K Sbjct: 8 IEAILYLKGKALSISEIAEIAKCERGQIKDALIELMSEYAHRHTALEVVETEKGYSLQLK 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P + E +E L++ P+L AL TLA IA + IT++E+ +IRG + L+ G Sbjct: 68 PTFTELIESLIE----PELGVGALRTLAAIALKGGITQSELVDIRGSGVYQHVPELVSLG 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 I + RR R TD+F YF LD LP Sbjct: 124 FIRK--RRQKESRSYWLQVTDKFHQYF---QLDQLP 154 >gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 281 [Crocosphaera watsonii WH 8501] Length = 155 Score = 70.1 bits (170), Expect = 2e-11 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL +A+ E LE+VE GY LQ + Sbjct: 8 IEAILYLKGQPLSLMDIAQCAECEVDTAQEAMMELISDYAYRDSALEVVETETGYSLQLR 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + + + ++ P +L + AL TLA IA + PI + E+ E+RG + ++ L+E G Sbjct: 68 SVFDDLTDDII----PAELGKGALRTLAAIALKNPIVQTELIELRGSTAYQHVQELVEMG 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + + RR GR L T++F YF +D P Sbjct: 124 FVRK--RRQESGRSYLLEVTNKFHQYF---EIDQFP 154 >DUF387_Q9F5B4_43-202_PF04079.5 Length = 160 Score = 69.7 bits (169), Expect = 3e-11 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 3 IEAVIFASAEPVSRETLARVVG---KDCSIDLLIDDLVEELRDRPYELVSVAGGWQHRTR 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIA--YRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +AE + R + + E + ++A Y QPITR E+ +I G S + L Sbjct: 60 PRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNLR 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I R PG P Y TT FL FG+++L DLP Sbjct: 120 GAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLP 158 >gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] Length = 233 Score = 68.9 bits (167), Expect = 4e-11 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 45 IEAVIFASAEPVSRETLARVVG---KDCSIDLLIDDLVEELRDRPYELVSVAGGWQHRTR 101 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIA--YRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +AE + R + + E + ++A Y QPITR E+ +I G S + L Sbjct: 102 PRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNLR 161 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I R PG P Y TT FL FG+++L DLP Sbjct: 162 GAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLP 200 >gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 505 Score = 68.6 bits (166), Expect = 4e-11 Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 5/111 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 356 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 415 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV 109 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV Sbjct: 416 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGV 463 >gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyrococcus furiosus DSM 3638] Length = 188 Score = 68.2 bits (165), Expect = 7e-11 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGG-YR 58 A++EA LFVAG PLSL++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+LS L+TLA+IAY QP+ +++I ++RG + I+ L Sbjct: 68 MQVKQEYSQRVIPLMPK---PELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 LE GLI + R L GTT++F + +G D + Sbjct: 125 LEMGLIYA----EPYERTRLLGTTEKFAELYGFPENDPM 159 >gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (ypuH-like) [Pyrococcus abyssi GE5] Length = 192 Score = 68.2 bits (165), Expect = 7e-11 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGG-YR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQKVIHLMPK---PELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 LE GLI + R L GTT++F + +G D Sbjct: 125 LEMGLIYA----EPYERTKLLGTTEKFAELYGFPEND 157 >DUF387_Q9V1Y8_8-160_PF04079.5 Length = 153 Score = 67.8 bits (164), Expect = 9e-11 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGG-YR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 1 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQKVIHLMPK---PELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 LE GLI + R L GTT++F + +G D Sbjct: 118 LEMGLIYA----EPYERTKLLGTTEKFAELYGFPEND 150 >gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 245 Score = 66.6 bits (161), Expect = 2e-10 Identities = 55/162 (33%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+S + LA ++ +LV VAGG+R T+ Sbjct: 44 VEAVIFAASEPVSRQVLARIVG---ESCSIDLLIDDIREELRGRPYDLVAVAGGFRHLTR 100 Query: 63 PEYAEYVERLLKTE-----RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 P YA+ + T L+++ + L IAY QPITRAE+ G S I Sbjct: 101 PAYADAIRSAFGTTVGGSGGAGDLTQSEVLVLMCIAYFQPITRAELSSFFGKEISRDLIA 160 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 L G+I R PG P Y TT FL FGL +L DLP Sbjct: 161 HLRGAGMIASGPRSPTPGAPYTYVTTKAFLLEFGLDTLRDLP 202 >DUF387_O52287_40-199_PF04079.5 Length = 160 Score = 66.2 bits (160), Expect = 2e-10 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 3 VEAVIFASAEPVSRETLARVVG---KECSIDLLIDDLREDLQGRPYELVSVAGGWQHRTR 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIA--YRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +A+ ++ R + E + ++A Y QPITR E+ +I G S + L Sbjct: 60 PRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNLR 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I R PG P Y TT FL F +++L DLP Sbjct: 120 GAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLP 158 >DUF387_Q9K079_356-484_PF04079.5 Length = 129 Score = 65.9 bits (159), Expect = 3e-10 Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 5/111 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 1 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 60 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV 109 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV Sbjct: 61 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGV 108 >gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 231 Score = 65.5 bits (158), Expect = 4e-10 Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A EP+ E LA+++ +LV VAGG++ T+ Sbjct: 38 VEATIFAASEPVGRETLAKIVG---KTCSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 94 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + E+ L+++ + L I Y QPITR E+ G S I L Sbjct: 95 PAYADAIRTAVGGGEKATNLTQSEVLVLMCIGYFQPITRGELSSFFGKEVSRDLIGHLRG 154 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI R PG P Y TT EFL FGL +L DLP Sbjct: 155 AKLIASGPRSPTPGAPYTYVTTKEFLLEFGLDTLRDLP 192 >gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeobacter violaceus PCC 7421] Length = 158 Score = 65.5 bits (158), Expect = 4e-10 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 8/155 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ PL+LEQL+ E LE+ + A GY LQ + Sbjct: 10 LEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQLR 69 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ +G Sbjct: 70 PPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGKG 125 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 + R GR T++F YF ++ + DL Sbjct: 126 FVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 156 >DUF387_Q7NJH4_8-156_PF04079.5 Length = 149 Score = 65.5 bits (158), Expect = 5e-10 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 8/155 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ PL+LEQL+ E LE+ + A GY LQ + Sbjct: 3 LEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ +G Sbjct: 63 PPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGKG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 + R GR T++F YF ++ + DL Sbjct: 119 FVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 149 >gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyrococcus horikoshii OT3] Length = 195 Score = 64.7 bits (156), Expect = 6e-10 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGG-YR 58 A++EA LFVAG PLS+++L++ L I +E+ +VAG + Sbjct: 11 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYAERKSAIEVTKVAGDKWV 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IA+ QP+ +++I ++RG + IK L Sbjct: 71 MQVKQEYSQRVIHLMPK---PELTAGELKTLALIAFLQPVEQSKIVKLRGSQAYEHIKRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 LE GLI + R L GTT++F + +G D Sbjct: 128 LEMGLIYA----EPYERTKLLGTTEKFAELYGFPEND 160 >gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Synechococcus elongatus PCC 6301] Length = 183 Score = 64.7 bits (156), Expect = 7e-10 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 7 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 67 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +G I++ RR GR TD+F YF + ++ Sbjct: 123 QGFIQK--RRQSNGRSYWLEVTDKFHQYFQTEGMN 155 >DUF387_Q5N339_7-162_PF04079.5 Length = 156 Score = 64.7 bits (156), Expect = 7e-10 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 1 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 61 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +G I++ RR GR TD+F YF + ++ Sbjct: 117 QGFIQK--RRQSNGRSYWLEVTDKFHQYFQTEGMN 149 >gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] Length = 226 Score = 64.3 bits (155), Expect = 1e-09 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 42 VEAVIFASAEPVSRETLARVVG---KECSIDLLIDDLREDLQGRPYELVSVAGGWQHRTR 98 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIA--YRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +A+ ++ R + E + ++A Y QPITR E+ +I G S + L Sbjct: 99 PRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNLR 158 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I R PG P Y TT FL F +++L DLP Sbjct: 159 GAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLP 197 >gi|50365366|ref|YP_053791.1| chromosomal segregation/condensation protein [Mesoplasma florum L1] Length = 209 Score = 63.9 bits (154), Expect = 1e-09 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG-- 56 AI+E LLFV G+ +SL L +LE + P ++ G Sbjct: 7 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 67 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 L ++ LI+ VG+ LY TD F F + Sbjct: 127 RLRQKKLIKAVGKTSTGAN--LYTITDNFFKLFNI 159 >DUF387_Q6F0R6_7-169_PF04079.5 Length = 163 Score = 63.9 bits (154), Expect = 1e-09 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG-- 56 AI+E LLFV G+ +SL L +LE + P ++ G Sbjct: 1 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 61 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 L ++ LI+ VG+ LY TD F F + Sbjct: 121 RLRQKKLIKAVGKTSTGAN--LYTITDNFFKLFNI 153 >DUF387_Q7U6P4_8-162_PF04079.5 Length = 155 Score = 63.5 bits (153), Expect = 2e-09 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 1 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 61 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 117 QDFIER--RRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 154 >gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Nostoc punctiforme PCC 73102] Length = 180 Score = 63.5 bits (153), Expect = 2e-09 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL ++AE LE++E GY LQ + Sbjct: 9 IEAILYLKGKPLSLGEIAEYAACDRAAVKEGIIELMDNYAHRDSALEVIETPDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ +RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGVGALRTLAAIALNSPILQSDLINLRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 I + RRD R T +F YF ++ L Sbjct: 125 FIRK--RRDSDSRSYSLQVTPKFHQYFQIEQL 154 >gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] Length = 198 Score = 63.2 bits (152), Expect = 2e-09 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 9 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + RRD R T +F YF ++ L Sbjct: 125 FVRK--RRDNESRSYSLQVTPKFHQYFQIEQL 154 >gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 165 Score = 63.2 bits (152), Expect = 2e-09 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 8 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 67 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 68 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 124 QDFIER--RRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 161 >DUF387_Q98P19_35-194_PF04079.5 Length = 160 Score = 62.8 bits (151), Expect = 3e-09 Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+ E LA ++ ELV VAGG++ +TK Sbjct: 3 VEAVIFAANEPVPREVLARVVS---KSCNLDLVIDDIRAELAGRPYELVSVAGGWQHRTK 59 Query: 63 PEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + + + T + +LS++ L IAY QPITR E+ G S I L Sbjct: 60 KAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGVLR 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI R PG P Y TT FL FGL++L LP Sbjct: 120 GQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLP 158 >DUF387_Q8YLY0_7-157_PF04079.5 Length = 151 Score = 62.0 bits (149), Expect = 5e-09 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 3 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 63 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + RRD R T +F YF ++ L Sbjct: 119 FVRK--RRDNESRSYSLQVTPKFHQYFQIEQL 148 >gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 232 Score = 61.6 bits (148), Expect = 6e-09 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+ E LA ++ ELV VAGG++ +T+ Sbjct: 31 VEAVIFAAPEPVPREVLARVVG---RACNLDLIVDDIRDELRGRPYELVSVAGGWQHRTR 87 Query: 63 PEYAEYVER---LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +AE + L RP LS+A L IAY QPITR E+ G S I L Sbjct: 88 KGFAEAIRAATGLGDQVRP--LSQAESLILLCIAYYQPITRGELGRFFGQEVSRDLIGYL 145 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 146 RRLGFIASGPRAPQPGAPYTYVTTNGFLSHFGFATLRDLPDM 187 >DUF387_Q8KGW4_35-195_PF04079.5 Length = 161 Score = 61.6 bits (148), Expect = 6e-09 Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP++ LA ++ ELV VAGG++ +TK Sbjct: 3 VEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHRTK 59 Query: 63 PEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + + T E +LS+A L IAY QPITR E+ G S I L Sbjct: 60 KIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVL 119 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI R PG P Y TT FL FGL +L LP Sbjct: 120 RGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLP 159 >gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesorhizobium loti MAFF303099] Length = 225 Score = 61.2 bits (147), Expect = 8e-09 Identities = 52/159 (32%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+ E LA ++ ELV VAGG++ +TK Sbjct: 37 VEAVIFAANEPVPREVLARVVS---KSCNLDLVIDDIRAELAGRPYELVSVAGGWQHRTK 93 Query: 63 PEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + + + T + +LS++ L IAY QPITR E+ G S I L Sbjct: 94 KAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGVLR 153 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI R PG P Y TT FL FGL++L LP Sbjct: 154 GQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLP 192 >DUF387_Q98A15_35-195_PF04079.5 Length = 161 Score = 61.2 bits (147), Expect = 8e-09 Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 7/160 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+ E LA ++ ELV VAGG++ +TK Sbjct: 3 VEAVIFAANEPVPREMLARVVG---KNCNLDLVIDDIRTELAGRPYELVSVAGGWQHRTK 59 Query: 63 PEYAEYVERLLK---TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + + + +LS++ L IAY QPITR E+ G S I L Sbjct: 60 KVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVL 119 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI R PG P Y TT FL FGL +L LP Sbjct: 120 RAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLP 159 >gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermotoga maritima MSB8] Length = 167 Score = 61.2 bits (147), Expect = 8e-09 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F A ++LE+L ++LE P G+ L EV G YR Sbjct: 5 AAIEALIF-ASNGITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 63 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V + L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 64 TKPEYAGFVSK-LSGRKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 123 MGIV----RKKRKGKSYLYQLSPSFVE 145 >gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 236 Score = 61.2 bits (147), Expect = 9e-09 Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F + P+ E LA L+ ELV VAGG++ ++K Sbjct: 30 VEAAIFASPTPVPRETLARLIG---RACVLDELIADIRDELKPRPYELVFVAGGFQHRSK 86 Query: 63 PEYAEYVERLL--KTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E + +L + PP LS+ ++ IAY QP+TR+ I + G I L+ Sbjct: 87 ARFTEAIRAVLGGRETGPPDLSKTESLVISAIAYLQPVTRSSISRLLGKAISRDIIAKLK 146 Query: 121 R-GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI R PG P Y TT FL FGL SL DLP + Sbjct: 147 RLDLIGAGPRMAEPGAPFSYVTTPTFLSVFGLASLRDLPEI 187 >gi|57160221|dbj|BAD86151.1| predicted transcription regulator, YpuH-like family [Thermococcus kodakarensis KOD1] Length = 194 Score = 60.8 bits (146), Expect = 1e-08 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQRVIHLMPK---PDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 125 VEMGLVYA----EPYERTKLLGTTKKFAELYGFPEND 157 >gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti] Length = 231 Score = 60.8 bits (146), Expect = 1e-08 Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP++ LA ++ ELV VAGG++ +TK Sbjct: 37 VEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHRTK 93 Query: 63 PEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + + T E +LS+A L IAY QPITR E+ G S I L Sbjct: 94 KIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVL 153 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI R PG P Y TT FL FGL +L LP Sbjct: 154 RGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLP 193 >DUF387_P74610_5-159_PF04079.5 Length = 155 Score = 60.8 bits (146), Expect = 1e-08 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 3 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 63 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + R+ GR TD+F YF + SL Sbjct: 119 FVRK--RKQTEGRSYWLEITDKFHQYFEIDSL 148 >DUF387_Q9WYW4_5-159_PF04079.5 Length = 155 Score = 60.8 bits (146), Expect = 1e-08 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F A ++LE+L ++LE P G+ L EV G YR Sbjct: 1 AAIEALIF-ASNGITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 59 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V + L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 60 TKPEYAGFVSK-LSGRKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 119 MGIV----RKKRKGKSYLYQLSPSFVE 141 >gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synechocystis sp. PCC 6803] Length = 162 Score = 60.5 bits (145), Expect = 1e-08 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 7 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 67 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + R+ GR TD+F YF + SL Sbjct: 123 FVRK--RKQTEGRSYWLEITDKFHQYFEIDSL 152 >gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator containing the HTH domain [uncultured euryarchaeote Alv-FOS4] Length = 169 Score = 60.5 bits (145), Expect = 2e-08 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 8/152 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF P+ + ++A++ + +E+V + Y +Q Sbjct: 7 IVEAVLFSTDRPMRVGEIAKIGGLRSEEVSKAMRKLREEYEQRDGAIEIVRIGNKYVMQL 66 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + EY Y + K E ++ L+TLAIIAY QPIT+ ++ E+ G + L +R Sbjct: 67 RDEYVNYGYSVGKKE----MNDDVLKTLAIIAYYQPITQRKLREMLGTKVYQHVDELKKR 122 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 GLI G++ GR + TT F +YFG+ + Sbjct: 123 GLI--YGKKS--GRTEILRTTKRFNEYFGIDA 150 >DUF387_Q5JDN0_8-160_PF04079.5 Length = 153 Score = 60.1 bits (144), Expect = 2e-08 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 1 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQRVIHLMPK---PDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 118 VEMGLVYA----EPYERTKLLGTTKKFAELYGFPEND 150 >DUF387_Q6LBD4_2-160_PF04079.5 Length = 159 Score = 60.1 bits (144), Expect = 2e-08 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F + EP++ E LA ++ ELV VAGG++ +T+ Sbjct: 3 VEAVIFASPEPVTREILARVVG---GDCNIDLIIDDIRDELRGRPYELVAVAGGWQHRTR 59 Query: 63 PEYAEYVER---LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +A + L RP LS+ L IAY QPITR E+ + G S I L Sbjct: 60 KVFATAIRTATGLGDQVRP--LSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 118 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 159 >gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesorhizobium loti MAFF303099] Length = 240 Score = 58.9 bits (141), Expect = 4e-08 Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 7/160 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+ E LA ++ ELV VAGG++ +TK Sbjct: 37 VEAVIFAANEPVPREMLARVVG---KNCNLDLVIDDIRTELAGRPYELVSVAGGWQHRTK 93 Query: 63 PEYAEYVERLLK---TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + + + +LS++ L IAY QPITR E+ G S I L Sbjct: 94 KVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIGVL 153 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI R PG P Y TT FL FGL +L LP Sbjct: 154 RAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLP 193 >gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Oligotropha carboxidovorans] Length = 194 Score = 58.5 bits (140), Expect = 6e-08 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F + EP++ E LA ++ ELV VAGG++ +T+ Sbjct: 4 VEAVIFASPEPVTREILARVVG---GDCNIDLIIDDIRDELRGRPYELVAVAGGWQHRTR 60 Query: 63 PEYAEYVER---LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +A + L RP LS+ L IAY QPITR E+ + G S I L Sbjct: 61 KVFATAIRTATGLGDQVRP--LSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 119 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 160 >DUF387_Q7UPG2_127-292_PF04079.5 Length = 166 Score = 57.8 bits (138), Expect = 9e-08 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 1 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 61 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 120 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 121 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 164 >gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongatus BP-1] Length = 173 Score = 57.0 bits (136), Expect = 1e-07 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ +PL+L +LA L LE+V++ Y LQ K Sbjct: 14 VEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQLK 73 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL G Sbjct: 74 SAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTLG 129 Query: 123 LI 124 I Sbjct: 130 FI 131 >gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 196 Score = 57.0 bits (136), Expect = 1e-07 Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + P+S E LA ++ ++ V G+ L+T+ Sbjct: 29 IEAVLFASATPVSREALARVVG---QGVSVELLIDDLSAELESRSFQVAHVKDGWFLRTR 85 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 YA + + L+ + LA IAY QPITR +++I G + S I L + Sbjct: 86 SAYASAIRDAQSAGHQVMDLNAFDVAVLAAIAYHQPITREGLKDIFGKDISRDLIGRLHD 145 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGLI R G P + TTD+FL F L++L DLP Sbjct: 146 RGLIGNGPRAPRRGAPYTFVTTDQFLLAFDLETLQDLP 183 >gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 297 Score = 56.6 bits (135), Expect = 2e-07 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 127 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 186 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 187 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 246 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 247 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 290 >gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation and condensation protein ScpB [Prochlorococcus marinus str. NATL2A] Length = 168 Score = 56.6 bits (135), Expect = 2e-07 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G P S +++AELL+ LE+ E Y L+ Sbjct: 11 AKIEAILYLKGRPTSSKEMAELLDKDIAEIEKALWELKAGYAQRDTSLEINENKSHYSLE 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P LS A L TLA +A ++ I ++E+ ++RG + IK L+E Sbjct: 71 LRQGLGELVQDLL----PADLSIATLRTLATVALKKKILQSELVDLRGSGAYDHIKELVE 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 + +E RR GR +++F F + Sbjct: 127 KNFVER--RRQKDGRSFWLTLSEKFHQTFSV 155 >DUF387_Q8DKL3_12-162_PF04079.5 Length = 151 Score = 56.2 bits (134), Expect = 3e-07 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ +PL+L +LA L LE+V++ Y LQ K Sbjct: 3 VEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL G Sbjct: 63 SAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTLG 118 Query: 123 LI 124 I Sbjct: 119 FI 120 >DUF387_Q7V7Q5_20-168_PF04079.5 Length = 149 Score = 55.8 bits (133), Expect = 3e-07 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 1 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 61 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 + IE +R GR +++F F + Sbjct: 117 QNFIER--KRQSEGRSYWLTLSEKFHRTFSV 145 >gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 177 Score = 55.8 bits (133), Expect = 3e-07 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 20 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 80 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 + IE +R GR +++F F + Sbjct: 136 QNFIER--KRQSEGRSYWLTLSEKFHRTFSV 164 >DUF387_Q8KVW0_30-188_PF04079.5 Length = 159 Score = 54.3 bits (129), Expect = 9e-07 Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L + P+ E LA ++ E+ +VAGG+ +T+ Sbjct: 3 IEAVLSASASPVPREDLARVVG---QGASVDLLVEDLAADLEGRAFEINQVAGGWIFRTR 59 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 60 ATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLHA 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 120 RDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLP 157 >gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 160 Score = 53.5 bits (127), Expect = 2e-06 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 3 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 63 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 118 Query: 121 RGLIEEVGRRD 131 +E +R+ Sbjct: 119 MNFVERKRQRE 129 >DUF387_Q7VC16_3-151_PF04079.5 Length = 149 Score = 53.1 bits (126), Expect = 2e-06 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 1 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 61 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 116 Query: 121 RGLIEEVGRRD 131 +E +R+ Sbjct: 117 MNFVERKRQRE 127 >gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] Length = 200 Score = 52.8 bits (125), Expect = 3e-06 Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L + P+ E LA ++ E+ +VAGG+ +T+ Sbjct: 32 IEAVLSASASPVPREDLARVVG---QGASVDLLVEDLAADLEGRAFEINQVAGGWIFRTR 88 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 89 ATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLHA 148 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 149 RDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLP 186 >gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 52.4 bits (124), Expect = 3e-06 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 6/151 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ G P+S + L+E+ +EL E+ Y L+ K Sbjct: 5 VEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLELK 64 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 65 SILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNKK 120 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 121 FI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 149 >DUF387_Q7V1G4_3-155_PF04079.5 Length = 153 Score = 52.0 bits (123), Expect = 5e-06 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 6/151 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ G P+S + L+E+ +EL E+ Y L+ K Sbjct: 3 VEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLELK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 63 SILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNKK 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 119 FI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 147 >DUF387_Q9HKK2_10-161_PF04079.5 Length = 152 Score = 44.3 bits (103), Expect = 0.001 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 9/150 (6%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 3 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y + PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 63 SQYFSEAYAV----SPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 118 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 GL++ + + G +Y +F YFG+ Sbjct: 119 GLVKLINK----GNSKIYTLGRKFESYFGI 144 >gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 179 Score = 43.9 bits (102), Expect = 0.001 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 9/150 (6%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 12 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 71 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y + PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 72 SQYFSEAYAV----SPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 GL++ + + G +Y +F YFG+ Sbjct: 128 GLVKLINK----GNSKIYTLGRKFESYFGI 153 >gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 171 Score = 41.2 bits (95), Expect = 0.009 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 15 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 74 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ P+LS+ LA +A + + + + G +D I L Sbjct: 75 KEYYDFAYRVME----PELSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 130 Query: 123 LI 124 LI Sbjct: 131 LI 132 >DUF387_Q97B36_13-163_PF04079.5 Length = 151 Score = 40.8 bits (94), Expect = 0.013 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 3 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ P+LS+ LA +A + + + + G +D I L Sbjct: 63 KEYYDFAYRVME----PELSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 118 Query: 123 LI 124 LI Sbjct: 119 LI 120 >gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia mallei FMH] Length = 85 Score = 36.2 bits (82), Expect = 0.31 Identities = 22/76 (28%), Positives = 32/76 (42%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTER 77 KP Y++R + R Sbjct: 69 KPAMRTYLDRCIPRSR 84 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 28... 201 4e-51 gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobac... 200 8e-51 DUF387_SCPB_22-181_PF04079.5 198 3e-50 gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HT... 198 3e-50 gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanth... 195 2e-49 gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanth... 195 3e-49 gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [D... 194 8e-49 gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanth... 194 9e-49 DUF387_Q5KXL1_19-179_PF04079.5 193 1e-48 DUF387_SCPB_8-168_PF04079.5 191 4e-48 gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clos... 191 5e-48 gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation ... 191 5e-48 gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR... 191 5e-48 DUF387_Q7X2Z5_57-216_PF04079.5 191 6e-48 gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein pr... 190 6e-48 gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncul... 190 7e-48 gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [R... 190 7e-48 gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00... 190 1e-47 DUF387_SCPB_20-180_PF04079.5 190 1e-47 gi|53803499|ref|YP_114626.1| segregation and condensation protei... 190 1e-47 gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptiona... 190 1e-47 gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbi... 188 3e-47 gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 28... 188 3e-47 gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 28... 188 3e-47 gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator... 188 4e-47 gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitros... 188 4e-47 DUF387_SCPB_18-177_PF04079.5 188 5e-47 gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pse... 187 6e-47 DUF387_Q83CP9_8-169_PF04079.5 187 6e-47 gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 28... 187 6e-47 DUF387_Q605S2_5-166_PF04079.5 187 7e-47 gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptiona... 187 7e-47 gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptiona... 187 7e-47 gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR... 187 8e-47 gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromo... 187 8e-47 DUF387_Q885L8_11-172_PF04079.5 187 9e-47 gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Baci... 187 1e-46 DUF387_Q88EG7_33-194_PF04079.5 187 1e-46 gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia sola... 187 1e-46 DUF387_Q6SI35_7-166_PF04079.5 186 1e-46 gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylell... 186 1e-46 gi|70728992|ref|YP_258726.1| segregation and condensation protei... 186 1e-46 gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptiona... 186 2e-46 gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 28... 186 2e-46 DUF387_Q82TY6_23-182_PF04079.5 186 2e-46 DUF387_Q7NSN3_12-171_PF04079.5 185 3e-46 gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptiona... 185 3e-46 gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregatio... 185 3e-46 DUF387_Q8XZW0_8-167_PF04079.5 185 3e-46 gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 28... 185 3e-46 gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceano... 185 4e-46 gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 28... 185 4e-46 gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation ... 185 4e-46 gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 28... 185 4e-46 gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 28... 184 5e-46 gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] 184 6e-46 gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptiona... 184 7e-46 gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 28... 184 7e-46 gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus lic... 183 1e-45 DUF387_Q8PK59_20-181_PF04079.5 183 1e-45 DUF387_Q67NF6_8-166_PF04079.5 183 1e-45 gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptiona... 183 1e-45 gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptiona... 183 2e-45 DUF387_Q9HZ43_11-172_PF04079.5 183 2e-45 DUF387_Q63TP4_8-167_PF04079.5 182 2e-45 gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legio... 182 2e-45 gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 28... 182 2e-45 gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clos... 182 2e-45 DUF387_SCPB_8-168_PF04079.5 182 2e-45 DUF387_SCPB_10-169_PF04079.5 182 3e-45 DUF387_Q9PAP3_17-178_PF04079.5 182 3e-45 gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 28... 182 3e-45 gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptiona... 181 4e-45 gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptiona... 181 5e-45 gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 28... 181 5e-45 gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 28... 181 5e-45 gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator... 181 5e-45 DUF387_Q73PC5_1-159_PF04079.5 180 8e-45 gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 28... 180 9e-45 gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR... 180 1e-44 DUF387_Q5ZVJ4_11-172_PF04079.5 179 2e-44 gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewan... 179 2e-44 DUF387_SCPB_5-166_PF04079.5 179 2e-44 DUF387_Q5QX76_8-169_PF04079.5 178 3e-44 gi|42526386|ref|NP_971484.1| transcriptional regulator, putative... 178 3e-44 DUF387_Q7ZAN0_10-169_PF04079.5 178 4e-44 DUF387_Q65HX2_10-169_PF04079.5 178 4e-44 gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Lept... 178 5e-44 gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Borde... 177 6e-44 gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xant... 177 7e-44 gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Str... 177 7e-44 gi|20807774|ref|NP_622945.1| predicted transcriptional regulator... 177 7e-44 gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 28... 177 7e-44 gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 28... 177 8e-44 DUF387_Q7ZAJ6_10-171_PF04079.5 177 8e-44 gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesor... 177 9e-44 DUF387_Q8KF54_10-171_PF04079.5 177 1e-43 DUF387_SCPB_5-164_PF04079.5 177 1e-43 gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 28... 177 1e-43 DUF387_Q7W9A9_10-171_PF04079.5 176 1e-43 gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Strep... 176 1e-43 DUF387_Q5M621_6-167_PF04079.5 176 1e-43 gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation ... 176 2e-43 DUF387_SCPB_5-166_PF04079.5 176 2e-43 gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptiona... 175 2e-43 gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chloro... 175 2e-43 gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Strep... 175 3e-43 gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 28... 175 3e-43 DUF387_SCPB_5-166_PF04079.5 175 3e-43 DUF387_Q981I4_42-200_PF04079.5 175 4e-43 gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus... 175 4e-43 gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptiona... 175 4e-43 gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 28... 174 5e-43 gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptiona... 174 5e-43 DUF387_SCPB_6-167_PF04079.5 174 5e-43 gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactob... 174 5e-43 gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Strept... 174 6e-43 gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [... 174 7e-43 DUF387_Q5LQJ0_23-178_PF04079.5 173 9e-43 gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lacto... 173 1e-42 gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesor... 173 1e-42 gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 28... 173 1e-42 gi|56679084|gb|AAV95750.1| segregation and condensation protein ... 173 1e-42 DUF387_Q5WH04_9-169_PF04079.5 173 1e-42 gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 28... 173 1e-42 gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [K... 173 1e-42 gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Para... 173 2e-42 gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptiona... 173 2e-42 gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 28... 173 2e-42 DUF387_Q98LC4_45-200_PF04079.5 173 2e-42 DUF387_Q84FE4_81-236_PF04079.5 173 2e-42 gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 28... 172 2e-42 gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR... 172 2e-42 gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 28... 172 2e-42 gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] 172 2e-42 DUF387_SCPB_5-166_PF04079.5 172 2e-42 gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus ... 172 3e-42 DUF387_Q74C44_6-165_PF04079.5 172 3e-42 gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptiona... 172 3e-42 gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Strep... 172 4e-42 DUF387_SCPB_5-166_PF04079.5 171 4e-42 DUF387_Q5TXY6_13-173_PF04079.5 171 5e-42 gi|56478941|ref|YP_160530.1| putative transcriptional regulator,... 171 6e-42 gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptiona... 171 6e-42 gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesor... 171 6e-42 gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [M... 171 6e-42 DUF387_Q98P19_35-194_PF04079.5 171 6e-42 DUF387_O52287_40-199_PF04079.5 170 8e-42 gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00... 170 8e-42 DUF387_Q98A15_35-195_PF04079.5 170 8e-42 gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] 170 9e-42 gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [The... 170 9e-42 DUF387_Q5SK60_9-166_PF04079.5 170 1e-41 gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesor... 170 1e-41 gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptiona... 170 1e-41 gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae... 170 1e-41 gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Meso... 170 1e-41 gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Aci... 170 1e-41 DUF387_SCPB_8-169_PF04079.5 170 1e-41 gi|28378542|ref|NP_785434.1| transcription regulator (putative) ... 170 1e-41 gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [E... 170 1e-41 gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptiona... 169 2e-41 gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [M... 169 2e-41 DUF387_Q5NZ85_11-170_PF04079.5 169 2e-41 gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 28... 169 2e-41 gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] 169 2e-41 gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 28... 169 2e-41 gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesor... 169 3e-41 gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 28... 168 3e-41 DUF387_SCPB_8-168_PF04079.5 168 3e-41 gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 28... 168 3e-41 DUF387_Q8KGW4_35-195_PF04079.5 168 3e-41 gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Strep... 168 3e-41 DUF387_Q9F5B4_43-202_PF04079.5 168 4e-41 DUF387_SCPB_5-166_PF04079.5 168 4e-41 gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] 168 4e-41 gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [M... 168 4e-41 DUF387_Q6FDU6_20-179_PF04079.5 168 4e-41 DUF387_SCPB_5-166_PF04079.5 168 5e-41 gi|61102014|ref|ZP_00377468.1| segregation and condensation prot... 168 5e-41 DUF387_Q981J7_40-198_PF04079.5 168 5e-41 DUF387_Q9S231_28-186_PF04079.5 168 6e-41 DUF387_Q6LBD4_2-160_PF04079.5 167 6e-41 gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lacto... 167 8e-41 gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptiona... 167 8e-41 DUF387_Q5FKG0_6-167_PF04079.5 167 8e-41 DUF387_Q89KZ6_34-189_PF04079.5 166 2e-40 DUF387_Q6MER5_69-232_PF04079.5 166 2e-40 gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Olig... 165 2e-40 gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 28... 165 4e-40 gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 28... 165 4e-40 DUF387_Q6N5X0_36-191_PF04079.5 165 5e-40 DUF387_SCPB_106-268_PF04079.5 164 5e-40 gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Myco... 164 5e-40 gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdello... 164 7e-40 gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycopl... 164 7e-40 gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 28... 164 8e-40 DUF387_O05669_30-188_PF04079.5 163 1e-39 gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifido... 163 1e-39 gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycoba... 163 2e-39 gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 28... 162 3e-39 gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycob... 162 3e-39 DUF387_SCPB_24-186_PF04079.5 162 3e-39 gi|73662567|ref|YP_301348.1| putative transcriptional regulator ... 161 5e-39 gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Cory... 160 7e-39 gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptiona... 160 8e-39 gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 28... 160 8e-39 gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregatio... 160 9e-39 DUF387_Q6MLN0_104-265_PF04079.5 160 9e-39 DUF387_Q5YY85_27-185_PF04079.5 160 9e-39 DUF387_Q7ZAN2_15-173_PF04079.5 160 1e-38 DUF387_O33209_30-188_PF04079.5 160 1e-38 gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putat... 160 1e-38 DUF387_SCPB_4-165_PF04079.5 160 1e-38 gi|47459311|ref|YP_016173.1| predicted transcriptional regulator... 160 1e-38 DUF387_Q8G4K8_52-216_PF04079.5 159 2e-38 DUF387_Q740D9_34-192_PF04079.5 159 2e-38 DUF387_SCPB_15-176_PF04079.5 159 2e-38 gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Myc... 159 2e-38 DUF387_Q8YGS3_23-178_PF04079.5 158 3e-38 gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodo... 157 9e-38 gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Brady... 157 1e-37 gi|75675995|ref|YP_318416.1| chromosome segregation and condensa... 156 2e-37 gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 28... 156 2e-37 gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisser... 156 2e-37 gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR... 155 4e-37 gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Noca... 154 6e-37 gi|68263552|emb|CAI37040.1| segregation and condensation protein... 153 9e-37 DUF387_SCPB_7-168_PF04079.5 153 1e-36 gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycop... 153 1e-36 DUF387_Q7UE48_165-325_PF04079.5 153 1e-36 gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptiona... 153 1e-36 gi|71083666|ref|YP_266386.1| segregation and condensation protei... 152 2e-36 gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methan... 152 2e-36 gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrob... 152 3e-36 DUF387_SCPB_5-157_PF04079.5 152 4e-36 gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphy... 152 4e-36 gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphy... 152 4e-36 gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureapla... 152 4e-36 gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psy... 152 4e-36 DUF387_SCPB_23-185_PF04079.5 151 7e-36 DUF387_Q8UEP8_40-195_PF04079.5 150 9e-36 DUF387_SCPB_188-349_PF04079.5 150 1e-35 gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leif... 150 1e-35 gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methan... 150 1e-35 gi|19552641|ref|NP_600643.1| predicted transcriptional regulator... 150 1e-35 DUF387_Q6AGG0_22-189_PF04079.5 150 1e-35 gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Trepon... 150 2e-35 gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 28... 149 2e-35 gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] 149 2e-35 DUF387_Q92Q27_30-185_PF04079.5 149 2e-35 gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycop... 149 2e-35 DUF387_Q8NQK9_9-167_PF04079.5 149 2e-35 gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [A... 149 2e-35 DUF387_Q8KVW0_30-188_PF04079.5 149 3e-35 DUF387_O83471_18-180_PF04079.5 148 4e-35 DUF387_Q8TI25_8-157_PF04079.5 148 4e-35 DUF387_Q5ZZQ3_4-166_PF04079.5 148 4e-35 gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sino... 148 5e-35 gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 28... 148 5e-35 gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 28... 147 6e-35 DUF387_Q6NHE4_7-170_PF04079.5 146 1e-34 gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Coryn... 146 2e-34 gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulob... 146 2e-34 gi|57284636|gb|AAW36730.1| segregation and condensation protein ... 146 2e-34 gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 28... 145 3e-34 DUF387_Q9A6S9_11-166_PF04079.5 145 5e-34 gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 28... 144 7e-34 DUF387_Q7P2S1_5-163_PF04079.5 143 1e-33 gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [F... 143 1e-33 gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 28... 143 2e-33 DUF387_SCPB_5-157_PF04079.5 142 4e-33 gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [M... 142 4e-33 gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Myc... 141 5e-33 DUF387_O28692_5-154_PF04079.5 140 9e-33 gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archae... 139 2e-32 gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinoc... 138 4e-32 gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusob... 138 4e-32 DUF387_Q6MTL7_7-171_PF04079.5 138 5e-32 gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Myco... 138 5e-32 DUF387_Q9RTA4_13-171_PF04079.5 136 2e-31 gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 28... 135 4e-31 gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] 135 5e-31 gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptiona... 134 9e-31 DUF387_P74610_5-159_PF04079.5 133 1e-30 gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synec... 133 1e-30 gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 28... 133 1e-30 gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 28... 132 2e-30 gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (... 132 3e-30 gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyroco... 132 3e-30 DUF387_Q8YLY0_7-157_PF04079.5 131 4e-30 DUF387_Q9V1Y8_8-160_PF04079.5 130 8e-30 gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Proc... 130 2e-29 gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeo... 128 4e-29 DUF387_Q7V7Q5_20-168_PF04079.5 128 5e-29 gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Syn... 127 7e-29 gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptiona... 127 8e-29 DUF387_Q7NJH4_8-156_PF04079.5 127 8e-29 gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Syne... 126 1e-28 DUF387_Q7U6P4_8-162_PF04079.5 126 1e-28 DUF387_Q5N339_7-162_PF04079.5 126 2e-28 gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyroco... 126 2e-28 gi|57160221|dbj|BAD86151.1| predicted transcription regulator, Y... 125 4e-28 gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator c... 123 1e-27 DUF387_Q5JDN0_8-160_PF04079.5 123 2e-27 gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptiona... 121 7e-27 gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation ... 120 8e-27 gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluco... 120 1e-26 gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermo... 120 1e-26 DUF387_Q6F0R6_7-169_PF04079.5 119 2e-26 gi|50365366|ref|YP_053791.1| chromosomal segregation/condensatio... 119 2e-26 DUF387_Q9WYW4_5-159_PF04079.5 119 2e-26 DUF387_Q5FQ51_2-103_PF04079.5 119 3e-26 DUF387_Q7VC16_3-151_PF04079.5 118 3e-26 DUF387_Q7V1G4_3-155_PF04079.5 117 9e-26 gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Proch... 117 9e-26 gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putat... 116 1e-25 gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongat... 116 2e-25 DUF387_Q8DKL3_12-162_PF04079.5 113 1e-24 DUF387_Q7UPG2_127-292_PF04079.5 113 2e-24 gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. ... 111 6e-24 gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisse... 100 1e-20 DUF387_Q9K079_356-484_PF04079.5 98 4e-20 DUF387_Q9HKK2_10-161_PF04079.5 96 3e-19 gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Ther... 96 3e-19 Sequences not found previously or not previously below threshold: gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma v... 73 3e-12 DUF387_Q97B36_13-163_PF04079.5 71 8e-12 gi|13475236|ref|NP_106800.1| hypothetical protein msr6263 [Mesor... 68 6e-11 DUF387_Q6L0G6_6-153_PF04079.5 63 3e-09 gi|48430671|gb|AAT43536.1| thiosulfate sulfurtransferase [Picrop... 63 3e-09 gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptiona... 51 7e-06 gi|68141196|gb|EAM94485.1| hypothetical protein FaciDRAFT_1595 [... 48 6e-05 gi|68183625|ref|ZP_00556599.1| hypothetical protein JannDRAFT_05... 46 4e-04 gi|24379105|ref|NP_721060.1| putative transcriptional regulator ... 43 0.003 gi|38234449|ref|NP_940216.1| Putative DNA-biding protein [Coryne... 42 0.005 gi|55232751|gb|AAV48170.1| transcription regulator [Haloarcula m... 41 0.008 gi|56461561|ref|YP_156842.1| Primosomal protein A (replication f... 41 0.008 gi|48429918|gb|AAT42783.1| hypothetical protein PTO0198 [Picroph... 40 0.029 gi|18976604|ref|NP_577961.1| transcription regulatory protein, a... 40 0.030 MarR_Q8DV74_36-105_PF01047.12 39 0.032 gi|65316950|ref|ZP_00389909.1| COG2345: Predicted transcriptiona... 39 0.035 gi|50978532|dbj|BAD34978.1| putative transcriptional repressor [... 38 0.071 gi|48849841|ref|ZP_00304084.1| COG1846: Transcriptional regulato... 38 0.077 gi|47566996|ref|ZP_00237713.1| transcriptional regulator, DeoR f... 38 0.092 gi|6460206|gb|AAF11936.1| conserved hypothetical protein [Deinoc... 37 0.15 gi|51893891|ref|YP_076582.1| transcriptional repressor [Symbioba... 37 0.15 gi|23494670|dbj|BAC19636.1| putative transcription regulator [Co... 37 0.17 gi|59711413|ref|YP_204189.1| N-acetylglucosamine repressor [Vibr... 37 0.20 gi|1924925|emb|CAA96093.1| xyl repressor [Bacillus megaterium] 36 0.22 gi|4980601|gb|AAD35204.1| transcriptional regulator, XylR-relate... 36 0.23 gi|6002233|emb|CAB56677.1| putative MarR-family regulatory prote... 36 0.26 gi|62423215|ref|ZP_00378384.1| COG1846: Transcriptional regulato... 36 0.29 gi|68263661|emb|CAI37149.1| putative transcriptional regulator (... 36 0.32 gi|1591264|gb|AAB98552.1| conserved hypothetical protein [Methan... 36 0.33 gi|51594904|ref|YP_069095.1| putative transcriptional repressor ... 36 0.34 gi|67985648|gb|EAM73502.1| regulatory protein, MarR [Kineococcus... 36 0.37 gi|62643261|ref|XP_226993.3| PREDICTED: similar to Nyd-sp12 prot... 36 0.39 gi|18978434|ref|NP_579791.1| hypothetical protein PF2062 [Pyroco... 36 0.44 gi|42737195|gb|AAS41128.1| xylose repressor [Bacillus cereus ATC... 35 0.48 gi|37527029|ref|NP_930373.1| LsrR DNA-binding protein [Photorhab... 35 0.56 gi|15100158|ref|NP_114161.2| spermatogenesis associated 16 [Homo... 35 0.80 >gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 281 [Moorella thermoacetica ATCC 39073] Length = 195 Score = 201 bits (513), Expect = 4e-51 Identities = 87/160 (54%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +E LLFVAG P+S++ LA L + P GL++ VAGGY++ Sbjct: 11 AALECLLFVAGGPVSVDSLAACLGVKPGDVDELAAELQELYAREERGLQIRAVAGGYQMC 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A Y E LL+ E P LSRAALETLAIIAYRQP+TR E+E IRGV DG + TL+ Sbjct: 71 TRPEFASYCEALLRPELPA-LSRAALETLAIIAYRQPVTRTEMEYIRGVKVDGVLNTLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EVGR++ PGRP LYGTT +FL++FGLK L +LPPL Sbjct: 130 RGLVQEVGRKEAPGRPILYGTTPKFLEFFGLKDLKELPPL 169 >gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobacillus kaustophilus HTA426] Length = 217 Score = 200 bits (510), Expect = 8e-51 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 19 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 78 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 79 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 138 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 139 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 179 >DUF387_SCPB_22-181_PF04079.5 Length = 160 Score = 198 bits (505), Expect = 3e-50 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 1 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 61 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 121 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 160 >gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HTH-type), YPUH B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] Length = 202 Score = 198 bits (505), Expect = 3e-50 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 22 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 81 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 82 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 141 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 142 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 181 >gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 401 Score = 195 bits (498), Expect = 2e-49 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADLHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 424 Score = 195 bits (497), Expect = 3e-49 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREACAERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EERDWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [Desulfitobacterium hafniense DCB-2] Length = 196 Score = 194 bits (493), Expect = 8e-49 Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EALLFVA +PL+ E+LAE+L++ G+ L+EV GY+L Sbjct: 9 AGVEALLFVADKPLTKERLAEILQLSSEDIAEILYDLKQRYAAPASGVTLIEVNEGYKLG 68 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE + Y+E L LS AALE LAIIAY+QP+TR E++ IRGV SD ++ TL+E Sbjct: 69 TKPEMSAYIETLYHQP-AQGLSGAALEVLAIIAYKQPVTRGEVDFIRGVQSDRSLGTLVE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +GL+++VGR++ PGRP LYGTT++FL +FGLKSL++LP L Sbjct: 128 KGLVKDVGRKEGPGRPILYGTTEQFLIHFGLKSLEELPDL 167 >gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 412 Score = 194 bits (493), Expect = 9e-49 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 21 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 80 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 81 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 139 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 140 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 181 >DUF387_Q5KXL1_19-179_PF04079.5 Length = 161 Score = 193 bits (492), Expect = 1e-48 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 1 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 61 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 121 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 161 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 191 bits (487), Expect = 4e-48 Identities = 86/161 (53%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E +S EQ+A++LEI GL++V+ A YR Sbjct: 1 SIIEGLLFVSGDEGISPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 61 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 121 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 161 >gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 195 Score = 191 bits (487), Expect = 5e-48 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 20 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 79 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 80 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 139 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 140 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 180 >gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation and condensation protein ScpB [Ralstonia eutropha JMP134] Length = 311 Score = 191 bits (487), Expect = 5e-48 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 28 VLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALASGWRFQS 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE EY++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S IK L + Sbjct: 88 RPEMREYLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLED 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL++LD+LPPL Sbjct: 147 RSWIEVIGHRDVPGRPALYATTKAFLDDLGLRTLDELPPL 186 >gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR00281 [Pseudomonas putida KT2440] Length = 277 Score = 191 bits (486), Expect = 5e-48 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 33 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 92 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV IKT Sbjct: 93 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 152 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 194 >DUF387_Q7X2Z5_57-216_PF04079.5 Length = 160 Score = 191 bits (486), Expect = 6e-48 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 1 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 61 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 121 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 158 >gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein protein TIGR00281 [Bacillus cereus G9241] Length = 190 Score = 190 bits (485), Expect = 6e-48 Identities = 84/161 (52%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E + EQ+A++L I GL++V+ A YR Sbjct: 8 SIIEGLLFVSGDEGIYPEQIAKVLGIEGNEVINILEEMQKECEGAHRGLQIVQYAKVYRF 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 68 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 128 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 168 >gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 226 Score = 190 bits (485), Expect = 7e-48 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 57 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 116 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 117 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 176 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 177 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 214 >gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [Ralstonia metallidurans CH34] Length = 302 Score = 190 bits (485), Expect = 7e-48 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLRVGDLRRLFADDVGADTIRVLLEELRNDWQQRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE E+++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S +K L + Sbjct: 69 RPEMREFLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVVKKLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL+SLD+LPPL Sbjct: 128 RDWIEVIGHRDVPGRPALYATTKAFLDDLGLRSLDELPPL 167 >gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00281 [uncultured bacterium 105] Length = 225 Score = 190 bits (484), Expect = 1e-47 Identities = 77/157 (49%), Positives = 101/157 (64%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 8 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 67 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 68 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 128 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLP 164 >DUF387_SCPB_20-180_PF04079.5 Length = 161 Score = 190 bits (483), Expect = 1e-47 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 1 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 61 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 121 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 161 >gi|53803499|ref|YP_114626.1| segregation and condensation protein B [Methylococcus capsulatus str. Bath] Length = 201 Score = 190 bits (483), Expect = 1e-47 Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L P LEL +VA GYR Sbjct: 5 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 65 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 123 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 124 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 166 >gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Microbulbifer degradans 2-40] Length = 352 Score = 190 bits (483), Expect = 1e-47 Identities = 82/162 (50%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE + AGE LS++++ L + P G ELVEVA G+R Sbjct: 11 IIEGAILAAGEALSIDRILSLFDENEQPEKDDIKQALLAIQEKNAGRGFELVEVASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + A +V RL E+P K SRA LETLA++AYRQPITR +IE++RGV S IKTL Sbjct: 71 QVVEDIAMWVNRLWD-EKPQKYSRALLETLALVAYRQPITRGDIEDVRGVAVSSHIIKTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER ++ VG RDVPGRPALY TT +FLDYF LKSLD+LP L Sbjct: 130 VEREWVKVVGHRDVPGRPALYATTRQFLDYFNLKSLDELPTL 171 >gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbiobacterium thermophilum IAM 14863] Length = 219 Score = 188 bits (480), Expect = 3e-47 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 9 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 69 RPEAAEYVERLLQPKSRG-LSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP Sbjct: 128 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPP 165 >gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 281 [Nitrosomonas eutropha C71] Length = 216 Score = 188 bits (479), Expect = 3e-47 Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L EPL++ L +L E G+ELV VAGG+R Q+ Sbjct: 26 VVEAALLTTSEPLTINDLKKLFEGNIDKKMLHESLTILDEKWCNSGIELVLVAGGWRFQS 85 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 86 KPEMQIFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQVIKTLES 144 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+R++PG+P LY TT FLD L+SL+ LP L Sbjct: 145 RGWIETIGQREIPGKPYLYATTRHFLDDLNLQSLEQLPSL 184 >gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 281 [Azotobacter vinelandii AvOP] Length = 263 Score = 188 bits (479), Expect = 3e-47 Identities = 87/162 (53%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L AG PLSLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAWLLAAGRPLSLERLGELFEEGERPEPACLRDALAILARSCQGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + +A +V RL + ERP + SRA LETLA+IAYRQPI+R EIEE+RGV S I+TL Sbjct: 72 QVRERFAPWVGRLWE-ERPQRYSRALLETLALIAYRQPISRGEIEEVRGVAVSSNIIRTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG R+VPGRPAL+ TT FLD+F LKSLD+LPPL Sbjct: 131 QEREWIRVVGYREVPGRPALFATTRAFLDHFNLKSLDELPPL 172 >gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 188 bits (478), Expect = 4e-47 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EPL+ +L + E G+EL++VA G+R QT Sbjct: 15 VLEAALLAAIEPLTPAELKRMFEHELSNETLRRALDELRAAWHGRGVELIQVADGWRFQT 74 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + E ++ RL K E+PP+ SRA LETLAIIAYRQP+TR +IE++RGV + IK L E Sbjct: 75 RAEMQPWLSRL-KNEKPPRYSRAVLETLAIIAYRQPVTRGDIEDVRGVAVNPNIIKALEE 133 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPAL+GTT FL GL++L +LPPL Sbjct: 134 RGWIEAIGHRDVPGRPALFGTTGHFLSDLGLRTLSELPPL 173 >gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitrosomonas europaea ATCC 19718] Length = 220 Score = 188 bits (478), Expect = 4e-47 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 24 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 83 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 84 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 142 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 143 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 182 >DUF387_SCPB_18-177_PF04079.5 Length = 160 Score = 188 bits (478), Expect = 5e-47 Identities = 77/160 (48%), Positives = 113/160 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 1 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 61 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ +LP L Sbjct: 121 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIKELPSL 160 >gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 187 bits (477), Expect = 6e-47 Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 172 >DUF387_Q83CP9_8-169_PF04079.5 Length = 162 Score = 187 bits (477), Expect = 6e-47 Identities = 79/162 (48%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 2 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + ++P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 62 QARPDFSPWLQRLWE-KKPARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 121 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 162 >gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 281 [Xylella fastidiosa Ann-1] Length = 254 Score = 187 bits (477), Expect = 6e-47 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCTERSVELVEVASGFRF 77 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 78 QLKADVHAWVSPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >DUF387_Q605S2_5-166_PF04079.5 Length = 162 Score = 187 bits (477), Expect = 7e-47 Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L P LEL +VA GYR Sbjct: 1 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 61 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 120 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 162 >gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia pseudomallei Pasteur] Length = 456 Score = 187 bits (476), Expect = 7e-47 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia fungorum LB400] Length = 408 Score = 187 bits (476), Expect = 7e-47 Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L +L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGELRKLFADGVSADTVRTLLEDLRQDWSGRGVELVGLASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRSYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT +FLD GLK+LD+LPPL Sbjct: 128 RNWIEVIGHRDVPGRPALYATTRQFLDDLGLKALDELPPL 167 >gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR00281 [Coxiella burnetii RSA 493] Length = 209 Score = 187 bits (476), Expect = 8e-47 Identities = 79/162 (48%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 9 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + ++P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 69 QARPDFSPWLQRLWE-KKPARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 128 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 169 >gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromobacterium violaceum ATCC 12472] Length = 210 Score = 187 bits (476), Expect = 8e-47 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 13 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 73 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 132 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 171 >DUF387_Q885L8_11-172_PF04079.5 Length = 162 Score = 187 bits (475), Expect = 9e-47 Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL E P EL EVA GYRL Sbjct: 2 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 62 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 121 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 162 >gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Bacillus subtilis subsp. subtilis str. 168] Length = 197 Score = 187 bits (475), Expect = 1e-46 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK ++A Y+++L++ LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L+ Sbjct: 70 STKKDFAPYLKKLIEVPS-KGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 129 AKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 169 >DUF387_Q88EG7_33-194_PF04079.5 Length = 162 Score = 187 bits (475), Expect = 1e-46 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 1 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV IKT Sbjct: 61 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 120 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 162 >gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 304 Score = 187 bits (475), Expect = 1e-46 Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 9 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV + IK + + Sbjct: 69 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 128 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 167 >DUF387_Q6SI35_7-166_PF04079.5 Length = 160 Score = 186 bits (474), Expect = 1e-46 Identities = 77/157 (49%), Positives = 101/157 (64%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 2 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 62 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 122 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLP 158 >gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylella fastidiosa 9a5c] Length = 327 Score = 186 bits (474), Expect = 1e-46 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRF 77 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 78 QLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >gi|70728992|ref|YP_258726.1| segregation and condensation protein B [Pseudomonas fluorescens Pf-5] Length = 343 Score = 186 bits (474), Expect = 1e-46 Identities = 84/162 (51%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P SLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQSLERLFELFEEAERPDPAVFKKALALLGKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIREKFAPWVGRLWE-ERPQRYSRAMLETMALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus casei ATCC 334] Length = 206 Score = 186 bits (474), Expect = 2e-46 Identities = 79/160 (49%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRLQ 60 +EA+L+ AGE ++L +LA +LEI GL+L + A Y L Sbjct: 5 LEAILYTAGESGVTLGELAGILEISESAMRQQLDAYRQRLAADDQRGLQLQQFADRYYLL 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKP YA +++ LS+AALE LAIIAY+QPITR EI+EIRGV S GA+ TL Sbjct: 65 TKPAYAPAIKKYFAGPPAAGLSQAALEVLAIIAYQQPITRIEIDEIRGVQSSGALTTLAA 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+E GR++ PGRP LY TT FLDYFGL L DLPPL Sbjct: 125 RQLIKEAGRKEAPGRPMLYATTQFFLDYFGLNRLADLPPL 164 >gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 281 [Burkholderia ambifaria AMMD] Length = 340 Score = 186 bits (473), Expect = 2e-46 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >DUF387_Q82TY6_23-182_PF04079.5 Length = 160 Score = 186 bits (473), Expect = 2e-46 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 2 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 62 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 121 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 160 >DUF387_Q7NSN3_12-171_PF04079.5 Length = 160 Score = 185 bits (472), Expect = 3e-46 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 2 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 62 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 121 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 160 >gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia cepacia R18194] Length = 343 Score = 185 bits (471), Expect = 3e-46 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregation and condensation protein ScpB [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 185 bits (471), Expect = 3e-46 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+LF + EPL ++L L E+ G+ L EVAGG++++ Sbjct: 10 ARLEAVLFSSDEPLRFDRLQALFEVETTVLRQALQELMVEYAQDNRGVVLQEVAGGFQIR 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA ++ +L R +LS+AA E+LAIIAYRQP+TRAEIE +RGV+S G ++ L+E Sbjct: 70 TRAEYAAWILKL-NKSRVTRLSKAATESLAIIAYRQPVTRAEIEYLRGVDSGGVVRMLME 128 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L++ VG++DVPGRP LYGT+ FL++FGLK L +LP L Sbjct: 129 KQLVKIVGKKDVPGRPLLYGTSRHFLEFFGLKDLSELPNL 168 >DUF387_Q8XZW0_8-167_PF04079.5 Length = 160 Score = 185 bits (471), Expect = 3e-46 Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 2 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV + IK + + Sbjct: 62 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 121 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 160 >gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 281 [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 185 bits (471), Expect = 3e-46 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E LLF+A PL++E++ + G+ L EVAGG++L+T Sbjct: 125 VVETLLFLAERPLTVEEMRAASGVDVERLEKALDKLSGHYREGPCGIVLHEVAGGWQLRT 184 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P+ +++ R LK +P +L+RAALETLAIIAYRQP+TR EIE+IRGV+ +K LLER Sbjct: 185 SPDNSDFARRFLK-VKPQRLTRAALETLAIIAYRQPVTRPEIEDIRGVDCGAVVKALLER 243 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L++ +G+++ PGRP LYGTT EFL++F LK L LP L Sbjct: 244 KLVKILGKKEEPGRPILYGTTREFLEFFALKDLASLPTL 282 >gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceanobacillus iheyensis HTE831] Length = 192 Score = 185 bits (470), Expect = 4e-46 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 8 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 68 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 128 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 168 >gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 281 [Burkholderia vietnamiensis G4] Length = 340 Score = 185 bits (470), Expect = 4e-46 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP +++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHFLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation and condensation protein ScpB [Dechloromonas aromatica RCB] Length = 178 Score = 185 bits (470), Expect = 4e-46 Identities = 76/160 (47%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EP++ + ++ + +EL+++A G+R +T Sbjct: 9 VLEAALLAAREPMTPSDMKKMFDEEFSSETLRKLLDQLREEWAERPVELIQLASGWRFRT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + EY Y+ERL ERPPK SRA LETLAIIAYRQP+TR +IEEIRGV + +KTL E Sbjct: 69 RAEYLPYIERL-NPERPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVAVNTNVVKTLEE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT +FLD GL+S+ +LPPL Sbjct: 128 RGWIDVVGHRDTPGRPALFATTKQFLDDLGLRSVSELPPL 167 >gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 281 [Burkholderia cenocepacia HI2424] Length = 345 Score = 185 bits (470), Expect = 4e-46 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 281 [Chromohalobacter salexigens DSM 3043] Length = 287 Score = 184 bits (469), Expect = 5e-46 Identities = 77/162 (47%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 + EA L AGEPL+ E+L L + P LELVE A G+++ Sbjct: 11 VCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQV 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + ++ ++ RL ERP + SRA LETLA+IAYRQP+TR +IEE+RGV+ S ++TL Sbjct: 71 RIRARFSPWISRLWD-ERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG I VG+RDVPGRP++Y TT FLD FGLK+LD LPP+ Sbjct: 130 TERGWIRVVGQRDVPGRPSVYATTRTFLDDFGLKTLDALPPM 171 >gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] Length = 333 Score = 184 bits (468), Expect = 6e-46 Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + G EL EVA GYRL Sbjct: 12 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV + +KTL Sbjct: 72 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 131 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 172 >gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pseudomonas fluorescens PfO-1] Length = 337 Score = 184 bits (468), Expect = 7e-46 Identities = 82/163 (50%), Positives = 106/163 (65%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +++EA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 11 SLLEAFLLASGKPQSLERLYELFEEGERPEPPVFKKALTLLGKSCEGRAFELKEVASGYR 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKT 117 LQ + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV + +KT Sbjct: 71 LQIREKFAPWVGRLWE-ERPQRYSRALLETMALIAYRQPITRGEIEDVRGVAVNTNIVKT 129 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 130 LMEREWIRIVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 281 [Methylobacillus flagellatus KT] Length = 184 Score = 184 bits (468), Expect = 7e-46 Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L AGEPLSLE L E +ELV+VA G+R Q Sbjct: 13 VLEAVLLTAGEPLSLEMLLRPFEGRMERATLRMLLDELRQEWQGRSMELVQVASGWRFQA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + + A ++ RL ERP + SRAALETLAIIAYRQP+TR +IEEIRGV + ++ LE Sbjct: 73 RADLAPFIARL-NPERPMRYSRAALETLAIIAYRQPVTRGDIEEIRGVAVNPNIMRQFLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R I+ VG+RDVPGRP+LY TT FLD GL+SL +LPP+ Sbjct: 132 RNWIDIVGQRDVPGRPSLYATTKTFLDDLGLRSLSELPPI 171 >gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus licheniformis ATCC 14580] Length = 197 Score = 183 bits (467), Expect = 1e-45 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L+ Sbjct: 70 STKKEFAVYLKKLIEAPS-KGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 129 AKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 169 >DUF387_Q8PK59_20-181_PF04079.5 Length = 162 Score = 183 bits (467), Expect = 1e-45 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 2 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 62 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 162 >DUF387_Q67NF6_8-166_PF04079.5 Length = 159 Score = 183 bits (466), Expect = 1e-45 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 2 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 62 RPEAAEYVERLLQPKSRG-LSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP Sbjct: 121 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPP 158 >gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pediococcus pentosaceus ATCC 25745] Length = 196 Score = 183 bits (466), Expect = 1e-45 Identities = 74/160 (46%), Positives = 97/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EALLFVAG E +S+E+L+ P L+L++ G Y+L Sbjct: 7 VEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE A +E+ LS AALE L+I+AYRQPITR EI++IRGV S ++ L+ Sbjct: 67 TKPELASILEKYFDRNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L++ VGR + PGRP YGTTDEFLDYFGL+ + DLP L Sbjct: 127 RNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDIKDLPKL 166 >gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Chloroflexus aurantiacus] Length = 209 Score = 183 bits (465), Expect = 2e-45 Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLFVA EP++L+QL +L++ G+ L + Sbjct: 40 LIEALLFVAAEPMTLDQLTRILDVEAAEVVNAIDELSTIYAQR--GIRLQRHNDHVMFVS 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 PE A + R L ++ +LS AALE LAIIAYRQPITRA+I+ IRGV+S A++ LL R Sbjct: 98 APEAAPTIRRFLGAQQNQRLSHAALENLAIIAYRQPITRAQIDAIRGVDSSAALRALLSR 157 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI E GR +V GRP LY TT FL FGL SLD+LPP+ Sbjct: 158 DLICEAGRLEVLGRPILYATTPTFLQQFGLTSLDELPPI 196 >DUF387_Q9HZ43_11-172_PF04079.5 Length = 162 Score = 183 bits (465), Expect = 2e-45 Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + G EL EVA GYRL Sbjct: 2 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV + +KTL Sbjct: 62 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 121 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 162 >DUF387_Q63TP4_8-167_PF04079.5 Length = 160 Score = 182 bits (464), Expect = 2e-45 Identities = 81/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 2 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV + +K L + Sbjct: 62 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 121 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 160 >gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 196 Score = 182 bits (464), Expect = 2e-45 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 12 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV IKTL Sbjct: 72 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 131 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 172 >gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 281 [Shewanella denitrificans OS-217] Length = 206 Score = 182 bits (464), Expect = 2e-45 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L + G++LV+VA GYR Sbjct: 15 LIEASLFVLAKPMTIKALKETVLADFDVSRKRIQEVIDELQQDYQERGVQLVKVASGYRF 74 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L E+ PK SRA LETLA+IAYRQP+TR +IE+IRGV S IK L Sbjct: 75 QTQELLSPYLQPLW-QEKAPKYSRATLETLAVIAYRQPVTRGDIEQIRGVAVSSHIIKNL 133 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG +DVPGRPALY TT++FL YFGL L DLP L Sbjct: 134 ADRHWIKSVGHKDVPGRPALYATTNDFLAYFGLTKLADLPQL 175 >gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clostridium tetani E88] Length = 189 Score = 182 bits (464), Expect = 2e-45 Identities = 74/155 (47%), Positives = 109/155 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 18 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 77 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 78 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ Sbjct: 138 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIK 172 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 182 bits (463), Expect = 2e-45 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 1 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 61 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 121 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 161 >DUF387_SCPB_10-169_PF04079.5 Length = 160 Score = 182 bits (463), Expect = 3e-45 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK ++A Y+++L++ LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L+ Sbjct: 61 STKKDFAPYLKKLIEVPS-KGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLV 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 120 AKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 160 >DUF387_Q9PAP3_17-178_PF04079.5 Length = 162 Score = 182 bits (463), Expect = 3e-45 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 2 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 62 QLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 162 >gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 281 [Clostridium thermocellum ATCC 27405] Length = 213 Score = 182 bits (462), Expect = 3e-45 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 I E +LF +G+ +S+E+L+ + I G+ + E+ GY+L Sbjct: 23 GIFEGMLFASGDKVSIEKLSSITGIDKKTVKLVINNMIVKYNNDPSRGITIREINNGYQL 82 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +KPEY +Y+++L + ++ LS+AALETLAIIAY +PIT+A+IE+IRGVNSD AI LL Sbjct: 83 CSKPEYYDYIKQLFEPKQRSGLSQAALETLAIIAYNRPITKAKIEQIRGVNSDSAITKLL 142 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 E+ LI E GR D PG+P LY TTDEF FG KS DLP Sbjct: 143 EKNLIREAGRLDAPGKPVLYETTDEFFRSFGFKSDADLP 181 >gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 199 Score = 181 bits (461), Expect = 4e-45 Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFV+G E +S++ ++ + L++ E YR Sbjct: 5 SQIEALLFVSGDEGISVKNMSIITGFDRSAIQGLLEELVLKYDTDLSSALQIRESDDVYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKPE V++ + LS+A LETL I+AY+QPITR EI+ IRGV S G ++ L Sbjct: 65 LVTKPELGGTVKQYFDSPVNATLSQAQLETLVIVAYKQPITRVEIDTIRGVQSSGTLQKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ EVGR+D PGRP ++GTTDEFLDYFGLKS+++LPPL Sbjct: 125 ALRQLVHEVGRKDEPGRPIMFGTTDEFLDYFGLKSIEELPPL 166 >gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rubrivivax gelatinosus PM1] Length = 261 Score = 181 bits (461), Expect = 5e-45 Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L +L L + G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLRELRTLFDDQLGPDTLRVLLDELARDWEDRGVELVAVANGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE EY++RL E+PP+ +RA LETLAIIAYRQP+TR +IE+IRGV +K L + Sbjct: 69 RPELREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSQLLKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G R+ PGRPAL+ TT +FLD GL +L+ LP L Sbjct: 128 RGWIEAIGHRETPGRPALFATTRQFLDDLGLATLEQLPAL 167 >gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 281 [Prosthecochloris vibrioformis DSM 265] Length = 208 Score = 181 bits (460), Expect = 5e-45 Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRLQ 60 IE+++F + E ++L+ + ++ + G + +AGGYR+ Sbjct: 5 IESVIFASEEAITLQVIRQVTGVEMDSAALQEVVEAINREYLESGRPFSIHRIAGGYRML 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+A + +LL + +LSR+ LE L+++AY QP+TR EI++IRGV+ D AI L+E Sbjct: 65 SREEFAPLLRKLLAPKIRRRLSRSILEVLSVVAYHQPVTRGEIQQIRGVSPDYAIDRLME 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE GR D PGRP YGTT EFLD F L SL DLP L Sbjct: 125 RGFIEVQGRADTPGRPLQYGTTKEFLDLFHLSSLKDLPKL 164 >gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 281 [Shewanella baltica OS155] Length = 198 Score = 181 bits (460), Expect = 5e-45 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS + L + L++ G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLDVLSPFLQPLW-QEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLPPL Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPPL 171 >gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator containing the HTH domain [Idiomarina loihiensis L2TR] Length = 190 Score = 181 bits (460), Expect = 5e-45 Identities = 77/162 (47%), Positives = 100/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 9 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 69 QTRAELGQRLAGLW-QEKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 128 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 169 >DUF387_Q73PC5_1-159_PF04079.5 Length = 159 Score = 180 bits (459), Expect = 8e-45 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 281 [Shewanella frigidimarina NCIMB 400] Length = 245 Score = 180 bits (458), Expect = 9e-45 Identities = 74/162 (45%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +PLS++ + E L + G++LV++A GYR Sbjct: 12 LIEASLFVLAKPLSVKAIKETVLADFSVSRTRIQETLDELQQDYQERGVQLVKIASGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + + P K SRA LETLA+IAYRQP+TR +IE IRGV S IK+L Sbjct: 72 QTQEILSPYLQPLWQEKSP-KYSRATLETLAVIAYRQPVTRGDIEYIRGVAISSHIIKSL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPG+PALY TT FLDYF L L DLP L Sbjct: 131 ADRQWIKVVGHKEVPGKPALYATTPAFLDYFNLTKLADLPAL 172 >gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR00281 [Enterococcus faecalis V583] Length = 201 Score = 180 bits (457), Expect = 1e-44 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 + IEA+LFV GE + LE+LA LLE L ++EV + Sbjct: 5 SQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFV 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L Sbjct: 65 LTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 125 VARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 166 >DUF387_Q5ZVJ4_11-172_PF04079.5 Length = 162 Score = 179 bits (456), Expect = 2e-44 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 2 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV IKTL Sbjct: 62 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 121 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 162 >gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewanella oneidensis MR-1] Length = 198 Score = 179 bits (455), Expect = 2e-44 Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLEVLSPFLQPLW-QEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 171 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 179 bits (455), Expect = 2e-44 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 + IEA+LFV GE + LE+LA LLE L ++EV + Sbjct: 1 SQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L Sbjct: 61 LTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 121 VARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 162 >DUF387_Q5QX76_8-169_PF04079.5 Length = 162 Score = 178 bits (454), Expect = 3e-44 Identities = 77/162 (47%), Positives = 100/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 2 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 62 QTRAELGQRLAGLW-QEKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 121 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 162 >gi|42526386|ref|NP_971484.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 171 Score = 178 bits (454), Expect = 3e-44 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >DUF387_Q7ZAN0_10-169_PF04079.5 Length = 160 Score = 178 bits (453), Expect = 4e-44 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 1 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 61 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 121 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 158 >DUF387_Q65HX2_10-169_PF04079.5 Length = 160 Score = 178 bits (452), Expect = 4e-44 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L+ Sbjct: 61 STKKEFAVYLKKLIEAPS-KGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLV 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 120 AKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 160 >gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 187 Score = 178 bits (452), Expect = 5e-44 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 10 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 70 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 130 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 167 >gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Bordetella parapertussis 12822] Length = 364 Score = 177 bits (451), Expect = 6e-44 Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E L A +P+ ++ +L GLELV++A G+R Sbjct: 11 VLETALLCASQPMQFAEMRKLFGDDQDIDNTALRAWLEALQAQWNERGLELVQLASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+IRGV S +K L Sbjct: 71 QSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 130 EDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 171 >gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xanthus] Length = 237 Score = 177 bits (451), Expect = 7e-44 Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 82 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 141 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L+ +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 142 DPHSGEYVRRYLR-VKPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 200 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 L++ +G+R+ GRP LYGT+ EFL++F LK L LP Sbjct: 201 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSALP 237 >gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Streptococcus mutans UA159] Length = 198 Score = 177 bits (451), Expect = 7e-44 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFVAGE LSL QLA LL+IP L L+E + Y+ Sbjct: 5 SKIEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 65 LVTKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 125 QAFDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELPD 165 >gi|20807774|ref|NP_622945.1| predicted transcriptional regulator containing the HTH domain [Thermoanaerobacter tengcongensis MB4] Length = 168 Score = 177 bits (451), Expect = 7e-44 Identities = 73/158 (46%), Positives = 92/158 (58%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF AG+ + + LAE LE+ G+++V + T Sbjct: 7 IEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTN 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 67 DSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYN 126 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 127 LIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 164 >gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 281 [Solibacter usitatus Ellin6076] Length = 308 Score = 177 bits (450), Expect = 7e-44 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+++VA EPL+L Q+A L+ PP G+ + EVAGGY++ Sbjct: 75 AVLEAIVYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMA 134 Query: 61 TKPEYAEYVERLLKTERPP-KLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE+ E V +K+ +PP KLS ALETLA+IAY+QP T EI EIRGV G KTLL Sbjct: 135 TKPEHHEAVRNFVKSLKPPLKLSLPALETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLL 194 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R LI GR++V G+P LY TT EFL FGLK L +LP L Sbjct: 195 DRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSL 235 >gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 281 [Rhodoferax ferrireducens DSM 15236] Length = 230 Score = 177 bits (450), Expect = 8e-44 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E L +PL L + L + G+ELV VA G+R Q+ Sbjct: 9 ILETALICTSQPLPLRDMRVLFDDRLGLDTLKVLLRELQQDWAQRGVELVNVASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA-IKTLLE 120 +PE E+++RL E+PP+ +RA LETLAIIAYRQP+TR +IE++RGV + IK L + Sbjct: 69 RPEMREFLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDVRGVTVNSLLIKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RG IE +G R+ GRPAL+ TT FLD GL+SLD LP Sbjct: 128 RGWIEVIGHRETVGRPALFATTKHFLDDLGLESLDQLP 165 >DUF387_Q7ZAJ6_10-171_PF04079.5 Length = 162 Score = 177 bits (450), Expect = 8e-44 Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 2 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 62 QTLEVLSPFLQPLW-QEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 121 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 162 >gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesorhizobium loti MAFF303099] Length = 229 Score = 177 bits (450), Expect = 9e-44 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A +P++ E LA ++ +LV VAGG++ T+ Sbjct: 44 VEATIFAASQPVTRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 100 Query: 63 PEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 101 PAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLRG 160 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 161 AGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 199 >DUF387_Q8KF54_10-171_PF04079.5 Length = 162 Score = 177 bits (449), Expect = 1e-43 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 3 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 63 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 123 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 162 >DUF387_SCPB_5-164_PF04079.5 Length = 160 Score = 177 bits (449), Expect = 1e-43 Identities = 73/158 (46%), Positives = 92/158 (58%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF AG+ + + LAE LE+ G+++V + T Sbjct: 3 IEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMCTN 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 63 DSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLEYN 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 123 LIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 160 >gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 281 [Chlorobium limicola DSM 245] Length = 221 Score = 177 bits (449), Expect = 1e-43 Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRLQ 60 IEA++F + E ++L + ++ G + +AGGYR Sbjct: 30 IEAVIFASEEAVTLSSIRQITGAEISLSQLDLLISALNDGYAASGLTFRIHRIAGGYRFL 89 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P + E ++R+ + KLS + LE L++IAY+QP+T+ EI+++RG D A+ LLE Sbjct: 90 TEPRFCELLKRIQAPKVRRKLSNSILEVLSVIAYKQPVTKGEIQQLRGTAPDYAVDRLLE 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I GR D PGRP YGTTD+FLD FGL SL DLP L Sbjct: 150 RGFITVYGRADSPGRPLQYGTTDDFLDLFGLHSLRDLPKL 189 >DUF387_Q7W9A9_10-171_PF04079.5 Length = 162 Score = 176 bits (448), Expect = 1e-43 Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E L A +P+ ++ +L GLELV++A G+R Sbjct: 2 VLETALLCASQPMQFAEMRKLFGDDQDIDNTALRAWLEALQAQWNERGLELVQLASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+IRGV S +K L Sbjct: 62 QSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 121 EDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 162 >gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Streptococcus thermophilus LMG 18311] Length = 193 Score = 176 bits (448), Expect = 1e-43 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 6 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 66 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 126 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 164 >DUF387_Q5M621_6-167_PF04079.5 Length = 162 Score = 176 bits (448), Expect = 1e-43 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 1 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 61 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 121 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 159 >gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation and condensation protein ScpB [Thermobifida fusca YX] Length = 193 Score = 176 bits (448), Expect = 2e-43 Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V +P+S +LA G +L EVA G+R T+ Sbjct: 17 LEAVLMVVDQPVSAYELARAFGTDVETVTRVLRETAREYTEQGRGFDLREVAEGWRFYTR 76 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PE AE VE L+ +L++AALETLA++AYRQP++R ++ IRGVN DG ++TL+ RG Sbjct: 77 PECAEAVEHFLRDGHEVRLTQAALETLAVVAYRQPVSRGKVSAIRGVNCDGVMRTLVLRG 136 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LIEE G+ G LY TT FL+ GL+SLD+LP L Sbjct: 137 LIEEAGQDPESG-AILYRTTSYFLERLGLRSLDELPDL 173 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 176 bits (447), Expect = 2e-43 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 + IEALLFVAGE LSL LA +L + P L L+E A YR Sbjct: 1 SQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ L Sbjct: 61 LVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 121 LAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 159 >gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Cytophaga hutchinsonii] Length = 237 Score = 175 bits (446), Expect = 2e-43 Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 6/162 (3%) Query: 3 IEALLFVAGEPLSLEQLAELL------EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 IE+++F A +P+ +++ + + EIP +++++ GG Sbjct: 8 IESIIFCATDPVKPDEIRQCMSEMFEAEIPLDDILNAVDDLLSKYEDETFPFQILQIGGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 Y+ TKP Y + LK + +LS +ALET+AI+AY+QPIT+A+IE+IRGVN D A++ Sbjct: 68 YQFMTKPAYQSSLGIFLKQKSKKRLSTSALETMAIVAYKQPITKAQIEQIRGVNCDYAMQ 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LLE+ L+E G+ D GRP LYGT+ +FL+YFG+ ++ DLP Sbjct: 128 KLLEKELVEIQGKSDGVGRPILYGTSQKFLEYFGINNIKDLP 169 >gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chlorobium tepidum TLS] Length = 209 Score = 175 bits (446), Expect = 2e-43 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 12 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 72 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 132 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 171 >gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Streptococcus pyogenes SSI-1] Length = 183 Score = 175 bits (446), Expect = 3e-43 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 + IEALLFVAGE LSL LA +L + P L L+E A YR Sbjct: 5 SQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ L Sbjct: 65 LVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 125 LAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 163 >gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 281 [Pelobacter propionicus DSM 2379] Length = 206 Score = 175 bits (445), Expect = 3e-43 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A++E+++F A PLSL++L ELL E G +LV +AGG++ Sbjct: 5 AVVESVIFSADTPLSLDKLCELLPEYERGAIRDVLRDLVSLHEVRNGGFQLVNIAGGWQF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T +YV R +K + K S+++LETLAI+AYRQP+TRAEIE +RGV+ G ++TLL Sbjct: 65 RTPSSLQQYVVRNVKAKS-AKFSQSSLETLAIVAYRQPVTRAEIEYLRGVDCGGVLRTLL 123 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER LI +G++D+PGRP +YGT+ EFL+ FGLK L LP L Sbjct: 124 ERKLIRILGKKDIPGRPLIYGTSREFLEVFGLKDLKSLPTL 164 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 175 bits (445), Expect = 3e-43 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFVAGE LSL QLA LL+IP L L+E + Y+ Sbjct: 1 SKIEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 61 LVTKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 121 QAFDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELPD 161 >DUF387_Q981I4_42-200_PF04079.5 Length = 159 Score = 175 bits (444), Expect = 4e-43 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A +P++ E LA ++ +LV VAGG++ T+ Sbjct: 3 VEATIFAASQPVTRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 59 Query: 63 PEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 60 PAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLRG 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 120 AGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 158 >gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 175 bits (444), Expect = 4e-43 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 9 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 69 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 129 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 169 >gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus gasseri] Length = 196 Score = 175 bits (444), Expect = 4e-43 Identities = 72/160 (45%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L + L +LLEI P GL+L+ + Y+ Sbjct: 6 AQLEALLYAAGDDGLETDNLLQLLEISPSALRELANHLKDRLKNDENSGLQLICINHTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSAECGDVISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVNGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 281 [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 174 bits (443), Expect = 5e-43 Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E + + ++LE + + +A GYR Sbjct: 12 IEAVIFASEEAVPASFICQVLESGVSAAEVDDAVNALNAFYTQSGRAFRIESIAEGYRFM 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T P A + ++L + KLS++ LE LA+IAY+QP++R++I+ IRGV+ D A+ LLE Sbjct: 72 TIPALAPLLRKMLAPKIRRKLSQSVLEVLAVIAYQQPVSRSDIQHIRGVSPDYAVNKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR G+P LYGTT EFLD+F L SL DLP L Sbjct: 132 RGLIDVRGRAASVGKPLLYGTTKEFLDFFHLSSLKDLPKL 171 >gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactococcus lactis subsp. cremoris SK11] Length = 188 Score = 174 bits (443), Expect = 5e-43 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ATCELLLFVSGEAGLTLTELSSLTEMSKQACQQQIDYLKEKYHSDRESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK +++E ++ KT LS++ALE L+IIAY+QP+TR EI+++RGVNS G + TL Sbjct: 65 MATKEDFSEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRIEIDQLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TT+ FLDY G+ +L++LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTEFFLDYIGINNLEELPEI 166 >DUF387_SCPB_6-167_PF04079.5 Length = 162 Score = 174 bits (443), Expect = 5e-43 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 1 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 61 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 121 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 160 >gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactobacillus johnsonii NCC 533] Length = 196 Score = 174 bits (443), Expect = 5e-43 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 6 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Streptococcus pneumoniae TIGR4] Length = 189 Score = 174 bits (443), Expect = 6e-43 Identities = 82/160 (51%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFVAGE + + QLAELL +PP L L+E +G YR Sbjct: 5 AKIEALLFVAGEDGIRVRQLAELLSLPPTGIQQSLGKLAQKYEKDPDSSLALIETSGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP++AE ++ K LSRAALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFAEILKEYSKAPINQSLSRAALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIKEDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 174 bits (442), Expect = 7e-43 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP ++E LA++LE P G EL +AGG+R T+ Sbjct: 24 LEAVLMVVDEPATVEHLAKILERPKRQIADALRELADEYTGQGRGFELRLIAGGWRFYTR 83 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P+YA VER + + +L++AALETLA++AYRQP++R+ + +RGVN DG ++TLL+RG Sbjct: 84 PKYATAVERFVLDGQQARLTQAALETLAVVAYRQPVSRSRVSAVRGVNCDGVMRTLLQRG 143 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 144 LVEEAGAEPETG-AILYRTTNYFLERMGLRGLDELPEL 180 >DUF387_Q5LQJ0_23-178_PF04079.5 Length = 156 Score = 173 bits (441), Expect = 9e-43 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 2 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 59 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 117 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 156 >gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lactococcus lactis subsp. lactis Il1403] Length = 188 Score = 173 bits (440), Expect = 1e-42 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 65 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 166 >gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesorhizobium loti MAFF303099] Length = 254 Score = 173 bits (440), Expect = 1e-42 Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 48 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 104 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R T + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 105 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 162 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT+ FLD+F L+ + DLP + Sbjct: 163 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGM 200 >gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 281 [Shewanella amazonensis SB2B] Length = 198 Score = 173 bits (440), Expect = 1e-42 Identities = 76/162 (46%), Positives = 97/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L G+ LV+VAGGYR Sbjct: 12 LIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 QT+ Y++ L E+ PK SRA LETLA+IAYRQP+TR +IE++RGV I KTL Sbjct: 72 QTQETLNPYLQTLW-QEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I VG ++VPGRPALY TT EFL YFGL +L LP L Sbjct: 131 SDRRWIRVVGHKEVPGRPALYATTSEFLAYFGLDNLASLPAL 172 >gi|56679084|gb|AAV95750.1| segregation and condensation protein B [Silicibacter pomeroyi DSS-3] Length = 218 Score = 173 bits (440), Expect = 1e-42 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 24 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 81 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 139 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 178 >DUF387_Q5WH04_9-169_PF04079.5 Length = 161 Score = 173 bits (440), Expect = 1e-42 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 1 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 61 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 121 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 161 >gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 281 [Polaromonas sp. JS666] Length = 244 Score = 173 bits (439), Expect = 1e-42 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L ++ L G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLREMGVLFNGVLTADSLKLVLEDLQNDWAGRGVELVHVATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLE 120 +P+ EY++RL E+PP+ +RA LETLAIIAYRQP+TR ++E+IRGV + I K L + Sbjct: 69 RPQMREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDMEDIRGVTINSMILKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G R+ GRPALY TT +FLD G++SLD LP + Sbjct: 128 RGWVEVIGHRETVGRPALYATTRQFLDDLGVESLDQLPAM 167 >gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [Kineococcus radiotolerans SRS30216] Length = 251 Score = 173 bits (439), Expect = 1e-42 Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L VA EP+ ++ LA P G EL EV GG+R+ Sbjct: 30 AALEAVLMVADEPVRVQALARATGEAPDEVDLLLRELAGEYAEQGRGFELREVGGGWRVY 89 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+A+ VE L + KL++AALETLAI+AYRQP++RA + +RGV+ DG ++TLL Sbjct: 90 SRAEHADVVEAFLLDGQTAKLTQAALETLAIVAYRQPVSRARVSAVRGVSVDGVMRTLLT 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ E G G LY TT+EFL GL L+DLPPL Sbjct: 150 RGLVCEAGVEATSGAT-LYRTTEEFLQRMGLDGLEDLPPL 188 >gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Parachlamydia sp. UWE25] Length = 234 Score = 173 bits (439), Expect = 2e-42 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 70 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 129 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 130 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 189 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L + Sbjct: 190 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKI 232 >gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Streptococcus suis 89/1591] Length = 189 Score = 173 bits (439), Expect = 2e-42 Identities = 78/161 (48%), Positives = 99/161 (61%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A IE LLFVAGE L+L LAE+LE+ P GL ++E + Y+ Sbjct: 5 AEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSEKYMADKASGLAILESSNRYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK EYA + KT +SRA LETL+I+AY+QPITR E+++IRGVNS GAI L Sbjct: 65 LVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQPITRIEVDDIRGVNSSGAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI E G+++V GRP LY TTD FLDY G+ SL++LP Sbjct: 125 QAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSLEELPD 165 >gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 281 [Sphingopyxis alaskensis RB2256] Length = 197 Score = 173 bits (439), Expect = 2e-42 Identities = 71/159 (44%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + EPL QLA L G+ELVE G + QT Sbjct: 9 IEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTP 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + A + R + + P KLSRAA E LAI+AY +P++RAEIE IRGV S G + L+E Sbjct: 69 ADLAHLLRR--ERDDPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEA 126 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I GRR+VPGRP +Y TTD FL +FGL S DLP + Sbjct: 127 EWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRKDLPGI 165 >DUF387_Q98LC4_45-200_PF04079.5 Length = 156 Score = 173 bits (439), Expect = 2e-42 Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 4 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 60 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R T + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 61 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT+ FLD+F L+ + DLP + Sbjct: 119 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGM 156 >DUF387_Q84FE4_81-236_PF04079.5 Length = 156 Score = 173 bits (439), Expect = 2e-42 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 2 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L+ +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 62 DPHSGEYVRRYLR-VKPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L++ +G+R+ GRP LYGT+ EFL++F LK L L Sbjct: 121 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSAL 156 >gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides DSM 266] Length = 202 Score = 172 bits (438), Expect = 2e-42 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRLQ 60 +EAL+F + E ++L + ++ G + ++AGGYR Sbjct: 13 VEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRFF 72 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+ +++L+ + ++S++ LE LA+IAY+QP+T+AEI ++RGV+ D ++ LLE Sbjct: 73 SESEFDALLKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLLE 132 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE GR D PG+P YGTT EFLD F L SL DLP L Sbjct: 133 RGFIEVRGRADSPGKPLQYGTTKEFLDLFSLFSLRDLPKL 172 >gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR00281 [Listeria monocytogenes str. 4b F2365] Length = 198 Score = 172 bits (438), Expect = 2e-42 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 8 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 68 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 128 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 169 >gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 226 Score = 172 bits (438), Expect = 2e-42 Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+++ L + P G+ +V+V + ++T Sbjct: 32 MVEAVLFASAEPVTVRDLIARM---PHGCRPSEALEHLRKRYEGRGVRVVQVGEAWAMRT 88 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 89 APDLGYLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I R+ PGRP + T FLD+FGL+S DLP L Sbjct: 147 MEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESARDLPGL 186 >gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] Length = 258 Score = 172 bits (437), Expect = 2e-42 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 58 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 117 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 118 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 177 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 178 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 215 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 172 bits (437), Expect = 2e-42 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 1 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 61 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 121 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 160 >gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus mitis] Length = 189 Score = 172 bits (437), Expect = 3e-42 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 5 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >DUF387_Q74C44_6-165_PF04079.5 Length = 160 Score = 172 bits (436), Expect = 3e-42 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 1 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 61 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 120 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 160 >gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 200 Score = 172 bits (436), Expect = 3e-42 Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A ++ALL+VAG+ + EQL +LL++ P GL+L+E+ Y+ Sbjct: 6 AQLQALLYVAGDGGIKKEQLRDLLQLADPEIESLAKRLQEKLASDPDCGLQLLEINDEYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E ++ VE + +S++ALE LAI+AYRQPITR EI+EIRGVNS GA++TL Sbjct: 66 LTTSWEVSDLVEAYFNKDLTKNISQSALEILAIVAYRQPITRIEIDEIRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGL++ G +D PG P LY TTD FL YFG KSL DLP Sbjct: 126 VWRGLVKAQGVKDAPGHPKLYVTTDYFLQYFGYKSLADLP 165 >gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Streptococcus agalactiae NEM316] Length = 194 Score = 172 bits (436), Expect = 4e-42 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 7 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 67 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 127 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 163 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 171 bits (435), Expect = 4e-42 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 1 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 61 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 121 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 162 >DUF387_Q5TXY6_13-173_PF04079.5 Length = 161 Score = 171 bits (434), Expect = 5e-42 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 2 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 62 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 121 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 161 >gi|56478941|ref|YP_160530.1| putative transcriptional regulator,helix-turn-helix type [Azoarcus sp. EbN1] Length = 197 Score = 171 bits (434), Expect = 6e-42 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A PL++ L +L + P G ELV+VA G+R QT Sbjct: 12 VVEAALLAASAPLAVADLRQLFDPDPGADFIRRVLEDLRADWSDRGAELVQVASGWRFQT 71 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+IRGV +KTL Sbjct: 72 RPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDIRGVAVSPNVLKTLES 130 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 131 RGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 170 >gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Novosphingobium aromaticivorans DSM 12444] Length = 215 Score = 171 bits (434), Expect = 6e-42 Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 7/159 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA LF A +PL+ ++++ L G+ LVE G + QT Sbjct: 11 VEATLFAAEQPLTEQEISAHLG----GVDLKRTLQHLSDLYADRGVHLVERGGRWHFQTA 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 P+ A + R + E P +LSRAA E LAIIAY +P++RAEIE IRGV + G + LLE Sbjct: 67 PDLAHLLRR--EKEEPRRLSRAATEALAIIAYHEPVSRAEIEAIRGVQTAKGTLDVLLEA 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I GRR+VPGRP +Y TT +FL +FGL+S DLP + Sbjct: 125 GWIRIAGRREVPGRPTIYATTPDFLSHFGLESRRDLPGI 163 >gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesorhizobium loti MAFF303099] Length = 225 Score = 171 bits (434), Expect = 6e-42 Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVPREVLARVVSKS---CNLDLVIDDIRAELAGRPYELVSVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 TK + + + T + +LS++ L IAY QPITR E+ G S I Sbjct: 92 TKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGV 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL++L LP Sbjct: 152 LRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPD 193 >gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 231 Score = 171 bits (434), Expect = 6e-42 Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A EP+ E LA+++ +LV VAGG++ T+ Sbjct: 38 VEATIFAASEPVGRETLAKIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 94 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + E+ L+++ + L I Y QPITR E+ G S I L Sbjct: 95 PAYADAIRTAVGGGEKATNLTQSEVLVLMCIGYFQPITRGELSSFFGKEVSRDLIGHLRG 154 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI R PG P Y TT EFL FGL +L DLP Sbjct: 155 AKLIASGPRSPTPGAPYTYVTTKEFLLEFGLDTLRDLPD 193 >DUF387_Q98P19_35-194_PF04079.5 Length = 160 Score = 171 bits (434), Expect = 6e-42 Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVPREVLARVVSKS---CNLDLVIDDIRAELAGRPYELVSVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 TK + + + T + +LS++ L IAY QPITR E+ G S I Sbjct: 58 TKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGV 117 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL++L LP Sbjct: 118 LRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPD 159 >DUF387_O52287_40-199_PF04079.5 Length = 160 Score = 170 bits (433), Expect = 8e-42 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 3 VEAVIFASAEPVSRETLARVVGKE---CSIDLLIDDLREDLQGRPYELVSVAGGWQHRTR 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALE--TLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +A+ ++ R + E L + Y QPITR E+ +I G S + L Sbjct: 60 PRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNLR 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL F +++L DLP + Sbjct: 120 GAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNI 160 >gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00281 [Geobacter sulfurreducens PCA] Length = 195 Score = 170 bits (433), Expect = 8e-42 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 6 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 66 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 165 >DUF387_Q98A15_35-195_PF04079.5 Length = 161 Score = 170 bits (433), Expect = 8e-42 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVPREMLARVVGKN---CNLDLVIDDIRTELAGRPYELVSVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKTERP---PKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + + +LS++ L IAY QPITR E+ G S I Sbjct: 58 TKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 117 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 118 VLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPD 160 >gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] Length = 197 Score = 170 bits (433), Expect = 9e-42 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE +LFV G E ++LE+L +LLE+ GL + EVA +RL Sbjct: 8 AAIEGILFVRGDEGVTLEELCDLLELSTDVVYAALEELRLSYTDEARGLRIEEVAHAFRL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+RGV S+ AI+TL Sbjct: 68 STKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEVRGVKSEKAIQTLT 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 128 SRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 168 >gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [Thermus thermophilus HB27] Length = 177 Score = 170 bits (432), Expect = 9e-42 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 5 ALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPE 64 A+LF AG P++L++L L P G+ L VAGG+RL P+ Sbjct: 13 AVLFAAGRPVALKEL-RALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPK 71 Query: 65 YAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLI 124 E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLERGL+ Sbjct: 72 ALEAVERVLKP-SPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLV 130 Query: 125 EEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 131 RVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 166 >DUF387_Q5SK60_9-166_PF04079.5 Length = 158 Score = 170 bits (432), Expect = 1e-41 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 5 ALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPE 64 A+LF AG P++L++L L P G+ L VAGG+RL P+ Sbjct: 5 AVLFAAGRPVALKEL-RALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPK 63 Query: 65 YAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLI 124 E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLERGL+ Sbjct: 64 ALEAVERVLKP-SPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLV 122 Query: 125 EEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 123 RVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 158 >gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesorhizobium loti MAFF303099] Length = 240 Score = 170 bits (432), Expect = 1e-41 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVPREMLARVVGKN---CNLDLVIDDIRTELAGRPYELVSVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKTERP---PKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + + +LS++ L IAY QPITR E+ G S I Sbjct: 92 TKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 151 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 152 VLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPD 194 >gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodobacter sphaeroides 2.4.1] Length = 211 Score = 170 bits (432), Expect = 1e-41 Identities = 63/160 (39%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+++ +L L P G++L V + +T Sbjct: 21 MVEAILFASADPVTVAELQARL---PHGCDPAEALTHLRRRYEGRGVQLARVGDAWAFRT 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + +T KLSRAA+ETLAI+AY QP+TRAEIEEIRGV S G I LLE Sbjct: 78 AADLGFLMRK--ETVEQKKLSRAAIETLAIVAYHQPVTRAEIEEIRGVAVSRGTIDQLLE 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T+ FLD+FGL+S DLP + Sbjct: 136 LEWIRFGRRRMTPGRPVTFVVTESFLDHFGLESARDLPGI 175 >gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae str. PEST] Length = 188 Score = 170 bits (431), Expect = 1e-41 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 14 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 73 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 74 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 132 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 133 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 173 >gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti] Length = 231 Score = 170 bits (431), Expect = 1e-41 Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP++ LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + T E +LS+A L IAY QPITR E+ G S I Sbjct: 92 TKKIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 151 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 152 VLRGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLPE 194 >gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Acinetobacter sp. ADP1] Length = 196 Score = 170 bits (431), Expect = 1e-41 Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + P+SL +L E + +EL+E A G+R Q + Sbjct: 22 IEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQVR 81 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLER 121 +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV N+ ++ L E Sbjct: 82 SKYRNMIAQVW-PERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFEW 140 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 141 NWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 179 >DUF387_SCPB_8-169_PF04079.5 Length = 162 Score = 170 bits (431), Expect = 1e-41 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 1 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 61 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 121 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 162 >gi|28378542|ref|NP_785434.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] Length = 199 Score = 170 bits (431), Expect = 1e-41 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 7 IEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRLA 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 67 TKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLVL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 127 RQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 166 >gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [Enterococcus faecium DO] Length = 189 Score = 170 bits (431), Expect = 1e-41 Identities = 76/159 (47%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRLQ 60 +EALLF+ GE +S E+L+ LL + L + E Y L Sbjct: 7 LEALLFIVGEEGISNEELSGLLNLSEAEVTSLVKELKESYTQNSHSALHIFETESHYVLT 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E A ++R + LS+AA+ETLAIIAY+QPITRAEIE+IRGV GA++ L Sbjct: 67 TKKELAPLLKRYAQGTSNT-LSQAAVETLAIIAYKQPITRAEIEQIRGVQVSGAVQRLAA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LIEE GR + PGRP LYGTT FLDYFGLKSL++LP Sbjct: 126 HKLIEEKGRVEGPGRPILYGTTGYFLDYFGLKSLEELPD 164 >gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodospirillum rubrum] Length = 239 Score = 169 bits (430), Expect = 2e-41 Identities = 76/158 (48%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLF A PLS+ LA L P G+ LVE G + +T Sbjct: 23 LIEALLFAAPTPLSVADLASRL---PAGADVAALLGALADHYRQRGVVLVESGGRWAFRT 79 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + L+T P +LSRAA+ETLAIIAY QP+TRA+IEEIRGV S G + LLE Sbjct: 80 AADLAGQLR--LETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLE 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I GRR GRP +GTT+ FLD+FGL S+DDLP Sbjct: 138 AGWIHPCGRRQTAGRPLTWGTTEGFLDHFGLGSVDDLP 175 >gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 229 Score = 169 bits (430), Expect = 2e-41 Identities = 55/159 (34%), Positives = 73/159 (45%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F A EP+ E LA ++ +LV VAGG++ T+ Sbjct: 38 VEATIFAASEPVGRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLTR 94 Query: 63 PEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + +ER L+ + + L IAY QPITR E+ G S I L Sbjct: 95 PAYADVIRTAVGRSERAVDLTLSEVLVLMCIAYFQPITRGELSSFFGKEISRDLIGNLRS 154 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I R PG P Y TT EFL FGL +L DLP Sbjct: 155 HGFIASGPRAPQPGAPYTYVTTKEFLLEFGLDTLHDLPD 193 >DUF387_Q5NZ85_11-170_PF04079.5 Length = 160 Score = 169 bits (430), Expect = 2e-41 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A PL++ L +L + P G ELV+VA G+R QT Sbjct: 2 VVEAALLAASAPLAVADLRQLFDPDPGADFIRRVLEDLRADWSDRGAELVQVASGWRFQT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+IRGV +KTL Sbjct: 62 RPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDIRGVAVSPNVLKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 121 RGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 160 >gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 281 [Jannaschia sp. CCS1] Length = 228 Score = 169 bits (430), Expect = 2e-41 Identities = 65/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + +P+SL ++ + P G+++ +V + +T Sbjct: 24 MVEALLFASADPVSLAEMEARM---PHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + R KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I L+E Sbjct: 81 AADLGFLMAR--DQVEQRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+ RR PGRP Y T FLD+FGL+S DLP L Sbjct: 139 LDWIKFGRRRMTPGRPVTYVVTQLFLDHFGLESARDLPGL 178 >gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] Length = 226 Score = 169 bits (429), Expect = 2e-41 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 42 VEAVIFASAEPVSRETLARVVGKE---CSIDLLIDDLREDLQGRPYELVSVAGGWQHRTR 98 Query: 63 PEYAEYVERLLKTERPPKLSRAALE--TLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +A+ ++ R + E L + Y QPITR E+ +I G S + L Sbjct: 99 PRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNLR 158 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL F +++L DLP + Sbjct: 159 GAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNI 199 >gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 281 [Frankia sp. CcI3] Length = 191 Score = 169 bits (429), Expect = 2e-41 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA +P+ + +LA L P G L GG+R Sbjct: 17 ALLEAVLMVAEKPVGVAELATGLGAPALEVERLLAQLAEQYVRDGRGFRLRHTGGGWRFY 76 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLA++AY+QP++R I +RGV++DG I+TL Sbjct: 77 TADECAPWVERFVLAGQSARLSQAALETLAVVAYQQPVSRGRISAVRGVSADGVIRTLTA 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGL+EEVG G LYGTTD FL+ GL+ LD+ Sbjct: 137 RGLVEEVGHDPETG-AILYGTTDYFLERMGLRGLDE 171 >gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesorhizobium loti MAFF303099] Length = 233 Score = 169 bits (429), Expect = 3e-41 Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F AGEP+S E L ++ +LV VAGG+R T+ Sbjct: 42 VEATIFAAGEPISREVLTRIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLTR 98 Query: 63 PEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 99 PAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRS 158 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT FL FGL++L DLP Sbjct: 159 FGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 197 >gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 281 [Syntrophomonas wolfei str. Goettingen] Length = 171 Score = 168 bits (428), Expect = 3e-41 Identities = 75/161 (46%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRL 59 A +EA+LFV + +++L E+L+IP G L++VE+ GGY L Sbjct: 9 AAVEAVLFVRAGRVGMDELVEILDIPLLELKEILQEMILEYNNNIRGGLQIVELDGGYLL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+P Y++ + R ++ + +LS AAL+TLAI+AYRQPITR EIE+IRGV SD + TLL Sbjct: 69 CTRPAYSDILAR-MEKPQKKRLSAAALDTLAIVAYRQPITRLEIEQIRGVKSDRIVNTLL 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+GLI+E G + V G+P LY TT+EFL FGL +L +LP L Sbjct: 128 EKGLIQEAGHKAVLGKPILYATTEEFLKVFGLTNLKELPDL 168 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 168 bits (428), Expect = 3e-41 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE +LFV G E ++LE+L +LLE+ GL + EVA +RL Sbjct: 1 AAIEGILFVRGDEGVTLEELCDLLELSTDVVYAALEELRLSYTDEARGLRIEEVAHAFRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+RGV S+ AI+TL Sbjct: 61 STKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEVRGVKSEKAIQTLT 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 121 SRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 161 >gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 281 [Nocardioides sp. JS614] Length = 259 Score = 168 bits (428), Expect = 3e-41 Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EALL +A +P+ LA P G EL V GG+R T+ Sbjct: 45 LEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGGWRYYTR 104 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EYA VE + + +L++AALETLA++AY+QP++RA + IRGVN DG ++TLL RG Sbjct: 105 DEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRG 164 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT FL+ G+ SLDDLP L Sbjct: 165 LVEEAGHDHETG-ANLYRTTTYFLERIGVTSLDDLPEL 201 >DUF387_Q8KGW4_35-195_PF04079.5 Length = 161 Score = 168 bits (428), Expect = 3e-41 Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP++ LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + T E +LS+A L IAY QPITR E+ G S I Sbjct: 58 TKKIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 117 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 118 VLRGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLPE 160 >gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 223 Score = 168 bits (427), Expect = 3e-41 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 30 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 89 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 90 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 149 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 150 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 186 >DUF387_Q9F5B4_43-202_PF04079.5 Length = 160 Score = 168 bits (427), Expect = 4e-41 Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 3 IEAVIFASAEPVSRETLARVVGKD---CSIDLLIDDLVEELRDRPYELVSVAGGWQHRTR 59 Query: 63 PEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +AE + R LS L + Y QPITR E+ +I G S + L Sbjct: 60 PRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNLR 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL FG+++L DLP + Sbjct: 120 GAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLPNI 160 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 168 bits (427), Expect = 4e-41 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 3 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 63 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 123 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 159 >gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] Length = 233 Score = 168 bits (427), Expect = 4e-41 Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA++F + EP+S E LA ++ ELV VAGG++ +T+ Sbjct: 45 IEAVIFASAEPVSRETLARVVGKD---CSIDLLIDDLVEELRDRPYELVSVAGGWQHRTR 101 Query: 63 PEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 P +AE + R LS L + Y QPITR E+ +I G S + L Sbjct: 102 PRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNLR 161 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL FG+++L DLP + Sbjct: 162 GAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLPNI 202 >gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 245 Score = 168 bits (427), Expect = 4e-41 Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 9/163 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EP+S + LA ++ +LV VAGG+R T+ Sbjct: 44 VEAVIFAASEPVSRQVLARIVGES---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLTR 100 Query: 63 PEYAEYVERLLKTE-----RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 P YA+ + T L+++ + L IAY QPITRAE+ G S I Sbjct: 101 PAYADAIRSAFGTTVGGSGGAGDLTQSEVLVLMCIAYFQPITRAELSSFFGKEISRDLIA 160 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L G+I R PG P Y TT FL FGL +L DLP Sbjct: 161 HLRGAGMIASGPRSPTPGAPYTYVTTKAFLLEFGLDTLRDLPD 203 >DUF387_Q6FDU6_20-179_PF04079.5 Length = 160 Score = 168 bits (427), Expect = 4e-41 Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + P+SL +L E + +EL+E A G+R Q + Sbjct: 3 IEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQVR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLER 121 +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV N+ ++ L E Sbjct: 63 SKYRNMIAQVW-PERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFEW 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 122 NWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 160 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 168 bits (426), Expect = 5e-41 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 3 IEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRLA 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 63 TKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLVL 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 123 RQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 162 >gi|61102014|ref|ZP_00377468.1| segregation and condensation protein B [Erythrobacter litoralis HTCC2594] Length = 230 Score = 168 bits (426), Expect = 5e-41 Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA LF + +P+ +E LA L G+ LVE + + QT Sbjct: 12 IEATLFASEDPMGVESLATHLG-DAAASDVRDALKNLAKHYEERGVHLVERSRRWHFQTA 70 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 P+ A + R + E+ +LSRAA E LAI+AY +P++RAEIE IRGV + G + L+E Sbjct: 71 PDLAHLLRR--EKEQVRRLSRAATEVLAIVAYHEPVSRAEIEAIRGVQTAKGTLDVLMEA 128 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR+VPGRP +Y TT EFL +FGL S DLP L Sbjct: 129 GWVRAAGRREVPGRPVIYATTPEFLQHFGLASRKDLPGL 167 >DUF387_Q981J7_40-198_PF04079.5 Length = 159 Score = 168 bits (426), Expect = 5e-41 Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA +F AGEP+S E L ++ +LV VAGG+R T+ Sbjct: 3 VEATIFAAGEPISREVLTRIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLTR 59 Query: 63 PEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 60 PAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRS 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT FL FGL++L DLP Sbjct: 120 FGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 158 >DUF387_Q9S231_28-186_PF04079.5 Length = 159 Score = 168 bits (426), Expect = 6e-41 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 3 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 63 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 123 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 159 >DUF387_Q6LBD4_2-160_PF04079.5 Length = 159 Score = 167 bits (425), Expect = 6e-41 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F + EP++ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFASPEPVTREILARVVGGD---CNIDLIIDDIRDELRGRPYELVAVAGGWQHR 57 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +A + ++ LS+ L IAY QPITR E+ + G S I L Sbjct: 58 TRKVFATAIRTATGLGDQVRPLSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 118 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 159 >gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lactobacillus acidophilus NCFM] Length = 197 Score = 167 bits (424), Expect = 8e-41 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 22/170 (12%) Query: 1 AIIEALLFVAGE------------PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGL 48 A +EALL+ AG+ ++ E+L+E+ + G+ Sbjct: 6 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADE----------LEKKLSTDTNSGI 55 Query: 49 ELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG 108 +++ +A Y+L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRG Sbjct: 56 QIIHIAHTYKLTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRG 115 Query: 109 VNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 VNS GA++TL+ RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 116 VNSSGALQTLIWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 165 >gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Oenococcus oeni PSU-1] Length = 196 Score = 167 bits (424), Expect = 8e-41 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A + +L+FV+G+ + L+ ++++ ++LVE YR Sbjct: 8 AQLFSLVFVSGDDGIDLQSISKITGFDRSAVQIDLESLSNRLEEDQQNPIKLVENDQVYR 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK ++A +++ +T LS+A+LETL IIAY+QP+TR E+++IRGVNS GAI L Sbjct: 68 LVTKSKFAPLLKKYYQTPVANSLSKASLETLTIIAYKQPVTRIEVDKIRGVNSSGAISRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LI+E GR+ GRP LY TT+ FLDYFGLK +DDLP L Sbjct: 128 VSRELIQESGRKAEVGRPLLYTTTNFFLDYFGLKKIDDLPEL 169 >DUF387_Q5FKG0_6-167_PF04079.5 Length = 162 Score = 167 bits (424), Expect = 8e-41 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 22/170 (12%) Query: 1 AIIEALLFVAGE------------PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGL 48 A +EALL+ AG+ ++ E+L+E+ + G+ Sbjct: 1 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADE----------LEKKLSTDTNSGI 50 Query: 49 ELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG 108 +++ +A Y+L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRG Sbjct: 51 QIIHIAHTYKLTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRG 110 Query: 109 VNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 VNS GA++TL+ RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 111 VNSSGALQTLIWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 160 >DUF387_Q89KZ6_34-189_PF04079.5 Length = 156 Score = 166 bits (422), Expect = 2e-40 Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV VA + +T Sbjct: 2 LLEALLFASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + A + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE Sbjct: 59 AGDLAWLMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 117 TGWIKPRGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 156 >DUF387_Q6MER5_69-232_PF04079.5 Length = 164 Score = 166 bits (421), Expect = 2e-40 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 2 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 61 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 62 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 121 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L + Sbjct: 122 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKI 164 >gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Oligotropha carboxidovorans] Length = 194 Score = 165 bits (420), Expect = 2e-40 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F + EP++ E LA ++ ELV VAGG++ + Sbjct: 2 GRVEAVIFASPEPVTREILARVVGGD---CNIDLIIDDIRDELRGRPYELVAVAGGWQHR 58 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +A + ++ LS+ L IAY QPITR E+ + G S I L Sbjct: 59 TRKVFATAIRTATGLGDQVRPLSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 119 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 160 >gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 281 [Paracoccus denitrificans PD1222] Length = 221 Score = 165 bits (418), Expect = 4e-40 Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+S ++A L P G++L V + +T Sbjct: 25 MVEAILFASAEPMSQREIAARL---PAGCDVGEAVQALRARYEGRGVQLARVGDAWAFRT 81 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + ++ + R +LSRAA ETLAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 82 AADLGFLMQESVVESR--RLSRAATETLAIIAYHQPVTRAEIEEIRGVAVSRGTLDQLIE 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + RR PGRP + T+ FLD+FGL+S DLP L Sbjct: 140 LDWVRIGRRRQTPGRPVTFVVTEAFLDHFGLESARDLPGL 179 >gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides BS1] Length = 201 Score = 165 bits (418), Expect = 4e-40 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E +S + + ++L E+ + +AGG+R Sbjct: 12 IEAVIFASDEAVSAQIILQVLAEELSAEDIDAGVESLNASYASTGRSFRIARIAGGFRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T ++++L + KLS++ LE LA+IAY+QP TR EI+++RGV+ D AI LLE Sbjct: 72 TLGMLEPTLKKMLAPKIQRKLSQSVLEVLAVIAYQQPATRGEIQQVRGVSPDYAINKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR + PG+P +YGTT EFLD+F + SL DLP L Sbjct: 132 RGLIDVRGRAEKPGKPLIYGTTKEFLDFFNITSLKDLPKL 171 >DUF387_Q6N5X0_36-191_PF04079.5 Length = 156 Score = 165 bits (418), Expect = 5e-40 Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV +A + +T Sbjct: 2 LLEALLFASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE Sbjct: 59 ASDLAWLMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G ++ GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 117 TGWVKPRGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 156 >DUF387_SCPB_106-268_PF04079.5 Length = 163 Score = 164 bits (417), Expect = 5e-40 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 1 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 61 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 121 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 163 >gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Mycoplasma gallisepticum R] Length = 291 Score = 164 bits (417), Expect = 5e-40 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 106 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 165 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 166 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 225 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 226 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 268 >gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdellovibrio bacteriovorus HD100] Length = 488 Score = 164 bits (416), Expect = 7e-40 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE---IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L + I G+ L EV GGY Sbjct: 104 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 163 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 164 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 222 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 223 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 265 >gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 208 Score = 164 bits (416), Expect = 7e-40 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 24 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 83 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 84 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 143 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 144 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPK 185 >gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 232 Score = 164 bits (416), Expect = 8e-40 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 29 GRVEAVIFAAPEPVPREVLARVVG---RACNLDLIVDDIRDELRGRPYELVSVAGGWQHR 85 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +AE + ++ LS+A L IAY QPITR E+ G S I L Sbjct: 86 TRKGFAEAIRAATGLGDQVRPLSQAESLILLCIAYYQPITRGELGRFFGQEVSRDLIGYL 145 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 146 RRLGFIASGPRAPQPGAPYTYVTTNGFLSHFGFATLRDLPDM 187 >DUF387_O05669_30-188_PF04079.5 Length = 159 Score = 163 bits (415), Expect = 1e-39 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 2 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 159 >gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifidobacterium longum NCC2705] Length = 238 Score = 163 bits (414), Expect = 1e-39 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX------GLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 52 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 111 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 112 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 171 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G D R AL T++ FLD GLKSLD+LP L Sbjct: 172 IRSLTVRGLIKEDG-VDPESRAALLVTSEFFLDQMGLKSLDELPSL 216 >gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycobacterium tuberculosis H37Rv] Length = 231 Score = 163 bits (413), Expect = 2e-39 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 31 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 90 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 91 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 150 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G + TT+ FL+ GL SL +LP + Sbjct: 151 GLITEVGTDADTG-AVTFATTELFLERLGLTSLSELPDI 188 >gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 281 [Geobacter metallireducens GS-15] Length = 195 Score = 162 bits (411), Expect = 3e-39 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +I+E+LLFVA P++ ++L L E G+ LVEVA GY+ Sbjct: 6 SIVESLLFVADAPMTFDRLCSFLDEFDRGDIREALGALQEEYGQEGRGVVLVEVASGYQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T E A+Y+ RL KT RP K S++ALETLAIIAYRQP+TRAEIE +RGV+ G +KT+L Sbjct: 66 RTPVENADYLRRLTKT-RPVKFSQSALETLAIIAYRQPVTRAEIEYLRGVDCGGVLKTIL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G++D+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKKDIPGKPLIYGTTREFLELFSLKDLRSLPTL 165 >gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 235 Score = 162 bits (410), Expect = 3e-39 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 34 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 93 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 94 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 153 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 154 RGLITEAGVDEDTGAT-TFATTDLFLERLGLTSLADLPDI 192 >DUF387_SCPB_24-186_PF04079.5 Length = 163 Score = 162 bits (410), Expect = 3e-39 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 1 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 61 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 121 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPK 162 >gi|73662567|ref|YP_301348.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 182 Score = 161 bits (409), Expect = 5e-39 Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EALL+ AG E L +QL E+LEI P GL + Y L Sbjct: 7 GILEALLYTAGDEGLDQQQLLEILEIEPTTLTELIEAYDSP------GLTIQHYGNTYVL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E ++Y+E+L++ + KLS+AA+E+L+IIAY QP++R++IE IRG+NSDGA+KTL+ Sbjct: 61 TTKKEASDYIEQLIEQKSKMKLSQAAMESLSIIAYNQPLSRSDIELIRGINSDGAVKTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E + + R TT+ FL+ FG++ LDDLP Sbjct: 121 ARGLVEA--KEEADSRSHQLYTTELFLNVFGIEHLDDLP 157 >gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 187 Score = 160 bits (407), Expect = 7e-39 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V P+ LA + + G +L E GG+RL Sbjct: 15 SRIESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLY 74 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 75 TRPDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQM 134 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ EV G Y TT FL+ G+ SLD LP L Sbjct: 135 RGLVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 173 >gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Brevibacterium linens BL2] Length = 210 Score = 160 bits (407), Expect = 8e-39 Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX----GLELVEVAGG 56 A IEA+L ++ +S+ +LA L + G E+ VAGG Sbjct: 8 AGIEAVLMISDSAVSVTELATALGLDEDTVTDAIAELKADYDGGEDRRQRGFEIRLVAGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 +R+ ++ +Y E V+ L + + KLS+AALETLA+IAYRQPI+R I IRGV+ DG I+ Sbjct: 68 FRIFSRGDYHEIVKDFLTSGQSAKLSQAALETLAVIAYRQPISRPRIAAIRGVSVDGVIR 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TLL RGLI E G ++ LY TT +FLD G+ S+DDLP + Sbjct: 128 TLLLRGLIVEAG-KEATTSALLYTTTHQFLDALGMNSIDDLPEI 170 >gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 281 [Frankia sp. EAN1pec] Length = 214 Score = 160 bits (407), Expect = 8e-39 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA P+ + + A L+IP G L V G+RL Sbjct: 64 ALVEAVLTVAENPVGVAEFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLY 123 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLAI+AY+QP++R I +RGV++DG I+TL Sbjct: 124 TADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPVSRGRISAVRGVSADGVIRTLTA 183 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 R L+EE G G LY TTD FL+ GL+ Sbjct: 184 RNLVEECGHDHESG-AILYRTTDYFLERMGLR 214 >gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregation and condensation protein ScpB [Exiguobacterium sp. 255-15] Length = 190 Score = 160 bits (407), Expect = 9e-39 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IIE+LLFV G+ + L+++LEI L++VE G +++ Sbjct: 6 IIESLLFVVGDDGIDPRGLSQVLEISEAAAREQLHALQTTFEAEERVLQIVESGGVFKMV 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ E + YV+ + LSRAA+ETL IIAY+QP+TRA+IE IRGV ++ I TL Sbjct: 66 TRKEMSPYVQAYAGSLAEDSLSRAAMETLVIIAYKQPVTRADIEVIRGVKTERVIHTLSA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 +GLI+E GR GR LY TTD FLD+FGL S+ Sbjct: 126 KGLIDEAGRAKGVGRAKLYKTTDHFLDHFGLNSI 159 >DUF387_Q6MLN0_104-265_PF04079.5 Length = 162 Score = 160 bits (406), Expect = 9e-39 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE---IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L + I G+ L EV GGY Sbjct: 1 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 61 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 120 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 162 >DUF387_Q5YY85_27-185_PF04079.5 Length = 159 Score = 160 bits (406), Expect = 9e-39 Identities = 72/160 (45%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA+L V P +EQLA L+ G++L V G+R Sbjct: 1 SALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL Sbjct: 61 TRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G D LY TT+ FL+ GL SL DLPPL Sbjct: 121 RGLIAEAG-VDPETNGTLYRTTELFLERIGLASLSDLPPL 159 >DUF387_Q7ZAN2_15-173_PF04079.5 Length = 159 Score = 160 bits (406), Expect = 1e-38 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V P+ LA + + G +L E GG+RL Sbjct: 1 SRIESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 61 TRPDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQM 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ EV G Y TT FL+ G+ SLD LP L Sbjct: 121 RGLVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 159 >DUF387_O33209_30-188_PF04079.5 Length = 159 Score = 160 bits (405), Expect = 1e-38 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 2 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G + TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGTDADTG-AVTFATTELFLERLGLTSLSELPDI 159 >gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 540 Score = 160 bits (405), Expect = 1e-38 Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 1/159 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L +A PL+ +LA L ++ G+ + +VAGG R+ T Sbjct: 167 IEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRMMT 226 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L++ Sbjct: 227 RSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLMQL 286 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 287 DLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 325 >DUF387_SCPB_4-165_PF04079.5 Length = 162 Score = 160 bits (405), Expect = 1e-38 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 2 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 62 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 122 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 162 >gi|47459311|ref|YP_016173.1| predicted transcriptional regulator [Mycoplasma mobile 163K] Length = 192 Score = 160 bits (405), Expect = 1e-38 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 5 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 65 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 125 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 165 >DUF387_Q8G4K8_52-216_PF04079.5 Length = 165 Score = 159 bits (404), Expect = 2e-38 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX------GLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 1 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 60 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 61 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 120 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G D R AL T++ FLD GLKSLD+LP L Sbjct: 121 IRSLTVRGLIKEDG-VDPESRAALLVTSEFFLDQMGLKSLDELPSL 165 >DUF387_Q740D9_34-192_PF04079.5 Length = 159 Score = 159 bits (404), Expect = 2e-38 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 1 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 61 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 121 RGLITEAGVDEDTGAT-TFATTDLFLERLGLTSLADLPDI 159 >DUF387_SCPB_15-176_PF04079.5 Length = 162 Score = 159 bits (403), Expect = 2e-38 Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG-YRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V G Y++ Sbjct: 2 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 62 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 122 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 162 >gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Mycoplasma pulmonis UAB CTIP] Length = 207 Score = 159 bits (403), Expect = 2e-38 Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG-YRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V G Y++ Sbjct: 16 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 75 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 76 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 135 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 136 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 176 >DUF387_Q8YGS3_23-178_PF04079.5 Length = 156 Score = 158 bits (402), Expect = 3e-38 Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 2 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ A + R +T + KLSRA +E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 59 APDLAFIMNR--ETVQQRKLSRATMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 117 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 156 >gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodopseudomonas palustris CGA009] Length = 432 Score = 157 bits (398), Expect = 9e-38 Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 43 FASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRTASDLAW 99 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEE 126 + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE G ++ Sbjct: 100 LMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLETGWVKP 157 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 158 RGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 191 >gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 157 bits (397), Expect = 1e-37 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 41 FASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRTAGDLAW 97 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 98 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 155 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 156 RGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 189 >gi|75675995|ref|YP_318416.1| chromosome segregation and condensation protein ScpB [Nitrobacter winogradskyi Nb-255] Length = 248 Score = 156 bits (396), Expect = 2e-37 Identities = 65/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 35 FASSEPLDQSALAKRM---PDGVDIKSALAQLQADYASRGVNLVRIANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L++L DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFSLENLGDLPGL 183 >gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 248 Score = 156 bits (395), Expect = 2e-37 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 35 FASSEPLDQAALAKRM---PDGVDIKVALAQLQADYASRGVNLVRVANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAE+EEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETKRLSRAAIEMLAIIAYHQPVTRAELEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFTLESLGDLPGL 183 >gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisseria meningitidis Z2491] Length = 200 Score = 156 bits (395), Expect = 2e-37 Identities = 68/163 (41%), Positives = 88/163 (53%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 9 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 68 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKT 117 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV I+T Sbjct: 69 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNVIQT 125 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L +RG IE +G RD G+PAL+ TT FL L L++LPPL Sbjct: 126 LQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLDGLEELPPL 168 >gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR00281 [Brucella abortus biovar 1 str. 9-941] Length = 241 Score = 155 bits (392), Expect = 4e-37 Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 35 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 91 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ A + R +T + KLSRAA+E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 92 APDLAFIMNR--ETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 150 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 189 >gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Nocardia farcinica IFM 10152] Length = 225 Score = 154 bits (391), Expect = 6e-37 Identities = 68/156 (43%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA+L V P +EQLA L+ G++L V G+R Sbjct: 27 SALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFY 86 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL Sbjct: 87 TRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLA 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGLI E G D LY TT+ FL+ GL SL D Sbjct: 147 RGLIAEAG-VDPETNGTLYRTTELFLERIGLASLSD 181 >gi|68263552|emb|CAI37040.1| segregation and condensation protein B [Corynebacterium jeikeium K411] Length = 198 Score = 153 bits (389), Expect = 9e-37 Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAG 55 + +E+LL V+ E ++ +LA +L +P G EL E G Sbjct: 19 SRVESLLLVSDEAVTPTELARVLSNEEKAVPEAEVARTLHEIAAEYEARGNGFELREHEG 78 Query: 56 GYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 +RL T+ ++ VE L +LSRAALETLA++AYRQP+TR+++ +RGVN DG + Sbjct: 79 AFRLYTRRANSDVVEAKLLDGTQQRLSRAALETLAVVAYRQPVTRSQVAAVRGVNCDGVM 138 Query: 116 KTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +TL RGLI E G G LY TT+ FL+ G++SL++LP L Sbjct: 139 RTLSLRGLIAETG---EQGGAHLYSTTELFLEQIGIESLEELPDL 180 >DUF387_SCPB_7-168_PF04079.5 Length = 162 Score = 153 bits (389), Expect = 1e-36 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 1 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 61 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 121 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 162 >gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycoplasma penetrans HF-2] Length = 197 Score = 153 bits (389), Expect = 1e-36 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 7 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 66 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 67 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 126 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 127 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 168 >DUF387_Q7UE48_165-325_PF04079.5 Length = 161 Score = 153 bits (388), Expect = 1e-36 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IEA+L +A PL+ +LA L ++ G+ + +VAGG R+ Sbjct: 1 ARIEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRM 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L+ Sbjct: 61 MTRSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 121 QLDLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 161 >gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Mycoplasma genitalium G-37] Length = 207 Score = 153 bits (388), Expect = 1e-36 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV G + ++L +L + + G+EL + + Sbjct: 23 ASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALLALERKLADDEQSGVELKKFGNSF 82 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EIRGV+S + Sbjct: 83 SLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGVDSFQIVDD 142 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 143 LIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 185 >gi|71083666|ref|YP_266386.1| segregation and condensation protein b [Candidatus Pelagibacter ubique HTCC1062] Length = 233 Score = 152 bits (386), Expect = 2e-36 Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 6/157 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EPL ++ + + G+ LV ++ + +T Sbjct: 26 VEAIIFAAAEPLDIDTIESKISKKIDVLKSLQKLQKEYSLR---GINLVCISNKWSFRTS 82 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + + KLSRAA+ETLAII Y QP+TRAEIEEIRGV ++ L+E Sbjct: 83 ENLSNLMSQ--EKTVEKKLSRAAVETLAIIVYHQPVTRAEIEEIRGVAFGTNTLEILMEL 140 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 ++ GR+DVPG+P YGTTD+FL +F L+ L DLP Sbjct: 141 NWVKPQGRKDVPGKPIQYGTTDDFLSHFSLQKLSDLP 177 >gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methanosarcina mazei Go1] Length = 371 Score = 152 bits (386), Expect = 2e-36 Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P GLE++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLMKITGKPKKNVSSAVQELMGAYSSRMSGLEILDLGDRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 66 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKKND 151 >gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrobacterium tumefaciens str. C58] Length = 250 Score = 152 bits (385), Expect = 3e-36 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 41 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + + + P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 98 AGDLSFVIRT--EEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 155 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 156 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 195 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 152 bits (384), Expect = 4e-36 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 1 AILEALLYTSGDEGLEQKQIIDILDIN------LNQLEDLVSKYHSHGLTIQRYGSTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 55 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVP-GRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E +DV R TTD FL+ FG+++LD LP Sbjct: 115 ARGLVEA---KDVDHSRSHHLITTDLFLNVFGIENLDALP 151 >gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphylococcus epidermidis ATCC 12228] Length = 180 Score = 152 bits (384), Expect = 4e-36 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 5 AILEALLYTSGDEGLEQKQIIDILDIN------LNQLEDLVSKYHSHGLTIQRYGSTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 59 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVP-GRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E +DV R TTD FL+ FG+++LD LP Sbjct: 119 ARGLVEA---KDVDHSRSHHLITTDLFLNVFGIENLDALP 155 >gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 152 bits (384), Expect = 4e-36 Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE+LL+ AG E L +QL E+LEI GL + + Y L Sbjct: 5 GIIESLLYTAGDEGLDEKQLLEILEIN------QAKLSELISSYTSSGLIIQKFGSTYIL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +K E + Y+E+L++ + KLS+AA+ETL+IIAY QP++R++IE IRG+NSDGA++TL+ Sbjct: 59 TSKKEASPYIEQLIEQKSNMKLSQAAMETLSIIAYNQPLSRSDIELIRGINSDGAVRTLI 118 Query: 120 ERGLIEEVGRRDVP-GRPALYGTTDEFLDYFGLKSLDDLP 158 RGLIE +DV R TTD FL+ FG++ ++DLP Sbjct: 119 ARGLIEA---KDVENSRSHALQTTDLFLNVFGIEKIEDLP 155 >gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 364 Score = 152 bits (384), Expect = 4e-36 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 188 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 247 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 248 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 307 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 308 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 349 >gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psychrobacter arcticum 273-4] Length = 183 Score = 152 bits (384), Expect = 4e-36 Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 4/159 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IE LL + PL+ L + L + L L A GYRLQ Sbjct: 21 IEVLLHASEVPLTANHLKKHLSLTTKTLEQALALLKQRLDLGV--LNLHHTASGYRLQIA 78 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +RGV S ++ L ++ Sbjct: 79 DSHSALIQSVF-PQRQERLSQALLETLSVIAYKQPVTRSDIEHVRGVTLSSTILRQLFDK 137 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 138 GWIEENGHKDTLGRPALLHTTPKFLDAFGLSHLDELPPM 176 >DUF387_SCPB_23-185_PF04079.5 Length = 163 Score = 151 bits (382), Expect = 7e-36 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV G + ++L +L + + G+EL + + Sbjct: 1 ASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALLALERKLADDEQSGVELKKFGNSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EIRGV+S + Sbjct: 61 SLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGVDSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 121 LIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 163 >DUF387_Q8UEP8_40-195_PF04079.5 Length = 156 Score = 150 bits (381), Expect = 9e-36 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 2 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + + + P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 59 AGDLSFVIRT--EEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 117 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 156 >DUF387_SCPB_188-349_PF04079.5 Length = 162 Score = 150 bits (380), Expect = 1e-35 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 1 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 61 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 121 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 162 >gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 204 Score = 150 bits (380), Expect = 1e-35 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLE---------IPPXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + + G EL EV Sbjct: 24 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 83 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 84 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 143 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 144 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 189 >gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methanosarcina acetivorans C2A] Length = 374 Score = 150 bits (380), Expect = 1e-35 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 9 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 69 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 125 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 154 >gi|19552641|ref|NP_600643.1| predicted transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 192 Score = 150 bits (380), Expect = 1e-35 Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +E++L V P+S LA +L I G++L E A G+R Sbjct: 20 SRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYY 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 80 TRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQL 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 140 RGLVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 178 >DUF387_Q6AGG0_22-189_PF04079.5 Length = 168 Score = 150 bits (379), Expect = 1e-35 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLE---------IPPXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + + G EL EV Sbjct: 3 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 62 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 63 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 122 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 123 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 168 >gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Treponema pallidum subsp. pallidum str. Nichols] Length = 192 Score = 150 bits (379), Expect = 2e-35 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG---LELVEVAGGY 57 A++EA+LFV G LS LA L + G LEL G Sbjct: 18 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 77 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 78 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 137 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 138 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 180 >gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 281 [Methanosarcina barkeri str. fusaro] Length = 371 Score = 149 bits (378), Expect = 2e-35 Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLTKITGKPKKTVLSAIQKLTEIYSSRGSGIEILDLEERYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY++ + P +LS L TL++IAY QP+ ++++ ++RG + IK L+ER Sbjct: 66 KPEYSDLMR----EVAPKELSTPKLRTLSMIAYHQPLLQSDLIDMRGSGAYDHIKDLVER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKRND 151 >gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] Length = 200 Score = 149 bits (378), Expect = 2e-35 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L + P+ E LA ++ E+ +VAGG+ +T+ Sbjct: 32 IEAVLSASASPVPREDLARVVGQGASVDLLVEDLAADLEGR---AFEINQVAGGWIFRTR 88 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 89 ATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLHA 148 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 149 RDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLPD 187 >DUF387_Q92Q27_30-185_PF04079.5 Length = 156 Score = 149 bits (378), Expect = 2e-35 Identities = 68/160 (42%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 2 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + R KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 59 AADLSFVVNTDEQEVR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP +GTT +FLD+FGL+ + DLP + Sbjct: 117 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGI 156 >gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 195 Score = 149 bits (377), Expect = 2e-35 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 IIEA+L++ GE +S QL L++ G+ +VE ++ Sbjct: 5 IIEAILYLQGEKGVSSLQLQNCLKLAKISQARKLLKDFAIEFNRQKRGILVVEFDDIFKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR-GVNSDGAIKTL 118 T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IR G+NSD + +L Sbjct: 65 VTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVGSL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 125 LAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLPK 165 >DUF387_Q8NQK9_9-167_PF04079.5 Length = 159 Score = 149 bits (377), Expect = 2e-35 Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +E++L V P+S LA +L I G++L E A G+R Sbjct: 1 SRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 61 TRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQL 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 121 RGLVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 159 >gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [Arthrobacter sp. FB24] Length = 229 Score = 149 bits (377), Expect = 2e-35 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 24/183 (13%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-----------------------PPXXXXXXXXXX 37 A IEA+L V +P + +LA L + P Sbjct: 29 AAIEAVLMVIDQPATAVELAAGLNLTVDTVEQLLAELQREYNGYTVNAPDSDVANTAHMN 88 Query: 38 XXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP 97 G EL +AGG+R+ ++ ++A+ V + + +L++AALETLA+IAYRQP Sbjct: 89 TAGTTSRPRGFELRNIAGGWRIYSRTDFADVVGGFVLEGQTARLTQAALETLAVIAYRQP 148 Query: 98 ITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 ++RA + IRGVN D ++TL++RGLIE+ G G LY TT FL+ G+ S+ +L Sbjct: 149 VSRARVSAIRGVNVDSVVRTLMQRGLIEDSGTDPESG-AILYRTTSYFLERMGIGSVAEL 207 Query: 158 PPL 160 P L Sbjct: 208 PQL 210 >DUF387_Q8KVW0_30-188_PF04079.5 Length = 159 Score = 149 bits (377), Expect = 3e-35 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L + P+ E LA ++ E+ +VAGG+ +T+ Sbjct: 3 IEAVLSASASPVPREDLARVVGQGASVDLLVEDLAADLEGR---AFEINQVAGGWIFRTR 59 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 60 ATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLHA 119 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 120 RDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLPD 158 >DUF387_O83471_18-180_PF04079.5 Length = 163 Score = 148 bits (375), Expect = 4e-35 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG---LELVEVAGGY 57 A++EA+LFV G LS LA L + G LEL G Sbjct: 1 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 61 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 121 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 163 >DUF387_Q8TI25_8-157_PF04079.5 Length = 150 Score = 148 bits (375), Expect = 4e-35 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 2 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 62 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 118 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 147 >DUF387_Q5ZZQ3_4-166_PF04079.5 Length = 163 Score = 148 bits (375), Expect = 4e-35 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 IIEA+L++ GE +S QL L++ G+ +VE ++ Sbjct: 2 IIEAILYLQGEKGVSSLQLQNCLKLAKISQARKLLKDFAIEFNRQKRGILVVEFDDIFKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR-GVNSDGAIKTL 118 T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IR G+NSD + +L Sbjct: 62 VTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVGSL 121 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 122 LAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLPK 162 >gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 239 Score = 148 bits (374), Expect = 5e-35 Identities = 68/160 (42%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 31 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + R KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 88 AADLSFVVNTDEQEVR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 145 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP +GTT +FLD+FGL+ + DLP + Sbjct: 146 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGI 185 >gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 281 [Psychrobacter cryohalolentis K5] Length = 186 Score = 148 bits (374), Expect = 5e-35 Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 4/159 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IE LL + PL+ L + L + L L A GYRLQ Sbjct: 21 IEVLLHASEAPLTTNHLKKHLFLTTNKLEQALELLKQRLNLGV--LSLHHTASGYRLQIA 78 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +RGV S ++ L ++ Sbjct: 79 DSHSALIQNVF-PQRQERLSQALLETLSVIAYKQPVTRSDIEHVRGVTLSSNILRQLFDK 137 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 138 GWIEENGYKDTLGRPALLHTTSQFLDAFGLSHLDELPPM 176 >gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 196 Score = 147 bits (373), Expect = 6e-35 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 5/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + P+S E LA ++ ++ V G+ L+T+ Sbjct: 29 IEAVLFASATPVSREALARVVGQGVSVELLIDDLSAELESR---SFQVAHVKDGWFLRTR 85 Query: 63 PEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 YA + + L+ + LA IAY QPITR +++I G + S I L + Sbjct: 86 SAYASAIRDAQSAGHQVMDLNAFDVAVLAAIAYHQPITREGLKDIFGKDISRDLIGRLHD 145 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 RGLI R G P + TTD+FL F L++L DLP Sbjct: 146 RGLIGNGPRAPRRGAPYTFVTTDQFLLAFDLETLQDLPD 184 >DUF387_Q6NHE4_7-170_PF04079.5 Length = 164 Score = 146 bits (370), Expect = 1e-34 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V +P S+ LA E P G+E+ E G+RL Sbjct: 1 SQIESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL Sbjct: 61 TVKRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQL 120 Query: 121 RGLIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 121 RGLIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 164 >gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Corynebacterium diphtheriae NCTC 13129] Length = 184 Score = 146 bits (370), Expect = 2e-34 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V +P S+ LA E P G+E+ E G+RL Sbjct: 7 SQIESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLY 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL Sbjct: 67 TVKRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQL 126 Query: 121 RGLIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 127 RGLIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 170 >gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulobacter crescentus CB15] Length = 221 Score = 146 bits (370), Expect = 2e-34 Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 13 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 69 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 70 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI GRR PGRP +GTTD F++++GL +L DLP + Sbjct: 128 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGI 166 >gi|57284636|gb|AAW36730.1| segregation and condensation protein B [Staphylococcus aureus subsp. aureus COL] Length = 180 Score = 146 bits (369), Expect = 2e-34 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L++ GL + Y L Sbjct: 5 GILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSH------GLMIQRFGMTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E A Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 59 TTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 119 AKGLVEA--KVVNEQRSQQLITTDLFLNVFGISNIEDLP 155 >gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 281 [Methanococcoides burtonii DSM 6242] Length = 367 Score = 145 bits (368), Expect = 3e-34 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA+LF AGE + + LA+L+ G+E++++ G Y +Q Sbjct: 6 IIEAVLFAAGEAVDTQTLAKLINKSAKNVTPVIRSLMEEYSTRESGMEIIDLGGRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+Y + + P +L L TL+++AY QP+ ++E+ ++RG + I+ L +R Sbjct: 66 KPKYTDVIS----PIAPKELKAPILRTLSMVAYHQPVVQSELVDMRGNSVYDHIRELKDR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G IE V GR L TT F DYFGL + Sbjct: 122 GFIEAVPH----GRTKLLQTTPLFADYFGLDRNE 151 >DUF387_Q9A6S9_11-166_PF04079.5 Length = 156 Score = 145 bits (366), Expect = 5e-34 Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 3 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 60 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI GRR PGRP +GTTD F++++GL +L DLP + Sbjct: 118 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGI 156 >gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 281 [Rubrobacter xylanophilus DSM 9941] Length = 185 Score = 144 bits (365), Expect = 7e-34 Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + P+S LA + G+ L EVAGG++L T Sbjct: 6 LVEAVLFSSARPVSRGALASCTGLSAGEVERALAELAGRYSPERSGVVLREVAGGFQLAT 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P + VER RP LS AA E LA + Y P+TR I +RGVNSD ++TL+ER Sbjct: 66 NPACSAAVERFRGEARPAPLSAAAHEVLACVLYLGPLTRGAISRVRGVNSDAVVRTLIER 125 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GL+ E G + G+ AL T++FL G S +D PPL Sbjct: 126 GLLAEKGSSE-EGQAALLDVTEDFLVAAGASSREDFPPL 163 >DUF387_Q7P2S1_5-163_PF04079.5 Length = 159 Score = 143 bits (362), Expect = 1e-33 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA++F+ G+ ++ LA+ +I +E+ L Sbjct: 1 SQVEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDTGINIEIDS--EIVYLS 58 Query: 61 TKPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L Sbjct: 59 TNPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLE 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 ER + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 119 ERKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELPD 158 >gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 181 Score = 143 bits (362), Expect = 1e-33 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA++F+ G+ ++ LA+ +I +E+ L Sbjct: 5 SQVEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDTGINIEIDS--EIVYLS 62 Query: 61 TKPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L Sbjct: 63 TNPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLE 122 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 ER + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 123 ERKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELPD 162 >gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 236 Score = 143 bits (361), Expect = 2e-33 Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA +F + P+ E LA L+ ELV VAGG++ + Sbjct: 28 GRVEAAIFASPTPVPRETLARLIG---RACVLDELIADIRDELKPRPYELVFVAGGFQHR 84 Query: 61 TKPEYAEYVERLLK--TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 +K + E + +L PP LS+ ++ IAY QP+TR+ I + G S I Sbjct: 85 SKARFTEAIRAVLGGRETGPPDLSKTESLVISAIAYLQPVTRSSISRLLGKAISRDIIAK 144 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L LI R PG P Y TT FL FGL SL DLP + Sbjct: 145 LKRLDLIGAGPRMAEPGAPFSYVTTPTFLSVFGLASLRDLPEI 187 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 142 bits (358), Expect = 4e-33 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L+I GL + Y L Sbjct: 1 GILESLLFTAGDEGLDEKQLLEILDISKDQLVELIENYSSH------GLIIQRFGTTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 55 TTKKEASMYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 115 AKGLVEA--KVVNEQRSQQLITTDLFLNVFGISNIEDLP 151 >gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 244 Score = 142 bits (358), Expect = 4e-33 Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EAL+F + P+S + L++ L P G+ LV V + +T Sbjct: 38 EALVFASAAPVSFKSLSDRL---PDGVDIRAIMEELKGDYERRGVNLVRVEDSWAFRTAG 94 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R + KLSRAALE L++IAY QP+TRAEIEEIRGV S G + LLE G Sbjct: 95 DLAFLMSR--DAVQQKKLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETG 152 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT EFLD+FGL+ L DLP + Sbjct: 153 WVRMRGRRRAPGRPVTYGTTLEFLDHFGLEELRDLPGI 190 >gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Mycoplasma synoviae 53] Length = 185 Score = 141 bits (357), Expect = 5e-33 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEALL++ G E L+LEQ+ E+ + GL++V ++L Sbjct: 1 MIEALLYIQGDEGLNLEQVKEVFNLNNTHEAKKIMQDFQKDFNNLDRGLKVVVFDEIFKL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ YV +L+ T +L+ AA+E IIAY+ PITR +I +IRG SD + LL Sbjct: 61 ATRESVRAYVSKLVTTTGKQRLTSAAIEVAGIIAYKGPITRGQISKIRGAVSDHIVNNLL 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++G+I EVG G P LY + +F D+F + S DLP + Sbjct: 121 KKGIIHEVGVSHTQGNPVLYEVSSQFYDHFKISSKQDLPKM 161 >DUF387_O28692_5-154_PF04079.5 Length = 150 Score = 140 bits (355), Expect = 9e-33 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 2 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER + R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 62 KPQYAEYVERFTV----REFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL++ + GR + TT+EF YFGL S + Sbjct: 118 GLVK----AEKKGRSTILTTTEEFATYFGLDSAE 147 >gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archaeoglobus fulgidus DSM 4304] Length = 166 Score = 139 bits (352), Expect = 2e-32 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 6 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER + R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 66 KPQYAEYVERFTV----REFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL++ + GR + TT+EF YFGL S + Sbjct: 122 GLVK----AEKKGRSTILTTTEEFATYFGLDSAE 151 >gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 182 Score = 138 bits (349), Expect = 4e-32 Identities = 72/149 (48%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P+ L +LA +L + G+ L VAGGYRL P A ++ Sbjct: 24 RPVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAP 83 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 84 LLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRG-ASAGTVLTLQERELVKVVGRSD 142 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 143 AVGQPLLYGTTEKFLLEFGLGSLQDLPPL 171 >gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 181 Score = 138 bits (349), Expect = 4e-32 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +E+++F+ G+ ++ LA+ +I G+ L + L T Sbjct: 7 VESIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINLEVDSEIVYLSTN 64 Query: 63 PEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P Y E + + E +P KLS A++ETL+IIAY+QPIT++EIE IRGV+ D + L ER Sbjct: 65 PLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPITKSEIESIRGVSVDRIVSNLEER 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 + G+++ + LY TD+FL Y G+KS+ +LP Sbjct: 125 KFVRNCGKQESGRKANLYEVTDKFLSYLGIKSITELPD 162 >DUF387_Q6MTL7_7-171_PF04079.5 Length = 165 Score = 138 bits (348), Expect = 5e-32 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AIIE LLF+ G+ +SL + +L+ P + Sbjct: 1 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 61 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 121 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 165 >gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 209 Score = 138 bits (348), Expect = 5e-32 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AIIE LLF+ G+ +SL + +L+ P + Sbjct: 7 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 67 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 127 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 171 >DUF387_Q9RTA4_13-171_PF04079.5 Length = 159 Score = 136 bits (343), Expect = 2e-31 Identities = 72/149 (48%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P+ L +LA +L + G+ L VAGGYRL P A ++ Sbjct: 12 RPVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAP 71 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 72 LLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRG-ASAGTVLTLQERELVKVVGRSD 130 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 131 AVGQPLLYGTTEKFLLEFGLGSLQDLPPL 159 >gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 281 [Trichodesmium erythraeum IMS101] Length = 173 Score = 135 bits (341), Expect = 4e-31 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IEA+L++ G+ LS+ ++AE+ + LE+VE GY LQ Sbjct: 6 SKIEAILYLKGKALSISEIAEIAKCERGQIKDALIELMSEYAHRHTALEVVETEKGYSLQ 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 KP + E +E L++ E L AL TLA IA + IT++E+ +IRG + L+ Sbjct: 66 LKPTFTELIESLIEPE----LGVGALRTLAAIALKGGITQSELVDIRGSGVYQHVPELVS 121 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 G I + RR R TD+F YF LD LP Sbjct: 122 LGFIRK--RRQKESRSYWLQVTDKFHQYF---QLDQLP 154 >gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] Length = 198 Score = 135 bits (340), Expect = 5e-31 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 9 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + RRD R T +F YF ++ L Sbjct: 125 FVRK--RRDNESRSYSLQVTPKFHQYFQIEQL 154 >gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Nostoc punctiforme PCC 73102] Length = 180 Score = 134 bits (338), Expect = 9e-31 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 9/158 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL ++AE LE++E GY LQ + Sbjct: 9 IEAILYLKGKPLSLGEIAEYAACDRAAVKEGIIELMDNYAHRDSALEVIETPDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ +RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGVGALRTLAAIALNSPILQSDLINLRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I + RRD R T +F YF ++ LP + Sbjct: 125 FIRK--RRDSDSRSYSLQVTPKFHQYFQIE---QLPQI 157 >DUF387_P74610_5-159_PF04079.5 Length = 155 Score = 133 bits (337), Expect = 1e-30 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 3 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 63 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + R+ GR TD+F YF + SL Sbjct: 119 FVRK--RKQTEGRSYWLEITDKFHQYFEIDSL 148 >gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synechocystis sp. PCC 6803] Length = 162 Score = 133 bits (337), Expect = 1e-30 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 7 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 67 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + R+ GR TD+F YF + SL Sbjct: 123 FVRK--RKQTEGRSYWLEITDKFHQYFEIDSL 152 >gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 281 [Crocosphaera watsonii WH 8501] Length = 155 Score = 133 bits (336), Expect = 1e-30 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 9/156 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL +A+ E LE+VE GY LQ + Sbjct: 8 IEAILYLKGQPLSLMDIAQCAECEVDTAQEAMMELISDYAYRDSALEVVETETGYSLQLR 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + + L P +L + AL TLA IA + PI + E+ E+RG + ++ L+E G Sbjct: 68 SVFDD----LTDDIIPAELGKGALRTLAAIALKNPIVQTELIELRGSTAYQHVQELVEMG 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + + RR GR L T++F YF +D P Sbjct: 124 FVRK--RRQESGRSYLLEVTNKFHQYF---EIDQFP 154 >gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 281 [Deinococcus geothermalis DSM 11300] Length = 176 Score = 132 bits (334), Expect = 2e-30 Identities = 72/149 (48%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P++ ++A LL +P G E+ VAGGYRL P A ++ Sbjct: 18 RPVTRREVAALLGLPEEAAARALDAFAGVLRDAGLGFEVEAVAGGYRLVVPPALAAHLAP 77 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LA+IAYRQPITRAEIE +RG S G + TL ER L++ VGR D Sbjct: 78 LLAPPPLPPLSAAALEVLAVIAYRQPITRAEIEAMRG-GSAGTVVTLQERELVKVVGRSD 136 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT+ FL FGL SL+DLPPL Sbjct: 137 AVGQPLLYGTTERFLLEFGLTSLEDLPPL 165 >gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (ypuH-like) [Pyrococcus abyssi GE5] Length = 192 Score = 132 bits (333), Expect = 3e-30 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQKVIHLMPK---PELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 125 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 160 >gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyrococcus furiosus DSM 3638] Length = 188 Score = 132 bits (333), Expect = 3e-30 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLSL++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+LS L+TLA+IAY QP+ +++I ++RG + I+ L Sbjct: 68 MQVKQEYSQRVIPLMPK---PELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 LE GLI + R L GTT++F + +G D + Sbjct: 125 LEMGLI----YAEPYERTRLLGTTEKFAELYGFPENDPM 159 >DUF387_Q8YLY0_7-157_PF04079.5 Length = 151 Score = 131 bits (332), Expect = 4e-30 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 3 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 63 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + + RRD R T +F YF ++ L Sbjct: 119 FVRK--RRDNESRSYSLQVTPKFHQYFQIEQL 148 >DUF387_Q9V1Y8_8-160_PF04079.5 Length = 153 Score = 130 bits (329), Expect = 8e-30 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 1 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQKVIHLMPK---PELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 LE GLI + R L GTT++F + +G D Sbjct: 118 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND 150 >gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 177 Score = 130 bits (327), Expect = 2e-29 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 20 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 80 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + IE +R GR +++F F + LP L Sbjct: 136 QNFIER--KRQSEGRSYWLTLSEKFHRTFSV-----LPDL 168 >gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeobacter violaceus PCC 7421] Length = 158 Score = 128 bits (323), Expect = 4e-29 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 8/155 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ PL+LEQL+ E LE+ + A GY LQ + Sbjct: 10 LEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQLR 69 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ +G Sbjct: 70 PPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGKG 125 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 + R GR T++F YF ++ + DL Sbjct: 126 FVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 156 >DUF387_Q7V7Q5_20-168_PF04079.5 Length = 149 Score = 128 bits (322), Expect = 5e-29 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 1 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 61 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + IE +R GR +++F F + LP L Sbjct: 117 QNFIER--KRQSEGRSYWLTLSEKFHRTFSV-----LPDL 149 >gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Synechococcus elongatus PCC 6301] Length = 183 Score = 127 bits (321), Expect = 7e-29 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 7 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 67 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +G I++ RR GR TD+F YF Sbjct: 123 QGFIQK--RRQSNGRSYWLEVTDKFHQYF 149 >gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptional regulator containing the HTH domain [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 127 bits (321), Expect = 8e-29 Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 1/87 (1%) Query: 73 LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRD 131 ++ + KLSRAA+ETLAIIAY QP+TRAEIEE+RGV S G + L G I GRR Sbjct: 1 MERSQERKLSRAAVETLAIIAYHQPVTRAEIEEVRGVALSKGTMDILFSAGWIRPKGRRR 60 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLP 158 PGRP + TTD FLD+FGL+SL DLP Sbjct: 61 TPGRPLTWATTDGFLDHFGLESLSDLP 87 >DUF387_Q7NJH4_8-156_PF04079.5 Length = 149 Score = 127 bits (321), Expect = 8e-29 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 8/155 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ PL+LEQL+ E LE+ + A GY LQ + Sbjct: 3 LEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ +G Sbjct: 63 PPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGKG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 + R GR T++F YF ++ + DL Sbjct: 119 FVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 149 >gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 165 Score = 126 bits (319), Expect = 1e-28 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 8 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 67 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 68 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 124 QDFIER--RRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 161 >DUF387_Q7U6P4_8-162_PF04079.5 Length = 155 Score = 126 bits (319), Expect = 1e-28 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 1 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 61 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 117 QDFIER--RRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 154 >DUF387_Q5N339_7-162_PF04079.5 Length = 156 Score = 126 bits (318), Expect = 2e-28 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 1 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 61 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +G I++ RR GR TD+F YF Sbjct: 117 QGFIQK--RRQSNGRSYWLEVTDKFHQYF 143 >gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyrococcus horikoshii OT3] Length = 195 Score = 126 bits (317), Expect = 2e-28 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+ +VAG + Sbjct: 11 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYAERKSAIEVTKVAGDKWV 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IA+ QP+ +++I ++RG + IK L Sbjct: 71 MQVKQEYSQRVIHLMPK---PELTAGELKTLALIAFLQPVEQSKIVKLRGSQAYEHIKRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 128 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 163 >gi|57160221|dbj|BAD86151.1| predicted transcription regulator, YpuH-like family [Thermococcus kodakarensis KOD1] Length = 194 Score = 125 bits (314), Expect = 4e-28 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQRVIHLMPK---PDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 125 VEMGLV----YAEPYERTKLLGTTKKFAELYGFPEND 157 >gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator containing the HTH domain [uncultured euryarchaeote Alv-FOS4] Length = 169 Score = 123 bits (311), Expect = 1e-27 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF P+ + ++A++ + +E+V + Y +Q Sbjct: 7 IVEAVLFSTDRPMRVGEIAKIGGLRSEEVSKAMRKLREEYEQRDGAIEIVRIGNKYVMQL 66 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + EY Y + K E ++ L+TLAIIAY QPIT+ ++ E+ G + L +R Sbjct: 67 RDEYVNYGYSVGKKE----MNDDVLKTLAIIAYYQPITQRKLREMLGTKVYQHVDELKKR 122 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GLI G++ GR + TT F +YFG+ Sbjct: 123 GLI--YGKKS--GRTEILRTTKRFNEYFGID 149 >DUF387_Q5JDN0_8-160_PF04079.5 Length = 153 Score = 123 bits (310), Expect = 2e-27 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 1 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQRVIHLMPK---PDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 118 VEMGLV----YAEPYERTKLLGTTKKFAELYGFPEND 150 >gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 160 Score = 121 bits (304), Expect = 7e-27 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 3 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 63 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +E +R GR +++F F Sbjct: 119 MNFVER--KRQREGRSFWLTLSEKFHRTF 145 >gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation and condensation protein ScpB [Prochlorococcus marinus str. NATL2A] Length = 168 Score = 120 bits (303), Expect = 8e-27 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G P S +++AELL+ LE+ E Y L+ Sbjct: 11 AKIEAILYLKGRPTSSKEMAELLDKDIAEIEKALWELKAGYAQRDTSLEINENKSHYSLE 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P LS A L TLA +A ++ I ++E+ ++RG + IK L+E Sbjct: 71 LRQGLGELVQDLL----PADLSIATLRTLATVALKKKILQSELVDLRGSGAYDHIKELVE 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 + +E RR GR +++F F + Sbjct: 127 KNFVER--RRQKDGRSFWLTLSEKFHQTFSV 155 >gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluconobacter oxydans 621H] Length = 129 Score = 120 bits (302), Expect = 1e-26 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ + LLE LI GR++VPG Sbjct: 18 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 77 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 78 RPVLWGTTASFLESFGLPDLRGLP 101 >gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermotoga maritima MSB8] Length = 167 Score = 120 bits (302), Expect = 1e-26 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F + ++LE+L ++LE P G+ L EV G YR Sbjct: 5 AAIEALIFASN-GITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 63 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V +L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 64 TKPEYAGFVSKL-SGRKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 123 MGIV----RKKRKGKSYLYQLSPSFVE 145 >DUF387_Q6F0R6_7-169_PF04079.5 Length = 163 Score = 119 bits (300), Expect = 2e-26 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AI+E LLFV G+ +SL L +LE P + + Sbjct: 1 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 61 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L ++ LI+ VG+ LY TD F F + + LP + Sbjct: 121 RLRQKKLIKAVGKTSTG--ANLYTITDNFFKLFNITGGFEALPQI 163 >gi|50365366|ref|YP_053791.1| chromosomal segregation/condensation protein [Mesoplasma florum L1] Length = 209 Score = 119 bits (300), Expect = 2e-26 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AI+E LLFV G+ +SL L +LE P + + Sbjct: 7 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 67 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L ++ LI+ VG+ LY TD F F + + LP + Sbjct: 127 RLRQKKLIKAVGKTSTG--ANLYTITDNFFKLFNITGGFEALPQI 169 >DUF387_Q9WYW4_5-159_PF04079.5 Length = 155 Score = 119 bits (300), Expect = 2e-26 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F + ++LE+L ++LE P G+ L EV G YR Sbjct: 1 AAIEALIFASN-GITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 59 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V +L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 60 TKPEYAGFVSKL-SGRKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 119 MGIV----RKKRKGKSYLYQLSPSFVE 141 >DUF387_Q5FQ51_2-103_PF04079.5 Length = 102 Score = 119 bits (299), Expect = 3e-26 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ + LLE LI GR++VPG Sbjct: 17 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 76 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 77 RPVLWGTTASFLESFGLPDLRGLP 100 >DUF387_Q7VC16_3-151_PF04079.5 Length = 149 Score = 118 bits (298), Expect = 3e-26 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 1 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 61 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +E +R GR +++F F Sbjct: 117 MNFVER--KRQREGRSFWLTLSEKFHRTF 143 >DUF387_Q7V1G4_3-155_PF04079.5 Length = 153 Score = 117 bits (294), Expect = 9e-26 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 6/151 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ G P+S + L+E+ +EL E+ Y L+ K Sbjct: 3 VEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLELK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 63 SILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNKK 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 119 FI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 147 >gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 117 bits (294), Expect = 9e-26 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 6/151 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ G P+S + L+E+ +EL E+ Y L+ K Sbjct: 5 VEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLELK 64 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 65 SILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNKK 120 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 121 FI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 149 >gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 297 Score = 116 bits (293), Expect = 1e-25 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 127 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 186 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 187 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 246 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 247 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 290 >gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongatus BP-1] Length = 173 Score = 116 bits (291), Expect = 2e-25 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ +PL+L +LA L LE+V++ Y LQ K Sbjct: 14 VEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQLK 73 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL G Sbjct: 74 SAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTLG 129 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 I RRD R + T+ F YF + L Sbjct: 130 FI--RRRRDSQSRSYILQVTERFHQYFQVDHL 159 >DUF387_Q8DKL3_12-162_PF04079.5 Length = 151 Score = 113 bits (285), Expect = 1e-24 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L++ +PL+L +LA L LE+V++ Y LQ K Sbjct: 3 VEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL G Sbjct: 63 SAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTLG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 I RRD R + T+ F YF + L Sbjct: 119 FI--RRRRDSQSRSYILQVTERFHQYFQVDHL 148 >DUF387_Q7UPG2_127-292_PF04079.5 Length = 166 Score = 113 bits (283), Expect = 2e-24 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 1 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 61 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 120 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 121 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 164 >gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 136 Score = 111 bits (279), Expect = 6e-24 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 1/82 (1%) Query: 80 KLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRDVPGRPAL 138 KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E G + GRR PGRP Sbjct: 1 KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSRGTLHVLMEAGWVRFRGRRRTPGRPVT 60 Query: 139 YGTTDEFLDYFGLKSLDDLPPL 160 GTT +FLD+FGL+ L DLP L Sbjct: 61 LGTTRDFLDHFGLEELRDLPGL 82 >gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 505 Score = 100 bits (250), Expect = 1e-20 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 356 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 415 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV + Sbjct: 416 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 469 >DUF387_Q9K079_356-484_PF04079.5 Length = 129 Score = 98.5 bits (245), Expect = 4e-20 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 1 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 60 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV + Sbjct: 61 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 114 >DUF387_Q9HKK2_10-161_PF04079.5 Length = 152 Score = 95.8 bits (238), Expect = 3e-19 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 3 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y + PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 63 SQYFSEAYAV----SPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 118 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GL++ + + G +Y +F YFG+ Sbjct: 119 GLVKLINK----GNSKIYTLGRKFESYFGIS 145 >gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 179 Score = 95.8 bits (238), Expect = 3e-19 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 12 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 71 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y + PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 72 SQYFSEAYAV----SPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GL++ + + G +Y +F YFG+ Sbjct: 128 GLVKLINK----GNSKIYTLGRKFESYFGIS 154 >gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 171 Score = 72.7 bits (178), Expect = 3e-12 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 15 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 74 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ E LS+ LA +A + + + + G +D I L Sbjct: 75 KEYYDFAYRVMEPE----LSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 130 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 LI + G G + F FG+ Sbjct: 131 LIRTS--KKGNGTAIYLG--ENFEKVFGI 155 >DUF387_Q97B36_13-163_PF04079.5 Length = 151 Score = 71.1 bits (174), Expect = 8e-12 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 3 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ E LS+ LA +A + + + + G +D I L Sbjct: 63 KEYYDFAYRVMEPE----LSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 LI + G G + F FG+ Sbjct: 119 LIRTS--KKGNGTAIYLG--ENFEKVFGI 143 >gi|13475236|ref|NP_106800.1| hypothetical protein msr6263 [Mesorhizobium loti MAFF303099] Length = 78 Score = 68.4 bits (167), Expect = 6e-11 Identities = 19/42 (45%), Positives = 22/42 (52%) Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 + GLI R PG P Y TT FL FGL++L DLP Sbjct: 1 MRSFGLIASGPRSPTPGAPYTYVTTKHFLLEFGLETLRDLPD 42 >DUF387_Q6L0G6_6-153_PF04079.5 Length = 148 Score = 62.7 bits (152), Expect = 3e-09 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ EPL + +A+ L++ LE+ ++ Y++Q Sbjct: 3 VEAILYSCEEPLKVSDIADYLKVSNDDVIRAMKLIARSYNEINSTLEIKKIGNKYKIQLS 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V +K L + + L+ I + + E+ E G N ++K L Sbjct: 63 NDFNDVVYPFVK----KDLDKRDIAMLSYIYGKPGVIAGELRENFGYNFMESVKKLKAEK 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 LI R+ Y T F F +K Sbjct: 119 LITSHKYRNT----FKYHVTKNFYVRFNVKD 145 >gi|48430671|gb|AAT43536.1| thiosulfate sulfurtransferase [Picrophilus torridus DSM 9790] Length = 153 Score = 62.7 bits (152), Expect = 3e-09 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ EPL + +A+ L++ LE+ ++ Y++Q Sbjct: 8 VEAILYSCEEPLKVSDIADYLKVSNDDVIRAMKLIARSYNEINSTLEIKKIGNKYKIQLS 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V +K L + + L+ I + + E+ E G N ++K L Sbjct: 68 NDFNDVVYPFVK----KDLDKRDIAMLSYIYGKPGVIAGELRENFGYNFMESVKKLKAEK 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 LI R+ Y T F F +K Sbjct: 124 LITSHKYRNT----FKYHVTKNFYVRFNVKD 150 >gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia mallei FMH] Length = 85 Score = 51.5 bits (123), Expect = 7e-06 Identities = 22/77 (28%), Positives = 32/77 (41%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERP 78 KP Y++R + R Sbjct: 69 KPAMRTYLDRCIPRSRR 85 >gi|68141196|gb|EAM94485.1| hypothetical protein FaciDRAFT_1595 [Ferroplasma acidarmanus Fer1] Length = 162 Score = 48.4 bits (115), Expect = 6e-05 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 13/153 (8%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + EP+ ++AE L I L + + Y+++ Sbjct: 11 IEAILFSSKEPVKASEIAEYLNITNAEFIKAIKEISRNYENIESSLIVGQFGNSYKIKLS 70 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYR---QPITRAEIEEIRGVNSDGAIKTLL 119 E+ V+ ++ E K L L+ I Y+ + I+ + + G ++ L Sbjct: 71 EEFVPVVDPFIEKEFTEK----QLAMLSYI-YKMNGEAIS-GNLRDNFGYAYKEDLEKLK 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 + G++ R+ Y T EF F + Sbjct: 125 KGGMVSSRKYRNT----HKYKVTTEFHRKFNIN 153 >gi|68183625|ref|ZP_00556599.1| hypothetical protein JannDRAFT_0530 [Jannaschia sp. CCS1] Length = 99 Score = 45.7 bits (108), Expect = 4e-04 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + + E LA ++ EL VAGG+ T+ Sbjct: 4 IEAVLFASASSVGREDLACVVGQEASVEALIYDIWAEFVGRR---YELARVAGGWMFYTR 60 Query: 63 PEYA 66 ++A Sbjct: 61 TQFA 64 >gi|24379105|ref|NP_721060.1| putative transcriptional regulator [Streptococcus mutans UA159] Length = 154 Score = 42.6 bits (100), Expect = 0.003 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 10/75 (13%) Query: 64 EYAEYVERLLKTERPP-------KLSRAALETLAIIAYRQPITRAEIEEIRG---VNSDG 113 ++ +++ + E+ L+ A + TL IA QPI + ++RG Sbjct: 12 KFQDFLATYAQLEKNQHVIKGAIPLNTAEVHTLVSIAQNQPINLVGLSKVRGISRSAVTQ 71 Query: 114 AIKTLLERGLIEEVG 128 + L +GL+ +V Sbjct: 72 MVSRLESKGLLIKVP 86 >gi|38234449|ref|NP_940216.1| Putative DNA-biding protein [Corynebacterium diphtheriae NCTC 13129] Length = 221 Score = 41.8 bits (98), Expect = 0.005 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 10/87 (11%) Query: 74 KTERPPKLSRAALETLAIIAYRQP-ITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGR 129 + RP L+ A IA P I+ +I + G S IKTL G I + Sbjct: 9 RQSRPGILTPAQERVAQAIARLGPEISLTDISRMVGGHPNASRQHIKTLENSGYISATQK 68 Query: 130 RDVPGRPA-LYGTTDEFLDYFGLKSLD 155 R GRPA LY T E GL++L Sbjct: 69 RGAAGRPAQLYSITPE-----GLRALA 90 >gi|55232751|gb|AAV48170.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 255 Score = 41.5 bits (97), Expect = 0.008 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 11/63 (17%) Query: 86 LETLAIIAYRQP-ITRAEIEEIRGVNSDGA---IKTLLERGLIEEVGRRDVPGRPALYGT 141 L IA RQP +++ EI + GV S I+ L++ GL+E+ GR Y Sbjct: 14 FRVLVEIAERQPAVSQGEIADAVGVTSQAVSEYIRELVDDGLVEKEGRSR-------YRV 66 Query: 142 TDE 144 T E Sbjct: 67 TKE 69 >gi|56461561|ref|YP_156842.1| Primosomal protein A (replication factor Y), superfamily II helicase [Idiomarina loihiensis L2TR] Length = 736 Score = 41.1 bits (96), Expect = 0.008 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 68 YVERLLKTERPPKLSRAA--LETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIE 125 + L + + L AA + LA + Y QP+ R+++ +I GV S ++TL ++G IE Sbjct: 125 ALTDLGRAQSINDLKGAARQQQVLAALKY-QPLRRSDLTDI-GVTS-AVLRTLQDKGWIE 181 Query: 126 EVGRRDV 132 + Sbjct: 182 VREQAPT 188 >gi|48429918|gb|AAT42783.1| hypothetical protein PTO0198 [Picrophilus torridus DSM 9790] Length = 118 Score = 39.5 bits (92), Expect = 0.029 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVNSDGAIKTLLE 120 +E + +L K + R+ TL I R +T EIE +R A++ L Sbjct: 2 ALSEEINKLAKYLIVSDIPRSVAYTLVYIKDRGEVTSVEIERETGLRQPEVSIAMQWLRR 61 Query: 121 RGLIEEVG-RRDVPGRPAL-YGTTDEFLDYF 149 +G I + +++ GRP Y + +F + Sbjct: 62 KGWITKRNMKKEGKGRPIHGYKLSKDFNEIL 92 >gi|18976604|ref|NP_577961.1| transcription regulatory protein, arsR family [Pyrococcus furiosus DSM 3638] Length = 187 Score = 39.5 bits (92), Expect = 0.030 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%) Query: 74 KTERPPKLSRAA-LETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEVGR 129 ++ LS ++ L ++ Y P+T +EI + G + IK L E GL+EEV Sbjct: 11 DPKQIKALSDPTRVKILELLRYH-PMTVSEISRVIGKDKSTIYRHIKALEEAGLVEEV-- 67 Query: 130 RDVPGRPALYGTTDE-FLDYFG 150 + G +YG T FL G Sbjct: 68 -EKIGNETVYGRTALIFLVRIG 88 >MarR_Q8DV74_36-105_PF01047.12 Length = 70 Score = 39.2 bits (91), Expect = 0.032 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 81 LSRAALETLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVG 128 L+ A + TL IA QPI + ++RG + L +GL+ +V Sbjct: 1 LNTAEVHTLVSIAQNQPINLVGLSKVRGISRSAVTQMVSRLESKGLLIKVP 51 >gi|65316950|ref|ZP_00389909.1| COG2345: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 188 Score = 39.2 bits (91), Expect = 0.035 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 101 AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRP-ALYGTTDE----F---LDYFGLK 152 AEI EI + + L + G I R GRP LYG +++ F F + Sbjct: 27 AEILEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRPTYLYGLSEKGEDTFPKEYKQFAID 86 Query: 153 SLDDL 157 L+DL Sbjct: 87 MLEDL 91 >gi|50978532|dbj|BAD34978.1| putative transcriptional repressor [Arthrobacter globiformis] Length = 370 Score = 38.0 bits (88), Expect = 0.071 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEVG 128 + L+R+A+ LA I P +RA++ GV+ + L+ GL+ E+ Sbjct: 1 MAHPNPRTDLTRSAM--LAHIGSNGPTSRADLARELGVSPALVTQHTRELIADGLLVELD 58 Query: 129 RRDVP-GRPA 137 R GRPA Sbjct: 59 HRPSQGGRPA 68 >gi|48849841|ref|ZP_00304084.1| COG1846: Transcriptional regulators [Novosphingobium aromaticivorans DSM 12444] Length = 146 Score = 38.0 bits (88), Expect = 0.077 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%) Query: 56 GYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVNSD 112 GY+L+ + L + L A + TL +I+ ++ E+ + I+ N Sbjct: 12 GYQLRRASAV--MMADLARELADLDLRPAEVTTLLVISENPECSQTEVGQVLAIKRANMV 69 Query: 113 GAIKTLLERGLIEEVGRRDVPGRPALYGTTDE 144 I L++RGL+E RR + GR TD+ Sbjct: 70 PIISRLMDRGLVE---RRRLDGRSHALTLTDQ 98 >gi|47566996|ref|ZP_00237713.1| transcriptional regulator, DeoR family [Bacillus cereus G9241] Length = 210 Score = 37.6 bits (87), Expect = 0.092 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 101 AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRP-ALYGTTDE----F---LDYFGLK 152 AE+ EI + + L + G I R GRP LYG +++ F F + Sbjct: 27 AEVLEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRPTYLYGLSEKGEDTFPKEYKQFAID 86 Query: 153 SLDDL 157 L+DL Sbjct: 87 MLEDL 91 >gi|6460206|gb|AAF11936.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 403 Score = 37.2 bits (86), Expect = 0.15 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 13/91 (14%) Query: 80 KLSRAALETLA---IIAYRQPITRAEIEEIR----GVNSDGAIKTLLERGLI-EEVGRRD 131 L A LE LA +I Q + + +++R G + + L + G I +E G D Sbjct: 51 DLFDAILEALAERNMIPEEQLLEALQADDVRETALGQQIERLMDKLQQDGFIRKEFGDED 110 Query: 132 VPGRP-----ALYGTTDEFLDYFGLKSLDDL 157 G A + TD+ +D+ G KSL DL Sbjct: 111 GQGGAGNPGEATFQLTDKSIDFLGYKSLRDL 141 >gi|51893891|ref|YP_076582.1| transcriptional repressor [Symbiobacterium thermophilum IAM 14863] Length = 391 Score = 37.2 bits (86), Expect = 0.15 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGR-RDVPG 134 +L+R A L+ I R PI+R E+ + G+ ++ LL+ GL+EE G + G Sbjct: 11 KQLNRQA--VLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEKGLGQSSGG 68 Query: 135 RP 136 RP Sbjct: 69 RP 70 >gi|23494670|dbj|BAC19636.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 153 Score = 36.8 bits (85), Expect = 0.17 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP--ITR-AEIEEIRGVNSDGAIK 116 + +P + + LS L L+ +A P I+R AE+E+IR + A+ Sbjct: 12 RVRPALTKLYVLYFRRSANSDLSGPQLTILSRLAEHGPSRISRIAELEDIRMPTASNALH 71 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDE 144 L + L+E + R R TD Sbjct: 72 HLEQLKLVERI-RDTKDRRGVQVQLTDH 98 >gi|59711413|ref|YP_204189.1| N-acetylglucosamine repressor [Vibrio fischeri ES114] Length = 404 Score = 36.8 bits (85), Expect = 0.20 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 91 IIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG--RPALYGT-TDE 144 +I + PI+R A++ ++ + + LLERGLI+EV ++ G R T T Sbjct: 23 LIDQKGPISRIQIADVSQLAPASVTKITRQLLERGLIKEVAQQASTGGRRAISLTTETSP 82 Query: 145 FLD 147 F Sbjct: 83 FHS 85 >gi|1924925|emb|CAA96093.1| xyl repressor [Bacillus megaterium] Length = 388 Score = 36.5 bits (84), Expect = 0.22 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 92 IAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG--RPALYG 140 I P++RA + EI G + TLLE+ I E+G G RP + Sbjct: 24 ILKNSPVSRATLSEITGLNKSTVSSQVNTLLEKDFIFEIGAGQSRGGRRPVMLV 77 >gi|4980601|gb|AAD35204.1| transcriptional regulator, XylR-related [Thermotoga maritima MSB8] Length = 378 Score = 36.5 bits (84), Expect = 0.23 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Query: 88 TLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGR--RDVPGR 135 L +I PI+R++I E+ G + K L++ G I E+G ++ PGR Sbjct: 16 ILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGKNSPGR 68 >gi|6002233|emb|CAB56677.1| putative MarR-family regulatory protein [Streptomyces coelicolor A3(2)] Length = 148 Score = 36.5 bits (84), Expect = 0.26 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKT 117 + + R+LK L+ LA ++ R IT +E+ I GV + + Sbjct: 18 VRAVISRLRRRILKASEVEDLTLGQSSVLARLSDRGSITASELAAIEGVRHQSMTATVTA 77 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDE 144 L GL+E GR L T E Sbjct: 78 LASMGLVERRP-DPDDGRRLLITLTPE 103 >gi|62423215|ref|ZP_00378384.1| COG1846: Transcriptional regulators [Brevibacterium linens BL2] Length = 149 Score = 36.1 bits (83), Expect = 0.29 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 77 RPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVNSDGAIKTLLERGLI 124 R L+ A E LA I QPIT+ ++ + G + L GLI Sbjct: 30 RQFDLTLAQFEALAHIRNFQPITQTDLARGLTVTGGGISRMLSRLESEGLI 80 >gi|68263661|emb|CAI37149.1| putative transcriptional regulator (ArsR family) [Corynebacterium jeikeium K411] Length = 227 Score = 36.1 bits (83), Expect = 0.32 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 95 RQPITRAEIEEIRG---VNSDGAIKTLLERGL--IEEVGRRDVPGRP-ALYGTTDEFLDY 148 P++ ++I E G + ++ GL + E R GRP L+ TD+ Sbjct: 29 HGPVSASDISEAFGLSAAGVRRHLDNIVSDGLAEVVEAPRSGQRGRPAKLFRLTDDGRAE 88 Query: 149 FG 150 FG Sbjct: 89 FG 90 >gi|1591264|gb|AAB98552.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 261 Score = 36.1 bits (83), Expect = 0.33 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 16/81 (19%) Query: 79 PKLSRAALETLAIIAYRQP-ITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG 134 K + + L+ I +QP I + EI E G I+ L++ G ++ GR + Sbjct: 2 KKRNITEFQVLSEIIRKQPHIKQKEIAENLGITVQAVSEHIRNLVKEGYVKSRGRGE--- 58 Query: 135 RPALYGTTDEFLDYFGLKSLD 155 Y T++ GL+ L Sbjct: 59 ----YVVTEK-----GLRKLK 70 >gi|51594904|ref|YP_069095.1| putative transcriptional repressor [Yersinia pseudotuberculosis IP 32953] Length = 337 Score = 35.7 bits (82), Expect = 0.34 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 82 SRAALETLAIIA---YRQPITRAEIEEIRGVNSDGAIKTLLERG----LIEEVGRRDVPG 134 S + E LA +A Y +T+ +I E+ G+ + + LLE+G +I G Sbjct: 31 SMSEEELLARVAWFYYHDGLTQGDIGELLGL-ARLKVSRLLEKGRQSGVIRVQINSRYEG 89 Query: 135 RPALYGTTDEFLDYFGLKSLDDLPPL 160 + +FGLK + LP L Sbjct: 90 ---CLELENTLQQHFGLKHIRILPSL 112 >gi|67985648|gb|EAM73502.1| regulatory protein, MarR [Kineococcus radiotolerans SRS30216] Length = 161 Score = 35.7 bits (82), Expect = 0.37 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 70 ERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT---LLERGLIEE 126 RL + +LS A LA + + P T E+ E V +T L+E+GL+E Sbjct: 41 RRLRAEKSVDELSDAQFSVLAHLFTQGPRTPGELAEAEHVRPPSMTRTIAGLVEQGLVER 100 Query: 127 VGRRDVPGRPALYGTTD 143 G GR L + Sbjct: 101 AGH-PDDGRQVLITVSP 116 >gi|62643261|ref|XP_226993.3| PREDICTED: similar to Nyd-sp12 protein [Rattus norvegicus] Length = 571 Score = 35.7 bits (82), Expect = 0.39 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%) Query: 65 YAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER-- 121 YA + RL + E+ +++A E LA + Y Q I++ E E+ A+ TL R Sbjct: 463 YASLLSRLQRVKEQAQVINQAMAE-LATVPYLQDISQQE-AELLQSLMADAMDTLEGRKN 520 Query: 122 ------GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 I++VGR + LY D FL L++ Sbjct: 521 DKERVWNTIQKVGRIE----DFLYQLEDSFLKTKKLRTAR 556 >gi|18978434|ref|NP_579791.1| hypothetical protein PF2062 [Pyrococcus furiosus DSM 3638] Length = 94 Score = 35.7 bits (82), Expect = 0.44 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 78 PPKLSRAALETLAIIAYRQPITRAEIEEIRG-VNSDGAIKTLLERGLIEEVGRRDVPGRP 136 +L++ + L I +T+ ++ EI G V + IK L ++GLIE R GR Sbjct: 33 KVELTKLERDVLEFILRNGEVTQKKLAEIFGRVKTCRIIKNLEKKGLIE----RKKNGRT 88 Query: 137 AL 138 + Sbjct: 89 YI 90 >gi|42737195|gb|AAS41128.1| xylose repressor [Bacillus cereus ATCC 10987] Length = 364 Score = 35.3 bits (81), Expect = 0.48 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 92 IAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG--RPALYG 140 I PI+RA++ EI G + TLLE I E+G G RP + Sbjct: 4 ILKNSPISRAKLSEITGLNKSTISSQVNTLLENKFIFEIGEGQSRGGRRPVMLV 57 >gi|37527029|ref|NP_930373.1| LsrR DNA-binding protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 335 Score = 35.3 bits (81), Expect = 0.56 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Query: 82 SRAALETLAIIA---YRQPITRAEIEEIRGVNSDGAIKTLLER----GLIEEVGRRDVPG 134 S + E LA IA Y +T+ +I ++ G+ S + LLE+ G+I G Sbjct: 28 SMSEEELLARIAWFYYHDGLTQGDIGDLLGL-SRLKVSRLLEKGRQSGVIRVQINSRYEG 86 Query: 135 RPALYGTTDEFLDYFGLKSLDDLPPL 160 D +F LK + LP L Sbjct: 87 ---CLALEDTLQKHFSLKQVRVLPAL 109 >gi|15100158|ref|NP_114161.2| spermatogenesis associated 16 [Homo sapiens] Length = 569 Score = 34.5 bits (79), Expect = 0.80 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 15/101 (14%) Query: 64 EYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER- 121 +YA + +L + E+ +++A E LA I Y Q I++ E E+ A+ TL R Sbjct: 460 QYASLLSQLQRVKEQSQVINQAMAE-LATIPYLQDISQQE-AELLQSLMADAMDTLEGRR 517 Query: 122 -------GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +I++VG+ + LY D FL L++ Sbjct: 518 NNNERVWNMIQKVGQIE----DFLYQLEDSFLKTKKLRTAR 554 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobac... 204 5e-52 gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 28... 199 2e-50 DUF387_SCPB_22-181_PF04079.5 199 2e-50 gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HT... 199 2e-50 gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanth... 199 2e-50 gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanth... 198 3e-50 gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation ... 198 3e-50 DUF387_Q5KXL1_19-179_PF04079.5 198 4e-50 gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanth... 197 6e-50 gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [R... 197 7e-50 gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR... 197 8e-50 gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [D... 197 1e-49 gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia sola... 195 3e-49 DUF387_SCPB_8-168_PF04079.5 195 4e-49 DUF387_Q83CP9_8-169_PF04079.5 194 5e-49 gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 28... 194 5e-49 gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 28... 194 5e-49 gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR... 194 5e-49 gi|53803499|ref|YP_114626.1| segregation and condensation protei... 194 6e-49 gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitros... 194 6e-49 gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptiona... 193 9e-49 gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein pr... 193 9e-49 gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptiona... 193 1e-48 gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pse... 193 1e-48 DUF387_Q8XZW0_8-167_PF04079.5 193 2e-48 gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptiona... 193 2e-48 DUF387_Q7X2Z5_57-216_PF04079.5 193 2e-48 gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncul... 192 2e-48 gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00... 192 2e-48 DUF387_Q885L8_11-172_PF04079.5 192 2e-48 DUF387_Q88EG7_33-194_PF04079.5 192 2e-48 gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] 192 2e-48 DUF387_Q82TY6_23-182_PF04079.5 192 3e-48 gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator... 192 3e-48 gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromo... 192 3e-48 gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptiona... 192 4e-48 gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 28... 192 4e-48 gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 28... 192 4e-48 gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 28... 191 5e-48 DUF387_Q605S2_5-166_PF04079.5 191 5e-48 gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylell... 190 7e-48 gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbi... 190 7e-48 gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Baci... 190 7e-48 gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clos... 190 8e-48 gi|70728992|ref|YP_258726.1| segregation and condensation protei... 190 9e-48 gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 28... 190 9e-48 DUF387_Q9HZ43_11-172_PF04079.5 190 1e-47 DUF387_Q7NSN3_12-171_PF04079.5 190 1e-47 gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation ... 190 1e-47 gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptiona... 190 1e-47 gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR... 190 1e-47 DUF387_SCPB_20-180_PF04079.5 189 2e-47 gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptiona... 189 2e-47 DUF387_Q6SI35_7-166_PF04079.5 189 2e-47 DUF387_SCPB_18-177_PF04079.5 189 2e-47 DUF387_SCPB_5-166_PF04079.5 189 2e-47 DUF387_Q63TP4_8-167_PF04079.5 189 2e-47 gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 28... 188 3e-47 gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 28... 188 4e-47 DUF387_Q8PK59_20-181_PF04079.5 188 4e-47 gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus lic... 188 4e-47 gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 28... 188 5e-47 gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceano... 188 5e-47 gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptiona... 188 5e-47 gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 28... 187 7e-47 gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptiona... 187 7e-47 DUF387_Q9PAP3_17-178_PF04079.5 187 8e-47 gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregatio... 187 1e-46 DUF387_SCPB_5-166_PF04079.5 187 1e-46 DUF387_SCPB_10-169_PF04079.5 186 1e-46 gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Strep... 186 1e-46 gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Borde... 186 2e-46 gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 28... 186 2e-46 DUF387_Q67NF6_8-166_PF04079.5 186 2e-46 gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 28... 185 2e-46 gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator... 185 2e-46 gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptiona... 185 2e-46 DUF387_SCPB_8-168_PF04079.5 185 3e-46 gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewan... 184 6e-46 gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legio... 184 6e-46 gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Str... 183 9e-46 gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation ... 183 9e-46 DUF387_Q5M621_6-167_PF04079.5 183 9e-46 gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clos... 183 1e-45 DUF387_Q5QX76_8-169_PF04079.5 183 1e-45 DUF387_Q73PC5_1-159_PF04079.5 183 1e-45 DUF387_Q7W9A9_10-171_PF04079.5 183 1e-45 gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Strep... 183 1e-45 gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 28... 183 1e-45 DUF387_Q65HX2_10-169_PF04079.5 183 2e-45 gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 28... 183 2e-45 gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptiona... 183 2e-45 gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Strept... 182 2e-45 DUF387_Q7ZAJ6_10-171_PF04079.5 182 3e-45 DUF387_SCPB_5-166_PF04079.5 182 3e-45 DUF387_Q5ZVJ4_11-172_PF04079.5 182 4e-45 gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] 182 4e-45 gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptiona... 182 4e-45 gi|42526386|ref|NP_971484.1| transcriptional regulator, putative... 181 4e-45 gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 28... 181 5e-45 gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus... 181 5e-45 gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [... 180 7e-45 DUF387_Q7ZAN0_10-169_PF04079.5 180 9e-45 gi|20807774|ref|NP_622945.1| predicted transcriptional regulator... 180 1e-44 gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 28... 180 1e-44 gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xant... 180 1e-44 gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Lept... 180 1e-44 DUF387_Q5WH04_9-169_PF04079.5 180 1e-44 DUF387_SCPB_5-164_PF04079.5 179 2e-44 gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesor... 179 2e-44 gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [K... 179 2e-44 gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 28... 179 2e-44 gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 28... 178 3e-44 DUF387_SCPB_5-166_PF04079.5 178 3e-44 gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptiona... 178 3e-44 DUF387_SCPB_6-167_PF04079.5 178 3e-44 gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactob... 178 3e-44 gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Strep... 178 3e-44 gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 28... 178 3e-44 gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus ... 178 4e-44 gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lacto... 178 4e-44 DUF387_Q98LC4_45-200_PF04079.5 178 4e-44 gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 28... 178 4e-44 gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 28... 178 4e-44 gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptiona... 178 4e-44 DUF387_Q8KF54_10-171_PF04079.5 177 8e-44 DUF387_Q5LQJ0_23-178_PF04079.5 177 8e-44 gi|56679084|gb|AAV95750.1| segregation and condensation protein ... 176 1e-43 gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 28... 176 1e-43 gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptiona... 176 1e-43 gi|56478941|ref|YP_160530.1| putative transcriptional regulator,... 176 1e-43 DUF387_SCPB_5-166_PF04079.5 176 1e-43 gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptiona... 176 2e-43 gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptiona... 176 2e-43 gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR... 176 2e-43 gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Para... 176 2e-43 gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chloro... 176 2e-43 gi|28378542|ref|NP_785434.1| transcription regulator (putative) ... 175 2e-43 gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 28... 175 3e-43 DUF387_SCPB_5-166_PF04079.5 175 3e-43 gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 28... 175 3e-43 gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [E... 175 3e-43 gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 28... 175 3e-43 DUF387_Q84FE4_81-236_PF04079.5 175 4e-43 DUF387_Q5NZ85_11-170_PF04079.5 174 5e-43 gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] 174 5e-43 gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Strep... 174 7e-43 DUF387_SCPB_5-166_PF04079.5 174 8e-43 DUF387_Q5TXY6_13-173_PF04079.5 173 9e-43 gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 28... 173 1e-42 gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 28... 173 1e-42 DUF387_SCPB_8-169_PF04079.5 173 1e-42 DUF387_Q9S231_28-186_PF04079.5 173 1e-42 DUF387_O05669_30-188_PF04079.5 173 2e-42 gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptiona... 173 2e-42 gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae... 173 2e-42 gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptiona... 172 2e-42 DUF387_SCPB_8-168_PF04079.5 172 2e-42 gi|61102014|ref|ZP_00377468.1| segregation and condensation prot... 172 2e-42 gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycoba... 172 2e-42 DUF387_Q74C44_6-165_PF04079.5 172 2e-42 gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [The... 172 3e-42 gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lacto... 172 3e-42 gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Aci... 172 3e-42 DUF387_Q5SK60_9-166_PF04079.5 172 3e-42 DUF387_Q5FKG0_6-167_PF04079.5 171 4e-42 gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptiona... 171 5e-42 gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00... 171 6e-42 DUF387_Q6FDU6_20-179_PF04079.5 170 7e-42 DUF387_Q6N5X0_36-191_PF04079.5 170 7e-42 gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 28... 170 8e-42 gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycob... 170 9e-42 DUF387_Q89KZ6_34-189_PF04079.5 170 1e-41 gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 28... 170 1e-41 gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Cory... 170 1e-41 DUF387_O33209_30-188_PF04079.5 169 2e-41 DUF387_Q6MER5_69-232_PF04079.5 169 2e-41 DUF387_Q7ZAN2_15-173_PF04079.5 169 2e-41 gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 28... 168 3e-41 gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifido... 168 3e-41 DUF387_SCPB_106-268_PF04079.5 168 5e-41 gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Myco... 168 5e-41 gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 28... 168 5e-41 DUF387_Q740D9_34-192_PF04079.5 168 6e-41 gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycopl... 167 9e-41 DUF387_Q5YY85_27-185_PF04079.5 166 1e-40 gi|73662567|ref|YP_301348.1| putative transcriptional regulator ... 166 2e-40 gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesor... 165 3e-40 DUF387_Q8G4K8_52-216_PF04079.5 165 5e-40 DUF387_SCPB_24-186_PF04079.5 164 6e-40 DUF387_Q981I4_42-200_PF04079.5 164 7e-40 gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psy... 164 8e-40 gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdello... 164 9e-40 DUF387_SCPB_15-176_PF04079.5 163 9e-40 gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Myc... 163 9e-40 gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregatio... 163 9e-40 DUF387_Q8YGS3_23-178_PF04079.5 163 1e-39 DUF387_Q98A15_35-195_PF04079.5 163 1e-39 gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesor... 163 1e-39 DUF387_Q98P19_35-194_PF04079.5 163 1e-39 gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptiona... 163 2e-39 gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesor... 163 2e-39 DUF387_SCPB_4-165_PF04079.5 163 2e-39 gi|47459311|ref|YP_016173.1| predicted transcriptional regulator... 163 2e-39 gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodo... 162 2e-39 gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisser... 162 3e-39 gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 28... 162 3e-39 gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 28... 161 3e-39 gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 28... 161 4e-39 gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Brady... 161 5e-39 gi|68263552|emb|CAI37040.1| segregation and condensation protein... 161 6e-39 gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Meso... 161 6e-39 gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Noca... 161 6e-39 DUF387_Q6MLN0_104-265_PF04079.5 160 8e-39 DUF387_Q9F5B4_43-202_PF04079.5 160 9e-39 gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR... 160 9e-39 DUF387_O52287_40-199_PF04079.5 160 1e-38 gi|75675995|ref|YP_318416.1| chromosome segregation and condensa... 160 1e-38 gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] 160 1e-38 DUF387_Q6LBD4_2-160_PF04079.5 160 1e-38 gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putat... 160 1e-38 DUF387_Q8KGW4_35-195_PF04079.5 160 1e-38 gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] 160 1e-38 gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [M... 159 2e-38 gi|19552641|ref|NP_600643.1| predicted transcriptional regulator... 159 2e-38 gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [M... 159 2e-38 gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptiona... 159 3e-38 gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Olig... 158 3e-38 gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [M... 158 6e-38 DUF387_Q8NQK9_9-167_PF04079.5 157 7e-38 gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leif... 157 7e-38 gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesor... 157 7e-38 gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphy... 157 7e-38 DUF387_SCPB_5-157_PF04079.5 157 8e-38 gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphy... 157 8e-38 DUF387_Q6AGG0_22-189_PF04079.5 157 8e-38 gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [A... 157 9e-38 gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Trepon... 156 1e-37 gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Coryn... 156 1e-37 gi|71083666|ref|YP_266386.1| segregation and condensation protei... 156 1e-37 DUF387_Q981J7_40-198_PF04079.5 156 1e-37 DUF387_SCPB_23-185_PF04079.5 156 1e-37 DUF387_Q6NHE4_7-170_PF04079.5 156 2e-37 DUF387_O83471_18-180_PF04079.5 155 3e-37 DUF387_Q7UE48_165-325_PF04079.5 155 3e-37 gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 28... 155 4e-37 gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrob... 153 1e-36 DUF387_Q92Q27_30-185_PF04079.5 153 2e-36 DUF387_SCPB_7-168_PF04079.5 153 2e-36 gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycop... 153 2e-36 DUF387_Q8UEP8_40-195_PF04079.5 152 3e-36 gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [F... 152 3e-36 DUF387_Q7P2S1_5-163_PF04079.5 151 4e-36 gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sino... 151 4e-36 gi|57284636|gb|AAW36730.1| segregation and condensation protein ... 151 4e-36 gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureapla... 150 9e-36 gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulob... 150 1e-35 gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycop... 149 2e-35 DUF387_SCPB_188-349_PF04079.5 149 2e-35 DUF387_Q5ZZQ3_4-166_PF04079.5 149 3e-35 DUF387_Q9A6S9_11-166_PF04079.5 148 3e-35 gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [M... 148 6e-35 gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methan... 148 6e-35 DUF387_SCPB_5-157_PF04079.5 147 9e-35 gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusob... 146 1e-34 gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] 146 2e-34 DUF387_Q8KVW0_30-188_PF04079.5 146 2e-34 gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methan... 146 2e-34 gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Myc... 145 3e-34 gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 28... 145 3e-34 gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 28... 145 3e-34 DUF387_Q8TI25_8-157_PF04079.5 145 5e-34 DUF387_Q6MTL7_7-171_PF04079.5 143 1e-33 gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Myco... 143 1e-33 gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 28... 143 2e-33 DUF387_O28692_5-154_PF04079.5 142 3e-33 gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 28... 141 5e-33 gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archae... 141 7e-33 gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinoc... 137 1e-31 gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 28... 136 2e-31 gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 28... 135 5e-31 DUF387_Q9RTA4_13-171_PF04079.5 135 5e-31 gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (... 132 2e-30 gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyroco... 132 3e-30 gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 28... 132 3e-30 gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 28... 132 3e-30 gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synec... 132 3e-30 DUF387_P74610_5-159_PF04079.5 132 3e-30 gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] 131 4e-30 gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptiona... 131 5e-30 DUF387_Q9V1Y8_8-160_PF04079.5 131 5e-30 gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Proc... 130 1e-29 gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptiona... 130 1e-29 DUF387_Q8YLY0_7-157_PF04079.5 128 3e-29 DUF387_Q7V7Q5_20-168_PF04079.5 128 5e-29 gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeo... 127 1e-28 gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Syn... 126 1e-28 DUF387_Q7NJH4_8-156_PF04079.5 126 2e-28 DUF387_Q5N339_7-162_PF04079.5 125 4e-28 gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyroco... 125 4e-28 gi|57160221|dbj|BAD86151.1| predicted transcription regulator, Y... 124 8e-28 gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Syne... 123 1e-27 DUF387_Q7U6P4_8-162_PF04079.5 123 2e-27 DUF387_Q5JDN0_8-160_PF04079.5 122 2e-27 DUF387_Q6F0R6_7-169_PF04079.5 122 3e-27 gi|50365366|ref|YP_053791.1| chromosomal segregation/condensatio... 122 3e-27 gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator c... 120 1e-26 gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation ... 119 2e-26 gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptiona... 119 2e-26 gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putat... 119 2e-26 gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluco... 119 3e-26 DUF387_Q5FQ51_2-103_PF04079.5 118 5e-26 DUF387_Q7VC16_3-151_PF04079.5 117 9e-26 DUF387_Q7UPG2_127-292_PF04079.5 115 3e-25 gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermo... 114 8e-25 gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Proch... 113 1e-24 DUF387_Q9WYW4_5-159_PF04079.5 113 1e-24 DUF387_Q7V1G4_3-155_PF04079.5 113 1e-24 gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongat... 113 2e-24 gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. ... 111 8e-24 DUF387_Q8DKL3_12-162_PF04079.5 110 9e-24 gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisse... 105 4e-22 DUF387_Q9K079_356-484_PF04079.5 104 9e-22 DUF387_Q6L0G6_6-153_PF04079.5 100 2e-20 gi|48430671|gb|AAT43536.1| thiosulfate sulfurtransferase [Picrop... 100 2e-20 gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma v... 97 1e-19 DUF387_Q97B36_13-163_PF04079.5 95 5e-19 DUF387_Q9HKK2_10-161_PF04079.5 90 2e-17 gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Ther... 90 2e-17 gi|68141196|gb|EAM94485.1| hypothetical protein FaciDRAFT_1595 [... 81 1e-14 gi|13475236|ref|NP_106800.1| hypothetical protein msr6263 [Mesor... 65 6e-10 gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptiona... 59 5e-08 gi|24379105|ref|NP_721060.1| putative transcriptional regulator ... 50 2e-05 gi|68183625|ref|ZP_00556599.1| hypothetical protein JannDRAFT_05... 49 3e-05 Sequences not found previously or not previously below threshold: MarR_Q8DV74_36-105_PF01047.12 46 3e-04 gi|50978532|dbj|BAD34978.1| putative transcriptional repressor [... 40 0.020 gi|56461561|ref|YP_156842.1| Primosomal protein A (replication f... 40 0.023 gi|38234449|ref|NP_940216.1| Putative DNA-biding protein [Coryne... 39 0.026 gi|55232751|gb|AAV48170.1| transcription regulator [Haloarcula m... 39 0.032 gi|51893891|ref|YP_076582.1| transcriptional repressor [Symbioba... 38 0.11 gi|1591264|gb|AAB98552.1| conserved hypothetical protein [Methan... 38 0.11 gi|48849841|ref|ZP_00304084.1| COG1846: Transcriptional regulato... 38 0.11 gi|4980601|gb|AAD35204.1| transcriptional regulator, XylR-relate... 38 0.12 gi|62179273|ref|YP_215690.1| transcriptional repressor of nag (N... 37 0.13 gi|59711413|ref|YP_204189.1| N-acetylglucosamine repressor [Vibr... 37 0.13 gi|11497829|ref|NP_069051.1| hypothetical protein AF0213 [Archae... 37 0.15 gi|18976604|ref|NP_577961.1| transcription regulatory protein, a... 36 0.23 gi|65316950|ref|ZP_00389909.1| COG2345: Predicted transcriptiona... 36 0.23 gi|6002233|emb|CAB56677.1| putative MarR-family regulatory prote... 36 0.28 gi|74018911|ref|ZP_00689530.1| Filamentation induced by cAMP pro... 36 0.28 gi|67985648|gb|EAM73502.1| regulatory protein, MarR [Kineococcus... 36 0.29 gi|74311204|ref|YP_309623.1| transcriptional repressor of nag (N... 36 0.34 gi|68262921|emb|CAI36409.1| putative transcriptional regulator (... 36 0.37 gi|6460206|gb|AAF11936.1| conserved hypothetical protein [Deinoc... 36 0.40 Arginosuc_synth_ASSY_11-400_PF00764.8 36 0.43 gi|24216865|ref|NP_714346.1| argininosuccinate synthase [Leptosp... 36 0.43 gi|47223488|emb|CAF97975.1| unnamed protein product [Tetraodon n... 36 0.45 gi|23494670|dbj|BAC19636.1| putative transcription regulator [Co... 35 0.47 gi|17431715|emb|CAD18392.1| HYPOTHETICAL PROTEIN [Ralstonia sola... 35 0.48 gi|71366923|ref|ZP_00657458.1| conserved hypothetical protein [N... 35 0.50 gi|1924925|emb|CAA96093.1| xyl repressor [Bacillus megaterium] 35 0.50 gi|68189513|gb|EAN04179.1| ROK [Mesorhizobium sp. BNC1] 35 0.52 TrmB_O30026_30-97_PF01978.8 35 0.59 gi|68174065|ref|ZP_00547336.1| regulatory protein, MarR [Frankia... 35 0.63 gi|68388023|ref|XP_692950.1| PREDICTED: similar to beta-spectrin... 35 0.63 gi|67675838|ref|ZP_00472592.1| ROK [Chromohalobacter salexigens ... 35 0.64 MarR_Q8XQI4_23-83_PF01047.12 35 0.71 gi|51594904|ref|YP_069095.1| putative transcriptional repressor ... 35 0.71 gi|62423215|ref|ZP_00378384.1| COG1846: Transcriptional regulato... 35 0.71 RNA_pol_Rpb2_6_Q8TXI7_159-536_PF00562.15 35 0.74 gi|20094124|ref|NP_613971.1| DNA-directed RNA polymerase second-... 35 0.74 gi|10173314|dbj|BAB04419.1| transcriptional repressor of the xyl... 34 0.80 gi|30248277|ref|NP_840347.1| Site-specific recombinase [Nitrosom... 34 0.97 gi|46203457|ref|ZP_00051497.2| COG1846: Transcriptional regulato... 34 0.98 gi|18978434|ref|NP_579791.1| hypothetical protein PF2062 [Pyroco... 34 0.99 >gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobacillus kaustophilus HTA426] Length = 217 Score = 204 bits (521), Expect = 5e-52 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 19 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 78 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 79 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 138 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 139 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 179 >gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 281 [Moorella thermoacetica ATCC 39073] Length = 195 Score = 199 bits (508), Expect = 2e-50 Identities = 87/160 (54%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +E LLFVAG P+S++ LA L + P GL++ VAGGY++ Sbjct: 11 AALECLLFVAGGPVSVDSLAACLGVKPGDVDELAAELQELYAREERGLQIRAVAGGYQMC 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A Y E LL+ E P LSRAALETLAIIAYRQP+TR E+E IRGV DG + TL+ Sbjct: 71 TRPEFASYCEALLRPELPA-LSRAALETLAIIAYRQPVTRTEMEYIRGVKVDGVLNTLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EVGR++ PGRP LYGTT +FL++FGLK L +LPPL Sbjct: 130 RGLVQEVGRKEAPGRPILYGTTPKFLEFFGLKDLKELPPL 169 >DUF387_SCPB_22-181_PF04079.5 Length = 160 Score = 199 bits (508), Expect = 2e-50 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 1 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 61 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 121 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 160 >gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HTH-type), YPUH B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] Length = 202 Score = 199 bits (508), Expect = 2e-50 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 22 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 81 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 82 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 141 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 142 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 181 >gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 401 Score = 199 bits (507), Expect = 2e-50 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADLHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 424 Score = 198 bits (505), Expect = 3e-50 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREACAERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EERDWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation and condensation protein ScpB [Ralstonia eutropha JMP134] Length = 311 Score = 198 bits (505), Expect = 3e-50 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 28 VLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALASGWRFQS 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE EY++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S IK L + Sbjct: 88 RPEMREYLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLED 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL++LD+LPPL Sbjct: 147 RSWIEVIGHRDVPGRPALYATTKAFLDDLGLRTLDELPPL 186 >DUF387_Q5KXL1_19-179_PF04079.5 Length = 161 Score = 198 bits (504), Expect = 4e-50 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 1 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 61 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 121 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 161 >gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 412 Score = 197 bits (503), Expect = 6e-50 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 21 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 80 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 81 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 139 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 140 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 181 >gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [Ralstonia metallidurans CH34] Length = 302 Score = 197 bits (503), Expect = 7e-50 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLRVGDLRRLFADDVGADTIRVLLEELRNDWQQRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE E+++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S +K L + Sbjct: 69 RPEMREFLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVVKKLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL+SLD+LPPL Sbjct: 128 RDWIEVIGHRDVPGRPALYATTKAFLDDLGLRSLDELPPL 167 >gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR00281 [Pseudomonas putida KT2440] Length = 277 Score = 197 bits (502), Expect = 8e-50 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 33 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 92 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV IKT Sbjct: 93 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 152 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 194 >gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [Desulfitobacterium hafniense DCB-2] Length = 196 Score = 197 bits (501), Expect = 1e-49 Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EALLFVA +PL+ E+LAE+L++ G+ L+EV GY+L Sbjct: 9 AGVEALLFVADKPLTKERLAEILQLSSEDIAEILYDLKQRYAAPASGVTLIEVNEGYKLG 68 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE + Y+E L LS AALE LAIIAY+QP+TR E++ IRGV SD ++ TL+E Sbjct: 69 TKPEMSAYIETLYHQP-AQGLSGAALEVLAIIAYKQPVTRGEVDFIRGVQSDRSLGTLVE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +GL+++VGR++ PGRP LYGTT++FL +FGLKSL++LP L Sbjct: 128 KGLVKDVGRKEGPGRPILYGTTEQFLIHFGLKSLEELPDL 167 >gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 304 Score = 195 bits (497), Expect = 3e-49 Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 9 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV IK + + Sbjct: 69 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 128 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 167 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 195 bits (496), Expect = 4e-49 Identities = 86/161 (53%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E +S EQ+A++LEI GL++V+ A YR Sbjct: 1 SIIEGLLFVSGDEGISPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 61 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 121 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 161 >DUF387_Q83CP9_8-169_PF04079.5 Length = 162 Score = 194 bits (495), Expect = 5e-49 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 2 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + + P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 62 QARPDFSPWLQRLWEKK-PARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 121 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 162 >gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 281 [Azotobacter vinelandii AvOP] Length = 263 Score = 194 bits (495), Expect = 5e-49 Identities = 87/162 (53%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L AG PLSLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAWLLAAGRPLSLERLGELFEEGERPEPACLRDALAILARSCQGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + +A +V RL + ERP + SRA LETLA+IAYRQPI+R EIEE+RGV S I+TL Sbjct: 72 QVRERFAPWVGRLWE-ERPQRYSRALLETLALIAYRQPISRGEIEEVRGVAVSSNIIRTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG R+VPGRPAL+ TT FLD+F LKSLD+LPPL Sbjct: 131 QEREWIRVVGYREVPGRPALFATTRAFLDHFNLKSLDELPPL 172 >gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 281 [Nitrosomonas eutropha C71] Length = 216 Score = 194 bits (495), Expect = 5e-49 Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L EPL++ L +L E G+ELV VAGG+R Q+ Sbjct: 26 VVEAALLTTSEPLTINDLKKLFEGNIDKKMLHESLTILDEKWCNSGIELVLVAGGWRFQS 85 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 86 KPEMQIFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQVIKTLES 144 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+R++PG+P LY TT FLD L+SL+ LP L Sbjct: 145 RGWIETIGQREIPGKPYLYATTRHFLDDLNLQSLEQLPSL 184 >gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR00281 [Coxiella burnetii RSA 493] Length = 209 Score = 194 bits (495), Expect = 5e-49 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 9 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + + P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 69 QARPDFSPWLQRLWEKK-PARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 128 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 169 >gi|53803499|ref|YP_114626.1| segregation and condensation protein B [Methylococcus capsulatus str. Bath] Length = 201 Score = 194 bits (494), Expect = 6e-49 Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L P LEL +VA GYR Sbjct: 5 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 65 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 123 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 124 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 166 >gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitrosomonas europaea ATCC 19718] Length = 220 Score = 194 bits (494), Expect = 6e-49 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 24 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 83 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 84 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 142 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 143 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 182 >gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia pseudomallei Pasteur] Length = 456 Score = 193 bits (493), Expect = 9e-49 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein protein TIGR00281 [Bacillus cereus G9241] Length = 190 Score = 193 bits (493), Expect = 9e-49 Identities = 84/161 (52%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E + EQ+A++L I GL++V+ A YR Sbjct: 8 SIIEGLLFVSGDEGIYPEQIAKVLGIEGNEVINILEEMQKECEGAHRGLQIVQYAKVYRF 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 68 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 128 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 168 >gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Microbulbifer degradans 2-40] Length = 352 Score = 193 bits (492), Expect = 1e-48 Identities = 82/162 (50%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE + AGE LS++++ L + P G ELVEVA G+R Sbjct: 11 IIEGAILAAGEALSIDRILSLFDENEQPEKDDIKQALLAIQEKNAGRGFELVEVASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + A +V RL E+P K SRA LETLA++AYRQPITR +IE++RGV S IKTL Sbjct: 71 QVVEDIAMWVNRLW-DEKPQKYSRALLETLALVAYRQPITRGDIEDVRGVAVSSHIIKTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER ++ VG RDVPGRPALY TT +FLDYF LKSLD+LP L Sbjct: 130 VEREWVKVVGHRDVPGRPALYATTRQFLDYFNLKSLDELPTL 171 >gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 193 bits (492), Expect = 1e-48 Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 172 >DUF387_Q8XZW0_8-167_PF04079.5 Length = 160 Score = 193 bits (491), Expect = 2e-48 Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 2 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV IK + + Sbjct: 62 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 121 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 160 >gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia fungorum LB400] Length = 408 Score = 193 bits (491), Expect = 2e-48 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L +L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGELRKLFADGVSADTVRTLLEDLRQDWSGRGVELVGLASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRSYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT +FLD GLK+LD+LPPL Sbjct: 128 RNWIEVIGHRDVPGRPALYATTRQFLDDLGLKALDELPPL 167 >DUF387_Q7X2Z5_57-216_PF04079.5 Length = 160 Score = 193 bits (491), Expect = 2e-48 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 1 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 61 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 121 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 158 >gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 226 Score = 192 bits (490), Expect = 2e-48 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 57 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 116 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 117 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 176 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 177 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 214 >gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00281 [uncultured bacterium 105] Length = 225 Score = 192 bits (490), Expect = 2e-48 Identities = 77/158 (48%), Positives = 101/158 (63%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 8 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 67 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 68 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 128 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLPN 165 >DUF387_Q885L8_11-172_PF04079.5 Length = 162 Score = 192 bits (490), Expect = 2e-48 Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL E P EL EVA GYRL Sbjct: 2 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 62 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 121 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 162 >DUF387_Q88EG7_33-194_PF04079.5 Length = 162 Score = 192 bits (489), Expect = 2e-48 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 1 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV IKT Sbjct: 61 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 120 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 162 >gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] Length = 333 Score = 192 bits (489), Expect = 2e-48 Identities = 85/162 (52%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + G EL EVA GYRL Sbjct: 12 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV +KTL Sbjct: 72 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 131 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 172 >DUF387_Q82TY6_23-182_PF04079.5 Length = 160 Score = 192 bits (489), Expect = 3e-48 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 2 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 62 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 121 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 160 >gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 192 bits (489), Expect = 3e-48 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EPL+ +L + E G+EL++VA G+R QT Sbjct: 15 VLEAALLAAIEPLTPAELKRMFEHELSNETLRRALDELRAAWHGRGVELIQVADGWRFQT 74 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + E ++ RL K E+PP+ SRA LETLAIIAYRQP+TR +IE++RGV + IK L E Sbjct: 75 RAEMQPWLSRL-KNEKPPRYSRAVLETLAIIAYRQPVTRGDIEDVRGVAVNPNIIKALEE 133 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPAL+GTT FL GL++L +LPPL Sbjct: 134 RGWIEAIGHRDVPGRPALFGTTGHFLSDLGLRTLSELPPL 173 >gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromobacterium violaceum ATCC 12472] Length = 210 Score = 192 bits (488), Expect = 3e-48 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 13 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 73 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 132 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 171 >gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia cepacia R18194] Length = 343 Score = 192 bits (488), Expect = 4e-48 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 281 [Burkholderia ambifaria AMMD] Length = 340 Score = 192 bits (488), Expect = 4e-48 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 281 [Xylella fastidiosa Ann-1] Length = 254 Score = 192 bits (488), Expect = 4e-48 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCTERSVELVEVASGFRF 77 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 78 QLKADVHAWVSPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 281 [Burkholderia cenocepacia HI2424] Length = 345 Score = 191 bits (487), Expect = 5e-48 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >DUF387_Q605S2_5-166_PF04079.5 Length = 162 Score = 191 bits (487), Expect = 5e-48 Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L P LEL +VA GYR Sbjct: 1 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 61 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 120 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 162 >gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylella fastidiosa 9a5c] Length = 327 Score = 190 bits (485), Expect = 7e-48 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRF 77 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 78 QLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbiobacterium thermophilum IAM 14863] Length = 219 Score = 190 bits (485), Expect = 7e-48 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 9 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 69 RPEAAEYVERLLQPKSR-GLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP Sbjct: 128 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPP 165 >gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Bacillus subtilis subsp. subtilis str. 168] Length = 197 Score = 190 bits (485), Expect = 7e-48 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK ++A Y+++L++ LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L+ Sbjct: 70 STKKDFAPYLKKLIEVPS-KGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 129 AKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 169 >gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 195 Score = 190 bits (485), Expect = 8e-48 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 20 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 79 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 80 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 139 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 140 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 180 >gi|70728992|ref|YP_258726.1| segregation and condensation protein B [Pseudomonas fluorescens Pf-5] Length = 343 Score = 190 bits (484), Expect = 9e-48 Identities = 84/162 (51%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P SLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQSLERLFELFEEAERPDPAVFKKALALLGKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIREKFAPWVGRLWE-ERPQRYSRAMLETMALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 281 [Burkholderia vietnamiensis G4] Length = 340 Score = 190 bits (484), Expect = 9e-48 Identities = 80/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP +++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHFLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >DUF387_Q9HZ43_11-172_PF04079.5 Length = 162 Score = 190 bits (484), Expect = 1e-47 Identities = 85/162 (52%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + G EL EVA GYRL Sbjct: 2 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV +KTL Sbjct: 62 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 121 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 162 >DUF387_Q7NSN3_12-171_PF04079.5 Length = 160 Score = 190 bits (483), Expect = 1e-47 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 2 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 62 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 121 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 160 >gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation and condensation protein ScpB [Dechloromonas aromatica RCB] Length = 178 Score = 190 bits (483), Expect = 1e-47 Identities = 76/160 (47%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EP++ + ++ + +EL+++A G+R +T Sbjct: 9 VLEAALLAAREPMTPSDMKKMFDEEFSSETLRKLLDQLREEWAERPVELIQLASGWRFRT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 + EY Y+ERL ERPPK SRA LETLAIIAYRQP+TR +IEEIRGV +KTL E Sbjct: 69 RAEYLPYIERL-NPERPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVAVNTNVVKTLEE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT +FLD GL+S+ +LPPL Sbjct: 128 RGWIDVVGHRDTPGRPALFATTKQFLDDLGLRSVSELPPL 167 >gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus casei ATCC 334] Length = 206 Score = 190 bits (483), Expect = 1e-47 Identities = 79/160 (49%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRLQ 60 +EA+L+ AGE ++L +LA +LEI GL+L + A Y L Sbjct: 5 LEAILYTAGESGVTLGELAGILEISESAMRQQLDAYRQRLAADDQRGLQLQQFADRYYLL 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKP YA +++ LS+AALE LAIIAY+QPITR EI+EIRGV S GA+ TL Sbjct: 65 TKPAYAPAIKKYFAGPPAAGLSQAALEVLAIIAYQQPITRIEIDEIRGVQSSGALTTLAA 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+E GR++ PGRP LY TT FLDYFGL L DLPPL Sbjct: 125 RQLIKEAGRKEAPGRPMLYATTQFFLDYFGLNRLADLPPL 164 >gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR00281 [Enterococcus faecalis V583] Length = 201 Score = 190 bits (483), Expect = 1e-47 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 + IEA+LFV GE + LE+LA LLE L ++EV + Sbjct: 5 SQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFV 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L Sbjct: 65 LTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 125 VARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 166 >DUF387_SCPB_20-180_PF04079.5 Length = 161 Score = 189 bits (482), Expect = 2e-47 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 1 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 61 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 121 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 161 >gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pseudomonas fluorescens PfO-1] Length = 337 Score = 189 bits (482), Expect = 2e-47 Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +++EA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 11 SLLEAFLLASGKPQSLERLYELFEEGERPEPPVFKKALTLLGKSCEGRAFELKEVASGYR 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV +KT Sbjct: 71 LQIREKFAPWVGRLWE-ERPQRYSRALLETMALIAYRQPITRGEIEDVRGVAVNTNIVKT 129 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 130 LMEREWIRIVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >DUF387_Q6SI35_7-166_PF04079.5 Length = 160 Score = 189 bits (481), Expect = 2e-47 Identities = 77/158 (48%), Positives = 101/158 (63%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 2 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 62 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 122 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLPN 159 >DUF387_SCPB_18-177_PF04079.5 Length = 160 Score = 189 bits (481), Expect = 2e-47 Identities = 77/160 (48%), Positives = 113/160 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 1 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 61 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ +LP L Sbjct: 121 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIKELPSL 160 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 189 bits (481), Expect = 2e-47 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 + IEA+LFV GE + LE+LA LLE L ++EV + Sbjct: 1 SQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L Sbjct: 61 LTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 121 VARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 162 >DUF387_Q63TP4_8-167_PF04079.5 Length = 160 Score = 189 bits (481), Expect = 2e-47 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 2 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 62 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 121 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 160 >gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 281 [Chromohalobacter salexigens DSM 3043] Length = 287 Score = 188 bits (480), Expect = 3e-47 Identities = 77/162 (47%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 + EA L AGEPL+ E+L L + P LELVE A G+++ Sbjct: 11 VCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQV 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + ++ ++ RL ERP + SRA LETLA+IAYRQP+TR +IEE+RGV+ S ++TL Sbjct: 71 RIRARFSPWISRLW-DERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG I VG+RDVPGRP++Y TT FLD FGLK+LD LPP+ Sbjct: 130 TERGWIRVVGQRDVPGRPSVYATTRTFLDDFGLKTLDALPPM 171 >gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 281 [Shewanella denitrificans OS-217] Length = 206 Score = 188 bits (479), Expect = 4e-47 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L + G++LV+VA GYR Sbjct: 15 LIEASLFVLAKPMTIKALKETVLADFDVSRKRIQEVIDELQQDYQERGVQLVKVASGYRF 74 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE+IRGV S IK L Sbjct: 75 QTQELLSPYLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQIRGVAVSSHIIKNL 133 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG +DVPGRPALY TT++FL YFGL L DLP L Sbjct: 134 ADRHWIKSVGHKDVPGRPALYATTNDFLAYFGLTKLADLPQL 175 >DUF387_Q8PK59_20-181_PF04079.5 Length = 162 Score = 188 bits (479), Expect = 4e-47 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 2 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 62 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 162 >gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus licheniformis ATCC 14580] Length = 197 Score = 188 bits (479), Expect = 4e-47 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L+ Sbjct: 70 STKKEFAVYLKKLIEAPS-KGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 129 AKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 169 >gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 281 [Methylobacillus flagellatus KT] Length = 184 Score = 188 bits (478), Expect = 5e-47 Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L AGEPLSLE L E +ELV+VA G+R Q Sbjct: 13 VLEAVLLTAGEPLSLEMLLRPFEGRMERATLRMLLDELRQEWQGRSMELVQVASGWRFQA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + + A ++ RL ERP + SRAALETLAIIAYRQP+TR +IEEIRGV + ++ LE Sbjct: 73 RADLAPFIARL-NPERPMRYSRAALETLAIIAYRQPVTRGDIEEIRGVAVNPNIMRQFLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R I+ VG+RDVPGRP+LY TT FLD GL+SL +LPP+ Sbjct: 132 RNWIDIVGQRDVPGRPSLYATTKTFLDDLGLRSLSELPPI 171 >gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceanobacillus iheyensis HTE831] Length = 192 Score = 188 bits (478), Expect = 5e-47 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 8 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 68 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 128 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 168 >gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rubrivivax gelatinosus PM1] Length = 261 Score = 188 bits (478), Expect = 5e-47 Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L +L L + G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLRELRTLFDDQLGPDTLRVLLDELARDWEDRGVELVAVANGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE EY++RL E+PP+ +RA LETLAIIAYRQP+TR +IE+IRGV +K L + Sbjct: 69 RPELREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSQLLKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G R+ PGRPAL+ TT +FLD GL +L+ LP L Sbjct: 128 RGWIEAIGHRETPGRPALFATTRQFLDDLGLATLEQLPAL 167 >gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 281 [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 187 bits (476), Expect = 7e-47 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E LLF+A PL++E++ + G+ L EVAGG++L+T Sbjct: 125 VVETLLFLAERPLTVEEMRAASGVDVERLEKALDKLSGHYREGPCGIVLHEVAGGWQLRT 184 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P+ +++ R LK +P +L+RAALETLAIIAYRQP+TR EIE+IRGV+ +K LLER Sbjct: 185 SPDNSDFARRFLK-VKPQRLTRAALETLAIIAYRQPVTRPEIEDIRGVDCGAVVKALLER 243 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L++ +G+++ PGRP LYGTT EFL++F LK L LP L Sbjct: 244 KLVKILGKKEEPGRPILYGTTREFLEFFALKDLASLPTL 282 >gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 199 Score = 187 bits (476), Expect = 7e-47 Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFV+G E +S++ ++ + L++ E YR Sbjct: 5 SQIEALLFVSGDEGISVKNMSIITGFDRSAIQGLLEELVLKYDTDLSSALQIRESDDVYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKPE V++ + LS+A LETL I+AY+QPITR EI+ IRGV S G ++ L Sbjct: 65 LVTKPELGGTVKQYFDSPVNATLSQAQLETLVIVAYKQPITRVEIDTIRGVQSSGTLQKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ EVGR+D PGRP ++GTTDEFLDYFGLKS+++LPPL Sbjct: 125 ALRQLVHEVGRKDEPGRPIMFGTTDEFLDYFGLKSIEELPPL 166 >DUF387_Q9PAP3_17-178_PF04079.5 Length = 162 Score = 187 bits (476), Expect = 8e-47 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 2 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 62 QLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 162 >gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregation and condensation protein ScpB [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 187 bits (475), Expect = 1e-46 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+LF + EPL ++L L E+ G+ L EVAGG++++ Sbjct: 10 ARLEAVLFSSDEPLRFDRLQALFEVETTVLRQALQELMVEYAQDNRGVVLQEVAGGFQIR 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA ++ +L R +LS+AA E+LAIIAYRQP+TRAEIE +RGV+S G ++ L+E Sbjct: 70 TRAEYAAWILKL-NKSRVTRLSKAATESLAIIAYRQPVTRAEIEYLRGVDSGGVVRMLME 128 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L++ VG++DVPGRP LYGT+ FL++FGLK L +LP L Sbjct: 129 KQLVKIVGKKDVPGRPLLYGTSRHFLEFFGLKDLSELPNL 168 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 187 bits (475), Expect = 1e-46 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 + IEALLFVAGE LSL LA +L + P L L+E A YR Sbjct: 1 SQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ L Sbjct: 61 LVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 121 LAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 159 >DUF387_SCPB_10-169_PF04079.5 Length = 160 Score = 186 bits (474), Expect = 1e-46 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK ++A Y+++L++ LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L+ Sbjct: 61 STKKDFAPYLKKLIEVPS-KGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLV 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 120 AKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 160 >gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Streptococcus pyogenes SSI-1] Length = 183 Score = 186 bits (474), Expect = 1e-46 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 + IEALLFVAGE LSL LA +L + P L L+E A YR Sbjct: 5 SQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ L Sbjct: 65 LVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 125 LAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 163 >gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Bordetella parapertussis 12822] Length = 364 Score = 186 bits (473), Expect = 2e-46 Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E L A +P+ ++ +L GLELV++A G+R Sbjct: 11 VLETALLCASQPMQFAEMRKLFGDDQDIDNTALRAWLEALQAQWNERGLELVQLASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+IRGV S +K L Sbjct: 71 QSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 130 EDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 171 >gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 281 [Shewanella baltica OS155] Length = 198 Score = 186 bits (473), Expect = 2e-46 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS + L + L++ G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLDVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLPPL Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPPL 171 >DUF387_Q67NF6_8-166_PF04079.5 Length = 159 Score = 186 bits (473), Expect = 2e-46 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 2 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 62 RPEAAEYVERLLQPKSR-GLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP Sbjct: 121 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPP 158 >gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 281 [Shewanella frigidimarina NCIMB 400] Length = 245 Score = 185 bits (472), Expect = 2e-46 Identities = 74/162 (45%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +PLS++ + E L + G++LV++A GYR Sbjct: 12 LIEASLFVLAKPLSVKAIKETVLADFSVSRTRIQETLDELQQDYQERGVQLVKIASGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + + P K SRA LETLA+IAYRQP+TR +IE IRGV S IK+L Sbjct: 72 QTQEILSPYLQPLWQEKSP-KYSRATLETLAVIAYRQPVTRGDIEYIRGVAISSHIIKSL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPG+PALY TT FLDYF L L DLP L Sbjct: 131 ADRQWIKVVGHKEVPGKPALYATTPAFLDYFNLTKLADLPAL 172 >gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator containing the HTH domain [Idiomarina loihiensis L2TR] Length = 190 Score = 185 bits (472), Expect = 2e-46 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 9 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L + E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 69 QTRAELGQRLAGLWQ-EKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 128 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 169 >gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Chloroflexus aurantiacus] Length = 209 Score = 185 bits (472), Expect = 2e-46 Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLFVA EP++L+QL +L++ G+ L + Sbjct: 40 LIEALLFVAAEPMTLDQLTRILDVEAAEVVNAIDELSTIYAQR--GIRLQRHNDHVMFVS 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 PE A + R L ++ +LS AALE LAIIAYRQPITRA+I+ IRGV+S A++ LL R Sbjct: 98 APEAAPTIRRFLGAQQNQRLSHAALENLAIIAYRQPITRAQIDAIRGVDSSAALRALLSR 157 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI E GR +V GRP LY TT FL FGL SLD+LPP+ Sbjct: 158 DLICEAGRLEVLGRPILYATTPTFLQQFGLTSLDELPPI 196 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 185 bits (471), Expect = 3e-46 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 1 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 61 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 121 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 161 >gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewanella oneidensis MR-1] Length = 198 Score = 184 bits (469), Expect = 6e-46 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLEVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 171 >gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 196 Score = 184 bits (468), Expect = 6e-46 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 12 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV IKTL Sbjct: 72 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 131 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 172 >gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Streptococcus mutans UA159] Length = 198 Score = 183 bits (467), Expect = 9e-46 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFVAGE LSL QLA LL+IP L L+E + Y+ Sbjct: 5 SKIEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 65 LVTKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 125 QAFDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELPD 165 >gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation and condensation protein ScpB [Thermobifida fusca YX] Length = 193 Score = 183 bits (467), Expect = 9e-46 Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V +P+S +LA G +L EVA G+R T+ Sbjct: 17 LEAVLMVVDQPVSAYELARAFGTDVETVTRVLRETAREYTEQGRGFDLREVAEGWRFYTR 76 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PE AE VE L+ +L++AALETLA++AYRQP++R ++ IRGVN DG ++TL+ RG Sbjct: 77 PECAEAVEHFLRDGHEVRLTQAALETLAVVAYRQPVSRGKVSAIRGVNCDGVMRTLVLRG 136 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LIEE G+ G LY TT FL+ GL+SLD+LP L Sbjct: 137 LIEEAGQDPESG-AILYRTTSYFLERLGLRSLDELPDL 173 >DUF387_Q5M621_6-167_PF04079.5 Length = 162 Score = 183 bits (467), Expect = 9e-46 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 1 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 61 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 121 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 159 >gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clostridium tetani E88] Length = 189 Score = 183 bits (467), Expect = 1e-45 Identities = 74/155 (47%), Positives = 109/155 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 18 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 77 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 78 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ Sbjct: 138 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIK 172 >DUF387_Q5QX76_8-169_PF04079.5 Length = 162 Score = 183 bits (466), Expect = 1e-45 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 2 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L + E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 62 QTRAELGQRLAGLWQ-EKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 121 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 162 >DUF387_Q73PC5_1-159_PF04079.5 Length = 159 Score = 183 bits (466), Expect = 1e-45 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >DUF387_Q7W9A9_10-171_PF04079.5 Length = 162 Score = 183 bits (466), Expect = 1e-45 Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E L A +P+ ++ +L GLELV++A G+R Sbjct: 2 VLETALLCASQPMQFAEMRKLFGDDQDIDNTALRAWLEALQAQWNERGLELVQLASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+IRGV S +K L Sbjct: 62 QSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 121 EDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 162 >gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Streptococcus thermophilus LMG 18311] Length = 193 Score = 183 bits (466), Expect = 1e-45 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 6 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 66 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 126 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 164 >gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 281 [Clostridium thermocellum ATCC 27405] Length = 213 Score = 183 bits (466), Expect = 1e-45 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 I E +LF +G+ +S+E+L+ + I G+ + E+ GY+L Sbjct: 23 GIFEGMLFASGDKVSIEKLSSITGIDKKTVKLVINNMIVKYNNDPSRGITIREINNGYQL 82 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +KPEY +Y+++L + ++ LS+AALETLAIIAY +PIT+A+IE+IRGVNSD AI LL Sbjct: 83 CSKPEYYDYIKQLFEPKQRSGLSQAALETLAIIAYNRPITKAKIEQIRGVNSDSAITKLL 142 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 E+ LI E GR D PG+P LY TTDEF FG KS DLP Sbjct: 143 EKNLIREAGRLDAPGKPVLYETTDEFFRSFGFKSDADLP 181 >DUF387_Q65HX2_10-169_PF04079.5 Length = 160 Score = 183 bits (465), Expect = 2e-45 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L+ Sbjct: 61 STKKEFAVYLKKLIEAPS-KGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLV 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 120 AKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 160 >gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 281 [Rhodoferax ferrireducens DSM 15236] Length = 230 Score = 183 bits (465), Expect = 2e-45 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E L +PL L + L + G+ELV VA G+R Q+ Sbjct: 9 ILETALICTSQPLPLRDMRVLFDDRLGLDTLKVLLRELQQDWAQRGVELVNVASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA-IKTLLE 120 +PE E+++RL E+PP+ +RA LETLAIIAYRQP+TR +IE++RGV + IK L + Sbjct: 69 RPEMREFLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDVRGVTVNSLLIKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RG IE +G R+ GRPAL+ TT FLD GL+SLD LP Sbjct: 128 RGWIEVIGHRETVGRPALFATTKHFLDDLGLESLDQLP 165 >gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pediococcus pentosaceus ATCC 25745] Length = 196 Score = 183 bits (465), Expect = 2e-45 Identities = 74/160 (46%), Positives = 97/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EALLFVAG E +S+E+L+ P L+L++ G Y+L Sbjct: 7 VEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE A +E+ LS AALE L+I+AYRQPITR EI++IRGV S ++ L+ Sbjct: 67 TKPELASILEKYFDRNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L++ VGR + PGRP YGTTDEFLDYFGL+ + DLP L Sbjct: 127 RNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDIKDLPKL 166 >gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Streptococcus pneumoniae TIGR4] Length = 189 Score = 182 bits (464), Expect = 2e-45 Identities = 82/160 (51%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFVAGE + + QLAELL +PP L L+E +G YR Sbjct: 5 AKIEALLFVAGEDGIRVRQLAELLSLPPTGIQQSLGKLAQKYEKDPDSSLALIETSGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP++AE ++ K LSRAALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFAEILKEYSKAPINQSLSRAALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIKEDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >DUF387_Q7ZAJ6_10-171_PF04079.5 Length = 162 Score = 182 bits (463), Expect = 3e-45 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 2 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 62 QTLEVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 121 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 162 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 182 bits (462), Expect = 3e-45 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFVAGE LSL QLA LL+IP L L+E + Y+ Sbjct: 1 SKIEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 61 LVTKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 121 QAFDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELPD 161 >DUF387_Q5ZVJ4_11-172_PF04079.5 Length = 162 Score = 182 bits (462), Expect = 4e-45 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 2 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV IKTL Sbjct: 62 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 121 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 162 >gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] Length = 258 Score = 182 bits (462), Expect = 4e-45 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 58 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 117 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 118 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 177 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 178 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 215 >gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus gasseri] Length = 196 Score = 182 bits (462), Expect = 4e-45 Identities = 72/160 (45%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L + L +LLEI P GL+L+ + Y+ Sbjct: 6 AQLEALLYAAGDDGLETDNLLQLLEISPSALRELANHLKDRLKNDENSGLQLICINHTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSAECGDVISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVNGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|42526386|ref|NP_971484.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 171 Score = 181 bits (461), Expect = 4e-45 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 281 [Prosthecochloris vibrioformis DSM 265] Length = 208 Score = 181 bits (461), Expect = 5e-45 Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 IE+++F + E ++L+ + ++ + G + +AGGYR+ Sbjct: 4 QIESVIFASEEAITLQVIRQVTGVEMDSAALQEVVEAINREYLESGRPFSIHRIAGGYRM 63 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 ++ E+A + +LL + +LSR+ LE L+++AY QP+TR EI++IRGV+ D AI L+ Sbjct: 64 LSREEFAPLLRKLLAPKIRRRLSRSILEVLSVVAYHQPVTRGEIQQIRGVSPDYAIDRLM 123 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG IE GR D PGRP YGTT EFLD F L SL DLP L Sbjct: 124 ERGFIEVQGRADTPGRPLQYGTTKEFLDLFHLSSLKDLPKL 164 >gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 181 bits (460), Expect = 5e-45 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 9 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 69 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 129 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 169 >gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 180 bits (459), Expect = 7e-45 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP ++E LA++LE P G EL +AGG+R T+ Sbjct: 24 LEAVLMVVDEPATVEHLAKILERPKRQIADALRELADEYTGQGRGFELRLIAGGWRFYTR 83 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P+YA VER + + +L++AALETLA++AYRQP++R+ + +RGVN DG ++TLL+RG Sbjct: 84 PKYATAVERFVLDGQQARLTQAALETLAVVAYRQPVSRSRVSAVRGVNCDGVMRTLLQRG 143 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 144 LVEEAGAEPETG-AILYRTTNYFLERMGLRGLDELPEL 180 >DUF387_Q7ZAN0_10-169_PF04079.5 Length = 160 Score = 180 bits (458), Expect = 9e-45 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 1 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 61 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 121 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 158 >gi|20807774|ref|NP_622945.1| predicted transcriptional regulator containing the HTH domain [Thermoanaerobacter tengcongensis MB4] Length = 168 Score = 180 bits (458), Expect = 1e-44 Identities = 73/160 (45%), Positives = 92/160 (57%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LF AG+ + + LAE LE+ G+++V + Sbjct: 5 GKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMC 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 65 TNDSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLE 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 125 YNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 164 >gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 281 [Chlorobium limicola DSM 245] Length = 221 Score = 180 bits (458), Expect = 1e-44 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 IEA++F + E ++L + ++ G + +AGGYR Sbjct: 29 QIEAVIFASEEAVTLSSIRQITGAEISLSQLDLLISALNDGYAASGLTFRIHRIAGGYRF 88 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+P + E ++R+ + KLS + LE L++IAY+QP+T+ EI+++RG D A+ LL Sbjct: 89 LTEPRFCELLKRIQAPKVRRKLSNSILEVLSVIAYKQPVTKGEIQQLRGTAPDYAVDRLL 148 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG I GR D PGRP YGTTD+FLD FGL SL DLP L Sbjct: 149 ERGFITVYGRADSPGRPLQYGTTDDFLDLFGLHSLRDLPKL 189 >gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xanthus] Length = 237 Score = 180 bits (457), Expect = 1e-44 Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 82 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 141 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L+ +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 142 DPHSGEYVRRYLR-VKPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 200 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 L++ +G+R+ GRP LYGT+ EFL++F LK L LP Sbjct: 201 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSALP 237 >gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 187 Score = 180 bits (457), Expect = 1e-44 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 10 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 70 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 130 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 167 >DUF387_Q5WH04_9-169_PF04079.5 Length = 161 Score = 180 bits (457), Expect = 1e-44 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 1 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 61 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 121 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 161 >DUF387_SCPB_5-164_PF04079.5 Length = 160 Score = 179 bits (456), Expect = 2e-44 Identities = 73/160 (45%), Positives = 92/160 (57%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LF AG+ + + LAE LE+ G+++V + Sbjct: 1 GKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMC 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 61 TNDSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 121 YNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 160 >gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesorhizobium loti MAFF303099] Length = 254 Score = 179 bits (456), Expect = 2e-44 Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 48 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 104 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R T + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 105 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 162 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT+ FLD+F L+ + DLP + Sbjct: 163 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGM 200 >gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [Kineococcus radiotolerans SRS30216] Length = 251 Score = 179 bits (455), Expect = 2e-44 Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L VA EP+ ++ LA P G EL EV GG+R+ Sbjct: 30 AALEAVLMVADEPVRVQALARATGEAPDEVDLLLRELAGEYAEQGRGFELREVGGGWRVY 89 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+A+ VE L + KL++AALETLAI+AYRQP++RA + +RGV+ DG ++TLL Sbjct: 90 SRAEHADVVEAFLLDGQTAKLTQAALETLAIVAYRQPVSRARVSAVRGVSVDGVMRTLLT 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ E G G LY TT+EFL GL L+DLPPL Sbjct: 150 RGLVCEAGVEATSG-ATLYRTTEEFLQRMGLDGLEDLPPL 188 >gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 281 [Polaromonas sp. JS666] Length = 244 Score = 179 bits (455), Expect = 2e-44 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L ++ L G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLREMGVLFNGVLTADSLKLVLEDLQNDWAGRGVELVHVATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLE 120 +P+ EY++RL E+PP+ +RA LETLAIIAYRQP+TR ++E+IRGV + I K L + Sbjct: 69 RPQMREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDMEDIRGVTINSMILKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G R+ GRPALY TT +FLD G++SLD LP + Sbjct: 128 RGWVEVIGHRETVGRPALYATTRQFLDDLGVESLDQLPAM 167 >gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 281 [Solibacter usitatus Ellin6076] Length = 308 Score = 178 bits (454), Expect = 3e-44 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+++VA EPL+L Q+A L+ PP G+ + EVAGGY++ Sbjct: 75 AVLEAIVYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMA 134 Query: 61 TKPEYAEYVERLLKTERPP-KLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE+ E V +K+ +PP KLS ALETLA+IAY+QP T EI EIRGV G KTLL Sbjct: 135 TKPEHHEAVRNFVKSLKPPLKLSLPALETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLL 194 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R LI GR++V G+P LY TT EFL FGLK L +LP L Sbjct: 195 DRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSL 235 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 178 bits (454), Expect = 3e-44 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 1 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 61 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 121 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 160 >gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactococcus lactis subsp. cremoris SK11] Length = 188 Score = 178 bits (454), Expect = 3e-44 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ATCELLLFVSGEAGLTLTELSSLTEMSKQACQQQIDYLKEKYHSDRESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK +++E ++ KT LS++ALE L+IIAY+QP+TR EI+++RGVNS G + TL Sbjct: 65 MATKEDFSEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRIEIDQLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TT+ FLDY G+ +L++LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTEFFLDYIGINNLEELPEI 166 >DUF387_SCPB_6-167_PF04079.5 Length = 162 Score = 178 bits (454), Expect = 3e-44 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 1 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 61 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 121 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 160 >gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactobacillus johnsonii NCC 533] Length = 196 Score = 178 bits (454), Expect = 3e-44 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 6 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Streptococcus agalactiae NEM316] Length = 194 Score = 178 bits (454), Expect = 3e-44 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 7 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 67 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 127 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 163 >gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 281 [Sphingopyxis alaskensis RB2256] Length = 197 Score = 178 bits (453), Expect = 3e-44 Identities = 71/159 (44%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + EPL QLA L G+ELVE G + QT Sbjct: 9 IEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTP 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + A + R + + P KLSRAA E LAI+AY +P++RAEIE IRGV S G + L+E Sbjct: 69 ADLAHLLRR--ERDDPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEA 126 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I GRR+VPGRP +Y TTD FL +FGL S DLP + Sbjct: 127 EWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRKDLPGI 165 >gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus mitis] Length = 189 Score = 178 bits (453), Expect = 4e-44 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 5 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lactococcus lactis subsp. lactis Il1403] Length = 188 Score = 178 bits (453), Expect = 4e-44 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 65 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 166 >DUF387_Q98LC4_45-200_PF04079.5 Length = 156 Score = 178 bits (453), Expect = 4e-44 Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 4 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 60 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R T + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 61 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT+ FLD+F L+ + DLP + Sbjct: 119 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGM 156 >gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 281 [Shewanella amazonensis SB2B] Length = 198 Score = 178 bits (453), Expect = 4e-44 Identities = 76/162 (46%), Positives = 98/162 (60%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L G+ LV+VAGGYR Sbjct: 12 LIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 QT+ Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV I KTL Sbjct: 72 QTQETLNPYLQTLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I VG ++VPGRPALY TT EFL YFGL +L LP L Sbjct: 131 SDRRWIRVVGHKEVPGRPALYATTSEFLAYFGLDNLASLPAL 172 >gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 281 [Frankia sp. CcI3] Length = 191 Score = 178 bits (453), Expect = 4e-44 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA +P+ + +LA L P G L GG+R Sbjct: 17 ALLEAVLMVAEKPVGVAELATGLGAPALEVERLLAQLAEQYVRDGRGFRLRHTGGGWRFY 76 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLA++AY+QP++R I +RGV++DG I+TL Sbjct: 77 TADECAPWVERFVLAGQSARLSQAALETLAVVAYQQPVSRGRISAVRGVSADGVIRTLTA 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGL+EEVG G LYGTTD FL+ GL+ LD+ Sbjct: 137 RGLVEEVGHDPETG-AILYGTTDYFLERMGLRGLDE 171 >gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Streptococcus suis 89/1591] Length = 189 Score = 178 bits (453), Expect = 4e-44 Identities = 78/161 (48%), Positives = 99/161 (61%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A IE LLFVAGE L+L LAE+LE+ P GL ++E + Y+ Sbjct: 5 AEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSEKYMADKASGLAILESSNRYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK EYA + KT +SRA LETL+I+AY+QPITR E+++IRGVNS GAI L Sbjct: 65 LVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQPITRIEVDDIRGVNSSGAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI E G+++V GRP LY TTD FLDY G+ SL++LP Sbjct: 125 QAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSLEELPD 165 >DUF387_Q8KF54_10-171_PF04079.5 Length = 162 Score = 177 bits (450), Expect = 8e-44 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 3 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 63 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 123 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 162 >DUF387_Q5LQJ0_23-178_PF04079.5 Length = 156 Score = 177 bits (450), Expect = 8e-44 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 2 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 59 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 117 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 156 >gi|56679084|gb|AAV95750.1| segregation and condensation protein B [Silicibacter pomeroyi DSS-3] Length = 218 Score = 176 bits (449), Expect = 1e-43 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 24 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 81 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 139 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 178 >gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 281 [Nocardioides sp. JS614] Length = 259 Score = 176 bits (449), Expect = 1e-43 Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EALL +A +P+ LA P G EL V GG+R T+ Sbjct: 45 LEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGGWRYYTR 104 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EYA VE + + +L++AALETLA++AY+QP++RA + IRGVN DG ++TLL RG Sbjct: 105 DEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRG 164 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT FL+ G+ SLDDLP L Sbjct: 165 LVEEAGHDHETG-ANLYRTTTYFLERIGVTSLDDLPEL 201 >gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 200 Score = 176 bits (449), Expect = 1e-43 Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A ++ALL+VAG+ + EQL +LL++ P GL+L+E+ Y+ Sbjct: 6 AQLQALLYVAGDGGIKKEQLRDLLQLADPEIESLAKRLQEKLASDPDCGLQLLEINDEYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E ++ VE + +S++ALE LAI+AYRQPITR EI+EIRGVNS GA++TL Sbjct: 66 LTTSWEVSDLVEAYFNKDLTKNISQSALEILAIVAYRQPITRIEIDEIRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGL++ G +D PG P LY TTD FL YFG KSL DLP Sbjct: 126 VWRGLVKAQGVKDAPGHPKLYVTTDYFLQYFGYKSLADLP 165 >gi|56478941|ref|YP_160530.1| putative transcriptional regulator,helix-turn-helix type [Azoarcus sp. EbN1] Length = 197 Score = 176 bits (448), Expect = 1e-43 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A PL++ L +L + P G ELV+VA G+R QT Sbjct: 12 VVEAALLAASAPLAVADLRQLFDPDPGADFIRRVLEDLRADWSDRGAELVQVASGWRFQT 71 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+IRGV +KTL Sbjct: 72 RPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDIRGVAVSPNVLKTLES 130 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 131 RGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 170 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 176 bits (448), Expect = 1e-43 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 1 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 61 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 121 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 162 >gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Cytophaga hutchinsonii] Length = 237 Score = 176 bits (448), Expect = 2e-43 Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 6/162 (3%) Query: 3 IEALLFVAGEPLSLEQLAELL------EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 IE+++F A +P+ +++ + + EIP +++++ GG Sbjct: 8 IESIIFCATDPVKPDEIRQCMSEMFEAEIPLDDILNAVDDLLSKYEDETFPFQILQIGGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 Y+ TKP Y + LK + +LS +ALET+AI+AY+QPIT+A+IE+IRGVN D A++ Sbjct: 68 YQFMTKPAYQSSLGIFLKQKSKKRLSTSALETMAIVAYKQPITKAQIEQIRGVNCDYAMQ 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LLE+ L+E G+ D GRP LYGT+ +FL+YFG+ ++ DLP Sbjct: 128 KLLEKELVEIQGKSDGVGRPILYGTSQKFLEYFGINNIKDLP 169 >gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodobacter sphaeroides 2.4.1] Length = 211 Score = 176 bits (448), Expect = 2e-43 Identities = 63/160 (39%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+++ +L L P G++L V + +T Sbjct: 21 MVEAILFASADPVTVAELQARL---PHGCDPAEALTHLRRRYEGRGVQLARVGDAWAFRT 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + +T KLSRAA+ETLAI+AY QP+TRAEIEEIRGV S G I LLE Sbjct: 78 AADLGFLMRK--ETVEQKKLSRAAIETLAIVAYHQPVTRAEIEEIRGVAVSRGTIDQLLE 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T+ FLD+FGL+S DLP + Sbjct: 136 LEWIRFGRRRMTPGRPVTFVVTESFLDHFGLESARDLPGI 175 >gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR00281 [Listeria monocytogenes str. 4b F2365] Length = 198 Score = 176 bits (447), Expect = 2e-43 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 8 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 68 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 128 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 169 >gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Parachlamydia sp. UWE25] Length = 234 Score = 176 bits (447), Expect = 2e-43 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 70 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 129 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 130 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 189 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L + Sbjct: 190 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKI 232 >gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chlorobium tepidum TLS] Length = 209 Score = 176 bits (447), Expect = 2e-43 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 12 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 72 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 132 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 171 >gi|28378542|ref|NP_785434.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] Length = 199 Score = 175 bits (446), Expect = 2e-43 Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 6 QIEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRL 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 66 ATKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLV 125 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 126 LRQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 166 >gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 281 [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 175 bits (446), Expect = 3e-43 Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E + + ++LE + + +A GYR Sbjct: 12 IEAVIFASEEAVPASFICQVLESGVSAAEVDDAVNALNAFYTQSGRAFRIESIAEGYRFM 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T P A + ++L + KLS++ LE LA+IAY+QP++R++I+ IRGV+ D A+ LLE Sbjct: 72 TIPALAPLLRKMLAPKIRRKLSQSVLEVLAVIAYQQPVSRSDIQHIRGVSPDYAVNKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR G+P LYGTT EFLD+F L SL DLP L Sbjct: 132 RGLIDVRGRAASVGKPLLYGTTKEFLDFFHLSSLKDLPKL 171 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 175 bits (446), Expect = 3e-43 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 3 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 63 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 123 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 159 >gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 281 [Pelobacter propionicus DSM 2379] Length = 206 Score = 175 bits (445), Expect = 3e-43 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A++E+++F A PLSL++L ELL E G +LV +AGG++ Sbjct: 5 AVVESVIFSADTPLSLDKLCELLPEYERGAIRDVLRDLVSLHEVRNGGFQLVNIAGGWQF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T +YV R +K + K S+++LETLAI+AYRQP+TRAEIE +RGV+ G ++TLL Sbjct: 65 RTPSSLQQYVVRNVKAKS-AKFSQSSLETLAIVAYRQPVTRAEIEYLRGVDCGGVLRTLL 123 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER LI +G++D+PGRP +YGT+ EFL+ FGLK L LP L Sbjct: 124 ERKLIRILGKKDIPGRPLIYGTSREFLEVFGLKDLKSLPTL 164 >gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [Enterococcus faecium DO] Length = 189 Score = 175 bits (445), Expect = 3e-43 Identities = 76/159 (47%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRLQ 60 +EALLF+ GE +S E+L+ LL + L + E Y L Sbjct: 7 LEALLFIVGEEGISNEELSGLLNLSEAEVTSLVKELKESYTQNSHSALHIFETESHYVLT 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E A ++R + LS+AA+ETLAIIAY+QPITRAEIE+IRGV GA++ L Sbjct: 67 TKKELAPLLKRYAQGTSNT-LSQAAVETLAIIAYKQPITRAEIEQIRGVQVSGAVQRLAA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LIEE GR + PGRP LYGTT FLDYFGLKSL++LP Sbjct: 126 HKLIEEKGRVEGPGRPILYGTTGYFLDYFGLKSLEELPD 164 >gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 226 Score = 175 bits (445), Expect = 3e-43 Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+++ L + P G+ +V+V + ++T Sbjct: 32 MVEAVLFASAEPVTVRDLIARM---PHGCRPSEALEHLRKRYEGRGVRVVQVGEAWAMRT 88 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 89 APDLGYLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I R+ PGRP + T FLD+FGL+S DLP L Sbjct: 147 MEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESARDLPGL 186 >DUF387_Q84FE4_81-236_PF04079.5 Length = 156 Score = 175 bits (444), Expect = 4e-43 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 2 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L+ +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 62 DPHSGEYVRRYLR-VKPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L++ +G+R+ GRP LYGT+ EFL++F LK L L Sbjct: 121 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSAL 156 >DUF387_Q5NZ85_11-170_PF04079.5 Length = 160 Score = 174 bits (443), Expect = 5e-43 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A PL++ L +L + P G ELV+VA G+R QT Sbjct: 2 VVEAALLAASAPLAVADLRQLFDPDPGADFIRRVLEDLRADWSDRGAELVQVASGWRFQT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+IRGV +KTL Sbjct: 62 RPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDIRGVAVSPNVLKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 121 RGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 160 >gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] Length = 197 Score = 174 bits (443), Expect = 5e-43 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE +LFV G E ++LE+L +LLE+ GL + EVA +RL Sbjct: 8 AAIEGILFVRGDEGVTLEELCDLLELSTDVVYAALEELRLSYTDEARGLRIEEVAHAFRL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+RGV S+ AI+TL Sbjct: 68 STKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEVRGVKSEKAIQTLT 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 128 SRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 168 >gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 223 Score = 174 bits (442), Expect = 7e-43 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 30 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 89 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 90 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 149 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 150 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 186 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 174 bits (442), Expect = 8e-43 Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 2 QIEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 62 ATKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLV 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 122 LRQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 162 >DUF387_Q5TXY6_13-173_PF04079.5 Length = 161 Score = 173 bits (441), Expect = 9e-43 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 2 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 62 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 121 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 161 >gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 281 [Jannaschia sp. CCS1] Length = 228 Score = 173 bits (441), Expect = 1e-42 Identities = 65/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + +P+SL ++ + P G+++ +V + +T Sbjct: 24 MVEALLFASADPVSLAEMEARM---PHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + R KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I L+E Sbjct: 81 AADLGFLMAR--DQVEQRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+ RR PGRP Y T FLD+FGL+S DLP L Sbjct: 139 LDWIKFGRRRMTPGRPVTYVVTQLFLDHFGLESARDLPGL 178 >gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides DSM 266] Length = 202 Score = 173 bits (440), Expect = 1e-42 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 +EAL+F + E ++L + ++ G + ++AGGYR Sbjct: 12 QVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 ++ E+ +++L+ + ++S++ LE LA+IAY+QP+T+AEI ++RGV+ D ++ LL Sbjct: 72 FSESEFDALLKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLL 131 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG IE GR D PG+P YGTT EFLD F L SL DLP L Sbjct: 132 ERGFIEVRGRADSPGKPLQYGTTKEFLDLFSLFSLRDLPKL 172 >DUF387_SCPB_8-169_PF04079.5 Length = 162 Score = 173 bits (440), Expect = 1e-42 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 1 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 61 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 121 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 162 >DUF387_Q9S231_28-186_PF04079.5 Length = 159 Score = 173 bits (440), Expect = 1e-42 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 3 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 63 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 123 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 159 >DUF387_O05669_30-188_PF04079.5 Length = 159 Score = 173 bits (439), Expect = 2e-42 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 2 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 159 >gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Novosphingobium aromaticivorans DSM 12444] Length = 215 Score = 173 bits (439), Expect = 2e-42 Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 7/159 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA LF A +PL+ ++++ L G+ LVE G + QT Sbjct: 11 VEATLFAAEQPLTEQEISAHLG----GVDLKRTLQHLSDLYADRGVHLVERGGRWHFQTA 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 P+ A + R + E P +LSRAA E LAIIAY +P++RAEIE IRGV + G + LLE Sbjct: 67 PDLAHLLRR--EKEEPRRLSRAATEALAIIAYHEPVSRAEIEAIRGVQTAKGTLDVLLEA 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I GRR+VPGRP +Y TT +FL +FGL+S DLP + Sbjct: 125 GWIRIAGRREVPGRPTIYATTPDFLSHFGLESRRDLPGI 163 >gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae str. PEST] Length = 188 Score = 173 bits (439), Expect = 2e-42 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 14 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 73 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 74 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 132 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 133 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 173 >gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodospirillum rubrum] Length = 239 Score = 172 bits (438), Expect = 2e-42 Identities = 76/159 (47%), Positives = 93/159 (58%), Gaps = 6/159 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLF A PLS+ LA L P G+ LVE G + +T Sbjct: 23 LIEALLFAAPTPLSVADLASRL---PAGADVAALLGALADHYRQRGVVLVESGGRWAFRT 79 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + L+T P +LSRAA+ETLAIIAY QP+TRA+IEEIRGV S G + LLE Sbjct: 80 AADLAGQLR--LETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLE 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I GRR GRP +GTT+ FLD+FGL S+DDLP Sbjct: 138 AGWIHPCGRRQTAGRPLTWGTTEGFLDHFGLGSVDDLPG 176 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 172 bits (438), Expect = 2e-42 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE +LFV G E ++LE+L +LLE+ GL + EVA +RL Sbjct: 1 AAIEGILFVRGDEGVTLEELCDLLELSTDVVYAALEELRLSYTDEARGLRIEEVAHAFRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+RGV S+ AI+TL Sbjct: 61 STKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEVRGVKSEKAIQTLT 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 121 SRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 161 >gi|61102014|ref|ZP_00377468.1| segregation and condensation protein B [Erythrobacter litoralis HTCC2594] Length = 230 Score = 172 bits (438), Expect = 2e-42 Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA LF + +P+ +E LA L G+ LVE + + QT Sbjct: 12 IEATLFASEDPMGVESLATHLG-DAAASDVRDALKNLAKHYEERGVHLVERSRRWHFQTA 70 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 P+ A + R + E+ +LSRAA E LAI+AY +P++RAEIE IRGV + G + L+E Sbjct: 71 PDLAHLLRR--EKEQVRRLSRAATEVLAIVAYHEPVSRAEIEAIRGVQTAKGTLDVLMEA 128 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR+VPGRP +Y TT EFL +FGL S DLP L Sbjct: 129 GWVRAAGRREVPGRPVIYATTPEFLQHFGLASRKDLPGL 167 >gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycobacterium tuberculosis H37Rv] Length = 231 Score = 172 bits (438), Expect = 2e-42 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 31 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 90 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 91 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 150 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G + TT+ FL+ GL SL +LP + Sbjct: 151 GLITEVGTDADTG-AVTFATTELFLERLGLTSLSELPDI 188 >DUF387_Q74C44_6-165_PF04079.5 Length = 160 Score = 172 bits (438), Expect = 2e-42 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 1 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 61 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 120 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 160 >gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [Thermus thermophilus HB27] Length = 177 Score = 172 bits (437), Expect = 3e-42 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 5 ALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPE 64 A+LF AG P++L++L L P G+ L VAGG+RL P+ Sbjct: 13 AVLFAAGRPVALKEL-RALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPK 71 Query: 65 YAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLI 124 E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLERGL+ Sbjct: 72 ALEAVERVLKP-SPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLV 130 Query: 125 EEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 131 RVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 166 >gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lactobacillus acidophilus NCFM] Length = 197 Score = 172 bits (437), Expect = 3e-42 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 22/170 (12%) Query: 1 AIIEALLFVAGE------------PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGL 48 A +EALL+ AG+ ++ E+L+E+ + G+ Sbjct: 6 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADE----------LEKKLSTDTNSGI 55 Query: 49 ELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG 108 +++ +A Y+L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRG Sbjct: 56 QIIHIAHTYKLTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRG 115 Query: 109 VNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 VNS GA++TL+ RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 116 VNSSGALQTLIWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 165 >gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Acinetobacter sp. ADP1] Length = 196 Score = 172 bits (437), Expect = 3e-42 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + P+SL +L E + +EL+E A G+R Q Sbjct: 21 QIEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQV 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV N+ ++ L E Sbjct: 81 RSKYRNMIAQVW-PERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFE 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 140 WNWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 179 >DUF387_Q5SK60_9-166_PF04079.5 Length = 158 Score = 172 bits (437), Expect = 3e-42 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 5 ALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPE 64 A+LF AG P++L++L L P G+ L VAGG+RL P+ Sbjct: 5 AVLFAAGRPVALKEL-RALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPK 63 Query: 65 YAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLI 124 E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLERGL+ Sbjct: 64 ALEAVERVLKP-SPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLV 122 Query: 125 EEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 123 RVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 158 >DUF387_Q5FKG0_6-167_PF04079.5 Length = 162 Score = 171 bits (436), Expect = 4e-42 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 22/170 (12%) Query: 1 AIIEALLFVAGE------------PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGL 48 A +EALL+ AG+ ++ E+L+E+ + G+ Sbjct: 1 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADE----------LEKKLSTDTNSGI 50 Query: 49 ELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG 108 +++ +A Y+L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRG Sbjct: 51 QIIHIAHTYKLTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRG 110 Query: 109 VNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 VNS GA++TL+ RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 111 VNSSGALQTLIWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 160 >gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Oenococcus oeni PSU-1] Length = 196 Score = 171 bits (435), Expect = 5e-42 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A + +L+FV+G+ + L+ ++++ ++LVE YR Sbjct: 8 AQLFSLVFVSGDDGIDLQSISKITGFDRSAVQIDLESLSNRLEEDQQNPIKLVENDQVYR 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK ++A +++ +T LS+A+LETL IIAY+QP+TR E+++IRGVNS GAI L Sbjct: 68 LVTKSKFAPLLKKYYQTPVANSLSKASLETLTIIAYKQPVTRIEVDKIRGVNSSGAISRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LI+E GR+ GRP LY TT+ FLDYFGLK +DDLP L Sbjct: 128 VSRELIQESGRKAEVGRPLLYTTTNFFLDYFGLKKIDDLPEL 169 >gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00281 [Geobacter sulfurreducens PCA] Length = 195 Score = 171 bits (434), Expect = 6e-42 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 6 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 66 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 165 >DUF387_Q6FDU6_20-179_PF04079.5 Length = 160 Score = 170 bits (433), Expect = 7e-42 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + P+SL +L E + +EL+E A G+R Q Sbjct: 2 QIEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV N+ ++ L E Sbjct: 62 RSKYRNMIAQVW-PERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 121 WNWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 160 >DUF387_Q6N5X0_36-191_PF04079.5 Length = 156 Score = 170 bits (433), Expect = 7e-42 Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV +A + +T Sbjct: 2 LLEALLFASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE Sbjct: 59 ASDLAWLMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G ++ GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 117 TGWVKPRGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 156 >gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 281 [Syntrophomonas wolfei str. Goettingen] Length = 171 Score = 170 bits (433), Expect = 8e-42 Identities = 75/161 (46%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRL 59 A +EA+LFV + +++L E+L+IP G L++VE+ GGY L Sbjct: 9 AAVEAVLFVRAGRVGMDELVEILDIPLLELKEILQEMILEYNNNIRGGLQIVELDGGYLL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+P Y++ + R ++ + +LS AAL+TLAI+AYRQPITR EIE+IRGV SD + TLL Sbjct: 69 CTRPAYSDILAR-MEKPQKKRLSAAALDTLAIVAYRQPITRLEIEQIRGVKSDRIVNTLL 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+GLI+E G + V G+P LY TT+EFL FGL +L +LP L Sbjct: 128 EKGLIQEAGHKAVLGKPILYATTEEFLKVFGLTNLKELPDL 168 >gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 235 Score = 170 bits (433), Expect = 9e-42 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 34 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 93 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 94 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 153 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 154 RGLITEAGVDEDTG-ATTFATTDLFLERLGLTSLADLPDI 192 >DUF387_Q89KZ6_34-189_PF04079.5 Length = 156 Score = 170 bits (432), Expect = 1e-41 Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV VA + +T Sbjct: 2 LLEALLFASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + A + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE Sbjct: 59 AGDLAWLMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 117 TGWIKPRGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 156 >gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 281 [Frankia sp. EAN1pec] Length = 214 Score = 170 bits (432), Expect = 1e-41 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA P+ + + A L+IP G L V G+RL Sbjct: 64 ALVEAVLTVAENPVGVAEFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLY 123 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLAI+AY+QP++R I +RGV++DG I+TL Sbjct: 124 TADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPVSRGRISAVRGVSADGVIRTLTA 183 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 R L+EE G G LY TTD FL+ GL+ Sbjct: 184 RNLVEECGHDHESG-AILYRTTDYFLERMGLR 214 >gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 187 Score = 170 bits (431), Expect = 1e-41 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V P+ LA + + G +L E GG+RL Sbjct: 15 SRIESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLY 74 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 75 TRPDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQM 134 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ EV G Y TT FL+ G+ SLD LP L Sbjct: 135 RGLVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 173 >DUF387_O33209_30-188_PF04079.5 Length = 159 Score = 169 bits (430), Expect = 2e-41 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 2 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G + TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGTDADTG-AVTFATTELFLERLGLTSLSELPDI 159 >DUF387_Q6MER5_69-232_PF04079.5 Length = 164 Score = 169 bits (430), Expect = 2e-41 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 2 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 61 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 62 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 121 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L + Sbjct: 122 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKI 164 >DUF387_Q7ZAN2_15-173_PF04079.5 Length = 159 Score = 169 bits (429), Expect = 2e-41 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V P+ LA + + G +L E GG+RL Sbjct: 1 SRIESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 61 TRPDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQM 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ EV G Y TT FL+ G+ SLD LP L Sbjct: 121 RGLVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 159 >gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 281 [Paracoccus denitrificans PD1222] Length = 221 Score = 168 bits (428), Expect = 3e-41 Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+S ++A L P G++L V + +T Sbjct: 25 MVEAILFASAEPMSQREIAARL---PAGCDVGEAVQALRARYEGRGVQLARVGDAWAFRT 81 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + ++ + +LSRAA ETLAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 82 AADLGFLMQESV--VESRRLSRAATETLAIIAYHQPVTRAEIEEIRGVAVSRGTLDQLIE 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + RR PGRP + T+ FLD+FGL+S DLP L Sbjct: 140 LDWVRIGRRRQTPGRPVTFVVTEAFLDHFGLESARDLPGL 179 >gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifidobacterium longum NCC2705] Length = 238 Score = 168 bits (428), Expect = 3e-41 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX------GLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 52 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 111 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 112 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 171 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G D R AL T++ FLD GLKSLD+LP L Sbjct: 172 IRSLTVRGLIKEDG-VDPESRAALLVTSEFFLDQMGLKSLDELPSL 216 >DUF387_SCPB_106-268_PF04079.5 Length = 163 Score = 168 bits (426), Expect = 5e-41 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 1 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 61 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 121 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 163 >gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Mycoplasma gallisepticum R] Length = 291 Score = 168 bits (426), Expect = 5e-41 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 106 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 165 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 166 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 225 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 226 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 268 >gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides BS1] Length = 201 Score = 168 bits (426), Expect = 5e-41 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E +S + + ++L E+ + +AGG+R Sbjct: 12 IEAVIFASDEAVSAQIILQVLAEELSAEDIDAGVESLNASYASTGRSFRIARIAGGFRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T ++++L + KLS++ LE LA+IAY+QP TR EI+++RGV+ D AI LLE Sbjct: 72 TLGMLEPTLKKMLAPKIQRKLSQSVLEVLAVIAYQQPATRGEIQQVRGVSPDYAINKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR + PG+P +YGTT EFLD+F + SL DLP L Sbjct: 132 RGLIDVRGRAEKPGKPLIYGTTKEFLDFFNITSLKDLPKL 171 >DUF387_Q740D9_34-192_PF04079.5 Length = 159 Score = 168 bits (426), Expect = 6e-41 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 1 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 61 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 121 RGLITEAGVDEDTG-ATTFATTDLFLERLGLTSLADLPDI 159 >gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 208 Score = 167 bits (424), Expect = 9e-41 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 24 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 83 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 84 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 143 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 144 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPK 185 >DUF387_Q5YY85_27-185_PF04079.5 Length = 159 Score = 166 bits (423), Expect = 1e-40 Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA+L V P +EQLA L+ G++L V G+R Sbjct: 1 SALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL Sbjct: 61 TRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G LY TT+ FL+ GL SL DLPPL Sbjct: 121 RGLIAEAGVDPET-NGTLYRTTELFLERIGLASLSDLPPL 159 >gi|73662567|ref|YP_301348.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 182 Score = 166 bits (421), Expect = 2e-40 Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EALL+ AG E L +QL E+LEI P GL + Y L Sbjct: 7 GILEALLYTAGDEGLDQQQLLEILEIEPTTLTELIEAYDSP------GLTIQHYGNTYVL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E ++Y+E+L++ + KLS+AA+E+L+IIAY QP++R++IE IRG+NSDGA+KTL+ Sbjct: 61 TTKKEASDYIEQLIEQKSKMKLSQAAMESLSIIAYNQPLSRSDIELIRGINSDGAVKTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E + + R TT+ FL+ FG++ LDDLP Sbjct: 121 ARGLVEA--KEEADSRSHQLYTTELFLNVFGIEHLDDLP 157 >gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesorhizobium loti MAFF303099] Length = 229 Score = 165 bits (419), Expect = 3e-40 Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A +P++ E LA ++ +LV VAGG++ T Sbjct: 43 RVEATIFAASQPVTRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 99 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 100 RPAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLR 159 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 160 GAGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 199 >DUF387_Q8G4K8_52-216_PF04079.5 Length = 165 Score = 165 bits (418), Expect = 5e-40 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX------GLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 1 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 60 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 61 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 120 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G D R AL T++ FLD GLKSLD+LP L Sbjct: 121 IRSLTVRGLIKEDG-VDPESRAALLVTSEFFLDQMGLKSLDELPSL 165 >DUF387_SCPB_24-186_PF04079.5 Length = 163 Score = 164 bits (417), Expect = 6e-40 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 1 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 61 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 121 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPK 162 >DUF387_Q981I4_42-200_PF04079.5 Length = 159 Score = 164 bits (416), Expect = 7e-40 Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A +P++ E LA ++ +LV VAGG++ T Sbjct: 2 RVEATIFAASQPVTRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 58 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 59 RPAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLR 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 119 GAGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 158 >gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psychrobacter arcticum 273-4] Length = 183 Score = 164 bits (416), Expect = 8e-40 Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 4/160 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IE LL + PL+ L + L + L L A GYRLQ Sbjct: 20 QIEVLLHASEVPLTANHLKKHLSLTTKTLEQALALLKQRLDLGV--LNLHHTASGYRLQI 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +RGV S ++ L + Sbjct: 78 ADSHSALIQSVF-PQRQERLSQALLETLSVIAYKQPVTRSDIEHVRGVTLSSTILRQLFD 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 137 KGWIEENGHKDTLGRPALLHTTPKFLDAFGLSHLDELPPM 176 >gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdellovibrio bacteriovorus HD100] Length = 488 Score = 164 bits (416), Expect = 9e-40 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE---IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L + I G+ L EV GGY Sbjct: 104 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 163 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 164 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 222 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 223 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 265 >DUF387_SCPB_15-176_PF04079.5 Length = 162 Score = 163 bits (415), Expect = 9e-40 Identities = 67/161 (41%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V Y++ Sbjct: 2 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 62 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 122 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 162 >gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Mycoplasma pulmonis UAB CTIP] Length = 207 Score = 163 bits (415), Expect = 9e-40 Identities = 67/161 (41%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V Y++ Sbjct: 16 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 75 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 76 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 135 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 136 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 176 >gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregation and condensation protein ScpB [Exiguobacterium sp. 255-15] Length = 190 Score = 163 bits (415), Expect = 9e-40 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IIE+LLFV G+ + L+++LEI L++VE G +++ Sbjct: 6 IIESLLFVVGDDGIDPRGLSQVLEISEAAAREQLHALQTTFEAEERVLQIVESGGVFKMV 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ E + YV+ + LSRAA+ETL IIAY+QP+TRA+IE IRGV ++ I TL Sbjct: 66 TRKEMSPYVQAYAGSLAEDSLSRAAMETLVIIAYKQPVTRADIEVIRGVKTERVIHTLSA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 +GLI+E GR GR LY TTD FLD+FGL S+ Sbjct: 126 KGLIDEAGRAKGVGRAKLYKTTDHFLDHFGLNSI 159 >DUF387_Q8YGS3_23-178_PF04079.5 Length = 156 Score = 163 bits (415), Expect = 1e-39 Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 2 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ A + R +T + KLSRA +E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 59 APDLAFIMNR--ETVQQRKLSRATMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 117 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 156 >DUF387_Q98A15_35-195_PF04079.5 Length = 161 Score = 163 bits (415), Expect = 1e-39 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVPREMLARVVGKN---CNLDLVIDDIRTELAGRPYELVSVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + + +LS++ L IAY QPITR E+ G S I Sbjct: 58 TKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 117 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 118 VLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPD 160 >gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesorhizobium loti MAFF303099] Length = 240 Score = 163 bits (415), Expect = 1e-39 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVPREMLARVVGKN---CNLDLVIDDIRTELAGRPYELVSVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + + +LS++ L IAY QPITR E+ G S I Sbjct: 92 TKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 151 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 152 VLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPD 194 >DUF387_Q98P19_35-194_PF04079.5 Length = 160 Score = 163 bits (414), Expect = 1e-39 Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVPREVLARVVSKS---CNLDLVIDDIRAELAGRPYELVSVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 TK + + + T + +LS++ L IAY QPITR E+ G S I Sbjct: 58 TKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGV 117 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL++L LP Sbjct: 118 LRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPD 159 >gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Brevibacterium linens BL2] Length = 210 Score = 163 bits (413), Expect = 2e-39 Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX----GLELVEVAGG 56 A IEA+L ++ +S+ +LA L + G E+ VAGG Sbjct: 8 AGIEAVLMISDSAVSVTELATALGLDEDTVTDAIAELKADYDGGEDRRQRGFEIRLVAGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 +R+ ++ +Y E V+ L + + KLS+AALETLA+IAYRQPI+R I IRGV+ DG I+ Sbjct: 68 FRIFSRGDYHEIVKDFLTSGQSAKLSQAALETLAVIAYRQPISRPRIAAIRGVSVDGVIR 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TLL RGLI E G ++ LY TT +FLD G+ S+DDLP + Sbjct: 128 TLLLRGLIVEAG-KEATTSALLYTTTHQFLDALGMNSIDDLPEI 170 >gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesorhizobium loti MAFF303099] Length = 225 Score = 163 bits (413), Expect = 2e-39 Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVPREVLARVVSKS---CNLDLVIDDIRAELAGRPYELVSVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 TK + + + T + +LS++ L IAY QPITR E+ G S I Sbjct: 92 TKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGV 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL++L LP Sbjct: 152 LRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPD 193 >DUF387_SCPB_4-165_PF04079.5 Length = 162 Score = 163 bits (413), Expect = 2e-39 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 2 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 62 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 122 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 162 >gi|47459311|ref|YP_016173.1| predicted transcriptional regulator [Mycoplasma mobile 163K] Length = 192 Score = 163 bits (413), Expect = 2e-39 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 5 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 65 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 125 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 165 >gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodopseudomonas palustris CGA009] Length = 432 Score = 162 bits (412), Expect = 2e-39 Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 43 FASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRTASDLAW 99 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEE 126 + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE G ++ Sbjct: 100 LMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLETGWVKP 157 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 158 RGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 191 >gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisseria meningitidis Z2491] Length = 200 Score = 162 bits (411), Expect = 3e-39 Identities = 68/163 (41%), Positives = 88/163 (53%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 9 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 68 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKT 117 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV I+T Sbjct: 69 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNVIQT 125 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L +RG IE +G RD G+PAL+ TT FL L L++LPPL Sbjct: 126 LQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLDGLEELPPL 168 >gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 281 [Geobacter metallireducens GS-15] Length = 195 Score = 162 bits (411), Expect = 3e-39 Identities = 79/161 (49%), Positives = 107/161 (66%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +I+E+LLFVA P++ ++L L E G+ LVEVA GY+ Sbjct: 6 SIVESLLFVADAPMTFDRLCSFLDEFDRGDIREALGALQEEYGQEGRGVVLVEVASGYQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T E A+Y+ RL KT RP K S++ALETLAIIAYRQP+TRAEIE +RGV+ G +KT+L Sbjct: 66 RTPVENADYLRRLTKT-RPVKFSQSALETLAIIAYRQPVTRAEIEYLRGVDCGGVLKTIL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G++D+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKKDIPGKPLIYGTTREFLELFSLKDLRSLPTL 165 >gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 248 Score = 161 bits (410), Expect = 3e-39 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 35 FASSEPLDQAALAKRM---PDGVDIKVALAQLQADYASRGVNLVRVANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAE+EEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETKRLSRAAIEMLAIIAYHQPVTRAELEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFTLESLGDLPGL 183 >gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 281 [Psychrobacter cryohalolentis K5] Length = 186 Score = 161 bits (409), Expect = 4e-39 Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 4/160 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IE LL + PL+ L + L + L L A GYRLQ Sbjct: 20 QIEVLLHASEAPLTTNHLKKHLFLTTNKLEQALELLKQRLNLGV--LSLHHTASGYRLQI 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +RGV S ++ L + Sbjct: 78 ADSHSALIQNVF-PQRQERLSQALLETLSVIAYKQPVTRSDIEHVRGVTLSSNILRQLFD 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 137 KGWIEENGYKDTLGRPALLHTTSQFLDAFGLSHLDELPPM 176 >gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 161 bits (409), Expect = 5e-39 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 41 FASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRTAGDLAW 97 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 98 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 155 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 156 RGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 189 >gi|68263552|emb|CAI37040.1| segregation and condensation protein B [Corynebacterium jeikeium K411] Length = 198 Score = 161 bits (408), Expect = 6e-39 Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAG 55 + +E+LL V+ E ++ +LA +L +P G EL E G Sbjct: 19 SRVESLLLVSDEAVTPTELARVLSNEEKAVPEAEVARTLHEIAAEYEARGNGFELREHEG 78 Query: 56 GYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 +RL T+ ++ VE L +LSRAALETLA++AYRQP+TR+++ +RGVN DG + Sbjct: 79 AFRLYTRRANSDVVEAKLLDGTQQRLSRAALETLAVVAYRQPVTRSQVAAVRGVNCDGVM 138 Query: 116 KTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +TL RGLI E G G LY TT+ FL+ G++SL++LP L Sbjct: 139 RTLSLRGLIAETG---EQGGAHLYSTTELFLEQIGIESLEELPDL 180 >gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti] Length = 231 Score = 161 bits (408), Expect = 6e-39 Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP++ LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + T E +LS+A L IAY QPITR E+ G S I Sbjct: 92 TKKIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 151 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 152 VLRGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLPE 194 >gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Nocardia farcinica IFM 10152] Length = 225 Score = 161 bits (408), Expect = 6e-39 Identities = 67/156 (42%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA+L V P +EQLA L+ G++L V G+R Sbjct: 27 SALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFY 86 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL Sbjct: 87 TRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLA 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGLI E G LY TT+ FL+ GL SL D Sbjct: 147 RGLIAEAGVDPET-NGTLYRTTELFLERIGLASLSD 181 >DUF387_Q6MLN0_104-265_PF04079.5 Length = 162 Score = 160 bits (407), Expect = 8e-39 Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE---IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L + I G+ L EV GGY Sbjct: 1 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 61 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 120 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 162 >DUF387_Q9F5B4_43-202_PF04079.5 Length = 160 Score = 160 bits (407), Expect = 9e-39 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 2 RIEAVIFASAEPVSRETLARVVGKD---CSIDLLIDDLVEELRDRPYELVSVAGGWQHRT 58 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +AE + R LS L + Y QPITR E+ +I G S + L Sbjct: 59 RPRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL FG+++L DLP + Sbjct: 119 RGAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLPNI 160 >gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR00281 [Brucella abortus biovar 1 str. 9-941] Length = 241 Score = 160 bits (407), Expect = 9e-39 Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 35 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 91 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ A + R +T + KLSRAA+E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 92 APDLAFIMNR--ETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 150 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 189 >DUF387_O52287_40-199_PF04079.5 Length = 160 Score = 160 bits (406), Expect = 1e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 2 RVEAVIFASAEPVSRETLARVVGKE---CSIDLLIDDLREDLQGRPYELVSVAGGWQHRT 58 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +A+ ++ R LS L + Y QPITR E+ +I G S + L Sbjct: 59 RPRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL F +++L DLP + Sbjct: 119 RGAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNI 160 >gi|75675995|ref|YP_318416.1| chromosome segregation and condensation protein ScpB [Nitrobacter winogradskyi Nb-255] Length = 248 Score = 160 bits (406), Expect = 1e-38 Identities = 65/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 35 FASSEPLDQSALAKRM---PDGVDIKSALAQLQADYASRGVNLVRIANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L++L DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFSLENLGDLPGL 183 >gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] Length = 233 Score = 160 bits (406), Expect = 1e-38 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 44 RIEAVIFASAEPVSRETLARVVGKD---CSIDLLIDDLVEELRDRPYELVSVAGGWQHRT 100 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +AE + R LS L + Y QPITR E+ +I G S + L Sbjct: 101 RPRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNL 160 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL FG+++L DLP + Sbjct: 161 RGAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLPNI 202 >DUF387_Q6LBD4_2-160_PF04079.5 Length = 159 Score = 160 bits (406), Expect = 1e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F + EP++ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFASPEPVTREILARVVGGD---CNIDLIIDDIRDELRGRPYELVAVAGGWQHR 57 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +A + ++ LS+ L IAY QPITR E+ + G S I L Sbjct: 58 TRKVFATAIRTATGLGDQVRPLSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 118 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 159 >gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 540 Score = 160 bits (406), Expect = 1e-38 Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L +A PL+ +LA L + G+ + +VAGG R+ T Sbjct: 167 IEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRMMT 226 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L++ Sbjct: 227 RSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLMQL 286 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 287 DLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 325 >DUF387_Q8KGW4_35-195_PF04079.5 Length = 161 Score = 160 bits (405), Expect = 1e-38 Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP++ LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + T E +LS+A L IAY QPITR E+ G S I Sbjct: 58 TKKIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 117 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 118 VLRGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLPE 160 >gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] Length = 226 Score = 160 bits (405), Expect = 1e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 41 RVEAVIFASAEPVSRETLARVVGKE---CSIDLLIDDLREDLQGRPYELVSVAGGWQHRT 97 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +A+ ++ R LS L + Y QPITR E+ +I G S + L Sbjct: 98 RPRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNL 157 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL F +++L DLP + Sbjct: 158 RGAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNI 199 >gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 231 Score = 159 bits (404), Expect = 2e-38 Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A EP+ E LA+++ +LV VAGG++ T Sbjct: 37 RVEATIFAASEPVGRETLAKIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 93 Query: 62 KPEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + E+ L+++ + L I Y QPITR E+ G S I L Sbjct: 94 RPAYADAIRTAVGGGEKATNLTQSEVLVLMCIGYFQPITRGELSSFFGKEVSRDLIGHLR 153 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI R PG P Y TT EFL FGL +L DLP Sbjct: 154 GAKLIASGPRSPTPGAPYTYVTTKEFLLEFGLDTLRDLPD 193 >gi|19552641|ref|NP_600643.1| predicted transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 192 Score = 159 bits (404), Expect = 2e-38 Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +E++L V P+S LA +L I G++L E A G+R Sbjct: 20 SRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYY 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 80 TRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQL 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 140 RGLVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 178 >gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 229 Score = 159 bits (404), Expect = 2e-38 Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A EP+ E LA ++ +LV VAGG++ T Sbjct: 37 RVEATIFAASEPVGRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 93 Query: 62 KPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + +ER L+ + + L IAY QPITR E+ G S I L Sbjct: 94 RPAYADVIRTAVGRSERAVDLTLSEVLVLMCIAYFQPITRGELSSFFGKEISRDLIGNLR 153 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I R PG P Y TT EFL FGL +L DLP Sbjct: 154 SHGFIASGPRAPQPGAPYTYVTTKEFLLEFGLDTLHDLPD 193 >gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Mycoplasma genitalium G-37] Length = 207 Score = 159 bits (403), Expect = 3e-38 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV G + ++L +L + + G+EL + + Sbjct: 23 ASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALLALERKLADDEQSGVELKKFGNSF 82 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EIRGV+S + Sbjct: 83 SLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGVDSFQIVDD 142 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 143 LIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 185 >gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Oligotropha carboxidovorans] Length = 194 Score = 158 bits (402), Expect = 3e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F + EP++ E LA ++ ELV VAGG++ + Sbjct: 2 GRVEAVIFASPEPVTREILARVVGGD---CNIDLIIDDIRDELRGRPYELVAVAGGWQHR 58 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +A + ++ LS+ L IAY QPITR E+ + G S I L Sbjct: 59 TRKVFATAIRTATGLGDQVRPLSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 119 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 160 >gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 245 Score = 158 bits (400), Expect = 6e-38 Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA++F A EP+S + LA ++ +LV VAGG+R T Sbjct: 43 RVEAVIFAASEPVSRQVLARIVGES---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLT 99 Query: 62 KPEYAEYVERLLKTER-----PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAI 115 +P YA+ + T L+++ + L IAY QPITRAE+ G S I Sbjct: 100 RPAYADAIRSAFGTTVGGSGGAGDLTQSEVLVLMCIAYFQPITRAELSSFFGKEISRDLI 159 Query: 116 KTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L G+I R PG P Y TT FL FGL +L DLP Sbjct: 160 AHLRGAGMIASGPRSPTPGAPYTYVTTKAFLLEFGLDTLRDLPD 203 >DUF387_Q8NQK9_9-167_PF04079.5 Length = 159 Score = 157 bits (399), Expect = 7e-38 Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +E++L V P+S LA +L I G++L E A G+R Sbjct: 1 SRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 61 TRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQL 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 121 RGLVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 159 >gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 204 Score = 157 bits (399), Expect = 7e-38 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLE---------IPPXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + + G EL EV Sbjct: 24 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 83 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 84 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 143 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 144 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 189 >gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesorhizobium loti MAFF303099] Length = 233 Score = 157 bits (399), Expect = 7e-38 Identities = 57/160 (35%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F AGEP+S E L ++ +LV VAGG+R T Sbjct: 41 RVEATIFAAGEPISREVLTRIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLT 97 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 98 RPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLR 157 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT FL FGL++L DLP Sbjct: 158 SFGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 197 >gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 157 bits (399), Expect = 7e-38 Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE+LL+ AG E L +QL E+LEI GL + + Y L Sbjct: 5 GIIESLLYTAGDEGLDEKQLLEILEIN------QAKLSELISSYTSSGLIIQKFGSTYIL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +K E + Y+E+L++ + KLS+AA+ETL+IIAY QP++R++IE IRG+NSDGA++TL+ Sbjct: 59 TSKKEASPYIEQLIEQKSNMKLSQAAMETLSIIAYNQPLSRSDIELIRGINSDGAVRTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGLIE + R TTD FL+ FG++ ++DLP Sbjct: 119 ARGLIEA--KDVENSRSHALQTTDLFLNVFGIEKIEDLP 155 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 157 bits (399), Expect = 8e-38 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 1 AILEALLYTSGDEGLEQKQIIDILDINLNQLEDLVSKYHSH------GLTIQRYGSTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 55 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E R TTD FL+ FG+++LD LP Sbjct: 115 ARGLVEAKDVDHS--RSHHLITTDLFLNVFGIENLDALP 151 >gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphylococcus epidermidis ATCC 12228] Length = 180 Score = 157 bits (399), Expect = 8e-38 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 5 AILEALLYTSGDEGLEQKQIIDILDINLNQLEDLVSKYHSH------GLTIQRYGSTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 59 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E R TTD FL+ FG+++LD LP Sbjct: 119 ARGLVEAKDVDHS--RSHHLITTDLFLNVFGIENLDALP 155 >DUF387_Q6AGG0_22-189_PF04079.5 Length = 168 Score = 157 bits (399), Expect = 8e-38 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLE---------IPPXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + + G EL EV Sbjct: 3 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 62 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 63 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 122 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 123 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 168 >gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [Arthrobacter sp. FB24] Length = 229 Score = 157 bits (398), Expect = 9e-38 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 24/183 (13%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-------------- 46 A IEA+L V +P + +LA L + Sbjct: 29 AAIEAVLMVIDQPATAVELAAGLNLTVDTVEQLLAELQREYNGYTVNAPDSDVANTAHMN 88 Query: 47 ---------GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP 97 G EL +AGG+R+ ++ ++A+ V + + +L++AALETLA+IAYRQP Sbjct: 89 TAGTTSRPRGFELRNIAGGWRIYSRTDFADVVGGFVLEGQTARLTQAALETLAVIAYRQP 148 Query: 98 ITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 ++RA + IRGVN D ++TL++RGLIE+ G G LY TT FL+ G+ S+ +L Sbjct: 149 VSRARVSAIRGVNVDSVVRTLMQRGLIEDSGTDPESG-AILYRTTSYFLERMGIGSVAEL 207 Query: 158 PPL 160 P L Sbjct: 208 PQL 210 >gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Treponema pallidum subsp. pallidum str. Nichols] Length = 192 Score = 156 bits (397), Expect = 1e-37 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG---LELVEVAGGY 57 A++EA+LFV G LS LA L + G LEL G Sbjct: 18 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 77 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 78 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 137 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 138 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 180 >gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Corynebacterium diphtheriae NCTC 13129] Length = 184 Score = 156 bits (397), Expect = 1e-37 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V +P S+ LA E P G+E+ E G+RL Sbjct: 7 SQIESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLY 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL Sbjct: 67 TVKRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQL 126 Query: 121 RGLIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 127 RGLIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 170 >gi|71083666|ref|YP_266386.1| segregation and condensation protein b [Candidatus Pelagibacter ubique HTCC1062] Length = 233 Score = 156 bits (397), Expect = 1e-37 Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 6/157 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EPL ++ + + G+ LV ++ + +T Sbjct: 26 VEAIIFAAAEPLDIDTIESKISKKIDVLKSLQKLQKEYSLR---GINLVCISNKWSFRTS 82 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLER 121 + + + + KLSRAA+ETLAII Y QP+TRAEIEEIRGV ++ L+E Sbjct: 83 ENLSNLMSQ--EKTVEKKLSRAAVETLAIIVYHQPVTRAEIEEIRGVAFGTNTLEILMEL 140 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 ++ GR+DVPG+P YGTTD+FL +F L+ L DLP Sbjct: 141 NWVKPQGRKDVPGKPIQYGTTDDFLSHFSLQKLSDLP 177 >DUF387_Q981J7_40-198_PF04079.5 Length = 159 Score = 156 bits (396), Expect = 1e-37 Identities = 57/160 (35%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F AGEP+S E L ++ +LV VAGG+R T Sbjct: 2 RVEATIFAAGEPISREVLTRIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLT 58 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 59 RPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLR 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT FL FGL++L DLP Sbjct: 119 SFGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 158 >DUF387_SCPB_23-185_PF04079.5 Length = 163 Score = 156 bits (396), Expect = 1e-37 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV G + ++L +L + + G+EL + + Sbjct: 1 ASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALLALERKLADDEQSGVELKKFGNSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EIRGV+S + Sbjct: 61 SLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGVDSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 121 LIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 163 >DUF387_Q6NHE4_7-170_PF04079.5 Length = 164 Score = 156 bits (396), Expect = 2e-37 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V +P S+ LA E P G+E+ E G+RL Sbjct: 1 SQIESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL Sbjct: 61 TVKRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQL 120 Query: 121 RGLIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 121 RGLIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 164 >DUF387_O83471_18-180_PF04079.5 Length = 163 Score = 155 bits (394), Expect = 3e-37 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG---LELVEVAGGY 57 A++EA+LFV G LS LA L + G LEL G Sbjct: 1 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 61 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 121 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 163 >DUF387_Q7UE48_165-325_PF04079.5 Length = 161 Score = 155 bits (393), Expect = 3e-37 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IEA+L +A PL+ +LA L + G+ + +VAGG R+ Sbjct: 1 ARIEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRM 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L+ Sbjct: 61 MTRSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 121 QLDLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 161 >gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 232 Score = 155 bits (392), Expect = 4e-37 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 29 GRVEAVIFAAPEPVPREVLARVVG---RACNLDLIVDDIRDELRGRPYELVSVAGGWQHR 85 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +AE + ++ LS+A L IAY QPITR E+ G S I L Sbjct: 86 TRKGFAEAIRAATGLGDQVRPLSQAESLILLCIAYYQPITRGELGRFFGQEVSRDLIGYL 145 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 146 RRLGFIASGPRAPQPGAPYTYVTTNGFLSHFGFATLRDLPDM 187 >gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrobacterium tumefaciens str. C58] Length = 250 Score = 153 bits (389), Expect = 1e-36 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 41 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + + + P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 98 AGDLSFVIRT--EEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 155 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 156 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 195 >DUF387_Q92Q27_30-185_PF04079.5 Length = 156 Score = 153 bits (387), Expect = 2e-36 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 2 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 59 AADLSFVVNT--DEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP +GTT +FLD+FGL+ + DLP + Sbjct: 117 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGI 156 >DUF387_SCPB_7-168_PF04079.5 Length = 162 Score = 153 bits (387), Expect = 2e-36 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 1 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 61 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 121 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 162 >gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycoplasma penetrans HF-2] Length = 197 Score = 153 bits (387), Expect = 2e-36 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 7 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 66 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 67 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 126 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 127 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 168 >DUF387_Q8UEP8_40-195_PF04079.5 Length = 156 Score = 152 bits (385), Expect = 3e-36 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 2 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + + + P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 59 AGDLSFVIRT--EEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 117 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 156 >gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 181 Score = 152 bits (385), Expect = 3e-36 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA++F+ G+ ++ LA+ +I G+ + + L Sbjct: 5 SQVEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINIEIDSEIVYLS 62 Query: 61 TKPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L Sbjct: 63 TNPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLE 122 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 ER + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 123 ERKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELPD 162 >DUF387_Q7P2S1_5-163_PF04079.5 Length = 159 Score = 151 bits (384), Expect = 4e-36 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA++F+ G+ ++ LA+ +I G+ + + L Sbjct: 1 SQVEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINIEIDSEIVYLS 58 Query: 61 TKPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L Sbjct: 59 TNPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLE 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 ER + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 119 ERKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELPD 158 >gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 239 Score = 151 bits (384), Expect = 4e-36 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 31 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 88 AADLSFVVNT--DEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 145 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP +GTT +FLD+FGL+ + DLP + Sbjct: 146 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGI 185 >gi|57284636|gb|AAW36730.1| segregation and condensation protein B [Staphylococcus aureus subsp. aureus COL] Length = 180 Score = 151 bits (384), Expect = 4e-36 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L++ GL + Y L Sbjct: 5 GILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSH------GLMIQRFGMTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E A Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 59 TTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 119 AKGLVEA--KVVNEQRSQQLITTDLFLNVFGISNIEDLP 155 >gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 364 Score = 150 bits (381), Expect = 9e-36 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 188 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 247 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 248 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 307 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 308 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 349 >gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulobacter crescentus CB15] Length = 221 Score = 150 bits (380), Expect = 1e-35 Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 13 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 69 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 70 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI GRR PGRP +GTTD F++++GL +L DLP + Sbjct: 128 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGI 166 >gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 195 Score = 149 bits (378), Expect = 2e-35 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA+L++ GE +S QL L++ G+ +VE ++ Sbjct: 5 IIEAILYLQGEKGVSSLQLQNCLKLAKISQARKLLKDFAIEFNRQKRGILVVEFDDIFKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR-GVNSDGAIKTL 118 T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IR G+NSD + +L Sbjct: 65 VTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVGSL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 125 LAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLPK 165 >DUF387_SCPB_188-349_PF04079.5 Length = 162 Score = 149 bits (378), Expect = 2e-35 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 1 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 61 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 121 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 162 >DUF387_Q5ZZQ3_4-166_PF04079.5 Length = 163 Score = 149 bits (377), Expect = 3e-35 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA+L++ GE +S QL L++ G+ +VE ++ Sbjct: 2 IIEAILYLQGEKGVSSLQLQNCLKLAKISQARKLLKDFAIEFNRQKRGILVVEFDDIFKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR-GVNSDGAIKTL 118 T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IR G+NSD + +L Sbjct: 62 VTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVGSL 121 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 122 LAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLPK 162 >DUF387_Q9A6S9_11-166_PF04079.5 Length = 156 Score = 148 bits (376), Expect = 3e-35 Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 3 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 60 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI GRR PGRP +GTTD F++++GL +L DLP + Sbjct: 118 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGI 156 >gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 244 Score = 148 bits (374), Expect = 6e-35 Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EAL+F + P+S + L++ L P G+ LV V + +T Sbjct: 38 EALVFASAAPVSFKSLSDRL---PDGVDIRAIMEELKGDYERRGVNLVRVEDSWAFRTAG 94 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R + KLSRAALE L++IAY QP+TRAEIEEIRGV S G + LLE G Sbjct: 95 DLAFLMSR--DAVQQKKLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETG 152 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT EFLD+FGL+ L DLP + Sbjct: 153 WVRMRGRRRAPGRPVTYGTTLEFLDHFGLEELRDLPGI 190 >gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methanosarcina mazei Go1] Length = 371 Score = 148 bits (374), Expect = 6e-35 Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P GLE++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLMKITGKPKKNVSSAVQELMGAYSSRMSGLEILDLGDRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 66 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKKND 151 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 147 bits (372), Expect = 9e-35 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L+I GL + Y L Sbjct: 1 GILESLLFTAGDEGLDEKQLLEILDISKDQLVELIENYSSH------GLIIQRFGTTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 55 TTKKEASMYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 115 AKGLVEA--KVVNEQRSQQLITTDLFLNVFGISNIEDLP 151 >gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 181 Score = 146 bits (370), Expect = 1e-34 Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +E+++F+ G+ ++ LA+ +I G+ L + L T Sbjct: 6 QVESIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINLEVDSEIVYLST 63 Query: 62 KPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P Y E + + E +P KLS A++ETL+IIAY+QPIT++EIE IRGV+ D + L E Sbjct: 64 NPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPITKSEIESIRGVSVDRIVSNLEE 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R + G+++ + LY TD+FL Y G+KS+ +LP Sbjct: 124 RKFVRNCGKQESGRKANLYEVTDKFLSYLGIKSITELPD 162 >gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] Length = 200 Score = 146 bits (370), Expect = 2e-34 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L + P+ E LA ++ E+ +VAGG+ +T Sbjct: 31 RIEAVLSASASPVPREDLARVVGQGASVDLLVEDLAADLEGR---AFEINQVAGGWIFRT 87 Query: 62 KPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 88 RATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLH 147 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 148 ARDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLPD 187 >DUF387_Q8KVW0_30-188_PF04079.5 Length = 159 Score = 146 bits (369), Expect = 2e-34 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L + P+ E LA ++ E+ +VAGG+ +T Sbjct: 2 RIEAVLSASASPVPREDLARVVGQGASVDLLVEDLAADLEGR---AFEINQVAGGWIFRT 58 Query: 62 KPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 59 RATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLH 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 119 ARDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLPD 158 >gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methanosarcina acetivorans C2A] Length = 374 Score = 146 bits (369), Expect = 2e-34 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 9 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 69 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 125 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 154 >gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Mycoplasma synoviae 53] Length = 185 Score = 145 bits (368), Expect = 3e-34 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEALL++ G E L+LEQ+ E+ + GL++V ++L Sbjct: 1 MIEALLYIQGDEGLNLEQVKEVFNLNNTHEAKKIMQDFQKDFNNLDRGLKVVVFDEIFKL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ YV +L+ T +L+ AA+E IIAY+ PITR +I +IRG SD + LL Sbjct: 61 ATRESVRAYVSKLVTTTGKQRLTSAAIEVAGIIAYKGPITRGQISKIRGAVSDHIVNNLL 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++G+I EVG G P LY + +F D+F + S DLP + Sbjct: 121 KKGIIHEVGVSHTQGNPVLYEVSSQFYDHFKISSKQDLPKM 161 >gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 281 [Methanosarcina barkeri str. fusaro] Length = 371 Score = 145 bits (368), Expect = 3e-34 Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLTKITGKPKKTVLSAIQKLTEIYSSRGSGIEILDLEERYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY++ + P +LS L TL++IAY QP+ ++++ ++RG + IK L+ER Sbjct: 66 KPEYSDLMR----EVAPKELSTPKLRTLSMIAYHQPLLQSDLIDMRGSGAYDHIKDLVER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKRND 151 >gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 281 [Rubrobacter xylanophilus DSM 9941] Length = 185 Score = 145 bits (368), Expect = 3e-34 Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + P+S LA + G+ L EVAGG++L T Sbjct: 6 LVEAVLFSSARPVSRGALASCTGLSAGEVERALAELAGRYSPERSGVVLREVAGGFQLAT 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P + VER RP LS AA E LA + Y P+TR I +RGVNSD ++TL+ER Sbjct: 66 NPACSAAVERFRGEARPAPLSAAAHEVLACVLYLGPLTRGAISRVRGVNSDAVVRTLIER 125 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GL+ E G + G+ AL T++FL G S +D PPL Sbjct: 126 GLLAEKGSSE-EGQAALLDVTEDFLVAAGASSREDFPPL 163 >DUF387_Q8TI25_8-157_PF04079.5 Length = 150 Score = 145 bits (366), Expect = 5e-34 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 2 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 62 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 118 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 147 >DUF387_Q6MTL7_7-171_PF04079.5 Length = 165 Score = 143 bits (362), Expect = 1e-33 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AIIE LLF+ G+ +SL + +L+ P + Sbjct: 1 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 61 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 121 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 165 >gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 209 Score = 143 bits (362), Expect = 1e-33 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AIIE LLF+ G+ +SL + +L+ P + Sbjct: 7 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 67 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 127 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 171 >gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 196 Score = 143 bits (361), Expect = 2e-33 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + P+S E LA ++ ++ V G+ L+T Sbjct: 28 RIEAVLFASATPVSREALARVVGQGVSVELLIDDLSAELESR---SFQVAHVKDGWFLRT 84 Query: 62 KPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + YA + + L+ + LA IAY QPITR +++I G + S I L Sbjct: 85 RSAYASAIRDAQSAGHQVMDLNAFDVAVLAAIAYHQPITREGLKDIFGKDISRDLIGRLH 144 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 +RGLI R G P + TTD+FL F L++L DLP Sbjct: 145 DRGLIGNGPRAPRRGAPYTFVTTDQFLLAFDLETLQDLPD 184 >DUF387_O28692_5-154_PF04079.5 Length = 150 Score = 142 bits (359), Expect = 3e-33 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 2 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER + R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 62 KPQYAEYVERFT----VREFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL++ + GR + TT+EF YFGL S + Sbjct: 118 GLVK----AEKKGRSTILTTTEEFATYFGLDSAE 147 >gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 281 [Methanococcoides burtonii DSM 6242] Length = 367 Score = 141 bits (357), Expect = 5e-33 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA+LF AGE + + LA+L+ G+E++++ G Y +Q Sbjct: 6 IIEAVLFAAGEAVDTQTLAKLINKSAKNVTPVIRSLMEEYSTRESGMEIIDLGGRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+Y + + P +L L TL+++AY QP+ ++E+ ++RG + I+ L +R Sbjct: 66 KPKYTDVIS----PIAPKELKAPILRTLSMVAYHQPVVQSELVDMRGNSVYDHIRELKDR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G IE V GR L TT F DYFGL + Sbjct: 122 GFIEAVPH----GRTKLLQTTPLFADYFGLDRNE 151 >gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archaeoglobus fulgidus DSM 4304] Length = 166 Score = 141 bits (356), Expect = 7e-33 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 6 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER + R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 66 KPQYAEYVERFT----VREFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL++ + GR + TT+EF YFGL S + Sbjct: 122 GLVK----AEKKGRSTILTTTEEFATYFGLDSAE 151 >gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 182 Score = 137 bits (346), Expect = 1e-31 Identities = 72/149 (48%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P+ L +LA +L + G+ L VAGGYRL P A ++ Sbjct: 24 RPVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAP 83 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 84 LLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRG-ASAGTVLTLQERELVKVVGRSD 142 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 143 AVGQPLLYGTTEKFLLEFGLGSLQDLPPL 171 >gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 236 Score = 136 bits (343), Expect = 2e-31 Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA +F + P+ E LA L+ ELV VAGG++ + Sbjct: 28 GRVEAAIFASPTPVPRETLARLIG---RACVLDELIADIRDELKPRPYELVFVAGGFQHR 84 Query: 61 TKPEYAEYVERLLK--TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 +K + E + +L PP LS+ ++ IAY QP+TR+ I + G S I Sbjct: 85 SKARFTEAIRAVLGGRETGPPDLSKTESLVISAIAYLQPVTRSSISRLLGKAISRDIIAK 144 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L LI R PG P Y TT FL FGL SL DLP + Sbjct: 145 LKRLDLIGAGPRMAEPGAPFSYVTTPTFLSVFGLASLRDLPEI 187 >gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 281 [Trichodesmium erythraeum IMS101] Length = 173 Score = 135 bits (340), Expect = 5e-31 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IEA+L++ G+ LS+ ++AE+ + LE+VE GY LQ Sbjct: 6 SKIEAILYLKGKALSISEIAEIAKCERGQIKDALIELMSEYAHRHTALEVVETEKGYSLQ 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 KP + E +E L++ E L AL TLA IA + IT++E+ +IRG + L+ Sbjct: 66 LKPTFTELIESLIEPE----LGVGALRTLAAIALKGGITQSELVDIRGSGVYQHVPELVS 121 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I RR R TD+F YF LD LP Sbjct: 122 LGFIR--KRRQKESRSYWLQVTDKFHQYF---QLDQLPQ 155 >DUF387_Q9RTA4_13-171_PF04079.5 Length = 159 Score = 135 bits (340), Expect = 5e-31 Identities = 72/149 (48%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P+ L +LA +L + G+ L VAGGYRL P A ++ Sbjct: 12 RPVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAP 71 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 72 LLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRG-ASAGTVLTLQERELVKVVGRSD 130 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 131 AVGQPLLYGTTEKFLLEFGLGSLQDLPPL 159 >gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (ypuH-like) [Pyrococcus abyssi GE5] Length = 192 Score = 132 bits (334), Expect = 2e-30 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQKVIHLM---PKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 125 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 160 >gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyrococcus furiosus DSM 3638] Length = 188 Score = 132 bits (334), Expect = 3e-30 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLSL++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+LS L+TLA+IAY QP+ +++I ++RG + I+ L Sbjct: 68 MQVKQEYSQRVIPLM---PKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 LE GLI + R L GTT++F + +G D Sbjct: 125 LEMGLI----YAEPYERTRLLGTTEKFAELYGFPEND 157 >gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 281 [Deinococcus geothermalis DSM 11300] Length = 176 Score = 132 bits (334), Expect = 3e-30 Identities = 72/149 (48%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P++ ++A LL +P G E+ VAGGYRL P A ++ Sbjct: 18 RPVTRREVAALLGLPEEAAARALDAFAGVLRDAGLGFEVEAVAGGYRLVVPPALAAHLAP 77 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LA+IAYRQPITRAEIE +RG S G + TL ER L++ VGR D Sbjct: 78 LLAPPPLPPLSAAALEVLAVIAYRQPITRAEIEAMRG-GSAGTVVTLQERELVKVVGRSD 136 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT+ FL FGL SL+DLPPL Sbjct: 137 AVGQPLLYGTTERFLLEFGLTSLEDLPPL 165 >gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 281 [Crocosphaera watsonii WH 8501] Length = 155 Score = 132 bits (333), Expect = 3e-30 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL +A+ E LE+VE GY LQ + Sbjct: 8 IEAILYLKGQPLSLMDIAQCAECEVDTAQEAMMELISDYAYRDSALEVVETETGYSLQLR 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + + L P +L + AL TLA IA + PI + E+ E+RG + ++ L+E G Sbjct: 68 SVFDD----LTDDIIPAELGKGALRTLAAIALKNPIVQTELIELRGSTAYQHVQELVEMG 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 + RR GR L T++F YF +D P Sbjct: 124 FVR--KRRQESGRSYLLEVTNKFHQYF---EIDQFPQ 155 >gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synechocystis sp. PCC 6803] Length = 162 Score = 132 bits (333), Expect = 3e-30 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 7 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 67 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + R+ GR TD+F YF + SL Sbjct: 123 FVR--KRKQTEGRSYWLEITDKFHQYFEIDSL 152 >DUF387_P74610_5-159_PF04079.5 Length = 155 Score = 132 bits (333), Expect = 3e-30 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 3 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 63 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + R+ GR TD+F YF + SL Sbjct: 119 FVR--KRKQTEGRSYWLEITDKFHQYFEIDSL 148 >gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] Length = 198 Score = 131 bits (332), Expect = 4e-30 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 9 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + RRD R T +F YF ++ L Sbjct: 125 FVR--KRRDNESRSYSLQVTPKFHQYFQIEQL 154 >gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Nostoc punctiforme PCC 73102] Length = 180 Score = 131 bits (331), Expect = 5e-30 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 9/158 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL ++AE LE++E GY LQ + Sbjct: 9 IEAILYLKGKPLSLGEIAEYAACDRAAVKEGIIELMDNYAHRDSALEVIETPDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ +RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGVGALRTLAAIALNSPILQSDLINLRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RRD R T +F YF ++ LP + Sbjct: 125 FIR--KRRDSDSRSYSLQVTPKFHQYFQIE---QLPQI 157 >DUF387_Q9V1Y8_8-160_PF04079.5 Length = 153 Score = 131 bits (331), Expect = 5e-30 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 1 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQKVIHLM---PKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 118 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 153 >gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 177 Score = 130 bits (328), Expect = 1e-29 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 20 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 80 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + IE +R GR +++F F + LP L Sbjct: 136 QNFIE--RKRQSEGRSYWLTLSEKFHRTFSV-----LPDL 168 >gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptional regulator containing the HTH domain [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 130 bits (327), Expect = 1e-29 Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 1/88 (1%) Query: 73 LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRD 131 ++ + KLSRAA+ETLAIIAY QP+TRAEIEE+RGV S G + L G I GRR Sbjct: 1 MERSQERKLSRAAVETLAIIAYHQPVTRAEIEEVRGVALSKGTMDILFSAGWIRPKGRRR 60 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPP 159 PGRP + TTD FLD+FGL+SL DLP Sbjct: 61 TPGRPLTWATTDGFLDHFGLESLSDLPG 88 >DUF387_Q8YLY0_7-157_PF04079.5 Length = 151 Score = 128 bits (324), Expect = 3e-29 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 3 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 63 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + RRD R T +F YF ++ L Sbjct: 119 FVR--KRRDNESRSYSLQVTPKFHQYFQIEQL 148 >DUF387_Q7V7Q5_20-168_PF04079.5 Length = 149 Score = 128 bits (322), Expect = 5e-29 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 1 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 61 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + IE +R GR +++F F + LP L Sbjct: 117 QNFIE--RKRQSEGRSYWLTLSEKFHRTFSV-----LPDL 149 >gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeobacter violaceus PCC 7421] Length = 158 Score = 127 bits (320), Expect = 1e-28 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ PL+LEQL+ E LE+ + A GY LQ Sbjct: 9 RLEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQL 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ + Sbjct: 69 RPPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGK 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 G + R GR T++F YF ++ + DL Sbjct: 125 GFVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 156 >gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Synechococcus elongatus PCC 6301] Length = 183 Score = 126 bits (319), Expect = 1e-28 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 7 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 67 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +G I+ RR GR TD+F YF Sbjct: 123 QGFIQ--KRRQSNGRSYWLEVTDKFHQYF 149 >DUF387_Q7NJH4_8-156_PF04079.5 Length = 149 Score = 126 bits (317), Expect = 2e-28 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ PL+LEQL+ E LE+ + A GY LQ Sbjct: 2 RLEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQL 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ + Sbjct: 62 RPPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGK 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 G + R GR T++F YF ++ + DL Sbjct: 118 GFVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 149 >DUF387_Q5N339_7-162_PF04079.5 Length = 156 Score = 125 bits (315), Expect = 4e-28 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 1 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 61 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +G I+ RR GR TD+F YF Sbjct: 117 QGFIQ--KRRQSNGRSYWLEVTDKFHQYF 143 >gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyrococcus horikoshii OT3] Length = 195 Score = 125 bits (315), Expect = 4e-28 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+ +VAG + Sbjct: 11 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYAERKSAIEVTKVAGDKWV 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IA+ QP+ +++I ++RG + IK L Sbjct: 71 MQVKQEYSQRVIHLM---PKPELTAGELKTLALIAFLQPVEQSKIVKLRGSQAYEHIKRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 128 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 163 >gi|57160221|dbj|BAD86151.1| predicted transcription regulator, YpuH-like family [Thermococcus kodakarensis KOD1] Length = 194 Score = 124 bits (312), Expect = 8e-28 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQRVIHLM---PKPDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 125 VEMGLV----YAEPYERTKLLGTTKKFAELYGFPEND 157 >gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 165 Score = 123 bits (310), Expect = 1e-27 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 8 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 67 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 68 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 124 QDFIE--RRRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 161 >DUF387_Q7U6P4_8-162_PF04079.5 Length = 155 Score = 123 bits (310), Expect = 2e-27 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 1 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 61 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 117 QDFIE--RRRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 154 >DUF387_Q5JDN0_8-160_PF04079.5 Length = 153 Score = 122 bits (308), Expect = 2e-27 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 1 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQRVIHLM---PKPDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 118 VEMGLV----YAEPYERTKLLGTTKKFAELYGFPEND 150 >DUF387_Q6F0R6_7-169_PF04079.5 Length = 163 Score = 122 bits (308), Expect = 3e-27 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AI+E LLFV G+ +SL L +LE P + + Sbjct: 1 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 61 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L ++ LI+ VG+ LY TD F F + + LP + Sbjct: 121 RLRQKKLIKAVGKTSTG--ANLYTITDNFFKLFNITGGFEALPQI 163 >gi|50365366|ref|YP_053791.1| chromosomal segregation/condensation protein [Mesoplasma florum L1] Length = 209 Score = 122 bits (308), Expect = 3e-27 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AI+E LLFV G+ +SL L +LE P + + Sbjct: 7 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 67 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L ++ LI+ VG+ LY TD F F + + LP + Sbjct: 127 RLRQKKLIKAVGKTSTG--ANLYTITDNFFKLFNITGGFEALPQI 169 >gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator containing the HTH domain [uncultured euryarchaeote Alv-FOS4] Length = 169 Score = 120 bits (303), Expect = 1e-26 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 8/151 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF P+ + ++A++ + +E+V + Y +Q Sbjct: 7 IVEAVLFSTDRPMRVGEIAKIGGLRSEEVSKAMRKLREEYEQRDGAIEIVRIGNKYVMQL 66 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + EY Y + K E L+TLAIIAY QPIT+ ++ E+ G + L +R Sbjct: 67 RDEYVNYGYSVGKKEMNDD----VLKTLAIIAYYQPITQRKLREMLGTKVYQHVDELKKR 122 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GLI G++ GR + TT F +YFG+ Sbjct: 123 GLI--YGKKS--GRTEILRTTKRFNEYFGID 149 >gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation and condensation protein ScpB [Prochlorococcus marinus str. NATL2A] Length = 168 Score = 119 bits (301), Expect = 2e-26 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G P S +++AELL+ LE+ E Y L+ Sbjct: 11 AKIEAILYLKGRPTSSKEMAELLDKDIAEIEKALWELKAGYAQRDTSLEINENKSHYSLE 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P LS A L TLA +A ++ I ++E+ ++RG + IK L+E Sbjct: 71 LRQGLGELVQDLL----PADLSIATLRTLATVALKKKILQSELVDLRGSGAYDHIKELVE 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 + +E RR GR +++F F + Sbjct: 127 KNFVE--RRRQKDGRSFWLTLSEKFHQTFSV 155 >gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 160 Score = 119 bits (301), Expect = 2e-26 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 3 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 63 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +E +R GR +++F F Sbjct: 119 MNFVE--RKRQREGRSFWLTLSEKFHRTF 145 >gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 297 Score = 119 bits (300), Expect = 2e-26 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 127 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 186 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 187 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 246 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 247 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 290 >gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluconobacter oxydans 621H] Length = 129 Score = 119 bits (299), Expect = 3e-26 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ + LLE LI GR++VPG Sbjct: 18 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 77 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 78 RPVLWGTTASFLESFGLPDLRGLP 101 >DUF387_Q5FQ51_2-103_PF04079.5 Length = 102 Score = 118 bits (297), Expect = 5e-26 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ + LLE LI GR++VPG Sbjct: 17 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 76 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 77 RPVLWGTTASFLESFGLPDLRGLP 100 >DUF387_Q7VC16_3-151_PF04079.5 Length = 149 Score = 117 bits (295), Expect = 9e-26 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 1 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 61 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +E +R GR +++F F Sbjct: 117 MNFVE--RKRQREGRSFWLTLSEKFHRTF 143 >DUF387_Q7UPG2_127-292_PF04079.5 Length = 166 Score = 115 bits (290), Expect = 3e-25 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 1 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 61 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 120 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 121 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 164 >gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermotoga maritima MSB8] Length = 167 Score = 114 bits (286), Expect = 8e-25 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F + ++LE+L ++LE P G+ L EV G YR Sbjct: 5 AAIEALIFASN-GITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 63 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V +L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 64 TKPEYAGFVSKLSG-RKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 123 MGIV----RKKRKGKSYLYQLSPSFVE 145 >gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 113 bits (285), Expect = 1e-24 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ G P+S + L+E+ +EL E+ Y L+ Sbjct: 4 RVEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLEL 63 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 64 KSILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNK 119 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 120 KFI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 149 >DUF387_Q9WYW4_5-159_PF04079.5 Length = 155 Score = 113 bits (285), Expect = 1e-24 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F + ++LE+L ++LE P G+ L EV G YR Sbjct: 1 AAIEALIFASN-GITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 59 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V +L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 60 TKPEYAGFVSKLSG-RKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 119 MGIV----RKKRKGKSYLYQLSPSFVE 141 >DUF387_Q7V1G4_3-155_PF04079.5 Length = 153 Score = 113 bits (285), Expect = 1e-24 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ G P+S + L+E+ +EL E+ Y L+ Sbjct: 2 RVEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLEL 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 62 KSILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNK 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 118 KFI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 147 >gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongatus BP-1] Length = 173 Score = 113 bits (283), Expect = 2e-24 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ +PL+L +LA L LE+V++ Y LQ Sbjct: 13 RVEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQL 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL Sbjct: 73 KSAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTL 128 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 G I RRD R + T+ F YF + L Sbjct: 129 GFI--RRRRDSQSRSYILQVTERFHQYFQVDHL 159 >gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 136 Score = 111 bits (278), Expect = 8e-24 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 1/82 (1%) Query: 80 KLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRDVPGRPAL 138 KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E G + GRR PGRP Sbjct: 1 KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSRGTLHVLMEAGWVRFRGRRRTPGRPVT 60 Query: 139 YGTTDEFLDYFGLKSLDDLPPL 160 GTT +FLD+FGL+ L DLP L Sbjct: 61 LGTTRDFLDHFGLEELRDLPGL 82 >DUF387_Q8DKL3_12-162_PF04079.5 Length = 151 Score = 110 bits (277), Expect = 9e-24 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ +PL+L +LA L LE+V++ Y LQ Sbjct: 2 RVEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQL 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL Sbjct: 62 KSAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTL 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 G I RRD R + T+ F YF + L Sbjct: 118 GFI--RRRRDSQSRSYILQVTERFHQYFQVDHL 148 >gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 505 Score = 105 bits (263), Expect = 4e-22 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 356 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 415 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV + Sbjct: 416 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 469 >DUF387_Q9K079_356-484_PF04079.5 Length = 129 Score = 104 bits (260), Expect = 9e-22 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 1 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 60 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV + Sbjct: 61 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 114 >DUF387_Q6L0G6_6-153_PF04079.5 Length = 148 Score = 99.6 bits (248), Expect = 2e-20 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ EPL + +A+ L++ LE+ ++ Y++Q Sbjct: 3 VEAILYSCEEPLKVSDIADYLKVSNDDVIRAMKLIARSYNEINSTLEIKKIGNKYKIQLS 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V +K L + + L+ I + + E+ E G N ++K L Sbjct: 63 NDFNDVVYPFVK----KDLDKRDIAMLSYIYGKPGVIAGELRENFGYNFMESVKKLKAEK 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 LI R+ Y T F F +K Sbjct: 119 LITSHKYRNT----FKYHVTKNFYVRFNVKD 145 >gi|48430671|gb|AAT43536.1| thiosulfate sulfurtransferase [Picrophilus torridus DSM 9790] Length = 153 Score = 99.6 bits (248), Expect = 2e-20 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ EPL + +A+ L++ LE+ ++ Y++Q Sbjct: 8 VEAILYSCEEPLKVSDIADYLKVSNDDVIRAMKLIARSYNEINSTLEIKKIGNKYKIQLS 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V +K L + + L+ I + + E+ E G N ++K L Sbjct: 68 NDFNDVVYPFVK----KDLDKRDIAMLSYIYGKPGVIAGELRENFGYNFMESVKKLKAEK 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 LI R+ Y T F F +K Sbjct: 124 LITSHKYRNT----FKYHVTKNFYVRFNVKD 150 >gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 171 Score = 97.3 bits (242), Expect = 1e-19 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 15 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 74 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ E LS+ LA +A + + + + G +D I L Sbjct: 75 KEYYDFAYRVMEPE----LSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 130 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 LI + G G + F FG+ Sbjct: 131 LIRTS--KKGNGTAIYLG--ENFEKVFGI 155 >DUF387_Q97B36_13-163_PF04079.5 Length = 151 Score = 94.9 bits (236), Expect = 5e-19 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 3 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ E LS+ LA +A + + + + G +D I L Sbjct: 63 KEYYDFAYRVMEPE----LSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 LI + G G + F FG+ Sbjct: 119 LIRTS--KKGNGTAIYLG--ENFEKVFGI 143 >DUF387_Q9HKK2_10-161_PF04079.5 Length = 152 Score = 90.3 bits (224), Expect = 2e-17 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 3 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y E PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 63 SQYFS--EAYA--VSPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 118 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GL++ + + G +Y +F YFG+ Sbjct: 119 GLVKLINK----GNSKIYTLGRKFESYFGIS 145 >gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 179 Score = 90.3 bits (224), Expect = 2e-17 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 12 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 71 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y E PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 72 SQYFS--EAYA--VSPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GL++ + + G +Y +F YFG+ Sbjct: 128 GLVKLINK----GNSKIYTLGRKFESYFGIS 154 >gi|68141196|gb|EAM94485.1| hypothetical protein FaciDRAFT_1595 [Ferroplasma acidarmanus Fer1] Length = 162 Score = 80.7 bits (199), Expect = 1e-14 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + EP+ ++AE L I L + + Y+++ Sbjct: 10 RIEAILFSSKEPVKASEIAEYLNITNAEFIKAIKEISRNYENIESSLIVGQFGNSYKIKL 69 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYR---QPITRAEIEEIRGVNSDGAIKTL 118 E+ V+ ++ E K L L+ I Y+ + I+ + + G ++ L Sbjct: 70 SEEFVPVVDPFIEKEFTEK----QLAMLSYI-YKMNGEAIS-GNLRDNFGYAYKEDLEKL 123 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 + G++ R+ Y T EF F + Sbjct: 124 KKGGMVSSRKYRNT----HKYKVTTEFHRKFNIN 153 >gi|13475236|ref|NP_106800.1| hypothetical protein msr6263 [Mesorhizobium loti MAFF303099] Length = 78 Score = 64.9 bits (158), Expect = 6e-10 Identities = 19/42 (45%), Positives = 22/42 (52%) Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 + GLI R PG P Y TT FL FGL++L DLP Sbjct: 1 MRSFGLIASGPRSPTPGAPYTYVTTKHFLLEFGLETLRDLPD 42 >gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia mallei FMH] Length = 85 Score = 58.7 bits (142), Expect = 5e-08 Identities = 22/77 (28%), Positives = 32/77 (41%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERP 78 KP Y++R + R Sbjct: 69 KPAMRTYLDRCIPRSRR 85 >gi|24379105|ref|NP_721060.1| putative transcriptional regulator [Streptococcus mutans UA159] Length = 154 Score = 49.9 bits (119), Expect = 2e-05 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 10/75 (13%) Query: 64 EYAEYVERLLKTERPP-------KLSRAALETLAIIAYRQPITRAEIEEIRG---VNSDG 113 ++ +++ + E+ L+ A + TL IA QPI + ++RG Sbjct: 12 KFQDFLATYAQLEKNQHVIKGAIPLNTAEVHTLVSIAQNQPINLVGLSKVRGISRSAVTQ 71 Query: 114 AIKTLLERGLIEEVG 128 + L +GL+ +V Sbjct: 72 MVSRLESKGLLIKVP 86 >gi|68183625|ref|ZP_00556599.1| hypothetical protein JannDRAFT_0530 [Jannaschia sp. CCS1] Length = 99 Score = 49.5 bits (118), Expect = 3e-05 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LF + + E LA ++ EL VAGG+ Sbjct: 2 GQIEAVLFASASSVGREDLACVVGQEASVEALIYDIWAEFVGRR---YELARVAGGWMFY 58 Query: 61 TKPEYA 66 T+ ++A Sbjct: 59 TRTQFA 64 >MarR_Q8DV74_36-105_PF01047.12 Length = 70 Score = 45.6 bits (108), Expect = 3e-04 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 81 LSRAALETLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVG 128 L+ A + TL IA QPI + ++RG + L +GL+ +V Sbjct: 1 LNTAEVHTLVSIAQNQPINLVGLSKVRGISRSAVTQMVSRLESKGLLIKVP 51 >gi|50978532|dbj|BAD34978.1| putative transcriptional repressor [Arthrobacter globiformis] Length = 370 Score = 39.9 bits (93), Expect = 0.020 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEVG 128 + L+R+A+ LA I P +RA++ GV+ + L+ GL+ E+ Sbjct: 1 MAHPNPRTDLTRSAM--LAHIGSNGPTSRADLARELGVSPALVTQHTRELIADGLLVELD 58 Query: 129 RRDVP-GRPALY 139 R GRPA Sbjct: 59 HRPSQGGRPARL 70 >gi|56461561|ref|YP_156842.1| Primosomal protein A (replication factor Y), superfamily II helicase [Idiomarina loihiensis L2TR] Length = 736 Score = 39.9 bits (93), Expect = 0.023 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 88 TLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDV 132 LA + Y QP+ R+++ +I GV S ++TL ++G IE + Sbjct: 147 VLAALKY-QPLRRSDLTDI-GVTS-AVLRTLQDKGWIEVREQAPT 188 >gi|38234449|ref|NP_940216.1| Putative DNA-biding protein [Corynebacterium diphtheriae NCTC 13129] Length = 221 Score = 39.5 bits (92), Expect = 0.026 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Query: 70 ERLLKTERPPK--LSRAALETLAIIAYRQP-ITRAEIEEIRG---VNSDGAIKTLLERGL 123 E+ + + L+ A IA P I+ +I + G S IKTL G Sbjct: 3 EKTMGPRQSRPGILTPAQERVAQAIARLGPEISLTDISRMVGGHPNASRQHIKTLENSGY 62 Query: 124 IEEVGRRDVPGRPA-LYGTTDEFLDYF 149 I +R GRPA LY T E L Sbjct: 63 ISATQKRGAAGRPAQLYSITPEGLRAL 89 >gi|55232751|gb|AAV48170.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 255 Score = 39.5 bits (92), Expect = 0.032 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 87 ETLAIIAYRQP-ITRAEIEEIRGVNS---DGAIKTLLERGLIEEVGRRDVPGRPALYGTT 142 L IA RQP +++ EI + GV S I+ L++ GL+E+ GR Y T Sbjct: 15 RVLVEIAERQPAVSQGEIADAVGVTSQAVSEYIRELVDDGLVEKEGRSR-------YRVT 67 Query: 143 DE 144 E Sbjct: 68 KE 69 >gi|51893891|ref|YP_076582.1| transcriptional repressor [Symbiobacterium thermophilum IAM 14863] Length = 391 Score = 37.6 bits (87), Expect = 0.11 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGR-RDVPG 134 +L+R A L+ I R PI+R E+ + G+ ++ LL+ GL+EE G + G Sbjct: 11 KQLNRQA--VLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEKGLGQSSGG 68 Query: 135 RP 136 RP Sbjct: 69 RP 70 >gi|1591264|gb|AAB98552.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 261 Score = 37.6 bits (87), Expect = 0.11 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 16/81 (19%) Query: 79 PKLSRAALETLAIIAYRQP-ITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGRRDVPG 134 K + + L+ I +QP I + EI E G+ I+ L++ G ++ GR + Sbjct: 2 KKRNITEFQVLSEIIRKQPHIKQKEIAENLGITVQAVSEHIRNLVKEGYVKSRGRGE--- 58 Query: 135 RPALYGTTDEFLDYFGLKSLD 155 Y T++ GL+ L Sbjct: 59 ----YVVTEK-----GLRKLK 70 >gi|48849841|ref|ZP_00304084.1| COG1846: Transcriptional regulators [Novosphingobium aromaticivorans DSM 12444] Length = 146 Score = 37.6 bits (87), Expect = 0.11 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%) Query: 56 GYRLQ--TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVN 110 GY+L+ + A+ L L A + TL +I+ ++ E+ + I+ N Sbjct: 12 GYQLRRASAVMMADLARELADL----DLRPAEVTTLLVISENPECSQTEVGQVLAIKRAN 67 Query: 111 SDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDE 144 I L++RGL+E RR + GR TD+ Sbjct: 68 MVPIISRLMDRGLVE---RRRLDGRSHALTLTDQ 98 >gi|4980601|gb|AAD35204.1| transcriptional regulator, XylR-related [Thermotoga maritima MSB8] Length = 378 Score = 37.6 bits (87), Expect = 0.12 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Query: 88 TLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGR--RDVPGR 135 L +I PI+R++I E+ G + K L++ G I E+G ++ PGR Sbjct: 16 ILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGKNSPGR 68 >gi|62179273|ref|YP_215690.1| transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 406 Score = 37.2 bits (86), Expect = 0.13 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 79 PKLSRAALETLAIIAYRQPITRAEI---EEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I PI+R +I ++ + + L+ERGLI+EV ++ G Sbjct: 16 KQLNSAAVYRL--IDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 Query: 135 -RPALYGT-TDEFL 146 R T T F Sbjct: 74 RRAISIVTETRNFH 87 >gi|59711413|ref|YP_204189.1| N-acetylglucosamine repressor [Vibrio fischeri ES114] Length = 404 Score = 37.2 bits (86), Expect = 0.13 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 79 PKLSRAALETLAIIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I + PI+R A++ ++ + + LLERGLI+EV ++ G Sbjct: 13 KQLNSAAVYRL--IDQKGPISRIQIADVSQLAPASVTKITRQLLERGLIKEVAQQASTGG 70 Query: 135 -RPALYGT-TDEFLD 147 R T T F Sbjct: 71 RRAISLTTETSPFHS 85 >gi|11497829|ref|NP_069051.1| hypothetical protein AF0213 [Archaeoglobus fulgidus DSM 4304] Length = 259 Score = 37.2 bits (86), Expect = 0.15 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 50 LVEVAGGYRLQ-----TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIE 104 L+E+ Y T E E ++RL + A +A R T +EI Sbjct: 6 LIEIKKVYNFVVTFVVTMDEIIEVLKRLGFRD-------YEARVYATLATRGEATASEIH 58 Query: 105 EIRGV---NSDGAIKTLLERGLIEEVGRRDVPGRPA 137 + GV +++L +RG+IE + R Sbjct: 59 RVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAI 94 >gi|18976604|ref|NP_577961.1| transcription regulatory protein, arsR family [Pyrococcus furiosus DSM 3638] Length = 187 Score = 36.4 bits (84), Expect = 0.23 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Query: 74 KTERPPKLSRAA-LETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEV-- 127 ++ LS ++ L ++ Y P+T +EI + G + IK L E GL+EEV Sbjct: 11 DPKQIKALSDPTRVKILELLRYH-PMTVSEISRVIGKDKSTIYRHIKALEEAGLVEEVEK 69 Query: 128 -GRRDVPGRPALYGTTDEFLDYFG 150 G V GR AL FL G Sbjct: 70 IGNETVYGRTALI-----FLVRIG 88 >gi|65316950|ref|ZP_00389909.1| COG2345: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 188 Score = 36.4 bits (84), Expect = 0.23 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 101 AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRP-ALYGTTDE----F---LDYFGLK 152 AEI EI + + L + G I R GRP LYG +++ F F + Sbjct: 27 AEILEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRPTYLYGLSEKGEDTFPKEYKQFAID 86 Query: 153 SLDDL 157 L+DL Sbjct: 87 MLEDL 91 >gi|6002233|emb|CAB56677.1| putative MarR-family regulatory protein [Streptomyces coelicolor A3(2)] Length = 148 Score = 36.0 bits (83), Expect = 0.28 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 4/87 (4%) Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA---IKT 117 + + R+LK L+ LA ++ R IT +E+ I GV + Sbjct: 18 VRAVISRLRRRILKASEVEDLTLGQSSVLARLSDRGSITASELAAIEGVRHQSMTATVTA 77 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDE 144 L GL+E GR L T E Sbjct: 78 LASMGLVERRP-DPDDGRRLLITLTPE 103 >gi|74018911|ref|ZP_00689530.1| Filamentation induced by cAMP protein Fic [Burkholderia ambifaria AMMD] Length = 424 Score = 36.0 bits (83), Expect = 0.28 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLE 120 E+ + R K+ P+ + A+E +A R+ +TRAE ++ GV+ + +++L++ Sbjct: 332 EFNPWTIRSEKSVIKPEAAALAMEF---VALRRAVTRAEFSQMLGVSDVLARRIVRSLID 388 Query: 121 RGLIEEVGRR 130 GL+ R Sbjct: 389 FGLLTSPSHR 398 >gi|67985648|gb|EAM73502.1| regulatory protein, MarR [Kineococcus radiotolerans SRS30216] Length = 161 Score = 36.0 bits (83), Expect = 0.29 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 70 ERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT---LLERGLIEE 126 RL + +LS A LA + + P T E+ E V +T L+E+GL+E Sbjct: 41 RRLRAEKSVDELSDAQFSVLAHLFTQGPRTPGELAEAEHVRPPSMTRTIAGLVEQGLVER 100 Query: 127 VGRRDVPGRPALYGTTD 143 G GR L + Sbjct: 101 AGH-PDDGRQVLITVSP 116 >gi|74311204|ref|YP_309623.1| transcriptional repressor of nag (N-acetylglucosamine) operon [Shigella sonnei Ss046] Length = 406 Score = 36.0 bits (83), Expect = 0.34 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 79 PKLSRAALETLAIIAYRQPITRAEI---EEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I PI+R +I ++ + + L+ERGLI+EV ++ G Sbjct: 16 KQLNSAAVYRL--IDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 Query: 135 -RPALYGT-TDEFL 146 R T T F Sbjct: 74 RRAISIVTETRNFH 87 >gi|68262921|emb|CAI36409.1| putative transcriptional regulator (MarR family) [Corynebacterium jeikeium K411] Length = 180 Score = 35.6 bits (82), Expect = 0.37 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 64 EYAEYVERLLKTERPP-KLSRAALETLAIIAYRQPITRAE---IEEIRGVNSDGAIKTLL 119 ++ RL++ ++S++ +E L I+ ++ + +R N ++ L+ Sbjct: 40 DFLSATRRLMERPNQSLEISQSEIEVLQFISQHPGCGVSDVARLRFLRASNVSATVRRLI 99 Query: 120 ERGLIE 125 GLI Sbjct: 100 NGGLIR 105 >gi|6460206|gb|AAF11936.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 403 Score = 35.6 bits (82), Expect = 0.40 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 13/91 (14%) Query: 80 KLSRAALETLA---IIAYRQPITRAEIEEIRGVNSDGAIKTLLER----GLI-EEVGRRD 131 L A LE LA +I Q + + +++R I+ L+++ G I +E G D Sbjct: 51 DLFDAILEALAERNMIPEEQLLEALQADDVRETALGQQIERLMDKLQQDGFIRKEFGDED 110 Query: 132 VPGRP-----ALYGTTDEFLDYFGLKSLDDL 157 G A + TD+ +D+ G KSL DL Sbjct: 111 GQGGAGNPGEATFQLTDKSIDFLGYKSLRDL 141 >Arginosuc_synth_ASSY_11-400_PF00764.8 Length = 390 Score = 35.6 bits (82), Expect = 0.43 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 19/69 (27%) Query: 86 LETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEF 145 +ETL IA + + R +I E R V I+ G + PG L F Sbjct: 236 METLNTIAGKHGVGRVDIVENRLVG-------------IKSRGVYETPGGTIL------F 276 Query: 146 LDYFGLKSL 154 L + L+S+ Sbjct: 277 LAHRDLESI 285 >gi|24216865|ref|NP_714346.1| argininosuccinate synthase [Leptospira interrogans serovar Lai str. 56601] Length = 403 Score = 35.6 bits (82), Expect = 0.43 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 19/69 (27%) Query: 86 LETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEF 145 +ETL IA + + R +I E R V I+ G + PG L F Sbjct: 246 METLNTIAGKHGVGRVDIVENRLVG-------------IKSRGVYETPGGTIL------F 286 Query: 146 LDYFGLKSL 154 L + L+S+ Sbjct: 287 LAHRDLESI 295 >gi|47223488|emb|CAF97975.1| unnamed protein product [Tetraodon nigroviridis] Length = 612 Score = 35.6 bits (82), Expect = 0.45 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 66 AEYVERLLKTERPPKL--SRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGL 123 A+ + P L A LE L I+ Q IT+ I+E RGV + + L Sbjct: 157 ADLLAVNADGNMPYDLCEDEATLELLEIVMAEQGITQDRIDEFRGVKEAAMLADIQA--L 214 Query: 124 IEEVG---RRDVPGRPAL 138 ++ G RD G L Sbjct: 215 VQSGGDLNARDDNGATLL 232 >gi|23494670|dbj|BAC19636.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 153 Score = 35.2 bits (81), Expect = 0.47 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP--ITR-AEIEEIRGVNSDGAIK 116 + +P + + LS L L+ +A P I+R AE+E+IR + A+ Sbjct: 12 RVRPALTKLYVLYFRRSANSDLSGPQLTILSRLAEHGPSRISRIAELEDIRMPTASNALH 71 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDE 144 L + L+E + R R TD Sbjct: 72 HLEQLKLVERI-RDTKDRRGVQVQLTDH 98 >gi|17431715|emb|CAD18392.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 186 Score = 35.2 bits (81), Expect = 0.48 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPP 27 I ALL+ + EP++ +++AE L Sbjct: 28 GQIYALLYASREPINADEIAEALGFSR 54 >gi|71366923|ref|ZP_00657458.1| conserved hypothetical protein [Nocardioides sp. JS614] Length = 254 Score = 35.2 bits (81), Expect = 0.50 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 96 QPITRAEIEEIRG---VNSDGAIKTLLERGLIEE-VGRRDVPGRPALY 139 QP+T A + I G + L+ RGL+ GR GRPA Sbjct: 67 QPLTLAALARITGLHPNTVREHLDALVRRGLVRRLAGRPQGRGRPAYL 114 >gi|1924925|emb|CAA96093.1| xyl repressor [Bacillus megaterium] Length = 388 Score = 35.2 bits (81), Expect = 0.50 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 92 IAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG--RPALYG 140 I P++RA + EI G + TLLE+ I E+G G RP + Sbjct: 24 ILKNSPVSRATLSEITGLNKSTVSSQVNTLLEKDFIFEIGAGQSRGGRRPVMLV 77 >gi|68189513|gb|EAN04179.1| ROK [Mesorhizobium sp. BNC1] Length = 393 Score = 35.2 bits (81), Expect = 0.52 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 82 SRAALETLAIIAY--RQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRD-VPGR 135 SR +++ I+A + ++RAE+ + G + L E G IE VGR GR Sbjct: 10 SRKQIQSAVILAVMDNEQVSRAELARLSGLSKQTMSDVFRDLEEDGWIEVVGRTSGTVGR 69 Query: 136 -PALYGTTDEFLDYFG 150 A+Y + FG Sbjct: 70 SAAVYELSPNRALLFG 85 >TrmB_O30026_30-97_PF01978.8 Length = 68 Score = 35.2 bits (81), Expect = 0.59 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 85 ALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGRRDVPGRPA 137 A +A R T +EI + GV +++L +RG+IE + R Sbjct: 10 EARVYATLATRGEATASEIHRVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAI 65 >gi|68174065|ref|ZP_00547336.1| regulatory protein, MarR [Frankia sp. CcI3] Length = 308 Score = 34.9 bits (80), Expect = 0.63 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 69 VERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS---DGAIKTLLERGLIE 125 + R ++ ER +L+ LA + P+T EI V I L GL+E Sbjct: 187 LSRRMRQERSSRLTPTQTSALATLERHGPMTLGEIAAHERVQPPSMTRVIAHLAVTGLVE 246 Query: 126 EVGRRDVPGRPALYGTTD 143 GR + T+ Sbjct: 247 RRPH-PTDGRQVIAEVTE 263 >gi|68388023|ref|XP_692950.1| PREDICTED: similar to beta-spectrin [Danio rerio] Length = 2481 Score = 34.9 bits (80), Expect = 0.63 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 49 ELVEVAGGYRLQT-KPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEE 105 +L E A +R T + ++E +L+ + +++E L Y Q I RAEIE Sbjct: 2041 QLEETADKFRFFTMVRDLMAWMESILQQIETQEKPRDVSSVELLM--KYHQGI-RAEIET 2097 Query: 106 IRGVNSDGAI---KTLLERG 122 RG + + + LLER Sbjct: 2098 -RGPKFNQCVQLGQALLERK 2116 >gi|67675838|ref|ZP_00472592.1| ROK [Chromohalobacter salexigens DSM 3043] Length = 396 Score = 34.9 bits (80), Expect = 0.64 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 8/67 (11%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIE---EIRGVNSDGAIKTLLERGLIEEVGRRD-VPG 134 KL+R+++ LA + TRA+I ++ G ++ LLERG + E + G Sbjct: 17 KKLNRSSI--LATVRRYPGATRADIASRTQLTKATVGGVVQALLERGWLREGELQPRGGG 74 Query: 135 RP--ALY 139 RP ALY Sbjct: 75 RPGRALY 81 >MarR_Q8XQI4_23-83_PF01047.12 Length = 61 Score = 34.9 bits (80), Expect = 0.71 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPP 27 I ALL+ + EP++ +++AE L Sbjct: 6 GQIYALLYASREPINADEIAEALGFSR 32 >gi|51594904|ref|YP_069095.1| putative transcriptional repressor [Yersinia pseudotuberculosis IP 32953] Length = 337 Score = 34.9 bits (80), Expect = 0.71 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%) Query: 82 SRAALETLAIIA---YRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPAL 138 S + E LA +A Y +T+ +I E+ G+ + LLE+G V R + R Sbjct: 31 SMSEEELLARVAWFYYHDGLTQGDIGELLGLA-RLKVSRLLEKGRQSGVIRVQINSR--- 86 Query: 139 YG----TTDEFLDYFGLKSLDDLPPL 160 Y + +FGLK + LP L Sbjct: 87 YEGCLELENTLQQHFGLKHIRILPSL 112 >gi|62423215|ref|ZP_00378384.1| COG1846: Transcriptional regulators [Brevibacterium linens BL2] Length = 149 Score = 34.9 bits (80), Expect = 0.71 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 77 RPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVNSDGAIKTLLERGLI 124 R L+ A E LA I QPIT+ ++ + G + L GLI Sbjct: 30 RQFDLTLAQFEALAHIRNFQPITQTDLARGLTVTGGGISRMLSRLESEGLI 80 >RNA_pol_Rpb2_6_Q8TXI7_159-536_PF00562.15 Length = 378 Score = 34.9 bits (80), Expect = 0.74 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Query: 105 EIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTT--DEFLDYFGLKSLDDLP 158 E+RG S+ A K L E GL EVG R V GR + G T FL+ F ++LP Sbjct: 131 EVRGYRSEDAYKHLGEDGL-AEVGER-VEGRDVIIGKTSPPRFLEEF---RPEELP 181 >gi|20094124|ref|NP_613971.1| DNA-directed RNA polymerase second-largest subunit, the N-terminal part [Methanopyrus kandleri AV19] Length = 640 Score = 34.9 bits (80), Expect = 0.74 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Query: 105 EIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTT--DEFLDYFGLKSLDDLP 158 E+RG S+ A K L E GL EVG R V GR + G T FL+ F ++LP Sbjct: 289 EVRGYRSEDAYKHLGEDGL-AEVGER-VEGRDVIIGKTSPPRFLEEF---RPEELP 339 >gi|10173314|dbj|BAB04419.1| transcriptional repressor of the xylose operon [Bacillus halodurans C-125] Length = 388 Score = 34.5 bits (79), Expect = 0.80 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG- 134 K++R A+ L I +Q I+R+++ +I V + +LLE LI E + G Sbjct: 10 KKMNRRAI--LEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSGG 67 Query: 135 -RPALYGTTDEFLDYFGLK 152 +P L + G+ Sbjct: 68 RKPILLTLNENAAFTLGID 86 >gi|30248277|ref|NP_840347.1| Site-specific recombinase [Nitrosomonas europaea ATCC 19718] Length = 210 Score = 34.5 bits (79), Expect = 0.97 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP-ITRAEIEEIRGVNSDGAIKTL 118 +TK +R RP KLSR + + + RQP +T +I + GV+S + L Sbjct: 136 RTKAGMEAARQRGAHLGRPKKLSRGQIIRMQNLLQRQPDMTPVQIADQFGVSSRTIYRAL 195 Query: 119 LERGLIEE 126 + I+E Sbjct: 196 SKYSTIKE 203 >gi|46203457|ref|ZP_00051497.2| COG1846: Transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 157 Score = 34.5 bits (79), Expect = 0.98 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 81 LSRAALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGRRDVPG--R 135 LS + L+ ++ R+ +T+ E+ V N G + L+E GL+E RR +PG R Sbjct: 44 LSIPQFDVLSTLSEREGLTQQELAARLYVTKGNVSGLVDRLVEAGLVE---RRAIPGDRR 100 Query: 136 PALYGTTDE 144 T E Sbjct: 101 SHALHLTPE 109 >gi|18978434|ref|NP_579791.1| hypothetical protein PF2062 [Pyrococcus furiosus DSM 3638] Length = 94 Score = 34.5 bits (79), Expect = 0.99 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 78 PPKLSRAALETLAIIAYRQPITRAEIEEIRG-VNSDGAIKTLLERGLIEEVGRRDVPGRP 136 +L++ + L I +T+ ++ EI G V + IK L ++GLIE R GR Sbjct: 33 KVELTKLERDVLEFILRNGEVTQKKLAEIFGRVKTCRIIKNLEKKGLIE----RKKNGRT 88 Query: 137 AL 138 + Sbjct: 89 YI 90 Searching..................................................done Results from round 4 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobac... 204 5e-52 gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 28... 200 1e-50 gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanth... 199 2e-50 gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation ... 199 2e-50 DUF387_SCPB_22-181_PF04079.5 199 2e-50 gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HT... 199 2e-50 gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanth... 198 3e-50 DUF387_Q5KXL1_19-179_PF04079.5 198 4e-50 gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [R... 198 4e-50 gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanth... 198 5e-50 gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR... 197 6e-50 gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [D... 197 1e-49 gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia sola... 196 2e-49 gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 28... 195 3e-49 DUF387_SCPB_8-168_PF04079.5 195 3e-49 gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 28... 195 4e-49 gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitros... 195 4e-49 DUF387_Q83CP9_8-169_PF04079.5 195 4e-49 gi|53803499|ref|YP_114626.1| segregation and condensation protei... 195 4e-49 gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR... 194 5e-49 gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptiona... 194 5e-49 gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptiona... 194 7e-49 gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein pr... 193 8e-49 gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pse... 193 9e-49 gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptiona... 193 1e-48 DUF387_Q8XZW0_8-167_PF04079.5 193 1e-48 DUF387_Q7X2Z5_57-216_PF04079.5 193 1e-48 gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncul... 193 1e-48 gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] 193 1e-48 DUF387_Q88EG7_33-194_PF04079.5 193 2e-48 gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00... 193 2e-48 DUF387_Q82TY6_23-182_PF04079.5 193 2e-48 gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator... 193 2e-48 DUF387_Q885L8_11-172_PF04079.5 192 2e-48 gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptiona... 192 2e-48 gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 28... 192 2e-48 gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromo... 192 2e-48 gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 28... 192 3e-48 gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 28... 192 3e-48 DUF387_Q605S2_5-166_PF04079.5 192 4e-48 gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbi... 191 4e-48 gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 28... 191 5e-48 gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylell... 191 6e-48 DUF387_Q9HZ43_11-172_PF04079.5 191 6e-48 gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Baci... 190 7e-48 gi|70728992|ref|YP_258726.1| segregation and condensation protei... 190 7e-48 gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation ... 190 8e-48 gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clos... 190 9e-48 gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR... 190 9e-48 DUF387_Q7NSN3_12-171_PF04079.5 190 9e-48 gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptiona... 190 1e-47 DUF387_Q63TP4_8-167_PF04079.5 190 1e-47 DUF387_SCPB_5-166_PF04079.5 190 1e-47 DUF387_SCPB_18-177_PF04079.5 190 1e-47 gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptiona... 189 1e-47 DUF387_Q6SI35_7-166_PF04079.5 189 2e-47 DUF387_SCPB_20-180_PF04079.5 189 2e-47 gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 28... 189 2e-47 gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptiona... 188 3e-47 gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 28... 188 3e-47 DUF387_Q8PK59_20-181_PF04079.5 188 3e-47 gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus lic... 188 4e-47 gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptiona... 188 5e-47 gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 28... 188 5e-47 gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 28... 188 5e-47 gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceano... 187 6e-47 DUF387_SCPB_5-166_PF04079.5 187 6e-47 DUF387_Q9PAP3_17-178_PF04079.5 187 7e-47 gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Strep... 187 8e-47 gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregatio... 187 8e-47 gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Borde... 187 1e-46 DUF387_Q67NF6_8-166_PF04079.5 186 1e-46 DUF387_SCPB_10-169_PF04079.5 186 1e-46 gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 28... 186 1e-46 gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 28... 186 2e-46 gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator... 185 2e-46 gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptiona... 185 3e-46 DUF387_SCPB_8-168_PF04079.5 185 3e-46 gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation ... 185 4e-46 DUF387_Q5M621_6-167_PF04079.5 185 4e-46 gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewan... 185 5e-46 gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legio... 185 5e-46 gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Strep... 184 5e-46 gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Str... 184 5e-46 DUF387_Q7W9A9_10-171_PF04079.5 184 7e-46 gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clos... 184 7e-46 gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptiona... 183 8e-46 gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 28... 183 9e-46 DUF387_Q5QX76_8-169_PF04079.5 183 1e-45 DUF387_Q73PC5_1-159_PF04079.5 183 1e-45 gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Strept... 183 1e-45 gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 28... 183 1e-45 DUF387_Q65HX2_10-169_PF04079.5 183 1e-45 DUF387_Q7ZAJ6_10-171_PF04079.5 182 2e-45 DUF387_SCPB_5-166_PF04079.5 182 2e-45 DUF387_Q5ZVJ4_11-172_PF04079.5 182 2e-45 gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptiona... 182 2e-45 gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] 182 3e-45 gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 28... 182 3e-45 gi|42526386|ref|NP_971484.1| transcriptional regulator, putative... 182 4e-45 gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus... 181 4e-45 gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [... 181 5e-45 gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xant... 181 6e-45 gi|20807774|ref|NP_622945.1| predicted transcriptional regulator... 181 7e-45 gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 28... 181 7e-45 DUF387_SCPB_5-164_PF04079.5 180 1e-44 DUF387_Q5WH04_9-169_PF04079.5 180 1e-44 gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 28... 180 1e-44 DUF387_Q7ZAN0_10-169_PF04079.5 180 1e-44 gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [K... 179 2e-44 gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Lept... 179 2e-44 gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesor... 179 2e-44 DUF387_SCPB_5-166_PF04079.5 179 2e-44 gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 28... 179 2e-44 gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptiona... 179 2e-44 gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 28... 179 2e-44 gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus ... 179 2e-44 gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 28... 179 2e-44 gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 28... 178 3e-44 gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lacto... 178 3e-44 DUF387_SCPB_6-167_PF04079.5 178 3e-44 gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactob... 178 3e-44 gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Strep... 178 3e-44 DUF387_Q98LC4_45-200_PF04079.5 178 3e-44 gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptiona... 178 4e-44 gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 28... 178 5e-44 DUF387_Q5LQJ0_23-178_PF04079.5 178 6e-44 DUF387_Q8KF54_10-171_PF04079.5 178 6e-44 gi|56679084|gb|AAV95750.1| segregation and condensation protein ... 177 8e-44 gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptiona... 177 8e-44 gi|56478941|ref|YP_160530.1| putative transcriptional regulator,... 177 8e-44 DUF387_SCPB_5-166_PF04079.5 176 1e-43 gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptiona... 176 1e-43 gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Para... 176 1e-43 gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptiona... 176 1e-43 gi|28378542|ref|NP_785434.1| transcription regulator (putative) ... 176 1e-43 gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chloro... 176 1e-43 gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR... 176 2e-43 gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 28... 176 2e-43 DUF387_Q84FE4_81-236_PF04079.5 176 2e-43 gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 28... 176 2e-43 gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 28... 176 2e-43 DUF387_SCPB_5-166_PF04079.5 175 2e-43 gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [E... 175 3e-43 DUF387_Q5NZ85_11-170_PF04079.5 175 3e-43 DUF387_SCPB_5-166_PF04079.5 175 4e-43 gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Strep... 175 5e-43 gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 28... 175 5e-43 gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] 174 5e-43 gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 28... 174 7e-43 DUF387_Q5TXY6_13-173_PF04079.5 174 8e-43 gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptiona... 173 9e-43 DUF387_Q9S231_28-186_PF04079.5 173 1e-42 gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycoba... 173 1e-42 DUF387_O05669_30-188_PF04079.5 173 1e-42 DUF387_SCPB_8-169_PF04079.5 173 1e-42 gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptiona... 173 1e-42 gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae... 173 1e-42 gi|61102014|ref|ZP_00377468.1| segregation and condensation prot... 173 2e-42 gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [The... 173 2e-42 gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Aci... 172 2e-42 DUF387_SCPB_8-168_PF04079.5 172 2e-42 gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptiona... 172 2e-42 gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lacto... 172 2e-42 DUF387_Q5SK60_9-166_PF04079.5 172 2e-42 DUF387_Q74C44_6-165_PF04079.5 172 2e-42 DUF387_Q5FKG0_6-167_PF04079.5 172 3e-42 gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycob... 172 3e-42 DUF387_Q6FDU6_20-179_PF04079.5 171 4e-42 gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00... 171 5e-42 gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Cory... 171 6e-42 DUF387_Q6N5X0_36-191_PF04079.5 171 6e-42 gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 28... 171 6e-42 DUF387_Q89KZ6_34-189_PF04079.5 170 7e-42 gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 28... 170 7e-42 DUF387_O33209_30-188_PF04079.5 170 9e-42 DUF387_Q7ZAN2_15-173_PF04079.5 170 9e-42 DUF387_Q6MER5_69-232_PF04079.5 170 1e-41 DUF387_Q740D9_34-192_PF04079.5 169 2e-41 gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifido... 169 2e-41 gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 28... 169 3e-41 gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 28... 168 4e-41 DUF387_SCPB_106-268_PF04079.5 168 4e-41 gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Myco... 168 4e-41 DUF387_Q5YY85_27-185_PF04079.5 168 5e-41 gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycopl... 168 6e-41 gi|73662567|ref|YP_301348.1| putative transcriptional regulator ... 167 8e-41 DUF387_SCPB_24-186_PF04079.5 165 3e-40 DUF387_Q8G4K8_52-216_PF04079.5 165 4e-40 gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psy... 165 4e-40 gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregatio... 165 4e-40 gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesor... 165 5e-40 gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdello... 164 6e-40 DUF387_Q981I4_42-200_PF04079.5 163 9e-40 gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptiona... 163 1e-39 DUF387_Q8YGS3_23-178_PF04079.5 163 1e-39 DUF387_SCPB_15-176_PF04079.5 163 1e-39 gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Myc... 163 1e-39 DUF387_Q98A15_35-195_PF04079.5 163 1e-39 gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesor... 163 1e-39 gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodo... 163 1e-39 DUF387_Q98P19_35-194_PF04079.5 163 2e-39 DUF387_SCPB_4-165_PF04079.5 163 2e-39 gi|47459311|ref|YP_016173.1| predicted transcriptional regulator... 163 2e-39 gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesor... 163 2e-39 gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisser... 162 2e-39 gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 28... 162 2e-39 gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 28... 162 2e-39 gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 28... 162 3e-39 gi|68263552|emb|CAI37040.1| segregation and condensation protein... 162 3e-39 gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Noca... 162 3e-39 gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Brady... 162 3e-39 gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putat... 161 4e-39 gi|19552641|ref|NP_600643.1| predicted transcriptional regulator... 161 5e-39 gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Meso... 161 6e-39 DUF387_Q6MLN0_104-265_PF04079.5 161 7e-39 gi|75675995|ref|YP_318416.1| chromosome segregation and condensa... 160 8e-39 gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR... 160 8e-39 DUF387_Q8KGW4_35-195_PF04079.5 160 1e-38 DUF387_Q6LBD4_2-160_PF04079.5 160 1e-38 gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphy... 160 2e-38 DUF387_SCPB_5-157_PF04079.5 160 2e-38 DUF387_Q9F5B4_43-202_PF04079.5 160 2e-38 gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphy... 160 2e-38 gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptiona... 159 2e-38 gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] 159 2e-38 DUF387_Q8NQK9_9-167_PF04079.5 159 2e-38 DUF387_O52287_40-199_PF04079.5 159 2e-38 gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [M... 159 2e-38 gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] 159 2e-38 gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [M... 158 3e-38 gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Olig... 158 3e-38 gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [A... 158 4e-38 gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leif... 158 5e-38 gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Coryn... 158 5e-38 DUF387_Q6AGG0_22-189_PF04079.5 157 6e-38 DUF387_Q6NHE4_7-170_PF04079.5 157 6e-38 gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [M... 157 7e-38 DUF387_SCPB_23-185_PF04079.5 157 8e-38 DUF387_Q7UE48_165-325_PF04079.5 157 1e-37 gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesor... 157 1e-37 gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Trepon... 156 1e-37 gi|71083666|ref|YP_266386.1| segregation and condensation protei... 156 1e-37 DUF387_Q981J7_40-198_PF04079.5 156 2e-37 DUF387_O83471_18-180_PF04079.5 155 3e-37 gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 28... 154 6e-37 gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrob... 154 8e-37 DUF387_SCPB_7-168_PF04079.5 154 8e-37 gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycop... 154 8e-37 DUF387_Q92Q27_30-185_PF04079.5 153 1e-36 DUF387_Q8UEP8_40-195_PF04079.5 152 2e-36 DUF387_Q7P2S1_5-163_PF04079.5 152 3e-36 gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [F... 152 3e-36 gi|57284636|gb|AAW36730.1| segregation and condensation protein ... 152 3e-36 gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sino... 152 3e-36 gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureapla... 151 5e-36 gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulob... 151 7e-36 DUF387_SCPB_188-349_PF04079.5 150 1e-35 DUF387_Q9A6S9_11-166_PF04079.5 149 2e-35 gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methan... 148 4e-35 gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycop... 148 4e-35 gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [M... 148 5e-35 DUF387_SCPB_5-157_PF04079.5 148 5e-35 DUF387_Q5ZZQ3_4-166_PF04079.5 148 6e-35 gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methan... 147 1e-34 gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusob... 146 2e-34 gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 28... 146 2e-34 gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] 146 2e-34 gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Myc... 146 2e-34 DUF387_Q8KVW0_30-188_PF04079.5 146 2e-34 DUF387_Q8TI25_8-157_PF04079.5 145 3e-34 gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 28... 145 4e-34 DUF387_Q6MTL7_7-171_PF04079.5 144 7e-34 gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Myco... 144 7e-34 DUF387_O28692_5-154_PF04079.5 143 2e-33 gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 28... 142 2e-33 gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 28... 142 3e-33 gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archae... 141 4e-33 gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinoc... 137 8e-32 gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 28... 136 2e-31 gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 28... 135 3e-31 DUF387_Q9RTA4_13-171_PF04079.5 135 4e-31 gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 28... 133 1e-30 gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (... 133 1e-30 gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyroco... 133 2e-30 gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptiona... 132 3e-30 gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synec... 132 3e-30 DUF387_P74610_5-159_PF04079.5 132 3e-30 gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 28... 132 3e-30 gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] 132 3e-30 DUF387_Q9V1Y8_8-160_PF04079.5 132 4e-30 gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Proc... 131 6e-30 gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptiona... 130 1e-29 DUF387_Q8YLY0_7-157_PF04079.5 129 2e-29 DUF387_Q7V7Q5_20-168_PF04079.5 129 3e-29 gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Syn... 128 4e-29 gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeo... 128 5e-29 DUF387_Q7NJH4_8-156_PF04079.5 127 1e-28 DUF387_Q5N339_7-162_PF04079.5 126 1e-28 gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyroco... 126 3e-28 gi|57160221|dbj|BAD86151.1| predicted transcription regulator, Y... 125 4e-28 gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Syne... 124 8e-28 DUF387_Q7U6P4_8-162_PF04079.5 124 9e-28 DUF387_Q5JDN0_8-160_PF04079.5 123 2e-27 DUF387_Q6F0R6_7-169_PF04079.5 123 2e-27 gi|50365366|ref|YP_053791.1| chromosomal segregation/condensatio... 123 2e-27 gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator c... 121 6e-27 gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptiona... 120 9e-27 gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation ... 119 2e-26 gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluco... 119 2e-26 gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putat... 119 3e-26 DUF387_Q5FQ51_2-103_PF04079.5 118 3e-26 DUF387_Q7VC16_3-151_PF04079.5 118 5e-26 DUF387_Q7UPG2_127-292_PF04079.5 115 4e-25 gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermo... 115 4e-25 DUF387_Q7V1G4_3-155_PF04079.5 114 7e-25 gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Proch... 114 7e-25 DUF387_Q9WYW4_5-159_PF04079.5 114 7e-25 gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongat... 113 1e-24 DUF387_Q8DKL3_12-162_PF04079.5 111 5e-24 gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. ... 111 9e-24 gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisse... 106 2e-22 DUF387_Q9K079_356-484_PF04079.5 104 6e-22 DUF387_Q6L0G6_6-153_PF04079.5 98 6e-20 gi|48430671|gb|AAT43536.1| thiosulfate sulfurtransferase [Picrop... 98 6e-20 gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma v... 98 7e-20 DUF387_Q97B36_13-163_PF04079.5 96 3e-19 DUF387_Q9HKK2_10-161_PF04079.5 91 1e-17 gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Ther... 91 1e-17 gi|68141196|gb|EAM94485.1| hypothetical protein FaciDRAFT_1595 [... 80 1e-14 gi|13475236|ref|NP_106800.1| hypothetical protein msr6263 [Mesor... 65 5e-10 gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptiona... 59 4e-08 gi|24379105|ref|NP_721060.1| putative transcriptional regulator ... 52 6e-06 gi|68183625|ref|ZP_00556599.1| hypothetical protein JannDRAFT_05... 50 2e-05 MarR_Q8DV74_36-105_PF01047.12 48 1e-04 Sequences not found previously or not previously below threshold: gi|50978532|dbj|BAD34978.1| putative transcriptional repressor [... 41 0.012 gi|38234449|ref|NP_940216.1| Putative DNA-biding protein [Coryne... 40 0.021 gi|56461561|ref|YP_156842.1| Primosomal protein A (replication f... 39 0.025 gi|55232751|gb|AAV48170.1| transcription regulator [Haloarcula m... 39 0.037 gi|11497829|ref|NP_069051.1| hypothetical protein AF0213 [Archae... 38 0.057 gi|48849841|ref|ZP_00304084.1| COG1846: Transcriptional regulato... 38 0.072 gi|62179273|ref|YP_215690.1| transcriptional repressor of nag (N... 38 0.080 gi|51893891|ref|YP_076582.1| transcriptional repressor [Symbioba... 38 0.083 gi|59711413|ref|YP_204189.1| N-acetylglucosamine repressor [Vibr... 38 0.085 gi|4980601|gb|AAD35204.1| transcriptional regulator, XylR-relate... 38 0.092 gi|15159185|gb|AAK89343.1| AGR_L_1535p [Agrobacterium tumefacien... 37 0.13 gi|1591264|gb|AAB98552.1| conserved hypothetical protein [Methan... 37 0.17 gi|74311204|ref|YP_309623.1| transcriptional repressor of nag (N... 36 0.21 gi|65316950|ref|ZP_00389909.1| COG2345: Predicted transcriptiona... 36 0.21 gi|74018911|ref|ZP_00689530.1| Filamentation induced by cAMP pro... 36 0.24 gi|18976604|ref|NP_577961.1| transcription regulatory protein, a... 36 0.26 gi|68262921|emb|CAI36409.1| putative transcriptional regulator (... 36 0.27 gi|17431715|emb|CAD18392.1| HYPOTHETICAL PROTEIN [Ralstonia sola... 36 0.28 gi|6002233|emb|CAB56677.1| putative MarR-family regulatory prote... 36 0.29 TrmB_O30026_30-97_PF01978.8 36 0.32 gi|6460206|gb|AAF11936.1| conserved hypothetical protein [Deinoc... 36 0.34 gi|23494670|dbj|BAC19636.1| putative transcription regulator [Co... 36 0.34 gi|69300447|ref|ZP_00622012.1| ROK [Silicibacter sp. TM1040] 36 0.36 gi|55629228|ref|XP_527859.1| PREDICTED: similar to intracellular... 36 0.38 gi|68189513|gb|EAN04179.1| ROK [Mesorhizobium sp. BNC1] 36 0.39 MarR_Q8XQI4_23-83_PF01047.12 36 0.42 gi|1924925|emb|CAA96093.1| xyl repressor [Bacillus megaterium] 36 0.43 gi|47223488|emb|CAF97975.1| unnamed protein product [Tetraodon n... 36 0.44 gi|27359779|gb|AAO08718.1| Transcriptional regulator; sugar kina... 35 0.47 gi|75829805|ref|ZP_00759097.1| COG1940: Transcriptional regulato... 35 0.47 gi|75854975|ref|ZP_00762641.1| COG1940: Transcriptional regulato... 35 0.47 gi|18977848|ref|NP_579205.1| hypothetical protein PF1476 [Pyroco... 35 0.49 gi|71366923|ref|ZP_00657458.1| conserved hypothetical protein [N... 35 0.51 gi|67985648|gb|EAM73502.1| regulatory protein, MarR [Kineococcus... 35 0.56 gi|54308222|ref|YP_129242.1| putative N-acetylglucosamine repres... 35 0.58 gi|15607877|ref|NP_215251.1| POSSIBLE TRANSCRIPTIONAL REGULATORY... 35 0.62 gi|68174065|ref|ZP_00547336.1| regulatory protein, MarR [Frankia... 35 0.70 gi|51594904|ref|YP_069095.1| putative transcriptional repressor ... 35 0.70 gi|18978434|ref|NP_579791.1| hypothetical protein PF2062 [Pyroco... 35 0.73 gi|45435778|gb|AAS61335.1| putative N-acetylglucosamine regulato... 35 0.74 gi|10173314|dbj|BAB04419.1| transcriptional repressor of the xyl... 34 0.80 gi|12720964|gb|AAK02767.1| NagC [Pasteurella multocida subsp. mu... 34 0.82 gi|67928191|ref|ZP_00521380.1| Peptidase S9, prolyl oligopeptida... 34 0.84 gi|74016335|ref|ZP_00686961.1| regulatory protein, MarR [Burkhol... 34 0.92 gi|62423215|ref|ZP_00378384.1| COG1846: Transcriptional regulato... 34 0.96 CONVERGED! >gi|56420825|ref|YP_148143.1| hypothetical protein GK2290 [Geobacillus kaustophilus HTA426] Length = 217 Score = 204 bits (521), Expect = 5e-52 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 19 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 78 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 79 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 138 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 139 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 179 >gi|68269513|ref|ZP_00575773.1| Conserved hypothetical protein 281 [Moorella thermoacetica ATCC 39073] Length = 195 Score = 200 bits (509), Expect = 1e-50 Identities = 87/160 (54%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +E LLFVAG P+S++ LA L + P GL++ VAGGY++ Sbjct: 11 AALECLLFVAGGPVSVDSLAACLGVKPGDVDELAAELQELYAREERGLQIRAVAGGYQMC 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A Y E LL+ E P LSRAALETLAIIAYRQP+TR E+E IRGV DG + TL+ Sbjct: 71 TRPEFASYCEALLRPELPA-LSRAALETLAIIAYRQPVTRTEMEYIRGVKVDGVLNTLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EVGR++ PGRP LYGTT +FL++FGLK L +LPPL Sbjct: 130 RGLVQEVGRKEAPGRPILYGTTPKFLEFFGLKDLKELPPL 169 >gi|21231652|ref|NP_637569.1| hypothetical protein XCC2213 [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 401 Score = 199 bits (508), Expect = 2e-50 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREGCTERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADLHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >gi|73541720|ref|YP_296240.1| Prokaryotic chromosome segregation and condensation protein ScpB [Ralstonia eutropha JMP134] Length = 311 Score = 199 bits (507), Expect = 2e-50 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 28 VLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALASGWRFQS 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE EY++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S IK L + Sbjct: 88 RPEMREYLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLED 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL++LD+LPPL Sbjct: 147 RSWIEVIGHRDVPGRPALYATTKAFLDDLGLRTLDELPPL 186 >DUF387_SCPB_22-181_PF04079.5 Length = 160 Score = 199 bits (507), Expect = 2e-50 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 1 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 61 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 121 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 160 >gi|15025047|gb|AAK80019.1| Predicted transciptinal regulator (HTH-type), YPUH B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] Length = 202 Score = 199 bits (507), Expect = 2e-50 Identities = 83/160 (51%), Positives = 109/160 (68%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLFV+GEPL L+Q++ +LE G++L+ + Y+L Sbjct: 22 SIIESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLV 81 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E ++YV +LLKT LS+AALETLAIIAY+QPITR +++EIRGV SD AI TL E Sbjct: 82 TKNENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAILTLQE 141 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TTDEFL F L ++D+LPP+ Sbjct: 142 KKLIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPM 181 >gi|58581785|ref|YP_200801.1| hypothetical protein XOO2162 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 424 Score = 198 bits (506), Expect = 3e-50 Identities = 86/162 (53%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L E P G+ELVEVA G+R Sbjct: 34 IIEAALLASSQPLTLAQLQGLFPEEEPAPPGSVERALELLREACAERGVELVEVASGFRF 93 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 94 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 152 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 153 EERDWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 194 >DUF387_Q5KXL1_19-179_PF04079.5 Length = 161 Score = 198 bits (505), Expect = 4e-50 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALLF AG E LSL Q+A +LE+ G++LVE+ G + L Sbjct: 1 AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALETLAIIAYRQPITRAEIEEIRGV SD ++TL+ Sbjct: 61 ATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR + GRP LYGTT EFLDYFGLK+L++LPPL Sbjct: 121 ARALIKEVGRAEGTGRPILYGTTPEFLDYFGLKTLEELPPL 161 >gi|68527518|gb|EAN50485.1| Conserved hypothetical protein 281 [Ralstonia metallidurans CH34] Length = 302 Score = 198 bits (505), Expect = 4e-50 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL + L L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLRVGDLRRLFADDVGADTIRVLLEELRNDWQQRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 +PE E+++RL E+PPK SRA +ETLAIIAYRQP+TR +IEEIRGV S +K L + Sbjct: 69 RPEMREFLDRL-NPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVVKKLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT FLD GL+SLD+LPPL Sbjct: 128 RDWIEVIGHRDVPGRPALYATTKAFLDDLGLRSLDELPPL 167 >gi|21108564|gb|AAM37170.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 412 Score = 198 bits (504), Expect = 5e-50 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 21 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 80 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 81 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 139 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 140 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 181 >gi|26991182|ref|NP_746607.1| conserved hypothetical protein TIGR00281 [Pseudomonas putida KT2440] Length = 277 Score = 197 bits (503), Expect = 6e-50 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 33 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 92 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV IKT Sbjct: 93 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 152 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 194 >gi|68170318|gb|EAM98206.1| Conserved hypothetical protein 281 [Desulfitobacterium hafniense DCB-2] Length = 196 Score = 197 bits (501), Expect = 1e-49 Identities = 80/160 (50%), Positives = 110/160 (68%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EALLFVA +PL+ E+LAE+L++ G+ L+EV GY+L Sbjct: 9 AGVEALLFVADKPLTKERLAEILQLSSEDIAEILYDLKQRYAAPASGVTLIEVNEGYKLG 68 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE + Y+E L LS AALE LAIIAY+QP+TR E++ IRGV SD ++ TL+E Sbjct: 69 TKPEMSAYIETLYHQP-AQGLSGAALEVLAIIAYKQPVTRGEVDFIRGVQSDRSLGTLVE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +GL+++VGR++ PGRP LYGTT++FL +FGLKSL++LP L Sbjct: 128 KGLVKDVGRKEGPGRPILYGTTEQFLIHFGLKSLEELPDL 167 >gi|17428299|emb|CAD14987.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 304 Score = 196 bits (500), Expect = 2e-49 Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 9 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV IK + + Sbjct: 69 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 128 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 167 >gi|71550239|ref|ZP_00670375.1| Conserved hypothetical protein 281 [Nitrosomonas eutropha C71] Length = 216 Score = 195 bits (497), Expect = 3e-49 Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L EPL++ L +L E G+ELV VAGG+R Q+ Sbjct: 26 VVEAALLTTSEPLTINDLKKLFEGNIDKKMLHESLTILDEKWCNSGIELVLVAGGWRFQS 85 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 86 KPEMQIFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQVIKTLES 144 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+R++PG+P LY TT FLD L+SL+ LP L Sbjct: 145 RGWIETIGQREIPGKPYLYATTRHFLDDLNLQSLEQLPSL 184 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 195 bits (497), Expect = 3e-49 Identities = 86/161 (53%), Positives = 110/161 (68%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E +S EQ+A++LEI GL++V+ A YR Sbjct: 1 SIIEGLLFVSGDEGISPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 61 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 121 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 161 >gi|67155816|ref|ZP_00417443.1| Conserved hypothetical protein 281 [Azotobacter vinelandii AvOP] Length = 263 Score = 195 bits (496), Expect = 4e-49 Identities = 86/162 (53%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L AG PLSLE+L EL P EL EVA GYRL Sbjct: 12 LLEAWLLAAGRPLSLERLGELFEEGERPEPACLRDALAILARSCQGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + +A +V RL + ERP + SRA LETLA+IAYRQPI+R EIEE+RGV S I+TL Sbjct: 72 QVRERFAPWVGRLWE-ERPQRYSRALLETLALIAYRQPISRGEIEEVRGVAVSSNIIRTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG R+VPGRPAL+ TT FLD+F LKSLD+LPPL Sbjct: 131 QEREWIRVVGYREVPGRPALFATTRAFLDHFNLKSLDELPPL 172 >gi|30249691|ref|NP_841761.1| hypothetical protein NE1729 [Nitrosomonas europaea ATCC 19718] Length = 220 Score = 195 bits (496), Expect = 4e-49 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 24 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 83 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 84 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 142 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 143 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 182 >DUF387_Q83CP9_8-169_PF04079.5 Length = 162 Score = 195 bits (496), Expect = 4e-49 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 2 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + + P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 62 QARPDFSPWLQRLWEKK-PARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 121 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 162 >gi|53803499|ref|YP_114626.1| segregation and condensation protein B [Methylococcus capsulatus str. Bath] Length = 201 Score = 195 bits (496), Expect = 4e-49 Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L P LEL +VA GYR Sbjct: 5 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 65 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 123 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 124 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 166 >gi|29654368|ref|NP_820060.1| conserved hypothetical protein TIGR00281 [Coxiella burnetii RSA 493] Length = 209 Score = 194 bits (495), Expect = 5e-49 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF + EPL+ E+L +L + P G++L EVA GYR Sbjct: 9 VIEAALFASAEPLTPERLQQLFDEQNPISLSEIKNLLSELKEDYRERGVDLQEVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q +P+++ +++RL + + P + SRA LETLA+I YRQPI+R EIEE+RGV S IK L Sbjct: 69 QARPDFSPWLQRLWEKK-PARYSRALLETLALIVYRQPISRGEIEEVRGVAVSSDIIKKL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+R I V RDVPG+PAL+GTT FLDYF LKSL++LPPL Sbjct: 128 LDREWISVVAHRDVPGKPALFGTTKTFLDYFNLKSLEELPPL 169 >gi|67752832|ref|ZP_00491791.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia pseudomallei Pasteur] Length = 456 Score = 194 bits (495), Expect = 5e-49 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|48862123|ref|ZP_00316021.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Microbulbifer degradans 2-40] Length = 352 Score = 194 bits (494), Expect = 7e-49 Identities = 82/162 (50%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE + AGE LS++++ L + P G ELVEVA G+R Sbjct: 11 IIEGAILAAGEALSIDRILSLFDENEQPEKDDIKQALLAIQEKNAGRGFELVEVASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + A +V RL E+P K SRA LETLA++AYRQPITR +IE++RGV S IKTL Sbjct: 71 QVVEDIAMWVNRLW-DEKPQKYSRALLETLALVAYRQPITRGDIEDVRGVAVSSHIIKTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER ++ VG RDVPGRPALY TT +FLDYF LKSLD+LP L Sbjct: 130 VEREWVKVVGHRDVPGRPALYATTRQFLDYFNLKSLDELPTL 171 >gi|47565939|ref|ZP_00236978.1| conserved hypothetical protein protein TIGR00281 [Bacillus cereus G9241] Length = 190 Score = 193 bits (493), Expect = 8e-49 Identities = 84/161 (52%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE LLFV+G E + EQ+A++L I GL++V+ A YR Sbjct: 8 SIIEGLLFVSGDEGIYPEQIAKVLGIEGNEVINILEEMQKECEGAHRGLQIVQYAKVYRF 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y ++L+ LS+AALETLAI+AYRQPITR E+EEIRGV +D A++TL+ Sbjct: 68 ATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLV 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E+GR + PGRP LYGTT EFLD FGLK+LDDLPPL Sbjct: 128 SHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPL 168 >gi|28869019|ref|NP_791638.1| hypothetical protein PSPTO1813 [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 193 bits (493), Expect = 9e-49 Identities = 82/162 (50%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 172 >gi|48788268|ref|ZP_00284247.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia fungorum LB400] Length = 408 Score = 193 bits (493), Expect = 1e-48 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L +L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGELRKLFADGVSADTVRTLLEDLRQDWSGRGVELVGLASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRSYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R IE +G RDVPGRPALY TT +FLD GLK+LD+LPPL Sbjct: 128 RNWIEVIGHRDVPGRPALYATTRQFLDDLGLKALDELPPL 167 >DUF387_Q8XZW0_8-167_PF04079.5 Length = 160 Score = 193 bits (493), Expect = 1e-48 Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL + L +L + G+ELV +A G+RLQ+ Sbjct: 2 VLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVALASGWRLQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE Y++RL E+PPK SRA +ETLAIIAYRQP+TR +IE+IRGV IK + + Sbjct: 62 RPEMRAYLDRL-HPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQVIKQIED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G RDVPGRPALY TT +FLD GL+SLD+LPPL Sbjct: 121 RGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPL 160 >DUF387_Q7X2Z5_57-216_PF04079.5 Length = 160 Score = 193 bits (492), Expect = 1e-48 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 1 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 61 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 121 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 158 >gi|31789455|gb|AAP58569.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 226 Score = 193 bits (492), Expect = 1e-48 Identities = 79/158 (50%), Positives = 103/158 (65%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEAL+FV+ EPLS + +AE+L+ GL+L EVAGG++ Sbjct: 57 AVIEALIFVSEEPLSAKTIAEVLKEDRPVIDQALAELEGEFNGRNAGLQLREVAGGWQFA 116 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PEY E+V LK+ KLS A+LETLA+IAY+QP+T EI EIRGV S +IKTLL+ Sbjct: 117 TRPEYHEHVRAFLKSRPSAKLSIASLETLAVIAYKQPVTVPEILEIRGVQSPSSIKTLLD 176 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI GR+D GRP +YGT+ EFL FGLK L +LP Sbjct: 177 KKLIVAKGRKDTVGRPMMYGTSKEFLMQFGLKDLGELP 214 >gi|49087854|gb|AAT51505.1| PA3197 [synthetic construct] Length = 333 Score = 193 bits (492), Expect = 1e-48 Identities = 85/162 (52%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + G EL EVA GYRL Sbjct: 12 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV +KTL Sbjct: 72 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 131 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 172 >DUF387_Q88EG7_33-194_PF04079.5 Length = 162 Score = 193 bits (491), Expect = 2e-48 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++IEA L +G+P SLE+L EL E P EL EVA GYR Sbjct: 1 SLIEAFLLASGKPQSLERLYELFEEAERPEPKVFRLALEVLGKSCDGRAFELKEVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + +YA +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV IKT Sbjct: 61 LQIREDYAPWVGRLWE-ERPQRYSRALLETLALIAYRQPITRGEIEDVRGVAVNSNIIKT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++ER I VG R+VPGRPA++ TT FLD+F LKSL+DLP L Sbjct: 120 MMEREWIRVVGYREVPGRPAMFATTKAFLDHFNLKSLEDLPAL 162 >gi|40062485|gb|AAR37437.1| conserved hypothetical protein TIGR00281 [uncultured bacterium 105] Length = 225 Score = 193 bits (491), Expect = 2e-48 Identities = 77/158 (48%), Positives = 101/158 (63%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 8 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 67 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 68 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 128 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLPN 165 >DUF387_Q82TY6_23-182_PF04079.5 Length = 160 Score = 193 bits (491), Expect = 2e-48 Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E +L EPLS+ L +L E G+ LV VAGG+R Q+ Sbjct: 2 ILETVLLTTPEPLSISDLKKLFEGNIDKKTLHESLTILSEKWHDSGINLVSVAGGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 KPE +++RL +RPP+ SRA +ETLAIIAYRQP+TR +IEEIRGV S IKTL Sbjct: 62 KPEMQVFLDRL-NPQRPPRYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G+RD+PG+P LY TT FLD L+SL+ LP L Sbjct: 121 RGWIETIGQRDIPGKPYLYATTRHFLDDLNLQSLEQLPSL 160 >gi|74317275|ref|YP_315015.1| Predicted transcriptional regulator [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 193 bits (491), Expect = 2e-48 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EPL+ +L + E G+EL++VA G+R QT Sbjct: 15 VLEAALLAAIEPLTPAELKRMFEHELSNETLRRALDELRAAWHGRGVELIQVADGWRFQT 74 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + E ++ RL K E+PP+ SRA LETLAIIAYRQP+TR +IE++RGV + IK L E Sbjct: 75 RAEMQPWLSRL-KNEKPPRYSRAVLETLAIIAYRQPVTRGDIEDVRGVAVNPNIIKALEE 133 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPAL+GTT FL GL++L +LPPL Sbjct: 134 RGWIEAIGHRDVPGRPALFGTTGHFLSDLGLRTLSELPPL 173 >DUF387_Q885L8_11-172_PF04079.5 Length = 162 Score = 192 bits (490), Expect = 2e-48 Identities = 82/162 (50%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P +LE+L EL P EL EVA GYRL Sbjct: 2 LLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++ +V RL + ERP + SRA LETLA+IAYRQPITR EIE++RGV + I KTL Sbjct: 62 QIRDRFSPWVGRLWE-ERPQRYSRAMLETLALIAYRQPITRGEIEDVRGVAVNSHIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LKSLD+LPPL Sbjct: 121 LEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPL 162 >gi|46310837|ref|ZP_00211455.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia cepacia R18194] Length = 343 Score = 192 bits (490), Expect = 2e-48 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|74016036|ref|ZP_00686663.1| Conserved hypothetical protein 281 [Burkholderia ambifaria AMMD] Length = 340 Score = 192 bits (490), Expect = 2e-48 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|34498842|ref|NP_903057.1| hypothetical protein CV3387 [Chromobacterium violaceum ATCC 12472] Length = 210 Score = 192 bits (490), Expect = 2e-48 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 13 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 73 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 132 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 171 >gi|67666919|ref|ZP_00464156.1| Conserved hypothetical protein 281 [Burkholderia cenocepacia HI2424] Length = 345 Score = 192 bits (489), Expect = 3e-48 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|71898736|ref|ZP_00680905.1| Conserved hypothetical protein 281 [Xylella fastidiosa Ann-1] Length = 254 Score = 192 bits (489), Expect = 3e-48 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCTERSVELVEVASGFRF 77 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 78 QLKADVHAWVSPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >DUF387_Q605S2_5-166_PF04079.5 Length = 162 Score = 192 bits (488), Expect = 4e-48 Identities = 85/163 (52%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 AI+EA LF A PLSL +L L P LEL +VA GYR Sbjct: 1 AILEAALFAAQRPLSLAELEALFGEDERPATEEIRLALATLADEYAARPLELRKVASGYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 Q + YA ++ RL + ERP + SRA LETLAIIAYRQP+TR +IEEIRGV S G I+T Sbjct: 61 FQVRAAYAPWISRLFE-ERPGRYSRALLETLAIIAYRQPVTRGQIEEIRGVAVSSGIIRT 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER + VG RDVPGRPAL+ TT +FLD+F L+SL DLP L Sbjct: 120 LTEREWVTVVGHRDVPGRPALFATTPQFLDHFNLESLADLPAL 162 >gi|51892940|ref|YP_075631.1| hypothetical protein STH1802 [Symbiobacterium thermophilum IAM 14863] Length = 219 Score = 191 bits (487), Expect = 4e-48 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 9 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 69 RPEAAEYVERLLQPKSR-GLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP Sbjct: 128 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPP 165 >gi|67546962|ref|ZP_00424870.1| Conserved hypothetical protein 281 [Burkholderia vietnamiensis G4] Length = 340 Score = 191 bits (487), Expect = 5e-48 Identities = 80/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP +++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 69 KPAMRHFLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 128 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 167 >gi|15839043|ref|NP_299731.1| hypothetical protein XF2452 [Xylella fastidiosa 9a5c] Length = 327 Score = 191 bits (486), Expect = 6e-48 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 18 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRF 77 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 78 QLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 136 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 137 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >DUF387_Q9HZ43_11-172_PF04079.5 Length = 162 Score = 191 bits (486), Expect = 6e-48 Identities = 85/162 (52%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 ++E +L AG+PLSLE+LAEL + G EL EVA GYRL Sbjct: 2 LLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVASGYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q + ++ +V RL + ERP + SRA LETL +IAYRQPITR EIEEIRGV +KTL Sbjct: 62 QIRERFSPWVGRLWE-ERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIVKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I VG R+VPGRPA+ TT FLDYF LKSLD+LPPL Sbjct: 121 MEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 162 >gi|16079378|ref|NP_390202.1| hypothetical protein BSU23210 [Bacillus subtilis subsp. subtilis str. 168] Length = 197 Score = 190 bits (485), Expect = 7e-48 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK ++A Y+++L++ LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L+ Sbjct: 70 STKKDFAPYLKKLIEVPS-KGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 129 AKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 169 >gi|70728992|ref|YP_258726.1| segregation and condensation protein B [Pseudomonas fluorescens Pf-5] Length = 343 Score = 190 bits (485), Expect = 7e-48 Identities = 84/162 (51%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++EA L +G+P SLE+L EL E P EL EVA GYRL Sbjct: 12 LLEAFLLASGKPQSLERLFELFEEAERPDPAVFKKALALLGKSCEGRAFELKEVASGYRL 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 Q + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV + I KTL Sbjct: 72 QIREKFAPWVGRLWE-ERPQRYSRAMLETMALIAYRQPITRGEIEDVRGVAVNSHIVKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 131 LEREWIRVVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >gi|71908074|ref|YP_285661.1| Prokaryotic chromosome segregation and condensation protein ScpB [Dechloromonas aromatica RCB] Length = 178 Score = 190 bits (485), Expect = 8e-48 Identities = 76/160 (47%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A EP++ + ++ + +EL+++A G+R +T Sbjct: 9 VLEAALLAAREPMTPSDMKKMFDEEFSSETLRKLLDQLREEWAERPVELIQLASGWRFRT 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 + EY Y+ERL ERPPK SRA LETLAIIAYRQP+TR +IEEIRGV +KTL E Sbjct: 69 RAEYLPYIERL-NPERPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVAVNTNVVKTLEE 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT +FLD GL+S+ +LPPL Sbjct: 128 RGWIDVVGHRDTPGRPALFATTKQFLDDLGLRSVSELPPL 167 >gi|18145467|dbj|BAB81510.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 195 Score = 190 bits (485), Expect = 9e-48 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 20 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 79 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 80 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 139 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 140 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 180 >gi|29376103|ref|NP_815257.1| conserved hypothetical protein TIGR00281 [Enterococcus faecalis V583] Length = 201 Score = 190 bits (485), Expect = 9e-48 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 + IEA+LFV GE + LE+LA LLE L ++EV + Sbjct: 5 SQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFV 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L Sbjct: 65 LTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 125 VARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 166 >DUF387_Q7NSN3_12-171_PF04079.5 Length = 160 Score = 190 bits (484), Expect = 9e-48 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPLS+ QL L G+ELV++A G+R + Sbjct: 2 VLETALLTAQEPLSVSQLKRLFTEDVKAALINDILEDIQGDWRGRGIELVKLASGWRFRA 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + E+ Y+ RL E+PP+ SRA +ETLAIIAY+QP+TR +IE IRGV+ S ++TLLE Sbjct: 62 RAEFTPYLNRL-NPEKPPRYSRAVMETLAIIAYKQPVTRGDIEAIRGVSVSTNVMQTLLE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G +DVPGRP LY TT +FLD SL+DLPPL Sbjct: 121 RGWIEVIGHKDVPGRPGLYATTRKFLDDLSFVSLNDLPPL 160 >gi|48729623|ref|ZP_00263373.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pseudomonas fluorescens PfO-1] Length = 337 Score = 190 bits (484), Expect = 1e-47 Identities = 81/163 (49%), Positives = 104/163 (63%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 +++EA L +G+P SLE+L EL P EL EVA GYR Sbjct: 11 SLLEAFLLASGKPQSLERLYELFEEGERPEPPVFKKALTLLGKSCEGRAFELKEVASGYR 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKT 117 LQ + ++A +V RL + ERP + SRA LET+A+IAYRQPITR EIE++RGV +KT Sbjct: 71 LQIREKFAPWVGRLWE-ERPQRYSRALLETMALIAYRQPITRGEIEDVRGVAVNTNIVKT 129 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER I VG RDVPG+PA++ TT FLD+F LK+LDDLPPL Sbjct: 130 LMEREWIRIVGYRDVPGKPAMFATTKAFLDHFNLKNLDDLPPL 172 >DUF387_Q63TP4_8-167_PF04079.5 Length = 160 Score = 190 bits (483), Expect = 1e-47 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 2 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 KP Y++RL E+PPK SRA LETLAIIAYRQP+TR +IEEIRGV +K L + Sbjct: 62 KPAMRTYLDRL-HPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLED 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G RDVPGRPALY TT +FLD GLK+LDDLP L Sbjct: 121 RGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPAL 160 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 190 bits (483), Expect = 1e-47 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 + IEA+LFV GE + LE+LA LLE L ++EV + Sbjct: 1 SQIEAILFVVGEEGIGLEELAYLLEKSTAKTYEELTKLKEHYASDNKSALNILEVGNHFV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA +++ ++ LS+AALETL+IIAY+QPI+R EI+EIRGV + G+I+ L Sbjct: 61 LTTKKKYASLLKKYAQSPMSNALSQAALETLSIIAYKQPISRIEIDEIRGVQTSGSIQKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LIEE GR D PGR LYGTT F+DYFGLKSLD+LP + Sbjct: 121 VARQLIEEKGRVDGPGRAILYGTTKYFMDYFGLKSLDELPDI 162 >DUF387_SCPB_18-177_PF04079.5 Length = 160 Score = 190 bits (483), Expect = 1e-47 Identities = 77/160 (48%), Positives = 113/160 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 1 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 61 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ +LP L Sbjct: 121 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIKELPSL 160 >gi|62512969|ref|ZP_00384551.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus casei ATCC 334] Length = 206 Score = 189 bits (482), Expect = 1e-47 Identities = 79/160 (49%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRLQ 60 +EA+L+ AGE ++L +LA +LEI GL+L + A Y L Sbjct: 5 LEAILYTAGESGVTLGELAGILEISESAMRQQLDAYRQRLAADDQRGLQLQQFADRYYLL 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKP YA +++ LS+AALE LAIIAY+QPITR EI+EIRGV S GA+ TL Sbjct: 65 TKPAYAPAIKKYFAGPPAAGLSQAALEVLAIIAYQQPITRIEIDEIRGVQSSGALTTLAA 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+E GR++ PGRP LY TT FLDYFGL L DLPPL Sbjct: 125 RQLIKEAGRKEAPGRPMLYATTQFFLDYFGLNRLADLPPL 164 >DUF387_Q6SI35_7-166_PF04079.5 Length = 160 Score = 189 bits (482), Expect = 2e-47 Identities = 77/158 (48%), Positives = 101/158 (63%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEAL+F + EPL+++ L +LLE P GL+LV+VAGG+++ T Sbjct: 2 IIEALVFASPEPLTIKTLFKLLEDEPQEDVEAALAAVQADYDRPGGLQLVKVAGGFQIVT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE E+V RL KL+ +LETLA++AYRQP+T E+ EIRGVN+ G + TL+ER Sbjct: 62 RPELHEWVRRLFHERSTQKLTVQSLETLAVVAYRQPVTAPEVSEIRGVNTSGVLSTLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+ VGR+ V GRP LY TT EFL FGL L DLP Sbjct: 122 RLIKVVGRKKVIGRPFLYATTQEFLIRFGLSDLKDLPN 159 >DUF387_SCPB_20-180_PF04079.5 Length = 161 Score = 189 bits (482), Expect = 2e-47 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IIE+LLFV+GEPL+L+ + ++E G++++ + G Y+L Sbjct: 1 SIIESLLFVSGEPLALKDICRIVEEDFKYVEDLMRELMNIYNGDSSRGIKIISLNGTYQL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK + +EYV++LLK LS+A+LE+LAII Y+QPITR EI+EIRGV S+ AI+ L+ Sbjct: 61 VTKTKNSEYVQKLLKKNVRQSLSQASLESLAIICYKQPITRVEIDEIRGVKSESAIQRLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ L+EE GR +VPGRP LYGTTDEFL +F L L DLP + Sbjct: 121 EKNLVEETGRLEVPGRPILYGTTDEFLRHFALNDLGDLPSI 161 >gi|67675474|ref|ZP_00472231.1| Conserved hypothetical protein 281 [Chromohalobacter salexigens DSM 3043] Length = 287 Score = 189 bits (481), Expect = 2e-47 Identities = 77/162 (47%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 + EA L AGEPL+ E+L L + P LELVE A G+++ Sbjct: 11 VCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQV 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 + + ++ ++ RL ERP + SRA LETLA+IAYRQP+TR +IEE+RGV+ S ++TL Sbjct: 71 RIRARFSPWISRLW-DERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG I VG+RDVPGRP++Y TT FLD FGLK+LD LPP+ Sbjct: 130 TERGWIRVVGQRDVPGRPSVYATTRTFLDDFGLKTLDALPPM 171 >gi|47575390|ref|ZP_00245425.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rubrivivax gelatinosus PM1] Length = 261 Score = 188 bits (480), Expect = 3e-47 Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L +L L + G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLRELRTLFDDQLGPDTLRVLLDELARDWEDRGVELVAVANGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTLLE 120 +PE EY++RL E+PP+ +RA LETLAIIAYRQP+TR +IE+IRGV +K L + Sbjct: 69 RPELREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSQLLKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG IE +G R+ PGRPAL+ TT +FLD GL +L+ LP L Sbjct: 128 RGWIEAIGHRETPGRPALFATTRQFLDDLGLATLEQLPAL 167 >gi|69945595|ref|ZP_00636593.1| Conserved hypothetical protein 281 [Shewanella denitrificans OS-217] Length = 206 Score = 188 bits (480), Expect = 3e-47 Identities = 77/162 (47%), Positives = 102/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L + G++LV+VA GYR Sbjct: 15 LIEASLFVLAKPMTIKALKETVLADFDVSRKRIQEVIDELQQDYQERGVQLVKVASGYRF 74 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE+IRGV S IK L Sbjct: 75 QTQELLSPYLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQIRGVAVSSHIIKNL 133 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG +DVPGRPALY TT++FL YFGL L DLP L Sbjct: 134 ADRHWIKSVGHKDVPGRPALYATTNDFLAYFGLTKLADLPQL 175 >DUF387_Q8PK59_20-181_PF04079.5 Length = 162 Score = 188 bits (479), Expect = 3e-47 Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA L + +PL+L QL L + P G+ELVEVA G+R Sbjct: 2 IIEAALLASSQPLTLAQLLGLFPEDEPAPPGSVERALELLREACADRGVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q K + +V RL TER K +RA LETLA+IAYRQPITR EIE++RGV S I+ L Sbjct: 62 QVKADVHGWVARLW-TERRTKYTRATLETLALIAYRQPITRGEIEQVRGVAVSSNIIQAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RDVPG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDVPGKPALFGTTKGFLDYFGLKRLDELPPL 162 >gi|52004046|gb|AAU23988.1| SMC interacting protein [Bacillus licheniformis ATCC 14580] Length = 197 Score = 188 bits (479), Expect = 4e-47 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 10 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 69 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L+ Sbjct: 70 STKKEFAVYLKKLIEAPS-KGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 129 AKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 169 >gi|23025128|ref|ZP_00064300.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 199 Score = 188 bits (478), Expect = 5e-47 Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFV+G E +S++ ++ + L++ E YR Sbjct: 5 SQIEALLFVSGDEGISVKNMSIITGFDRSAIQGLLEELVLKYDTDLSSALQIRESDDVYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKPE V++ + LS+A LETL I+AY+QPITR EI+ IRGV S G ++ L Sbjct: 65 LVTKPELGGTVKQYFDSPVNATLSQAQLETLVIVAYKQPITRVEIDTIRGVQSSGTLQKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ EVGR+D PGRP ++GTTDEFLDYFGLKS+++LPPL Sbjct: 125 ALRQLVHEVGRKDEPGRPIMFGTTDEFLDYFGLKSIEELPPL 166 >gi|66857743|ref|ZP_00401786.1| Conserved hypothetical protein 281 [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 188 bits (478), Expect = 5e-47 Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E LLF+A PL++E++ + G+ L EVAGG++L+T Sbjct: 125 VVETLLFLAERPLTVEEMRAASGVDVERLEKALDKLSGHYREGPCGIVLHEVAGGWQLRT 184 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P+ +++ R LK +P +L+RAALETLAIIAYRQP+TR EIE+IRGV+ +K LLER Sbjct: 185 SPDNSDFARRFLK-VKPQRLTRAALETLAIIAYRQPVTRPEIEDIRGVDCGAVVKALLER 243 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L++ +G+++ PGRP LYGTT EFL++F LK L LP L Sbjct: 244 KLVKILGKKEEPGRPILYGTTREFLEFFALKDLASLPTL 282 >gi|68212993|ref|ZP_00564828.1| Conserved hypothetical protein 281 [Methylobacillus flagellatus KT] Length = 184 Score = 188 bits (478), Expect = 5e-47 Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L AGEPLSLE L E +ELV+VA G+R Q Sbjct: 13 VLEAVLLTAGEPLSLEMLLRPFEGRMERATLRMLLDELRQEWQGRSMELVQVASGWRFQA 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 + + A ++ RL ERP + SRAALETLAIIAYRQP+TR +IEEIRGV + ++ LE Sbjct: 73 RADLAPFIARL-NPERPMRYSRAALETLAIIAYRQPVTRGDIEEIRGVAVNPNIMRQFLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R I+ VG+RDVPGRP+LY TT FLD GL+SL +LPP+ Sbjct: 132 RNWIDIVGQRDVPGRPSLYATTKTFLDDLGLRSLSELPPI 171 >gi|23099282|ref|NP_692748.1| hypothetical protein OB1827 [Oceanobacillus iheyensis HTE831] Length = 192 Score = 187 bits (477), Expect = 6e-47 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 8 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 68 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 128 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 168 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 187 bits (477), Expect = 6e-47 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 + IEALLFVAGE LSL LA +L + P L L+E A YR Sbjct: 1 SQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ L Sbjct: 61 LVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 121 LAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 159 >DUF387_Q9PAP3_17-178_PF04079.5 Length = 162 Score = 187 bits (477), Expect = 7e-47 Identities = 82/162 (50%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E L + +PL+L QL L + P +ELVEVA G+R Sbjct: 2 IVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTCAERSVELVEVASGFRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 Q K + +V L TER K SRA LETLA+IAYRQPITR EIE+IRGV I TL Sbjct: 62 QLKADVHAWVTPLW-TERKTKYSRATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER I VG RD PG+PAL+GTT FLDYFGLK LD+LPPL Sbjct: 121 EEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 162 >gi|28896503|ref|NP_802853.1| hypothetical protein SPs1591 [Streptococcus pyogenes SSI-1] Length = 183 Score = 187 bits (476), Expect = 8e-47 Identities = 79/159 (49%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 + IEALLFVAGE LSL LA +L + P L L+E A YR Sbjct: 5 SQIEALLFVAGEEGLSLRHLASMLSLTPTALQQQLEKLSQKYEKDQHSSLCLIETANTYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE + KT LSRA+LE L+I+AY+QPITR EI++IRGVNS GA+ L Sbjct: 65 LVTKEGFAELLRAYAKTPMNQSLSRASLEVLSIVAYKQPITRIEIDDIRGVNSSGALSKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L LI E G++DV GRP LY TTD FLDY G+ LD+L Sbjct: 125 LAFDLIREAGKKDVVGRPHLYATTDYFLDYMGINHLDEL 163 >gi|68179236|ref|ZP_00552314.1| Prokaryotic chromosome segregation and condensation protein ScpB [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 187 bits (476), Expect = 8e-47 Identities = 74/160 (46%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+LF + EPL ++L L E+ G+ L EVAGG++++ Sbjct: 10 ARLEAVLFSSDEPLRFDRLQALFEVETTVLRQALQELMVEYAQDNRGVVLQEVAGGFQIR 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA ++ +L R +LS+AA E+LAIIAYRQP+TRAEIE +RGV+S G ++ L+E Sbjct: 70 TRAEYAAWILKL-NKSRVTRLSKAATESLAIIAYRQPVTRAEIEYLRGVDSGGVVRMLME 128 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L++ VG++DVPGRP LYGT+ FL++FGLK L +LP L Sbjct: 129 KQLVKIVGKKDVPGRPLLYGTSRHFLEFFGLKDLSELPNL 168 >gi|33596479|ref|NP_884122.1| hypothetical protein BPP1858 [Bordetella parapertussis 12822] Length = 364 Score = 187 bits (475), Expect = 1e-46 Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E L A +P+ ++ +L GLELV++A G+R Sbjct: 11 VLETALLCASQPMQFAEMRKLFGDDQDIDNTALRAWLEALQAQWNERGLELVQLASGWRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+IRGV S +K L Sbjct: 71 QSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 130 EDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 171 >DUF387_Q67NF6_8-166_PF04079.5 Length = 159 Score = 186 bits (474), Expect = 1e-46 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EALL + EPL+++++AE++ + GL + E+AGGY L T Sbjct: 2 ILEALLLASPEPLTIKRIAEVIGLDERDAALLMADLQKDYEAPHRGLAIREMAGGYVLTT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +PE AEYVERLL+ + LS AALETLAIIAYRQPIT+AEIE +RGV D A++TLLER Sbjct: 62 RPEAAEYVERLLQPKSR-GLSHAALETLAIIAYRQPITKAEIENVRGVKVDRALETLLER 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLIE+ GR++ PGRP LYGTT EFL YFGL+ L +LPP Sbjct: 121 GLIEDKGRKEAPGRPILYGTTAEFLRYFGLRELSELPP 158 >DUF387_SCPB_10-169_PF04079.5 Length = 160 Score = 186 bits (474), Expect = 1e-46 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LEI G+EL+E A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK ++A Y+++L++ LS+A+LE LAI++Y+QPITRAEIEEIRGV S+ + +L+ Sbjct: 61 STKKDFAPYLKKLIEVPS-KGLSQASLEVLAIVSYKQPITRAEIEEIRGVKSERILHSLV 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT FL+ FGLK+LD+LPPL Sbjct: 120 AKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPL 160 >gi|68542952|ref|ZP_00582671.1| Conserved hypothetical protein 281 [Shewanella baltica OS155] Length = 198 Score = 186 bits (474), Expect = 1e-46 Identities = 79/162 (48%), Positives = 105/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS + L + L++ G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLDVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLPPL Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPPL 171 >gi|69949384|ref|ZP_00637381.1| Conserved hypothetical protein 281 [Shewanella frigidimarina NCIMB 400] Length = 245 Score = 186 bits (474), Expect = 2e-46 Identities = 74/162 (45%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +PLS++ + E L + G++LV++A GYR Sbjct: 12 LIEASLFVLAKPLSVKAIKETVLADFSVSRTRIQETLDELQQDYQERGVQLVKIASGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ + Y++ L + + P K SRA LETLA+IAYRQP+TR +IE IRGV S IK+L Sbjct: 72 QTQEILSPYLQPLWQEKSP-KYSRATLETLAVIAYRQPVTRGDIEYIRGVAISSHIIKSL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPG+PALY TT FLDYF L L DLP L Sbjct: 131 ADRQWIKVVGHKEVPGKPALYATTPAFLDYFNLTKLADLPAL 172 >gi|56460845|ref|YP_156126.1| Predicted transcriptional regulator containing the HTH domain [Idiomarina loihiensis L2TR] Length = 190 Score = 185 bits (472), Expect = 2e-46 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 9 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L + E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 69 QTRAELGQRLAGLWQ-EKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 128 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 169 >gi|53799098|ref|ZP_00359272.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Chloroflexus aurantiacus] Length = 209 Score = 185 bits (471), Expect = 3e-46 Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLFVA EP++L+QL +L++ G+ L + Sbjct: 40 LIEALLFVAAEPMTLDQLTRILDVEAAEVVNAIDELSTIYAQR--GIRLQRHNDHVMFVS 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 PE A + R L ++ +LS AALE LAIIAYRQPITRA+I+ IRGV+S A++ LL R Sbjct: 98 APEAAPTIRRFLGAQQNQRLSHAALENLAIIAYRQPITRAQIDAIRGVDSSAALRALLSR 157 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI E GR +V GRP LY TT FL FGL SLD+LPP+ Sbjct: 158 DLICEAGRLEVLGRPILYATTPTFLQQFGLTSLDELPPI 196 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 185 bits (471), Expect = 3e-46 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IE LLF +G E ++ +QL+++L+I GL +++ + L Sbjct: 1 GVIEGLLFASGDEGVTAKQLSKILDIGLDTVEHILEELRFEYEREDRGLMIIQSNNIFHL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE++ Y +RL+ + R K+S+AALETLAIIAYRQPITRAEI+EIRGV S+ ++TL+ Sbjct: 61 ATKPEHSSYFKRLIDSPRTSKMSQAALETLAIIAYRQPITRAEIDEIRGVRSERPVQTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LIEE GR+D GRP L+ T+ EFL +FGL +LDDLPPL Sbjct: 121 TRNLIEETGRKDTVGRPVLFQTSKEFLTFFGLATLDDLPPL 161 >gi|72161609|ref|YP_289266.1| Prokaryotic chromosome segregation and condensation protein ScpB [Thermobifida fusca YX] Length = 193 Score = 185 bits (470), Expect = 4e-46 Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V +P+S +LA G +L EVA G+R T+ Sbjct: 17 LEAVLMVVDQPVSAYELARAFGTDVETVTRVLRETAREYTEQGRGFDLREVAEGWRFYTR 76 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PE AE VE L+ +L++AALETLA++AYRQP++R ++ IRGVN DG ++TL+ RG Sbjct: 77 PECAEAVEHFLRDGHEVRLTQAALETLAVVAYRQPVSRGKVSAIRGVNCDGVMRTLVLRG 136 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LIEE G+ G LY TT FL+ GL+SLD+LP L Sbjct: 137 LIEEAGQDPESG-AILYRTTSYFLERLGLRSLDELPDL 173 >DUF387_Q5M621_6-167_PF04079.5 Length = 162 Score = 185 bits (470), Expect = 4e-46 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 1 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 61 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 121 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 159 >gi|24374539|ref|NP_718582.1| hypothetical protein SO3014 [Shewanella oneidensis MR-1] Length = 198 Score = 185 bits (470), Expect = 5e-46 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 11 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 70 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 71 QTLEVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 129 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 130 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 171 >gi|52841676|ref|YP_095475.1| hypothetical protein lpg1446 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 196 Score = 185 bits (470), Expect = 5e-46 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 12 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV IKTL Sbjct: 72 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 131 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 172 >gi|55820358|ref|YP_138800.1| hypothetical protein stu0261 [Streptococcus thermophilus LMG 18311] Length = 193 Score = 184 bits (469), Expect = 5e-46 Identities = 79/159 (49%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALLFVAGE LSL +A+LLEIP L L+E + Y+ Sbjct: 6 ARLEALLFVAGEDGLSLRTMAQLLEIPVTGLTQSLEKLQAKYEADEDTALCLLESSNTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TKP++A + KT LSRA+LE L+I+AY+QPITRAE+++IRGVNS GAI L Sbjct: 66 IVTKPDFACLLRDYSKTPINQSLSRASLEVLSIVAYKQPITRAEVDDIRGVNSSGAIAKL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI E G++D GRP LY TTD FLDY G+ SLD+L Sbjct: 126 QAFGLIREAGKKDAVGRPNLYATTDYFLDYIGINSLDEL 164 >gi|24380086|ref|NP_722041.1| hypothetical protein SMU.1712c [Streptococcus mutans UA159] Length = 198 Score = 184 bits (469), Expect = 5e-46 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFVAGE LSL QLA LL+IP L L+E + Y+ Sbjct: 5 SKIEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 65 LVTKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 125 QAFDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELPD 165 >DUF387_Q7W9A9_10-171_PF04079.5 Length = 162 Score = 184 bits (468), Expect = 7e-46 Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 ++E L A +P+ ++ +L GLELV++A G+R Sbjct: 2 VLETALLCASQPMQFAEMRKLFGDDQDIDNTALRAWLEALQAQWNERGLELVQLASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q++P+ Y+ERL E+PPK SRA LETLAI+A+RQP+TR +IE+IRGV S +K L Sbjct: 62 QSRPQMQRYLERL-NPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +RG IE +G RD PGRPAL+ TT +FLD GL++LD+LPPL Sbjct: 121 EDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLRALDELPPL 162 >gi|28211198|ref|NP_782142.1| hypothetical protein CTC01528 [Clostridium tetani E88] Length = 189 Score = 184 bits (468), Expect = 7e-46 Identities = 74/155 (47%), Positives = 109/155 (70%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IIE+LLF +GEPL L+ ++E++E+ G++L+E+ Y+L Sbjct: 18 SIIESLLFASGEPLGLKDISEIIELNTLDTKEILQKMIREYEIEKRGIKLIEIEKKYQLV 77 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E + ++E+LLKT LS+AALETL+I+AY+QP+TR +++EIRGV SD A++TLL+ Sbjct: 78 TKEENSCFIEQLLKTNSSQSLSQAALETLSIVAYKQPVTRVDVDEIRGVKSDRALQTLLQ 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 + LI+E GR DVPGRP LY TT+EFL +FGL+S+ Sbjct: 138 KSLIKETGRLDVPGRPILYSTTEEFLKHFGLESIK 172 >gi|48870740|ref|ZP_00323459.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Pediococcus pentosaceus ATCC 25745] Length = 196 Score = 183 bits (467), Expect = 8e-46 Identities = 74/160 (46%), Positives = 97/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EALLFVAG E +S+E+L+ P L+L++ G Y+L Sbjct: 7 VEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPE A +E+ LS AALE L+I+AYRQPITR EI++IRGV S ++ L+ Sbjct: 67 TKPELASILEKYFDRNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVL 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L++ VGR + PGRP YGTTDEFLDYFGL+ + DLP L Sbjct: 127 RNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDIKDLPKL 166 >gi|74020841|ref|ZP_00691430.1| Conserved hypothetical protein 281 [Rhodoferax ferrireducens DSM 15236] Length = 230 Score = 183 bits (467), Expect = 9e-46 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+E L +PL L + L + G+ELV VA G+R Q+ Sbjct: 9 ILETALICTSQPLPLRDMRVLFDDRLGLDTLKVLLRELQQDWAQRGVELVNVASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA-IKTLLE 120 +PE E+++RL E+PP+ +RA LETLAIIAYRQP+TR +IE++RGV + IK L + Sbjct: 69 RPEMREFLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDIEDVRGVTVNSLLIKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RG IE +G R+ GRPAL+ TT FLD GL+SLD LP Sbjct: 128 RGWIEVIGHRETVGRPALFATTKHFLDDLGLESLDQLP 165 >DUF387_Q5QX76_8-169_PF04079.5 Length = 162 Score = 183 bits (467), Expect = 1e-45 Identities = 77/162 (47%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LF +PLS EQL +LL E G+ELV+VA GYR Sbjct: 2 LIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQSDYQERGIELVKVASGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT+ E + + L + E+PP+ S A LETLA+I YRQPITR EIE+IRGV+ S +KTL Sbjct: 62 QTRAELGQRLAGLWQ-EKPPRYSNALLETLALIVYRQPITRGEIEQIRGVSVSSQIMKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG ++ VG ++VPGRP LY +T++FLD F L L +LP + Sbjct: 121 QERGWVKVVGHKEVPGRPQLYASTNDFLDDFNLSDLSELPDI 162 >DUF387_Q73PC5_1-159_PF04079.5 Length = 159 Score = 183 bits (467), Expect = 1e-45 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >gi|15901703|ref|NP_346307.1| hypothetical protein SP1875 [Streptococcus pneumoniae TIGR4] Length = 189 Score = 183 bits (466), Expect = 1e-45 Identities = 82/160 (51%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFVAGE + + QLAELL +PP L L+E +G YR Sbjct: 5 AKIEALLFVAGEDGIRVRQLAELLSLPPTGIQQSLGKLAQKYEKDPDSSLALIETSGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP++AE ++ K LSRAALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFAEILKEYSKAPINQSLSRAALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI+E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIKEDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >gi|67916136|ref|ZP_00509857.1| Conserved hypothetical protein 281 [Clostridium thermocellum ATCC 27405] Length = 213 Score = 183 bits (465), Expect = 1e-45 Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRL 59 I E +LF +G+ +S+E+L+ + I G+ + E+ GY+L Sbjct: 23 GIFEGMLFASGDKVSIEKLSSITGIDKKTVKLVINNMIVKYNNDPSRGITIREINNGYQL 82 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +KPEY +Y+++L + ++ LS+AALETLAIIAY +PIT+A+IE+IRGVNSD AI LL Sbjct: 83 CSKPEYYDYIKQLFEPKQRSGLSQAALETLAIIAYNRPITKAKIEQIRGVNSDSAITKLL 142 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 E+ LI E GR D PG+P LY TTDEF FG KS DLP Sbjct: 143 EKNLIREAGRLDAPGKPVLYETTDEFFRSFGFKSDADLP 181 >DUF387_Q65HX2_10-169_PF04079.5 Length = 160 Score = 183 bits (465), Expect = 1e-45 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ AG E L+ +QL +LE+ G+ELVE A Y L Sbjct: 1 AIVEALLYAAGDEGLTKKQLLSVLEVDEAELLDIMLDVKETYEKEDRGIELVEYADTYML 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A Y+++L++ LS+AALE LAI++Y+QPITRAE+EEIRGV S+ +++L+ Sbjct: 61 STKKEFAVYLKKLIEAPS-KGLSQAALEVLAIVSYKQPITRAEVEEIRGVKSERILQSLV 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ EVGR D PGR LYGTT+ FL+ FGLK+L++LPPL Sbjct: 120 AKALLCEVGRADGPGRAILYGTTETFLEQFGLKTLEELPPL 160 >DUF387_Q7ZAJ6_10-171_PF04079.5 Length = 162 Score = 182 bits (464), Expect = 2e-45 Identities = 79/162 (48%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV G+PLS++ L E L + G++LV+VAGGYR Sbjct: 2 LIEASLFVLGKPLSVKMLKETVLADFSVSRDKIKAALEELQQDYQERGVQLVKVAGGYRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 QT + +++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV S IK+L Sbjct: 62 QTLEVLSPFLQPLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I+ VG ++VPGRPALY TT EFL YFGL +L DLP L Sbjct: 121 SDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPAL 162 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 182 bits (464), Expect = 2e-45 Identities = 78/161 (48%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 + IEALLFVAGE LSL QLA LL+IP L L+E + Y+ Sbjct: 1 SKIEALLFVAGEDGLSLRQLATLLDIPVTALLQQLEKMAQKYERDDNSALSLLESSKTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +YA+ + + KT LSRA+LE L+IIAY+QPITR E++ IRGVNS AI L Sbjct: 61 LVTKKDYADLLRQYSKTPINQSLSRASLEVLSIIAYKQPITRIEVDNIRGVNSSSAISKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI+E G+++V GRP LY T+D FLDY G+ SL++LP Sbjct: 121 QAFDLIQEAGKKEVLGRPNLYVTSDYFLDYMGINSLEELPD 161 >DUF387_Q5ZVJ4_11-172_PF04079.5 Length = 162 Score = 182 bits (464), Expect = 2e-45 Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EAL+ + EP++LE++ E + P EL++VAGG+++ Sbjct: 2 IVEALVLSSNEPVTLEKIQETFDEWQRPTLEDLQAIIESLKVDYSYRAFELIQVAGGFKV 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS-DGAIKTL 118 QTK +YA +V RL + E+P K SRA LETLAIIAY+QP+TRA+IE+IRGV IKTL Sbjct: 62 QTKSKYATWVARL-QIEKPAKYSRALLETLAIIAYKQPVTRADIEDIRGVAVNSQIIKTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +ER I G +DV G+PA+Y TT EFL+YF L L +LPPL Sbjct: 121 MEREWIRIAGYKDVVGKPAVYTTTKEFLNYFNLNYLSELPPL 162 >gi|23002837|ref|ZP_00046509.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus gasseri] Length = 196 Score = 182 bits (463), Expect = 2e-45 Identities = 72/160 (45%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L + L +LLEI P GL+L+ + Y+ Sbjct: 6 AQLEALLYAAGDDGLETDNLLQLLEISPSALRELANHLKDRLKNDENSGLQLICINHTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSAECGDVISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVNGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|467154|gb|AAA50918.1| unknown [Mycobacterium leprae] Length = 258 Score = 182 bits (463), Expect = 3e-45 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 58 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 117 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 118 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 177 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 178 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 215 >gi|71482443|ref|ZP_00662133.1| Conserved hypothetical protein 281 [Prosthecochloris vibrioformis DSM 265] Length = 208 Score = 182 bits (463), Expect = 3e-45 Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 IE+++F + E ++L+ + ++ + G + +AGGYR+ Sbjct: 4 QIESVIFASEEAITLQVIRQVTGVEMDSAALQEVVEAINREYLESGRPFSIHRIAGGYRM 63 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 ++ E+A + +LL + +LSR+ LE L+++AY QP+TR EI++IRGV+ D AI L+ Sbjct: 64 LSREEFAPLLRKLLAPKIRRRLSRSILEVLSVVAYHQPVTRGEIQQIRGVSPDYAIDRLM 123 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG IE GR D PGRP YGTT EFLD F L SL DLP L Sbjct: 124 ERGFIEVQGRADTPGRPLQYGTTKEFLDLFHLSSLKDLPKL 164 >gi|42526386|ref|NP_971484.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 171 Score = 182 bits (462), Expect = 4e-45 Identities = 68/159 (42%), Positives = 104/159 (65%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+L++ G+PL+ E L ++ + P G+EL ++ GG+ + Sbjct: 1 MVEAILYLEGDPLTDEALCKISGLSPEIVSDAIKALQESYASPQSGIELAKMMGGWVIMP 60 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E+++ + +LSRAA+ETL+IIAY QP+TRAEIE IRGV++D I+ L+E+ Sbjct: 61 KKDLWEHLKDRYGKKNEGRLSRAAMETLSIIAYSQPVTRAEIEAIRGVSADNMIRLLIEK 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+EVG++DVPG+PA++GTT EFL F L S+ DLP L Sbjct: 121 DLIKEVGKKDVPGKPAMFGTTKEFLKIFRLNSIADLPKL 159 >gi|56963581|ref|YP_175312.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 181 bits (461), Expect = 4e-45 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 9 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 69 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 128 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 129 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 169 >gi|29610174|dbj|BAC74222.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 181 bits (461), Expect = 5e-45 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP ++E LA++LE P G EL +AGG+R T+ Sbjct: 24 LEAVLMVVDEPATVEHLAKILERPKRQIADALRELADEYTGQGRGFELRLIAGGWRFYTR 83 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 P+YA VER + + +L++AALETLA++AYRQP++R+ + +RGVN DG ++TLL+RG Sbjct: 84 PKYATAVERFVLDGQQARLTQAALETLAVVAYRQPVSRSRVSAVRGVNCDGVMRTLLQRG 143 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 144 LVEEAGAEPETG-AILYRTTNYFLERMGLRGLDELPEL 180 >gi|27804826|gb|AAO22869.1| hypothetical protein [Myxococcus xanthus] Length = 237 Score = 181 bits (460), Expect = 6e-45 Identities = 72/157 (45%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 82 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 141 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 142 DPHSGEYVRRYL-RVKPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 200 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 L++ +G+R+ GRP LYGT+ EFL++F LK L LP Sbjct: 201 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSALP 237 >gi|20807774|ref|NP_622945.1| predicted transcriptional regulator containing the HTH domain [Thermoanaerobacter tengcongensis MB4] Length = 168 Score = 181 bits (460), Expect = 7e-45 Identities = 73/160 (45%), Positives = 92/160 (57%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LF AG+ + + LAE LE+ G+++V + Sbjct: 5 GKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMC 64 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 65 TNDSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLE 124 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 125 YNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 164 >gi|67919429|ref|ZP_00513007.1| Conserved hypothetical protein 281 [Chlorobium limicola DSM 245] Length = 221 Score = 181 bits (460), Expect = 7e-45 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 IEA++F + E ++L + ++ G + +AGGYR Sbjct: 29 QIEAVIFASEEAVTLSSIRQITGAEISLSQLDLLISALNDGYAASGLTFRIHRIAGGYRF 88 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+P + E ++R+ + KLS + LE L++IAY+QP+T+ EI+++RG D A+ LL Sbjct: 89 LTEPRFCELLKRIQAPKVRRKLSNSILEVLSVIAYKQPVTKGEIQQLRGTAPDYAVDRLL 148 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG I GR D PGRP YGTTD+FLD FGL SL DLP L Sbjct: 149 ERGFITVYGRADSPGRPLQYGTTDDFLDLFGLHSLRDLPKL 189 >DUF387_SCPB_5-164_PF04079.5 Length = 160 Score = 180 bits (458), Expect = 1e-44 Identities = 73/160 (45%), Positives = 92/160 (57%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LF AG+ + + LAE LE+ G+++V + Sbjct: 1 GKIEAILFAAGQAVKIRTLAEALEVTEEEVRELLKRLKEEYVKNHRGIDIVIFEDKVEMC 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T Y + V + LK E LS+AALE LAIIAY QPIT+AEIE IRGV SD I TLLE Sbjct: 61 TNDSYGDIVRKALKMEITQGLSQAALEVLAIIAYNQPITKAEIERIRGVRSDKPINTLLE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LI+E GR PGRP LY TT++FL YFG+ SL +LP + Sbjct: 121 YNLIKESGRASSPGRPILYSTTEDFLKYFGISSLKELPEI 160 >DUF387_Q5WH04_9-169_PF04079.5 Length = 161 Score = 180 bits (457), Expect = 1e-44 Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE LLFV G+ +S ++AEL+EI G+ L +A YRL Sbjct: 1 AKIEGLLFVTGDDGISPTEMAELVEISEDEVIQLLEVLSEQMAKEERGIRLARLANRYRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E+A+ ++L + LSRAALETLAI+AY+QPITRAEI+E+RGV S+ A+++L+ Sbjct: 61 TTKVEHADMYKKLASSPIHGGLSRAALETLAIVAYKQPITRAEIDEVRGVKSEKALQSLV 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEE GR GR LYGTT FLD+FGL+SL DLP L Sbjct: 121 SKLLIEECGRASGTGRAILYGTTPYFLDHFGLESLADLPDL 161 >gi|67909017|ref|ZP_00507415.1| Conserved hypothetical protein 281 [Polaromonas sp. JS666] Length = 244 Score = 180 bits (457), Expect = 1e-44 Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A +PL L ++ L G+ELV VA G+R Q+ Sbjct: 9 VLETALICAQQPLPLREMGVLFNGVLTADSLKLVLEDLQNDWAGRGVELVHVATGWRFQS 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTLLE 120 +P+ EY++RL E+PP+ +RA LETLAIIAYRQP+TR ++E+IRGV + I K L + Sbjct: 69 RPQMREYLDRL-HPEKPPRYTRATLETLAIIAYRQPVTRGDMEDIRGVTINSMILKQLED 127 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG +E +G R+ GRPALY TT +FLD G++SLD LP + Sbjct: 128 RGWVEVIGHRETVGRPALYATTRQFLDDLGVESLDQLPAM 167 >DUF387_Q7ZAN0_10-169_PF04079.5 Length = 160 Score = 180 bits (457), Expect = 1e-44 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 1 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 61 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 121 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 158 >gi|67985220|gb|EAM73178.1| Conserved hypothetical protein 281 [Kineococcus radiotolerans SRS30216] Length = 251 Score = 179 bits (456), Expect = 2e-44 Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L VA EP+ ++ LA P G EL EV GG+R+ Sbjct: 30 AALEAVLMVADEPVRVQALARATGEAPDEVDLLLRELAGEYAEQGRGFELREVGGGWRVY 89 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 ++ E+A+ VE L + KL++AALETLAI+AYRQP++RA + +RGV+ DG ++TLL Sbjct: 90 SRAEHADVVEAFLLDGQTAKLTQAALETLAIVAYRQPVSRARVSAVRGVSVDGVMRTLLT 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ E G G LY TT+EFL GL L+DLPPL Sbjct: 150 RGLVCEAGVEATSG-ATLYRTTEEFLQRMGLDGLEDLPPL 188 >gi|45658295|ref|YP_002381.1| hypothetical protein LIC12452 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 187 Score = 179 bits (456), Expect = 2e-44 Identities = 74/158 (46%), Positives = 100/158 (63%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +IEALLFV+GEPL L +A+ EI G L E+AG Y+ Sbjct: 10 GLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFV 69 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T +AE + + K +R +LS+++L+TLAIIAY+QPIT EI+EIRGV+S + +L+ Sbjct: 70 TNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLIS 129 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + LI+ VG ++VPGRPALYGTT EFL +FGL L DLP Sbjct: 130 KKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLP 167 >gi|13471184|ref|NP_102753.1| hypothetical protein mll1087 [Mesorhizobium loti MAFF303099] Length = 254 Score = 179 bits (456), Expect = 2e-44 Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 48 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 104 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R T + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 105 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 162 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT+ FLD+F L+ + DLP + Sbjct: 163 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGM 200 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 179 bits (456), Expect = 2e-44 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 1 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 61 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 121 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 160 >gi|68538778|ref|ZP_00578554.1| Conserved hypothetical protein 281 [Sphingopyxis alaskensis RB2256] Length = 197 Score = 179 bits (455), Expect = 2e-44 Identities = 71/159 (44%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+LF + EPL QLA L G+ELVE G + QT Sbjct: 9 IEAMLFASDEPLDARQLAARLGDDMAPGQVRAVIEAIAARHAGSGIELVERGGRWHFQTP 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 + A + R + + P KLSRAA E LAI+AY +P++RAEIE IRGV S G + L+E Sbjct: 69 ADLAHLLRR--ERDDPRKLSRAAAEVLAIVAYHEPVSRAEIEAIRGVQTSKGTLDVLMEA 126 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I GRR+VPGRP +Y TTD FL +FGL S DLP + Sbjct: 127 EWIAPAGRREVPGRPLIYKTTDTFLQHFGLSSRKDLPGI 165 >gi|62463496|ref|ZP_00382823.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactococcus lactis subsp. cremoris SK11] Length = 188 Score = 179 bits (455), Expect = 2e-44 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ATCELLLFVSGEAGLTLTELSSLTEMSKQACQQQIDYLKEKYHSDRESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK +++E ++ KT LS++ALE L+IIAY+QP+TR EI+++RGVNS G + TL Sbjct: 65 MATKEDFSEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRIEIDQLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TT+ FLDY G+ +L++LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTEFFLDYIGINNLEELPEI 166 >gi|67929775|ref|ZP_00522954.1| Conserved hypothetical protein 281 [Solibacter usitatus Ellin6076] Length = 308 Score = 179 bits (455), Expect = 2e-44 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+++VA EPL+L Q+A L+ PP G+ + EVAGGY++ Sbjct: 75 AVLEAIVYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMA 134 Query: 61 TKPEYAEYVERLLKTERPP-KLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE+ E V +K+ +PP KLS ALETLA+IAY+QP T EI EIRGV G KTLL Sbjct: 135 TKPEHHEAVRNFVKSLKPPLKLSLPALETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLL 194 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R LI GR++V G+P LY TT EFL FGLK L +LP L Sbjct: 195 DRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSL 235 >gi|11967874|emb|CAC19445.1| hypothetical protein [Streptococcus mitis] Length = 189 Score = 179 bits (455), Expect = 2e-44 Identities = 79/160 (49%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYR 58 A IEALLFV GE + + QLAELL +PP L+L+E G YR Sbjct: 5 AKIEALLFVRGEDWIRVRQLAELLSLPPTGIQQSLEKLSQKYEKDLDSSLDLIETGGAYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+++E ++ K LSR ALETL+IIAY+QPITR EI+ IRGVNS GA+ L Sbjct: 65 LVTKPQFSEILKEYSKAPINQSLSRPALETLSIIAYKQPITRIEIDAIRGVNSSGALAKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LI E G+++V GRP LY TTD FLDY G+ L++LP Sbjct: 125 QAFDLIREDGKKEVLGRPNLYVTTDYFLDYMGINHLEELP 164 >gi|68174172|ref|ZP_00547442.1| Conserved hypothetical protein 281 [Frankia sp. CcI3] Length = 191 Score = 179 bits (455), Expect = 2e-44 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA +P+ + +LA L P G L GG+R Sbjct: 17 ALLEAVLMVAEKPVGVAELATGLGAPALEVERLLAQLAEQYVRDGRGFRLRHTGGGWRFY 76 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLA++AY+QP++R I +RGV++DG I+TL Sbjct: 77 TADECAPWVERFVLAGQSARLSQAALETLAVVAYQQPVSRGRISAVRGVSADGVIRTLTA 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGL+EEVG G LYGTTD FL+ GL+ LD+ Sbjct: 137 RGLVEEVGHDPETG-AILYGTTDYFLERMGLRGLDE 171 >gi|68547961|ref|ZP_00587484.1| Conserved hypothetical protein 281 [Shewanella amazonensis SB2B] Length = 198 Score = 178 bits (454), Expect = 3e-44 Identities = 76/162 (46%), Positives = 98/162 (60%), Gaps = 4/162 (2%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFV +P++++ L E L G+ LV+VAGGYR Sbjct: 12 LIEACLFVQQKPMTIKALREGVLAPFAVSRERISTVVAELMVDYQERGVNLVKVAGGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI-KTL 118 QT+ Y++ L + E+ PK SRA LETLA+IAYRQP+TR +IE++RGV I KTL Sbjct: 72 QTQETLNPYLQTLWQ-EKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVALGSHILKTL 130 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +R I VG ++VPGRPALY TT EFL YFGL +L LP L Sbjct: 131 SDRRWIRVVGHKEVPGRPALYATTSEFLAYFGLDNLASLPAL 172 >gi|30024034|ref|NP_267432.2| hypothetical protein L108430 [Lactococcus lactis subsp. lactis Il1403] Length = 188 Score = 178 bits (454), Expect = 3e-44 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 5 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 65 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 125 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 166 >DUF387_SCPB_6-167_PF04079.5 Length = 162 Score = 178 bits (454), Expect = 3e-44 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 1 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 61 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 121 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 160 >gi|42519011|ref|NP_964941.1| hypothetical protein LJ1085 [Lactobacillus johnsonii NCC 533] Length = 196 Score = 178 bits (454), Expect = 3e-44 Identities = 73/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A +EALL+ AG+ L E L +LLEI P GL+L+ + Y+ Sbjct: 6 AELEALLYAAGDDGLETENLLQLLEISPAALRELANHLKDRLKNDENSGLQLICINQTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ + + + + + LS++ALE L+IIAYRQPITR EI+++RGVNS GA++TL Sbjct: 66 LTTSPKCGDIISKFFQKDLSKNLSQSALEILSIIAYRQPITRVEIDDLRGVNSAGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLI+ G++DVPG P LY TTD FL YF +SL DLP Sbjct: 126 VWRGLIKVDGKKDVPGHPNLYVTTDYFLQYFNYESLADLP 165 >gi|25011683|ref|NP_736078.1| hypothetical protein gbs1643 [Streptococcus agalactiae NEM316] Length = 194 Score = 178 bits (454), Expect = 3e-44 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 7 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 67 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 127 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 163 >DUF387_Q98LC4_45-200_PF04079.5 Length = 156 Score = 178 bits (454), Expect = 3e-44 Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EA++F + EP+S +QLA L P G+ LV V + +T Sbjct: 4 EAIVFASTEPVSEKQLAARL---PDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 60 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R T + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + TLLE Sbjct: 61 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT+ FLD+F L+ + DLP + Sbjct: 119 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGM 156 >gi|50590273|ref|ZP_00331674.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Streptococcus suis 89/1591] Length = 189 Score = 178 bits (453), Expect = 4e-44 Identities = 78/161 (48%), Positives = 99/161 (61%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A IE LLFVAGE L+L LAE+LE+ P GL ++E + Y+ Sbjct: 5 AEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSEKYMADKASGLAILESSNRYK 64 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK EYA + KT +SRA LETL+I+AY+QPITR E+++IRGVNS GAI L Sbjct: 65 LVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQPITRIEVDDIRGVNSSGAISKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI E G+++V GRP LY TTD FLDY G+ SL++LP Sbjct: 125 QAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSLEELPD 165 >gi|71369692|ref|ZP_00660118.1| Conserved hypothetical protein 281 [Nocardioides sp. JS614] Length = 259 Score = 178 bits (452), Expect = 5e-44 Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EALL +A +P+ LA P G EL V GG+R T+ Sbjct: 45 LEALLIIADQPMDTMTLATAAGYPVAEVSTALEGLAVEYTEQGRGFELRHVGGGWRYYTR 104 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EYA VE + + +L++AALETLA++AY+QP++RA + IRGVN DG ++TLL RG Sbjct: 105 DEYAAVVEGFVLDGQQARLTQAALETLAVVAYKQPVSRARVSAIRGVNVDGVMRTLLTRG 164 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT FL+ G+ SLDDLP L Sbjct: 165 LVEEAGHDHETG-ANLYRTTTYFLERIGVTSLDDLPEL 201 >DUF387_Q5LQJ0_23-178_PF04079.5 Length = 156 Score = 178 bits (452), Expect = 6e-44 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 2 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 59 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 117 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 156 >DUF387_Q8KF54_10-171_PF04079.5 Length = 162 Score = 178 bits (452), Expect = 6e-44 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 3 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 63 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 123 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 162 >gi|56679084|gb|AAV95750.1| segregation and condensation protein B [Silicibacter pomeroyi DSS-3] Length = 218 Score = 177 bits (450), Expect = 8e-44 Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+ + LA + P G+ +V+V G+ ++T Sbjct: 24 MVEAVLFASPDPVGVGDLAARM---PHGSDPAQALEMLRKRYEGRGVRVVQVGEGWAIRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 81 APDLGFLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T FLD+FGL+S DLP L Sbjct: 139 MEWIRLGRRRMTPGRPVTFVVTPHFLDHFGLESARDLPGL 178 >gi|62516079|ref|ZP_00387445.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 200 Score = 177 bits (450), Expect = 8e-44 Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGEP-LSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A ++ALL+VAG+ + EQL +LL++ P GL+L+E+ Y+ Sbjct: 6 AQLQALLYVAGDGGIKKEQLRDLLQLADPEIESLAKRLQEKLASDPDCGLQLLEINDEYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T E ++ VE + +S++ALE LAI+AYRQPITR EI+EIRGVNS GA++TL Sbjct: 66 LTTSWEVSDLVEAYFNKDLTKNISQSALEILAIVAYRQPITRIEIDEIRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGL++ G +D PG P LY TTD FL YFG KSL DLP Sbjct: 126 VWRGLVKAQGVKDAPGHPKLYVTTDYFLQYFGYKSLADLP 165 >gi|56478941|ref|YP_160530.1| putative transcriptional regulator,helix-turn-helix type [Azoarcus sp. EbN1] Length = 197 Score = 177 bits (450), Expect = 8e-44 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A PL++ L +L + P G ELV+VA G+R QT Sbjct: 12 VVEAALLAASAPLAVADLRQLFDPDPGADFIRRVLEDLRADWSDRGAELVQVASGWRFQT 71 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+IRGV +KTL Sbjct: 72 RPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDIRGVAVSPNVLKTLES 130 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 131 RGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 170 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 176 bits (449), Expect = 1e-43 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A E LLFV+GE L+L +L+ L E+ L ++E AG YR Sbjct: 1 ASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYR 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 + TK E+AE ++ KT LS++ALE L+IIAY+QP+TR EI+ +RGVNS G + TL Sbjct: 61 MATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+VG+ + PGRP+LY TTD FLDY G+ LD+LP + Sbjct: 121 RAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEI 162 >gi|48853479|ref|ZP_00307649.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Cytophaga hutchinsonii] Length = 237 Score = 176 bits (449), Expect = 1e-43 Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 6/162 (3%) Query: 3 IEALLFVAGEPLSLEQLAELL------EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 IE+++F A +P+ +++ + + EIP +++++ GG Sbjct: 8 IESIIFCATDPVKPDEIRQCMSEMFEAEIPLDDILNAVDDLLSKYEDETFPFQILQIGGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 Y+ TKP Y + LK + +LS +ALET+AI+AY+QPIT+A+IE+IRGVN D A++ Sbjct: 68 YQFMTKPAYQSSLGIFLKQKSKKRLSTSALETMAIVAYKQPITKAQIEQIRGVNCDYAMQ 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 LLE+ L+E G+ D GRP LYGT+ +FL+YFG+ ++ DLP Sbjct: 128 KLLEKELVEIQGKSDGVGRPILYGTSQKFLEYFGINNIKDLP 169 >gi|46399485|emb|CAF22934.1| conserved hypothetical protein [Parachlamydia sp. UWE25] Length = 234 Score = 176 bits (449), Expect = 1e-43 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 70 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 129 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 130 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 189 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L + Sbjct: 190 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKI 232 >gi|22956660|ref|ZP_00004408.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodobacter sphaeroides 2.4.1] Length = 211 Score = 176 bits (448), Expect = 1e-43 Identities = 63/160 (39%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + +P+++ +L L P G++L V + +T Sbjct: 21 MVEAILFASADPVTVAELQARL---PHGCDPAEALTHLRRRYEGRGVQLARVGDAWAFRT 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + +T KLSRAA+ETLAI+AY QP+TRAEIEEIRGV S G I LLE Sbjct: 78 AADLGFLMRK--ETVEQKKLSRAAIETLAIVAYHQPVTRAEIEEIRGVAVSRGTIDQLLE 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RR PGRP + T+ FLD+FGL+S DLP + Sbjct: 136 LEWIRFGRRRMTPGRPVTFVVTESFLDHFGLESARDLPGI 175 >gi|28378542|ref|NP_785434.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] Length = 199 Score = 176 bits (448), Expect = 1e-43 Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 6 QIEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRL 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 66 ATKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLV 125 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 126 LRQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 166 >gi|21673313|ref|NP_661378.1| hypothetical protein CT0478 [Chlorobium tepidum TLS] Length = 209 Score = 176 bits (448), Expect = 1e-43 Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EAL+F + EP++L+ L+++ + P + +AGGYR Sbjct: 12 LEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE+A+ V +LL +LSR+ LE LA++A+ QP+T+ EI++IRG + D +I LL Sbjct: 72 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLA 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLIE GR D PGRP YGTT+ FLD F L SL DLP L Sbjct: 132 RGLIEVRGRADSPGRPLQYGTTEVFLDLFHLPSLKDLPKL 171 >gi|46908184|ref|YP_014573.1| conserved hypothetical protein TIGR00281 [Listeria monocytogenes str. 4b F2365] Length = 198 Score = 176 bits (448), Expect = 2e-43 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 8 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 68 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 128 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 169 >gi|68551946|ref|ZP_00591339.1| Conserved hypothetical protein 281 [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 176 bits (447), Expect = 2e-43 Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E + + ++L + + +A GYR Sbjct: 12 IEAVIFASEEAVPASFICQVLESGVSAAEVDDAVNALNAFYTQSGRAFRIESIAEGYRFM 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T P A + ++L + KLS++ LE LA+IAY+QP++R++I+ IRGV+ D A+ LLE Sbjct: 72 TIPALAPLLRKMLAPKIRRKLSQSVLEVLAVIAYQQPVSRSDIQHIRGVSPDYAVNKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR G+P LYGTT EFLD+F L SL DLP L Sbjct: 132 RGLIDVRGRAASVGKPLLYGTTKEFLDFFHLSSLKDLPKL 171 >DUF387_Q84FE4_81-236_PF04079.5 Length = 156 Score = 176 bits (447), Expect = 2e-43 Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IE++LFVA PLS+++L I G+ L EVAGG++ +T Sbjct: 2 VIESVLFVAERPLSVDELYMATGIERELIAEALNQLSGIHRDGISGIVLYEVAGGWQFRT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P EYV R L +P +L+RAA+ETLAIIAYRQP+TR EIE+I GV+ IK L++R Sbjct: 62 DPHSGEYVRRYL-RVKPQRLTRAAVETLAIIAYRQPVTRPEIEDIPGVDCGAVIKALMDR 120 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 L++ +G+R+ GRP LYGT+ EFL++F LK L L Sbjct: 121 KLVKILGKREEVGRPILYGTSREFLEFFALKDLSAL 156 >gi|71837246|ref|ZP_00677012.1| Conserved hypothetical protein 281 [Pelobacter propionicus DSM 2379] Length = 206 Score = 176 bits (447), Expect = 2e-43 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A++E+++F A PLSL++L ELL E G +LV +AGG++ Sbjct: 5 AVVESVIFSADTPLSLDKLCELLPEYERGAIRDVLRDLVSLHEVRNGGFQLVNIAGGWQF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T +YV R +K + K S+++LETLAI+AYRQP+TRAEIE +RGV+ G ++TLL Sbjct: 65 RTPSSLQQYVVRNVKAKS-AKFSQSSLETLAIVAYRQPVTRAEIEYLRGVDCGGVLRTLL 123 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ER LI +G++D+PGRP +YGT+ EFL+ FGLK L LP L Sbjct: 124 ERKLIRILGKKDIPGRPLIYGTSREFLEVFGLKDLKSLPTL 164 >gi|69298312|ref|ZP_00620592.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 226 Score = 176 bits (447), Expect = 2e-43 Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+++ L + P G+ +V+V + ++T Sbjct: 32 MVEAVLFASAEPVTVRDLIARM---PHGCRPSEALEHLRKRYEGRGVRVVQVGEAWAMRT 88 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ +++ +T KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I LLE Sbjct: 89 APDLGYLMQK--ETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLE 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I R+ PGRP + T FLD+FGL+S DLP L Sbjct: 147 MEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESARDLPGL 186 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 175 bits (446), Expect = 2e-43 Identities = 79/157 (50%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRLQ 60 IEALLFVAGE LSL Q+AELL + P L L+E A Y+L Sbjct: 3 IEALLFVAGEDGLSLRQMAELLSLTPSALIQQLEKLAKRYEEDDDSSLLLLETAQTYKLV 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK Y + K LSRA+LE L+IIAY+QPITR EI++IRGVNS GAI L+ Sbjct: 63 TKDSYMTLLRDYAKAPINQSLSRASLEVLSIIAYKQPITRIEIDDIRGVNSSGAITRLIA 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 GLI+E G+++V GRP LY TT+ FLDY G+ LDDL Sbjct: 123 FGLIKEAGKKEVLGRPNLYETTNYFLDYMGINQLDDL 159 >gi|68194580|gb|EAN09071.1| Conserved hypothetical protein 281 [Enterococcus faecium DO] Length = 189 Score = 175 bits (445), Expect = 3e-43 Identities = 76/159 (47%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 3 IEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYRLQ 60 +EALLF+ GE +S E+L+ LL + L + E Y L Sbjct: 7 LEALLFIVGEEGISNEELSGLLNLSEAEVTSLVKELKESYTQNSHSALHIFETESHYVLT 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TK E A ++R + LS+AA+ETLAIIAY+QPITRAEIE+IRGV GA++ L Sbjct: 67 TKKELAPLLKRYAQGTSNT-LSQAAVETLAIIAYKQPITRAEIEQIRGVQVSGAVQRLAA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LIEE GR + PGRP LYGTT FLDYFGLKSL++LP Sbjct: 126 HKLIEEKGRVEGPGRPILYGTTGYFLDYFGLKSLEELPD 164 >DUF387_Q5NZ85_11-170_PF04079.5 Length = 160 Score = 175 bits (445), Expect = 3e-43 Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA L A PL++ L +L + P G ELV+VA G+R QT Sbjct: 2 VVEAALLAASAPLAVADLRQLFDPDPGADFIRRVLEDLRADWSDRGAELVQVASGWRFQT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLE 120 +PEY +++RL K E+PP+ SRA LETL+IIAYRQP+TR +IE+IRGV +KTL Sbjct: 62 RPEYQVFLDRL-KQEKPPRYSRAVLETLSIIAYRQPVTRGDIEDIRGVAVSPNVLKTLES 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RG I+ VG RD PGRPAL+ TT FLD GL+SL +LP L Sbjct: 121 RGWIDIVGHRDTPGRPALFATTRRFLDDLGLRSLTELPAL 160 >DUF387_SCPB_5-166_PF04079.5 Length = 162 Score = 175 bits (444), Expect = 4e-43 Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IE LLFVAG E +++ ++ P L ++ A YRL Sbjct: 2 QIEGLLFVAGDEGITVAEIEHATGFAKPAITTMLTQLATKYQADPDSALMILSTANTYRL 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK A ++R + LS+A+LE LAIIAYRQP+TR EI+EIRGV+S I+ L+ Sbjct: 62 ATKAAVAPVLKRYFEAPLTTSLSQASLEVLAIIAYRQPLTRIEIDEIRGVHSGSTIQKLV 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R L+ E GR PGRP LYGTT+ FLDYFGLKSLDDLP + Sbjct: 122 LRQLVTETGRLSEPGRPILYGTTELFLDYFGLKSLDDLPAI 162 >gi|5738485|emb|CAB52833.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 223 Score = 175 bits (444), Expect = 5e-43 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 30 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 89 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 90 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 149 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 150 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 186 >gi|67934840|ref|ZP_00527866.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides DSM 266] Length = 202 Score = 175 bits (444), Expect = 5e-43 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG--LELVEVAGGYRL 59 +EAL+F + E ++L + ++ G + ++AGGYR Sbjct: 12 QVEALVFASEEAVTLSTIRHIIGCSLGLAGLDAIVEQLNSEYASSGRSFRIRKIAGGYRF 71 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 ++ E+ +++L+ + ++S++ LE LA+IAY+QP+T+AEI ++RGV+ D ++ LL Sbjct: 72 FSESEFDALLKKLMAPKIRKRVSQSMLEVLAVIAYQQPVTKAEILQVRGVSPDYSLDRLL 131 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG IE GR D PG+P YGTT EFLD F L SL DLP L Sbjct: 132 ERGFIEVRGRADSPGKPLQYGTTKEFLDLFSLFSLRDLPKL 172 >gi|10174178|dbj|BAB05280.1| BH1561 [Bacillus halodurans C-125] Length = 197 Score = 174 bits (443), Expect = 5e-43 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE +LFV G E ++LE+L +LLE+ GL + EVA +RL Sbjct: 8 AAIEGILFVRGDEGVTLEELCDLLELSTDVVYAALEELRLSYTDEARGLRIEEVAHAFRL 67 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+RGV S+ AI+TL Sbjct: 68 STKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEVRGVKSEKAIQTLT 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 128 SRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 168 >gi|68183351|ref|ZP_00556327.1| Conserved hypothetical protein 281 [Jannaschia sp. CCS1] Length = 228 Score = 174 bits (442), Expect = 7e-43 Identities = 65/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + +P+SL ++ + P G+++ +V + +T Sbjct: 24 MVEALLFASADPVSLAEMEARM---PHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRT 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + R KLSRAA+ETLAIIAY QP+TRAEIEEIRGV+ S G I L+E Sbjct: 81 AADLGFLMAR--DQVEQRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIE 138 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+ RR PGRP Y T FLD+FGL+S DLP L Sbjct: 139 LDWIKFGRRRMTPGRPVTYVVTQLFLDHFGLESARDLPGL 178 >DUF387_Q5TXY6_13-173_PF04079.5 Length = 161 Score = 174 bits (442), Expect = 8e-43 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 2 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 62 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 121 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 161 >gi|48851223|ref|ZP_00305465.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Novosphingobium aromaticivorans DSM 12444] Length = 215 Score = 173 bits (441), Expect = 9e-43 Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 7/159 (4%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA LF A +PL+ ++++ L G+ LVE G + QT Sbjct: 11 VEATLFAAEQPLTEQEISAHLG----GVDLKRTLQHLSDLYADRGVHLVERGGRWHFQTA 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 P+ A + R + E P +LSRAA E LAIIAY +P++RAEIE IRGV + G + LLE Sbjct: 67 PDLAHLLRR--EKEEPRRLSRAATEALAIIAYHEPVSRAEIEAIRGVQTAKGTLDVLLEA 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I GRR+VPGRP +Y TT +FL +FGL+S DLP + Sbjct: 125 GWIRIAGRREVPGRPTIYATTPDFLSHFGLESRRDLPGI 163 >DUF387_Q9S231_28-186_PF04079.5 Length = 159 Score = 173 bits (441), Expect = 1e-42 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L V EP + E+LA++L+ P G EL +AGG+R ++ Sbjct: 3 LEAVLMVVDEPATEERLAKILQRPRRRIADALRELADEYAVQGRGFELRLIAGGWRFYSR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 PEYA VE + + +L++AALETLA++AYRQP++R + +RGVN DG ++TLL+RG Sbjct: 63 PEYAAAVEGFVLDGQHARLTQAALETLAVVAYRQPVSRGRVSAVRGVNCDGVMRTLLQRG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+EE G G LY TT+ FL+ GL+ LD+LP L Sbjct: 123 LVEEAGTEPETG-AILYVTTNYFLERMGLRGLDELPEL 159 >gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycobacterium tuberculosis H37Rv] Length = 231 Score = 173 bits (441), Expect = 1e-42 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 31 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 90 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 91 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 150 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G + TT+ FL+ GL SL +LP + Sbjct: 151 GLITEVGTDADTG-AVTFATTELFLERLGLTSLSELPDI 188 >DUF387_O05669_30-188_PF04079.5 Length = 159 Score = 173 bits (441), Expect = 1e-42 Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P+++E LA E P G++L A G+RL T Sbjct: 2 VLEALLLVVDTPVTVEALAAAAEQPVDRIAAKLRLMVNEFAERDSGIDLRHSAEGWRLYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + YA YVERLL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARYAPYVERLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G ++ TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGPEPDSG-AVMFATTELFLERLGLTSLAELPDI 159 >DUF387_SCPB_8-169_PF04079.5 Length = 162 Score = 173 bits (440), Expect = 1e-42 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 ++E+LLF AG+ LS EQL E++EI GL L+E+AG ++ Sbjct: 1 GVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLELLSDRYNGSADRGLILLELAGTFQ 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK +AE++ +L++ LS+A+LETLAIIAYRQP+TR E++E+RGV +DG I+TL Sbjct: 61 LATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIAYRQPVTRMEVDEVRGVQTDGPIRTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + +GL+ + GR D GR LY TT EFLD FGL SL+DLP L Sbjct: 121 VAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGLNSLEDLPKL 162 >gi|48764200|ref|ZP_00268752.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Rhodospirillum rubrum] Length = 239 Score = 173 bits (440), Expect = 1e-42 Identities = 76/159 (47%), Positives = 93/159 (58%), Gaps = 6/159 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +IEALLF A PLS+ LA L P G+ LVE G + +T Sbjct: 23 LIEALLFAAPTPLSVADLASRL---PAGADVAALLGALADHYRQRGVVLVESGGRWAFRT 79 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + L+T P +LSRAA+ETLAIIAY QP+TRA+IEEIRGV S G + LLE Sbjct: 80 AADLAGQLR--LETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLE 137 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I GRR GRP +GTT+ FLD+FGL S+DDLP Sbjct: 138 AGWIHPCGRRQTAGRPLTWGTTEGFLDHFGLGSVDDLPG 176 >gi|55246986|gb|EAL42241.1| ENSANGP00000026231 [Anopheles gambiae str. PEST] Length = 188 Score = 173 bits (439), Expect = 1e-42 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAE--LLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEA LFVAG PL++ +L L + P G+EL EVA G+R Sbjct: 14 LIEAALFVAGRPLNVSELKSSVLADYPVTSRYVQLLLAELRQDYSERGVELKEVASGWRF 73 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 Q + EYAE + RL +ER P+ SRA +ETL +IAYRQPITRAEIE IRGV S + TL Sbjct: 74 QARQEYAEELSRLW-SERAPRYSRAVMETLTLIAYRQPITRAEIEAIRGVAVSSQIVNTL 132 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ERG + +G R V GRP L TT EFLDYF L+SL+ LP L Sbjct: 133 KERGWVRSIGTR-VVGRPELLATTREFLDYFNLQSLEQLPEL 173 >gi|61102014|ref|ZP_00377468.1| segregation and condensation protein B [Erythrobacter litoralis HTCC2594] Length = 230 Score = 173 bits (439), Expect = 2e-42 Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA LF + +P+ +E LA L G+ LVE + + QT Sbjct: 12 IEATLFASEDPMGVESLATHLG-DAAASDVRDALKNLAKHYEERGVHLVERSRRWHFQTA 70 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLER 121 P+ A + R + E+ +LSRAA E LAI+AY +P++RAEIE IRGV + G + L+E Sbjct: 71 PDLAHLLRR--EKEQVRRLSRAATEVLAIVAYHEPVSRAEIEAIRGVQTAKGTLDVLMEA 128 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR+VPGRP +Y TT EFL +FGL S DLP L Sbjct: 129 GWVRAAGRREVPGRPVIYATTPEFLQHFGLASRKDLPGL 167 >gi|46198746|ref|YP_004413.1| hypothetical cytosolic protein [Thermus thermophilus HB27] Length = 177 Score = 173 bits (439), Expect = 2e-42 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 5 ALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPE 64 A+LF AG P++L++L L P G+ L VAGG+RL P+ Sbjct: 13 AVLFAAGRPVALKEL-RALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPK 71 Query: 65 YAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLI 124 E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLERGL+ Sbjct: 72 ALEAVERVLK-PSPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLV 130 Query: 125 EEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 131 RVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 166 >gi|50084074|ref|YP_045584.1| hypothetical protein ACIAD0862 [Acinetobacter sp. ADP1] Length = 196 Score = 172 bits (438), Expect = 2e-42 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + P+SL +L E + +EL+E A G+R Q Sbjct: 21 QIEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQV 80 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV N+ ++ L E Sbjct: 81 RSKYRNMIAQVW-PERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFE 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 140 WNWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 179 >DUF387_SCPB_8-168_PF04079.5 Length = 161 Score = 172 bits (438), Expect = 2e-42 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IE +LFV G E ++LE+L +LLE+ GL + EVA +RL Sbjct: 1 AAIEGILFVRGDEGVTLEELCDLLELSTDVVYAALEELRLSYTDEARGLRIEEVAHAFRL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TKPE A Y ++L + LS+AALETLAIIAYRQPITR E++E+RGV S+ AI+TL Sbjct: 61 STKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDEVRGVKSEKAIQTLT 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 R LI+EVGR GRP LYGTT +FLD+FGLKSL +LPPL Sbjct: 121 SRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPL 161 >gi|48865009|ref|ZP_00318876.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Oenococcus oeni PSU-1] Length = 196 Score = 172 bits (438), Expect = 2e-42 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 A + +L+FV+G+ + L+ ++++ ++LVE YR Sbjct: 8 AQLFSLVFVSGDDGIDLQSISKITGFDRSAVQIDLESLSNRLEEDQQNPIKLVENDQVYR 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TK ++A +++ +T LS+A+LETL IIAY+QP+TR E+++IRGVNS GAI L Sbjct: 68 LVTKSKFAPLLKKYYQTPVANSLSKASLETLTIIAYKQPVTRIEVDKIRGVNSSGAISRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + R LI+E GR+ GRP LY TT+ FLDYFGLK +DDLP L Sbjct: 128 VSRELIQESGRKAEVGRPLLYTTTNFFLDYFGLKKIDDLPEL 169 >gi|58337260|ref|YP_193845.1| hypothetical protein LBA0962 [Lactobacillus acidophilus NCFM] Length = 197 Score = 172 bits (438), Expect = 2e-42 Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A +EALL+ AG+ + L +LLE+ G++++ +A Y+ Sbjct: 6 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADELEKKLSTDTNSGIQIIHIAHTYK 65 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRGVNS GA++TL Sbjct: 66 LTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRGVNSSGALQTL 125 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 126 IWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 165 >DUF387_Q5SK60_9-166_PF04079.5 Length = 158 Score = 172 bits (438), Expect = 2e-42 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 2/156 (1%) Query: 5 ALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPE 64 A+LF AG P++L++L L P G+ L VAGG+RL P+ Sbjct: 5 AVLFAAGRPVALKEL-RALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPK 63 Query: 65 YAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLI 124 E VER+LK PP+LSRAALE LA++AY QP+TRAE+E +RG +G +++LLERGL+ Sbjct: 64 ALEAVERVLKP-SPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLV 122 Query: 125 EEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 VG ++ PGRP LYGTT+ FL+ FGL+SL+DLPPL Sbjct: 123 RVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPL 158 >DUF387_Q74C44_6-165_PF04079.5 Length = 160 Score = 172 bits (438), Expect = 2e-42 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 1 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 61 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 119 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 120 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 160 >DUF387_Q5FKG0_6-167_PF04079.5 Length = 162 Score = 172 bits (437), Expect = 3e-42 Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR 58 A +EALL+ AG+ + L +LLE+ G++++ +A Y+ Sbjct: 1 ANLEALLYAAGDNGIEETHLIDLLEVNKEELSEIADELEKKLSTDTNSGIQIIHIAHTYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T P+ A+ +E+ + + LS++ALE LAIIAYRQPITR EI++IRGVNS GA++TL Sbjct: 61 LTTSPQTAKVIEKYFQKDLTKNLSQSALEILAIIAYRQPITRVEIDDIRGVNSSGALQTL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 + RGLIE G +D PG P LY T+D FL YF +SL DLP Sbjct: 121 IWRGLIETNGTKDAPGHPKLYVTSDYFLQYFNYQSLADLP 160 >gi|41407510|ref|NP_960346.1| hypothetical protein MAP1412 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 235 Score = 172 bits (437), Expect = 3e-42 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 34 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 93 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 94 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 153 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 154 RGLITEAGVDEDTG-ATTFATTDLFLERLGLTSLADLPDI 192 >DUF387_Q6FDU6_20-179_PF04079.5 Length = 160 Score = 171 bits (435), Expect = 4e-42 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + P+SL +L E + +EL+E A G+R Q Sbjct: 2 QIEAILFASDVPISLARLKEAFQNQYNKQQLRHFLQQLAVLQHGRSIELIETAQGFRFQV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + +Y + ++ ERP KLS + LET+A+IAY QP+TRA+IE+IRGV N+ ++ L E Sbjct: 62 RSKYRNMIAQVW-PERPTKLSPSLLETIAVIAYHQPVTRADIEQIRGVSNNSQILRMLFE 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I+E G RD+PGRPAL TT +FL+ FGL SL LPPL Sbjct: 121 WNWIKESGFRDLPGRPALLITTPQFLNAFGLVSLGQLPPL 160 >gi|39983818|gb|AAR35208.1| conserved hypothetical protein TIGR00281 [Geobacter sulfurreducens PCA] Length = 195 Score = 171 bits (435), Expect = 5e-42 Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +++E+LLFV+ PLSL++L LLE G+ L EV GG++ Sbjct: 6 SLVESLLFVSETPLSLDRLCSLLEEFDRAAIREALDRLLERYGGEGRGIILAEVGGGFQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T + + RL K RP + S++ALETLAIIAYRQP+TRAEIE +RGV+S G +KTLL Sbjct: 66 RTPAGNGDVIRRLTKA-RPARFSQSALETLAIIAYRQPVTRAEIEYLRGVDSGGVLKTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G+RD+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKRDIPGKPLIYGTTREFLELFALKDLKSLPSL 165 >gi|23493398|dbj|BAC18368.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 187 Score = 171 bits (434), Expect = 6e-42 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V P+ LA + + G +L E GG+RL Sbjct: 15 SRIESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLY 74 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 75 TRPDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQM 134 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ EV G Y TT FL+ G+ SLD LP L Sbjct: 135 RGLVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 173 >DUF387_Q6N5X0_36-191_PF04079.5 Length = 156 Score = 171 bits (434), Expect = 6e-42 Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV +A + +T Sbjct: 2 LLEALLFASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + A + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE Sbjct: 59 ASDLAWLMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G ++ GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 117 TGWVKPRGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 156 >gi|68229668|ref|ZP_00568860.1| Conserved hypothetical protein 281 [Frankia sp. EAN1pec] Length = 214 Score = 171 bits (434), Expect = 6e-42 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A++EA+L VA P+ + + A L+IP G L V G+RL Sbjct: 64 ALVEAVLTVAENPVGVAEFATALDIPARRVEALLAELAAQYERDGRGFRLRHVGRGWRLY 123 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T E A +VER + + +LS+AALETLAI+AY+QP++R I +RGV++DG I+TL Sbjct: 124 TADECAPWVERFVLAGQSARLSQAALETLAIVAYQQPVSRGRISAVRGVSADGVIRTLTA 183 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 R L+EE G G LY TTD FL+ GL+ Sbjct: 184 RNLVEECGHDHESG-AILYRTTDYFLERMGLR 214 >DUF387_Q89KZ6_34-189_PF04079.5 Length = 156 Score = 170 bits (433), Expect = 7e-42 Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALLF + EPL LA+ + P G+ LV VA + +T Sbjct: 2 LLEALLFASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLE 120 + A + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE Sbjct: 59 AGDLAWLMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 117 TGWIKPRGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 156 >gi|71542095|ref|ZP_00663763.1| Conserved hypothetical protein 281 [Syntrophomonas wolfei str. Goettingen] Length = 171 Score = 170 bits (433), Expect = 7e-42 Identities = 75/161 (46%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG-LELVEVAGGYRL 59 A +EA+LFV + +++L E+L+IP G L++VE+ GGY L Sbjct: 9 AAVEAVLFVRAGRVGMDELVEILDIPLLELKEILQEMILEYNNNIRGGLQIVELDGGYLL 68 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+P Y++ + R ++ + +LS AAL+TLAI+AYRQPITR EIE+IRGV SD + TLL Sbjct: 69 CTRPAYSDILAR-MEKPQKKRLSAAALDTLAIVAYRQPITRLEIEQIRGVKSDRIVNTLL 127 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+GLI+E G + V G+P LY TT+EFL FGL +L +LP L Sbjct: 128 EKGLIQEAGHKAVLGKPILYATTEEFLKVFGLTNLKELPDL 168 >DUF387_O33209_30-188_PF04079.5 Length = 159 Score = 170 bits (433), Expect = 9e-42 Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EALL V P++ + LA E P G++L + G+R+ T Sbjct: 2 VLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYT 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + +A YVE+LL KL+RAALETLA++AYRQP+TRA + +RGVN D ++TLL R Sbjct: 62 RARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLAR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI EVG G + TT+ FL+ GL SL +LP + Sbjct: 122 GLITEVGTDADTG-AVTFATTELFLERLGLTSLSELPDI 159 >DUF387_Q7ZAN2_15-173_PF04079.5 Length = 159 Score = 170 bits (433), Expect = 9e-42 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V P+ LA + + G +L E GG+RL Sbjct: 1 SRIESILLVVDTPVPASTLAAAVGMDTAGVEAILTEIAGEFTRRGSGFDLREADGGWRLY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+P+ A VE LL +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 61 TRPDNAAVVEALLLDGAQSRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQM 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL+ EV G Y TT FL+ G+ SLD LP L Sbjct: 121 RGLVAEVDVEPATG-AHRYATTALFLELLGIDSLDRLPDL 159 >DUF387_Q6MER5_69-232_PF04079.5 Length = 164 Score = 170 bits (431), Expect = 1e-41 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 4/163 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLE----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +IEALLF + +PL L ++ E+ + + P +L E++ GY Sbjct: 2 VIEALLFTSSDPLPLSKIREITDTLYPLRPKQLRQIIDSLRQEFIAHQRAFKLEEISQGY 61 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L+T EYA Y++ L + +R K+S AA E LAI+AYRQPITR +I+ IRGV+S G + Sbjct: 62 VLRTHEEYAPYLDILHRQKRTEKISCAATEVLAIVAYRQPITRPQIDAIRGVDSSGILSQ 121 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ER LIE VG+ + PGRP+LYGTT EFL ++GLK L +L + Sbjct: 122 LIERQLIEMVGKLEAPGRPSLYGTTKEFLKHYGLKDLSELEKI 164 >DUF387_Q740D9_34-192_PF04079.5 Length = 159 Score = 169 bits (430), Expect = 2e-41 Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +++EALL V P++ E LA + P G++L + + G+R+ Sbjct: 1 SVLEALLLVVDTPVTAEALAAATQQPVYRIATKLQEMADELTARDSGIDLRKTSEGWRMY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ +A YVE+LL KL+RAALETLA++AYRQP+ RA + +RGVN D ++TLL Sbjct: 61 TRARFAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVARARVSAVRGVNVDAVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G + G + TTD FL+ GL SL DLP + Sbjct: 121 RGLITEAGVDEDTG-ATTFATTDLFLERLGLTSLADLPDI 159 >gi|23465934|ref|NP_696537.1| hypothetical protein BL1372 [Bifidobacterium longum NCC2705] Length = 238 Score = 169 bits (429), Expect = 2e-41 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX------GLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 52 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 111 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 112 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 171 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G R AL T++ FLD GLKSLD+LP L Sbjct: 172 IRSLTVRGLIKEDGVDP-ESRAALLVTSEFFLDQMGLKSLDELPSL 216 >gi|69934528|ref|ZP_00629606.1| Conserved hypothetical protein 281 [Paracoccus denitrificans PD1222] Length = 221 Score = 169 bits (429), Expect = 3e-41 Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + EP+S ++A L P G++L V + +T Sbjct: 25 MVEAILFASAEPMSQREIAARL---PAGCDVGEAVQALRARYEGRGVQLARVGDAWAFRT 81 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + ++ + +LSRAA ETLAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 82 AADLGFLMQESV--VESRRLSRAATETLAIIAYHQPVTRAEIEEIRGVAVSRGTLDQLIE 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + RR PGRP + T+ FLD+FGL+S DLP L Sbjct: 140 LDWVRIGRRRQTPGRPVTFVVTEAFLDHFGLESARDLPGL 179 >gi|67938727|ref|ZP_00531248.1| Conserved hypothetical protein 281 [Chlorobium phaeobacteroides BS1] Length = 201 Score = 168 bits (427), Expect = 4e-41 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 3 IEALLFVAGEPLSLEQLAELL--EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA++F + E +S + + ++L E+ + +AGG+R Sbjct: 12 IEAVIFASDEAVSAQIILQVLAEELSAEDIDAGVESLNASYASTGRSFRIARIAGGFRFL 71 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T ++++L + KLS++ LE LA+IAY+QP TR EI+++RGV+ D AI LLE Sbjct: 72 TLGMLEPTLKKMLAPKIQRKLSQSVLEVLAVIAYQQPATRGEIQQVRGVSPDYAINKLLE 131 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI+ GR + PG+P +YGTT EFLD+F + SL DLP L Sbjct: 132 RGLIDVRGRAEKPGKPLIYGTTKEFLDFFNITSLKDLPKL 171 >DUF387_SCPB_106-268_PF04079.5 Length = 163 Score = 168 bits (427), Expect = 4e-41 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 1 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 61 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 121 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 163 >gi|31544606|ref|NP_853184.1| hypothetical protein MGA_0035 [Mycoplasma gallisepticum R] Length = 291 Score = 168 bits (427), Expect = 4e-41 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 AII+A L+VAG ++L++L ++L GL + G Y Sbjct: 106 AIIQAALYVAGRNGMTLQELNKILPKIHQDQLFKELEEMIYSYDQNLNFGLTIKNYGGRY 165 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 ++ TK + ++R + L+++ +E LAI+AY QP TR I EIRGV+S + Sbjct: 166 KILTKAAVKKDMQRYVSERFKNPLNKSLMEVLAIVAYNQPCTRVRINEIRGVDSLSLVDN 225 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LLE+GLI EVGR D PGRP LY +++F D FG++S+DDLP + Sbjct: 226 LLEKGLIVEVGRADTPGRPFLYNVSEKFFDLFGIESIDDLPQI 268 >DUF387_Q5YY85_27-185_PF04079.5 Length = 159 Score = 168 bits (426), Expect = 5e-41 Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA+L V P +EQLA L+ G++L V G+R Sbjct: 1 SALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL Sbjct: 61 TRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLA 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI E G LY TT+ FL+ GL SL DLPPL Sbjct: 121 RGLIAEAGVDPET-NGTLYRTTELFLERIGLASLSDLPPL 159 >gi|1674231|gb|AAB96183.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] Length = 208 Score = 168 bits (426), Expect = 6e-41 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 24 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 83 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 84 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 143 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 144 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPK 185 >gi|73662567|ref|YP_301348.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 182 Score = 167 bits (424), Expect = 8e-41 Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+EALL+ AG E L +QL E+LEI P GL + Y L Sbjct: 7 GILEALLYTAGDEGLDQQQLLEILEIEPTTLTELIEAYDSP------GLTIQHYGNTYVL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E ++Y+E+L++ + KLS+AA+E+L+IIAY QP++R++IE IRG+NSDGA+KTL+ Sbjct: 61 TTKKEASDYIEQLIEQKSKMKLSQAAMESLSIIAYNQPLSRSDIELIRGINSDGAVKTLI 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E + + R TT+ FL+ FG++ LDDLP Sbjct: 121 ARGLVEA--KEEADSRSHQLYTTELFLNVFGIEHLDDLP 157 >DUF387_SCPB_24-186_PF04079.5 Length = 163 Score = 165 bits (419), Expect = 3e-40 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV+GE L+L +L +L G+E+ + + Sbjct: 1 AAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFGHSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 RL TK E +++ R L + L+ +E LAIIAY QP TR I EIRG +S + Sbjct: 61 RLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LLE+ LI E+GR+D PGRP +Y + +F D FG+ SLD+LP Sbjct: 121 LLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSLDELPK 162 >DUF387_Q8G4K8_52-216_PF04079.5 Length = 165 Score = 165 bits (419), Expect = 4e-40 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 7/166 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX------GLELVEVA 54 A +EA+L VA +P + +LA +L + G EL A Sbjct: 1 ACLEAILMVADQPQTATELARILALDRNTVEEALQALHDDYEGDESRGVRPRGFELRRTA 60 Query: 55 GGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA 114 G++ ++ + V + + +LS+AALE LAI+AYRQP+TRA++ IRGVNSDG Sbjct: 61 RGWQFASRAAFEPVVSSFVTDGQTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGV 120 Query: 115 IKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I++L RGLI+E G R AL T++ FLD GLKSLD+LP L Sbjct: 121 IRSLTVRGLIKEDGVDP-ESRAALLVTSEFFLDQMGLKSLDELPSL 165 >gi|71039110|gb|AAZ19418.1| posible transcriptinal regulator [Psychrobacter arcticum 273-4] Length = 183 Score = 165 bits (418), Expect = 4e-40 Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 4/160 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IE LL + PL+ L + L + L L A GYRLQ Sbjct: 20 QIEVLLHASEVPLTANHLKKHLSLTTKTLEQALALLKQRLDLGV--LNLHHTASGYRLQI 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +RGV S ++ L + Sbjct: 78 ADSHSALIQSVF-PQRQERLSQALLETLSVIAYKQPVTRSDIEHVRGVTLSSTILRQLFD 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 137 KGWIEENGHKDTLGRPALLHTTPKFLDAFGLSHLDELPPM 176 >gi|68055523|ref|ZP_00539667.1| Prokaryotic chromosome segregation and condensation protein ScpB [Exiguobacterium sp. 255-15] Length = 190 Score = 165 bits (418), Expect = 4e-40 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IIE+LLFV G+ + L+++LEI L++VE G +++ Sbjct: 6 IIESLLFVVGDDGIDPRGLSQVLEISEAAAREQLHALQTTFEAEERVLQIVESGGVFKMV 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ E + YV+ + LSRAA+ETL IIAY+QP+TRA+IE IRGV ++ I TL Sbjct: 66 TRKEMSPYVQAYAGSLAEDSLSRAAMETLVIIAYKQPVTRADIEVIRGVKTERVIHTLSA 125 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 +GLI+E GR GR LY TTD FLD+FGL S+ Sbjct: 126 KGLIDEAGRAKGVGRAKLYKTTDHFLDHFGLNSI 159 >gi|13488307|ref|NP_085884.1| hypothetical protein mlr9362 [Mesorhizobium loti MAFF303099] Length = 229 Score = 165 bits (418), Expect = 5e-40 Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A +P++ E LA ++ +LV VAGG++ T Sbjct: 43 RVEATIFAASQPVTRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 99 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 100 RPAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLR 159 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 160 GAGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 199 >gi|42523454|ref|NP_968834.1| hypothetical protein Bd1977 [Bdellovibrio bacteriovorus HD100] Length = 488 Score = 164 bits (417), Expect = 6e-40 Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELL---EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L I G+ L EV GGY Sbjct: 104 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 163 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 164 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 222 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 223 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 265 >DUF387_Q981I4_42-200_PF04079.5 Length = 159 Score = 163 bits (415), Expect = 9e-40 Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A +P++ E LA ++ +LV VAGG++ T Sbjct: 2 RVEATIFAASQPVTRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 58 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + +R LS++ + L IAY QPITR E+ G S I L Sbjct: 59 RPAYADAIRSAAGGNDRAVHLSQSEVLVLMCIAYFQPITRTELSSFFGKEISRDFIGHLR 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT EFL FGL++L DLP Sbjct: 119 GAGLIASGPRSPTPGAPYTYVTTKEFLLEFGLETLRDLPD 158 >gi|62424883|ref|ZP_00380023.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Brevibacterium linens BL2] Length = 210 Score = 163 bits (415), Expect = 1e-39 Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX----GLELVEVAGG 56 A IEA+L ++ +S+ +LA L + G E+ VAGG Sbjct: 8 AGIEAVLMISDSAVSVTELATALGLDEDTVTDAIAELKADYDGGEDRRQRGFEIRLVAGG 67 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 +R+ ++ +Y E V+ L + + KLS+AALETLA+IAYRQPI+R I IRGV+ DG I+ Sbjct: 68 FRIFSRGDYHEIVKDFLTSGQSAKLSQAALETLAVIAYRQPISRPRIAAIRGVSVDGVIR 127 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 TLL RGLI E G ++ LY TT +FLD G+ S+DDLP + Sbjct: 128 TLLLRGLIVEAG-KEATTSALLYTTTHQFLDALGMNSIDDLPEI 170 >DUF387_Q8YGS3_23-178_PF04079.5 Length = 156 Score = 163 bits (415), Expect = 1e-39 Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 2 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ A + R +T + KLSRA +E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 59 APDLAFIMNR--ETVQQRKLSRATMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 117 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 156 >DUF387_SCPB_15-176_PF04079.5 Length = 162 Score = 163 bits (414), Expect = 1e-39 Identities = 67/161 (41%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V Y++ Sbjct: 2 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 62 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 122 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 162 >gi|15828587|ref|NP_325947.1| hypothetical protein MYPU_1160 [Mycoplasma pulmonis UAB CTIP] Length = 207 Score = 163 bits (414), Expect = 1e-39 Identities = 67/161 (41%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYRL 59 IIEAL++ G+ LS EQ+ E+ ++ G V V Y++ Sbjct: 16 IIEALMYFQGDQGLSPEQVKEVFDLEKDQEGKKLLNDFMEFYNAREGGTKVFVFGEIYKI 75 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T +YV +L+ R KLS+AA+E I+AY+QPIT++ I EIRGV SD + TLL Sbjct: 76 ATIEPLKDYVSKLVSIVRYQKLSKAAIEVAGIVAYKQPITKSMINEIRGVASDQVVNTLL 135 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + LIEEVG PG+P LYG T++F DYF +KSL +LP L Sbjct: 136 VKNLIEEVGISPTPGKPVLYGITNKFYDYFKIKSLQELPNL 176 >DUF387_Q98A15_35-195_PF04079.5 Length = 161 Score = 163 bits (414), Expect = 1e-39 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVPREMLARVVGKN---CNLDLVIDDIRTELAGRPYELVSVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + + +LS++ L IAY QPITR E+ G S I Sbjct: 58 TKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 117 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 118 VLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPD 160 >gi|13475179|ref|NP_106743.1| hypothetical protein mlr6199 [Mesorhizobium loti MAFF303099] Length = 240 Score = 163 bits (414), Expect = 1e-39 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVPREMLARVVGKN---CNLDLVIDDIRTELAGRPYELVSVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + + +LS++ L IAY QPITR E+ G S I Sbjct: 92 TKKVFGDVIHAAFGQQGADGSKELSQSEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 151 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 152 VLRAQELIASGPRSPRPGAPYTYVTTKNFLSQFGLDTLRQLPD 194 >gi|39935915|ref|NP_948191.1| hypothetical protein RPA2850 [Rhodopseudomonas palustris CGA009] Length = 432 Score = 163 bits (414), Expect = 1e-39 Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 43 FASPEPLDQAALAKRM---PEGVDVKVALKQLQEDYASRGVNLVRIANKWTFRTASDLAW 99 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEE 126 + R ++ KLSRAA+E LAIIAY QPITR EIEEIRGV S G + LLE G ++ Sbjct: 100 LMTR--ESTETRKLSRAAIEMLAIIAYHQPITRVEIEEIRGVATSKGTLDVLLETGWVKP 157 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 158 RGRRKTPGRPLTFGTTEAFLSQFSLESLTDLPGL 191 >DUF387_Q98P19_35-194_PF04079.5 Length = 160 Score = 163 bits (413), Expect = 2e-39 Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVPREVLARVVSKS---CNLDLVIDDIRAELAGRPYELVSVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 TK + + + T + +LS++ L IAY QPITR E+ G S I Sbjct: 58 TKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGV 117 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL++L LP Sbjct: 118 LRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPD 159 >DUF387_SCPB_4-165_PF04079.5 Length = 162 Score = 163 bits (413), Expect = 2e-39 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 2 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 62 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 121 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 122 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 162 >gi|47459311|ref|YP_016173.1| predicted transcriptional regulator [Mycoplasma mobile 163K] Length = 192 Score = 163 bits (413), Expect = 2e-39 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEAL+++ GE LS EQL ++L+ G+++ E Y+ Sbjct: 5 IIEALIYIQGEEGLSSEQLQKVLKSESISSARALLKVFKEKWNNEQHGIKVEEFNDVYKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T + +YV L+ + +LS AA+E I+AY+QPI++++I +IRGV S+ + TLL Sbjct: 65 ATIKDVKDYVSELVTIIKKQRLSNAAIEVAGIVAYKQPISKSQINKIRGVASEIVVNTLL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G+IEEVG PG P LYG T +F DYF +KSL +LP L Sbjct: 125 IKGIIEEVGIAQTPGNPILYGVTAKFYDYFKIKSLHELPNL 165 >gi|13488490|ref|NP_109497.1| hypothetical protein mll9646 [Mesorhizobium loti MAFF303099] Length = 225 Score = 163 bits (413), Expect = 2e-39 Identities = 52/162 (32%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVPREVLARVVSKS---CNLDLVIDDIRAELAGRPYELVSVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT--ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 TK + + + T + +LS++ L IAY QPITR E+ G S I Sbjct: 92 TKKAFGDIIHAAFGTAGKATKELSQSEALVLMCIAYFQPITRGELSAFFGKEVSRDLIGV 151 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL++L LP Sbjct: 152 LRGQELIASGPRSPKPGAPYTYVTTKTFLSQFGLETLRQLPD 193 >gi|7379654|emb|CAB84221.1| hypothetical protein NMA0951 [Neisseria meningitidis Z2491] Length = 200 Score = 162 bits (412), Expect = 2e-39 Identities = 68/163 (41%), Positives = 88/163 (53%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 9 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 68 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKT 117 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV I+T Sbjct: 69 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNVIQT 125 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L +RG IE +G RD G+PAL+ TT FL L L++LPPL Sbjct: 126 LQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLDGLEELPPL 168 >gi|68004555|ref|ZP_00536974.1| Conserved hypothetical protein 281 [Geobacter metallireducens GS-15] Length = 195 Score = 162 bits (412), Expect = 2e-39 Identities = 78/161 (48%), Positives = 107/161 (66%), Gaps = 2/161 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +I+E+LLFVA P++ ++L L+ G+ LVEVA GY+ Sbjct: 6 SIVESLLFVADAPMTFDRLCSFLDEFDRGDIREALGALQEEYGQEGRGVVLVEVASGYQF 65 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +T E A+Y+ RL KT RP K S++ALETLAIIAYRQP+TRAEIE +RGV+ G +KT+L Sbjct: 66 RTPVENADYLRRLTKT-RPVKFSQSALETLAIIAYRQPVTRAEIEYLRGVDCGGVLKTIL 124 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 E+ LI+ +G++D+PG+P +YGTT EFL+ F LK L LP L Sbjct: 125 EKKLIKILGKKDIPGKPLIYGTTREFLELFSLKDLRSLPTL 165 >gi|69928252|ref|ZP_00625413.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 248 Score = 162 bits (412), Expect = 2e-39 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 35 FASSEPLDQAALAKRM---PDGVDIKVALAQLQADYASRGVNLVRVANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAE+EEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETKRLSRAAIEMLAIIAYHQPVTRAELEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L+SL DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFTLESLGDLPGL 183 >gi|71363538|ref|ZP_00654182.1| Conserved hypothetical protein 281 [Psychrobacter cryohalolentis K5] Length = 186 Score = 162 bits (411), Expect = 3e-39 Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 4/160 (2%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IE LL + PL+ L + L + L L A GYRLQ Sbjct: 20 QIEVLLHASEAPLTTNHLKKHLFLTTNKLEQALELLKQRLNLGV--LSLHHTASGYRLQI 77 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 ++ ++ + +R +LS+A LETL++IAY+QP+TR++IE +RGV S ++ L + Sbjct: 78 ADSHSALIQNVF-PQRQERLSQALLETLSVIAYKQPVTRSDIEHVRGVTLSSNILRQLFD 136 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +G IEE G +D GRPAL TT +FLD FGL LD+LPP+ Sbjct: 137 KGWIEENGYKDTLGRPALLHTTSQFLDAFGLSHLDELPPM 176 >gi|68263552|emb|CAI37040.1| segregation and condensation protein B [Corynebacterium jeikeium K411] Length = 198 Score = 162 bits (411), Expect = 3e-39 Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-----IPPXXXXXXXXXXXXXXXXXXXGLELVEVAG 55 + +E+LL V+ E ++ +LA +L +P G EL E G Sbjct: 19 SRVESLLLVSDEAVTPTELARVLSNEEKAVPEAEVARTLHEIAAEYEARGNGFELREHEG 78 Query: 56 GYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 +RL T+ ++ VE L +LSRAALETLA++AYRQP+TR+++ +RGVN DG + Sbjct: 79 AFRLYTRRANSDVVEAKLLDGTQQRLSRAALETLAVVAYRQPVTRSQVAAVRGVNCDGVM 138 Query: 116 KTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +TL RGLI E G G LY TT+ FL+ G++SL++LP L Sbjct: 139 RTLSLRGLIAETG---EQGGAHLYSTTELFLEQIGIESLEELPDL 180 >gi|54023978|ref|YP_118220.1| hypothetical protein nfa20100 [Nocardia farcinica IFM 10152] Length = 225 Score = 162 bits (411), Expect = 3e-39 Identities = 67/156 (42%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA+L V P +EQLA L+ G++L V G+R Sbjct: 27 SALEAMLLVVDAPAPVEQLAAALDDTTERVEATLRQMSAELTARGSGIDLRFVGDGWRFY 86 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+ EYA YVER+L KL+RAALETLA++AYRQP+TR + +RGVN DG ++TLL Sbjct: 87 TRTEYAPYVERVLLDGARTKLTRAALETLAVVAYRQPVTRNRVSAVRGVNVDGVMRTLLA 146 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDD 156 RGLI E G LY TT+ FL+ GL SL D Sbjct: 147 RGLIAEAGVDPET-NGTLYRTTELFLERIGLASLSD 181 >gi|27379863|ref|NP_771392.1| hypothetical protein bll4752 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 162 bits (411), Expect = 3e-39 Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV VA + +T + A Sbjct: 41 FASSEPLDTATLAKRM---PDGVDVKAALEQLQADYASRGVNLVRVANKWTFRTAGDLAW 97 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 98 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 155 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT++FL F L+ L DLP L Sbjct: 156 RGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGL 189 >gi|32447601|emb|CAD79200.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 540 Score = 161 bits (409), Expect = 4e-39 Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 3 IEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L +A PL+ +LA L + G+ + +VAGG R+ T Sbjct: 167 IEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRMMT 226 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L++ Sbjct: 227 RSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLMQL 286 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 287 DLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 325 >gi|19552641|ref|NP_600643.1| predicted transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 192 Score = 161 bits (409), Expect = 5e-39 Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +E++L V P+S LA +L I G++L E A G+R Sbjct: 20 SRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYY 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 80 TRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQL 139 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 140 RGLVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 178 >gi|20803927|emb|CAD31505.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti] Length = 231 Score = 161 bits (408), Expect = 6e-39 Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP++ LA ++ ELV VAGG++ + Sbjct: 35 GRVEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHR 91 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + T E +LS+A L IAY QPITR E+ G S I Sbjct: 92 TKKIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 151 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 152 VLRGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLPE 194 >DUF387_Q6MLN0_104-265_PF04079.5 Length = 162 Score = 161 bits (408), Expect = 7e-39 Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 4/163 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELL---EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 +I+E++LF + P+SL L L I G+ L EV GGY Sbjct: 1 SIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGY 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 +L+TK + E+++R LK R KLS ALE L+I+AY+QP +AE++EIRGV S ++ Sbjct: 61 QLRTKIDNMEFLKRTLKA-RQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRA 119 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+E+ L+ G+ ++PGRP YGTT +FL+ FGL+SL +LP L Sbjct: 120 LMEKNLVCFEGKSELPGRPMQYGTTRKFLEIFGLRSLKELPTL 162 >gi|75675995|ref|YP_318416.1| chromosome segregation and condensation protein ScpB [Nitrobacter winogradskyi Nb-255] Length = 248 Score = 160 bits (407), Expect = 8e-39 Identities = 65/154 (42%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 8 FVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAE 67 F + EPL LA+ + P G+ LV +A + +T + A Sbjct: 35 FASSEPLDQSALAKRM---PDGVDIKSALAQLQADYASRGVNLVRIANKWTFRTAGDLAW 91 Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLERGLIEE 126 + R ++ +LSRAA+E LAIIAY QP+TRAEIEEIRGV S G + LLE G I+ Sbjct: 92 LMTR--ESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKP 149 Query: 127 VGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GRR PGRP +GTT+ FL F L++L DLP L Sbjct: 150 RGRRKTPGRPLTFGTTEAFLSQFSLENLGDLPGL 183 >gi|62289826|ref|YP_221619.1| conserved hypothetical protein TIGR00281 [Brucella abortus biovar 1 str. 9-941] Length = 241 Score = 160 bits (407), Expect = 8e-39 Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA++F + +P+ LAE L P G+ V+V G+ +T Sbjct: 35 IVEAIVFASSQPVCERALAERL---PANVDIAPVLNHLQKVYEGRGVHFVKVGSGWAFRT 91 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 P+ A + R +T + KLSRAA+E LAIIAY QP+TRAE+E+IRGV S G + L+E Sbjct: 92 APDLAFIMNR--ETVQQRKLSRAAMEVLAIIAYHQPVTRAELEDIRGVETSKGTLDVLME 149 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I+ GRR PGRP YGTTD FLD+FGL + DLP L Sbjct: 150 TGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGL 189 >DUF387_Q8KGW4_35-195_PF04079.5 Length = 161 Score = 160 bits (405), Expect = 1e-38 Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP++ LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFAANEPVTRSVLARVVG---RNCNIELVIDDIRAELAGRPYELVAVAGGWQHR 57 Query: 61 TKPEYAEYVERLLKT---ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIK 116 TK + + + T E +LS+A L IAY QPITR E+ G S I Sbjct: 58 TKKIFGDAIRAAFGTAAGEGAKELSQAEALVLMCIAYFQPITRGELSSFFGKEVSRDLIG 117 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L + LI R PG P Y TT FL FGL +L LP Sbjct: 118 VLRGQDLIASGPRSPQPGAPYTYVTTKTFLSQFGLDTLRQLPE 160 >DUF387_Q6LBD4_2-160_PF04079.5 Length = 159 Score = 160 bits (405), Expect = 1e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F + EP++ E LA ++ ELV VAGG++ + Sbjct: 1 GRVEAVIFASPEPVTREILARVVGGD---CNIDLIIDDIRDELRGRPYELVAVAGGWQHR 57 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +A + ++ LS+ L IAY QPITR E+ + G S I L Sbjct: 58 TRKVFATAIRTATGLGDQVRPLSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 118 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 159 >gi|70726423|ref|YP_253337.1| hypothetical protein SH1422 [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 160 bits (405), Expect = 2e-38 Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIE+LL+ AG E L +QL E+LEI GL + + Y L Sbjct: 5 GIIESLLYTAGDEGLDEKQLLEILEIN------QAKLSELISSYTSSGLIIQKFGSTYIL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 +K E + Y+E+L++ + KLS+AA+ETL+IIAY QP++R++IE IRG+NSDGA++TL+ Sbjct: 59 TSKKEASPYIEQLIEQKSNMKLSQAAMETLSIIAYNQPLSRSDIELIRGINSDGAVRTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGLIE + R TTD FL+ FG++ ++DLP Sbjct: 119 ARGLIEA--KDVENSRSHALQTTDLFLNVFGIEKIEDLP 155 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 160 bits (405), Expect = 2e-38 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 1 AILEALLYTSGDEGLEQKQIIDILDINLNQLEDLVSKYHSH------GLTIQRYGSTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 55 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E R TTD FL+ FG+++LD LP Sbjct: 115 ARGLVEAKDVDHS--RSHHLITTDLFLNVFGIENLDALP 151 >DUF387_Q9F5B4_43-202_PF04079.5 Length = 160 Score = 160 bits (405), Expect = 2e-38 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 2 RIEAVIFASAEPVSRETLARVVGKD---CSIDLLIDDLVEELRDRPYELVSVAGGWQHRT 58 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +AE + R LS L + Y QPITR E+ +I G S + L Sbjct: 59 RPRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL FG+++L DLP + Sbjct: 119 RGAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLPNI 160 >gi|27468096|ref|NP_764733.1| hypothetical protein SE1178 [Staphylococcus epidermidis ATCC 12228] Length = 180 Score = 160 bits (405), Expect = 2e-38 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 AI+EALL+ +G E L +Q+ ++L+I GL + Y L Sbjct: 5 AILEALLYTSGDEGLEQKQIIDILDINLNQLEDLVSKYHSH------GLTIQRYGSTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L+K + KLS+AA+ETL+IIAY QP+TR +IE IRG+NSDGA+KTL+ Sbjct: 59 TTKKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 RGL+E R TTD FL+ FG+++LD LP Sbjct: 119 ARGLVEAKDVDHS--RSHHLITTDLFLNVFGIENLDALP 155 >gi|66880202|ref|ZP_00405186.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Mycoplasma genitalium G-37] Length = 207 Score = 159 bits (404), Expect = 2e-38 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV G + ++L +L + + G+EL + + Sbjct: 23 ASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALLALERKLADDEQSGVELKKFGNSF 82 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EIRGV+S + Sbjct: 83 SLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGVDSFQIVDD 142 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 143 LIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 185 >gi|10567448|dbj|BAB16257.1| riorf138 [Agrobacterium rhizogenes] Length = 233 Score = 159 bits (404), Expect = 2e-38 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 44 RIEAVIFASAEPVSRETLARVVGKD---CSIDLLIDDLVEELRDRPYELVSVAGGWQHRT 100 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +AE + R LS L + Y QPITR E+ +I G S + L Sbjct: 101 RPRFAETIRASSAPTRGGAAALSEFEAMVLMAVGYLQPITRGELSKIFGKEVSRDVVGNL 160 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL FG+++L DLP + Sbjct: 161 RGAGFIGSGPRSPTPGAPYTYITTSHFLSVFGMETLRDLPNI 202 >DUF387_Q8NQK9_9-167_PF04079.5 Length = 159 Score = 159 bits (404), Expect = 2e-38 Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 1/160 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +E++L V P+S LA +L I G++L E A G+R Sbjct: 1 SRMESILLVVDTPVSARTLAGVLGIDVPATEAILKEMAFELSERGSGIDLRETAEGWRYY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T+PE A+ VE+ L +LSRAALETLA++AYRQP+TR++I +RGVN DG ++TL Sbjct: 61 TRPENADIVEQFLLDGNQTRLSRAALETLAVVAYRQPVTRSQISAVRGVNVDGVMRTLQL 120 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGL++EV + G YGTT+ L+ G+ SLD LP L Sbjct: 121 RGLVKEVDVDESTG-AHRYGTTELLLELLGIDSLDKLPDL 159 >DUF387_O52287_40-199_PF04079.5 Length = 160 Score = 159 bits (404), Expect = 2e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 2 RVEAVIFASAEPVSRETLARVVGKE---CSIDLLIDDLREDLQGRPYELVSVAGGWQHRT 58 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +A+ ++ R LS L + Y QPITR E+ +I G S + L Sbjct: 59 RPRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL F +++L DLP + Sbjct: 119 RGAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNI 160 >gi|68189363|gb|EAN04031.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 231 Score = 159 bits (403), Expect = 2e-38 Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A EP+ E LA+++ +LV VAGG++ T Sbjct: 37 RVEATIFAASEPVGRETLAKIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 93 Query: 62 KPEYAEYVERLLKT-ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + E+ L+++ + L I Y QPITR E+ G S I L Sbjct: 94 RPAYADAIRTAVGGGEKATNLTQSEVLVLMCIGYFQPITRGELSSFFGKEVSRDLIGHLR 153 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 LI R PG P Y TT EFL FGL +L DLP Sbjct: 154 GAKLIASGPRSPTPGAPYTYVTTKEFLLEFGLDTLRDLPD 193 >gi|10955114|ref|NP_059770.1| ylg [Agrobacterium tumefaciens] Length = 226 Score = 159 bits (403), Expect = 2e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA++F + EP+S E LA ++ ELV VAGG++ +T Sbjct: 41 RVEAVIFASAEPVSRETLARVVGKE---CSIDLLIDDLREDLQGRPYELVSVAGGWQHRT 97 Query: 62 KPEYAEYVERLLKTER--PPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 +P +A+ ++ R LS L + Y QPITR E+ +I G S + L Sbjct: 98 RPRFADTIQASAAPTRGTATMLSEFEAMVLMAVGYFQPITRGELSKIFGKEVSRDVMGNL 157 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT FL F +++L DLP + Sbjct: 158 RGAGFIRSGPRSPTPGAPYTYVTTTHFLSTFDMETLRDLPNI 199 >gi|68190294|gb|EAN04954.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 229 Score = 158 bits (402), Expect = 3e-38 Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F A EP+ E LA ++ +LV VAGG++ T Sbjct: 37 RVEATIFAASEPVGRETLARIVGKS---CSIDLLIDDIREELRGRPYDLVAVAGGWKHLT 93 Query: 62 KPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + +ER L+ + + L IAY QPITR E+ G S I L Sbjct: 94 RPAYADVIRTAVGRSERAVDLTLSEVLVLMCIAYFQPITRGELSSFFGKEISRDLIGNLR 153 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I R PG P Y TT EFL FGL +L DLP Sbjct: 154 SHGFIASGPRAPQPGAPYTYVTTKEFLLEFGLDTLHDLPD 193 >gi|47115369|emb|CAG28425.1| hypothetical conserved protein [Oligotropha carboxidovorans] Length = 194 Score = 158 bits (402), Expect = 3e-38 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F + EP++ E LA ++ ELV VAGG++ + Sbjct: 2 GRVEAVIFASPEPVTREILARVVGGD---CNIDLIIDDIRDELRGRPYELVAVAGGWQHR 58 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +A + ++ LS+ L IAY QPITR E+ + G S I L Sbjct: 59 TRKVFATAIRTATGLGDQVRPLSQQESLILLCIAYYQPITRGELSQFFGKEVSRDLIAHL 118 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 119 RGLGFIASGPRAPRPGAPYTYVTTNGFLSHFGFNTLRDLPDM 160 >gi|66866775|gb|EAL94175.1| Conserved hypothetical protein 281 [Arthrobacter sp. FB24] Length = 229 Score = 158 bits (401), Expect = 4e-38 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 24/183 (13%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-------------- 46 A IEA+L V +P + +LA L + Sbjct: 29 AAIEAVLMVIDQPATAVELAAGLNLTVDTVEQLLAELQREYNGYTVNAPDSDVANTAHMN 88 Query: 47 ---------GLELVEVAGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP 97 G EL +AGG+R+ ++ ++A+ V + + +L++AALETLA+IAYRQP Sbjct: 89 TAGTTSRPRGFELRNIAGGWRIYSRTDFADVVGGFVLEGQTARLTQAALETLAVIAYRQP 148 Query: 98 ITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 ++RA + IRGVN D ++TL++RGLIE+ G G LY TT FL+ G+ S+ +L Sbjct: 149 VSRARVSAIRGVNVDSVVRTLMQRGLIEDSGTDPESG-AILYRTTSYFLERMGIGSVAEL 207 Query: 158 PPL 160 P L Sbjct: 208 PQL 210 >gi|50954352|ref|YP_061640.1| hypothetical protein Lxx05700 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 204 Score = 158 bits (401), Expect = 5e-38 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLE---------IPPXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + + G EL EV Sbjct: 24 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 83 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 84 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 143 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 144 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 189 >gi|38233784|ref|NP_939551.1| hypothetical protein DIP1194 [Corynebacterium diphtheriae NCTC 13129] Length = 184 Score = 158 bits (400), Expect = 5e-38 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V +P S+ LA E P G+E+ E G+RL Sbjct: 7 SQIESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLY 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL Sbjct: 67 TVKRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQL 126 Query: 121 RGLIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 127 RGLIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 170 >DUF387_Q6AGG0_22-189_PF04079.5 Length = 168 Score = 157 bits (399), Expect = 6e-38 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLE---------IPPXXXXXXXXXXXXXXXXXXXGLELVEV 53 +EA+L VA EP+SL LA + + G EL EV Sbjct: 3 LEAILMVADEPMSLVTLATAVGAPVKRVRQAVDALAADFDGSPDAEGRPRVRRGFELREV 62 Query: 54 AGGYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG 113 GG+R+ + E+ V + + PP+LS+AALETLA+IAY+QPI+R I IR VN D Sbjct: 63 GGGWRVYVRAEFDAVVSGYVLQQNPPRLSQAALETLAVIAYKQPISRGAIASIRAVNVDS 122 Query: 114 AIKTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++TLL RGLI E+ G YGTTD L G+ S+++LP + Sbjct: 123 VVRTLLGRGLITELFADSDTG-AINYGTTDLLLTQLGVNSIEELPKI 168 >DUF387_Q6NHE4_7-170_PF04079.5 Length = 164 Score = 157 bits (399), Expect = 6e-38 Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IE++L V +P S+ LA E P G+E+ E G+RL Sbjct: 1 SQIESILLVVDQPASVAALARATEAAPETVTSVLRSMAQEFEDRGSGIEVRESPEGWRLY 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 T A+ VE+ L KLSRAALETLA++AYRQP TRA++ +RGVN DG ++TL Sbjct: 61 TVKRNADVVEKFLLDGSHTKLSRAALETLAVVAYRQPATRAQVAAVRGVNVDGVMRTLQL 120 Query: 121 RGLIEEV----GRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 RGLI EV G V G Y TT+ FLD G+ SL+ LP L Sbjct: 121 RGLIREVAINPGTEGVNGSAHRYETTELFLDLLGIDSLERLPDL 164 >gi|68189329|gb|EAN04000.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 245 Score = 157 bits (399), Expect = 7e-38 Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA++F A EP+S + LA ++ +LV VAGG+R T Sbjct: 43 RVEAVIFAASEPVSRQVLARIVGES---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLT 99 Query: 62 KPEYAEYVERLLKT-----ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAI 115 +P YA+ + T L+++ + L IAY QPITRAE+ G S I Sbjct: 100 RPAYADAIRSAFGTTVGGSGGAGDLTQSEVLVLMCIAYFQPITRAELSSFFGKEISRDLI 159 Query: 116 KTLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L G+I R PG P Y TT FL FGL +L DLP Sbjct: 160 AHLRGAGMIASGPRSPTPGAPYTYVTTKAFLLEFGLDTLRDLPD 203 >DUF387_SCPB_23-185_PF04079.5 Length = 163 Score = 157 bits (399), Expect = 8e-38 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIP--PXXXXXXXXXXXXXXXXXXXGLELVEVAGGY 57 A I LLFV G + ++L +L + + G+EL + + Sbjct: 1 ASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALLALERKLADDEQSGVELKKFGNSF 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L TKP +Y+ LL + L+ A+E LAIIAY QP TR I EIRGV+S + Sbjct: 61 SLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAYNQPCTRPRINEIRGVDSFQIVDD 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ + LI E+GR D PGRP +Y + +F D FG+ SLD LP + Sbjct: 121 LIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSLDQLPKI 163 >DUF387_Q7UE48_165-325_PF04079.5 Length = 161 Score = 157 bits (398), Expect = 1e-37 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 1/161 (0%) Query: 1 AIIEALLFVAGEPLSLEQLAELLE-IPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 A IEA+L +A PL+ +LA L + G+ + +VAGG R+ Sbjct: 1 ARIEAVLLIAKSPLNYRRLAALADVEDATSARTLVGELNELYERLGRGIRIEQVAGGQRM 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ A ++ RL +LS +ETLA++AYRQ +TRA++E +RGV ++ L+ Sbjct: 61 MTRSVVAPWLRRLGFLAPAIRLSWPMMETLAVVAYRQDVTRADVEAVRGVACGEILRQLM 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + L+ GR + GRP LYGTT FL GL S+ LPP+ Sbjct: 121 QLDLVRISGRSEELGRPYLYGTTKRFLKICGLASIKSLPPI 161 >gi|13488158|ref|NP_085871.1| hypothetical protein mll9345 [Mesorhizobium loti MAFF303099] Length = 233 Score = 157 bits (398), Expect = 1e-37 Identities = 57/160 (35%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F AGEP+S E L ++ +LV VAGG+R T Sbjct: 41 RVEATIFAAGEPISREVLTRIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLT 97 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 98 RPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLR 157 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT FL FGL++L DLP Sbjct: 158 SFGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 197 >gi|15639449|ref|NP_218899.1| hypothetical protein TP0458 [Treponema pallidum subsp. pallidum str. Nichols] Length = 192 Score = 156 bits (397), Expect = 1e-37 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG---LELVEVAGGY 57 A++EA+LFV G LS LA L + G LEL G Sbjct: 18 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 77 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 78 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 137 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 138 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 180 >gi|71083666|ref|YP_266386.1| segregation and condensation protein b [Candidatus Pelagibacter ubique HTCC1062] Length = 233 Score = 156 bits (397), Expect = 1e-37 Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 6/157 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA++F A EPL ++ + + G+ LV ++ + +T Sbjct: 26 VEAIIFAAAEPLDIDTIESKISKKIDVLKSLQKLQKEYSLR---GINLVCISNKWSFRTS 82 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKTLLER 121 + + + + KLSRAA+ETLAII Y QP+TRAEIEEIRGV ++ L+E Sbjct: 83 ENLSNLMSQ--EKTVEKKLSRAAVETLAIIVYHQPVTRAEIEEIRGVAFGTNTLEILMEL 140 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 ++ GR+DVPG+P YGTTD+FL +F L+ L DLP Sbjct: 141 NWVKPQGRKDVPGKPIQYGTTDDFLSHFSLQKLSDLP 177 >DUF387_Q981J7_40-198_PF04079.5 Length = 159 Score = 156 bits (396), Expect = 2e-37 Identities = 57/160 (35%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA +F AGEP+S E L ++ +LV VAGG+R T Sbjct: 2 RVEATIFAAGEPISREVLTRIVGKT---CSIDLLIDDIREELRGRPYDLVAVAGGFRHLT 58 Query: 62 KPEYAEYVE-RLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 +P YA+ + + +ER L+++ + L IA+ QPITRAE+ G S I L Sbjct: 59 RPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLR 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 GLI R PG P Y TT FL FGL++L DLP Sbjct: 119 SFGLIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPD 158 >DUF387_O83471_18-180_PF04079.5 Length = 163 Score = 155 bits (394), Expect = 3e-37 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXG---LELVEVAGGY 57 A++EA+LFV G LS LA L + G LEL G Sbjct: 1 ALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGV 60 Query: 58 RLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT 117 L E + L +LSRAA+ETL+I+AY QP+TRAEIE IRGV +D I+ Sbjct: 61 ALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRL 120 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L ER LI EVG++D+PG+PA YGTT+EFL F L+S+ DLP L Sbjct: 121 LSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL 163 >gi|69931372|ref|ZP_00627926.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 232 Score = 154 bits (391), Expect = 6e-37 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA++F A EP+ E LA ++ ELV VAGG++ + Sbjct: 29 GRVEAVIFAAPEPVPREVLARVVG---RACNLDLIVDDIRDELRGRPYELVSVAGGWQHR 85 Query: 61 TKPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTL 118 T+ +AE + ++ LS+A L IAY QPITR E+ G S I L Sbjct: 86 TRKGFAEAIRAATGLGDQVRPLSQAESLILLCIAYYQPITRGELGRFFGQEVSRDLIGYL 145 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G I R PG P Y TT+ FL +FG +L DLP + Sbjct: 146 RRLGFIASGPRAPQPGAPYTYVTTNGFLSHFGFATLRDLPDM 187 >gi|17935601|ref|NP_532391.1| hypothetical protein Atu1707 [Agrobacterium tumefaciens str. C58] Length = 250 Score = 154 bits (390), Expect = 8e-37 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 41 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 97 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + + + P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 98 AGDLSFVIRT--EEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 155 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 156 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 195 >DUF387_SCPB_7-168_PF04079.5 Length = 162 Score = 154 bits (390), Expect = 8e-37 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 1 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 61 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 121 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 162 >gi|26553491|ref|NP_757425.1| hypothetical protein MYPE390 [Mycoplasma penetrans HF-2] Length = 197 Score = 154 bits (390), Expect = 8e-37 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 ++IEA LF+AG E + ++L + + GL + +V Y+ Sbjct: 7 SVIEAALFIAGNEGVHKDKLKSISRLSVQDFEAVMEEMIFEYEKDPQRGLVVRKVGENYK 66 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L TKP+ ++ V ++ L++ +ETLAIIAY P TR++I E+R + ++ L Sbjct: 67 LFTKPDISKIVASGFGIKQKNPLNQGMIETLAIIAYNHPCTRSQIHELRKTDPTPMLEKL 126 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 +E GL+EE GR + G+P LY T +F D FGL S+ DLP + Sbjct: 127 IEIGLVEEAGRSEAVGKPYLYQVTPKFYDIFGLDSIKDLPEI 168 >DUF387_Q92Q27_30-185_PF04079.5 Length = 156 Score = 153 bits (388), Expect = 1e-36 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 2 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 59 AADLSFVVNT--DEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP +GTT +FLD+FGL+ + DLP + Sbjct: 117 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGI 156 >DUF387_Q8UEP8_40-195_PF04079.5 Length = 156 Score = 152 bits (386), Expect = 2e-36 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + EP+S+ +AE L P G+ LV+V G + +T Sbjct: 2 ITEALVFASAEPVSVAFIAERL---PRGMDIVAILHRLKAAYGERGVNLVQVGGQWAFRT 58 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + + + + P KLSRAALE LAIIAY QP+TRAEIEEIRGV S G + L+E Sbjct: 59 AGDLSFVIRT--EEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLME 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP GTT EFLD+FGL+ L DLP L Sbjct: 117 AGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGL 156 >DUF387_Q7P2S1_5-163_PF04079.5 Length = 159 Score = 152 bits (385), Expect = 3e-36 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA++F+ G+ ++ LA+ +I G+ + + L Sbjct: 1 SQVEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINIEIDSEIVYLS 58 Query: 61 TKPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L Sbjct: 59 TNPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLE 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 ER + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 119 ERKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELPD 158 >gi|34763150|ref|ZP_00144118.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 181 Score = 152 bits (385), Expect = 3e-36 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + +EA++F+ G+ ++ LA+ +I G+ + + L Sbjct: 5 SQVEAIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINIEIDSEIVYLS 62 Query: 61 TKPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T P Y E + + E +P KLS A++ETL+IIAY+QP+T++EIE IRGV+ D I L Sbjct: 63 TNPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPVTKSEIESIRGVSVDRIISNLE 122 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 ER + GR++ R LY TD+FL Y G+K++ +LP Sbjct: 123 ERKFVRNCGRQETGRRANLYEVTDKFLSYLGIKNITELPD 162 >gi|57284636|gb|AAW36730.1| segregation and condensation protein B [Staphylococcus aureus subsp. aureus COL] Length = 180 Score = 152 bits (385), Expect = 3e-36 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L++ GL + Y L Sbjct: 5 GILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSH------GLMIQRFGMTYVL 58 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E A Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 59 TTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 119 AKGLVEA--KVVNEQRSQQLITTDLFLNVFGISNIEDLP 155 >gi|15074460|emb|CAC46106.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 239 Score = 152 bits (385), Expect = 3e-36 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I EAL+F + +P+S +A L P G+ LV+VA + +T Sbjct: 31 IAEALVFASAQPVSEAYIAGRL---PRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFRT 87 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLE 120 + + V + KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E Sbjct: 88 AADLSFVVNT--DEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLME 145 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G + GRR PGRP +GTT +FLD+FGL+ + DLP + Sbjct: 146 AGWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGI 185 >gi|13357906|ref|NP_078180.1| hypothetical protein UU346 [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 364 Score = 151 bits (383), Expect = 5e-36 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 188 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 247 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 248 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 307 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 308 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 349 >gi|16126247|ref|NP_420811.1| hypothetical protein CC2004 [Caulobacter crescentus CB15] Length = 221 Score = 151 bits (382), Expect = 7e-36 Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 13 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 69 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 70 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI GRR PGRP +GTTD F++++GL +L DLP + Sbjct: 128 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGI 166 >DUF387_SCPB_188-349_PF04079.5 Length = 162 Score = 150 bits (381), Expect = 1e-35 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 2/162 (1%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXX-GLELVEVAGGYR 58 +II++ LF+AGE +SL+ L + GL LV+ ++ Sbjct: 1 SIIDSTLFLAGEEGVSLQDLKRTTGLNESSQLKTILNQLQKDYDVDDSGLVLVQFGEKFK 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 L T+ + + + + + T LS+ LETLAIIAY QP TRA+I+ IR + AI L Sbjct: 61 LLTQSKNKDALSKFVTTSFRTPLSQRNLETLAIIAYNQPTTRAKIQAIRDRDPKPAIDAL 120 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L+ LI E GR+D PG P LY + +F D FG+++L +LP L Sbjct: 121 LKLNLIIEAGRQDTPGHPILYTVSQKFYDLFGIRNLTELPRL 162 >DUF387_Q9A6S9_11-166_PF04079.5 Length = 156 Score = 149 bits (377), Expect = 2e-35 Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEALLF A EPLS LA+ L P G+EL VAG +R QT Sbjct: 3 IEALLFAAAEPLSDVDLAKRL---PEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTA 59 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGV-NSDGAIKTLLER 121 + + + + E P +LS+AA ETLAI+AY QP+TRAEIE +RGV S G I LLE Sbjct: 60 ADLSFLMTE--EREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLEL 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GLI GRR PGRP +GTTD F++++GL +L DLP + Sbjct: 118 GLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGI 156 >gi|21227131|ref|NP_633053.1| hypothetical protein MM1029 [Methanosarcina mazei Go1] Length = 371 Score = 148 bits (376), Expect = 4e-35 Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P GLE++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLMKITGKPKKNVSSAVQELMGAYSSRMSGLEILDLGDRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 66 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKKND 151 >gi|53987459|gb|AAV27660.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 195 Score = 148 bits (375), Expect = 4e-35 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA+L++ GE +S QL L++ G+ +VE ++ Sbjct: 5 IIEAILYLQGEKGVSSLQLQNCLKLAKISQARKLLKDFAIEFNRQKRGILVVEFDDIFKF 64 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR-GVNSDGAIKTL 118 T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IR G+NSD + +L Sbjct: 65 VTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVGSL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 125 LAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLPK 165 >gi|68190118|gb|EAN04779.1| Conserved hypothetical protein 281 [Mesorhizobium sp. BNC1] Length = 244 Score = 148 bits (374), Expect = 5e-35 Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 6/158 (3%) Query: 4 EALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKP 63 EAL+F + P+S + L++ L P G+ LV V + +T Sbjct: 38 EALVFASAAPVSFKSLSDRL---PDGVDIRAIMEELKGDYERRGVNLVRVEDSWAFRTAG 94 Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERG 122 + A + R + KLSRAALE L++IAY QP+TRAEIEEIRGV S G + LLE G Sbjct: 95 DLAFLMSR--DAVQQKKLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETG 152 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + GRR PGRP YGTT EFLD+FGL+ L DLP + Sbjct: 153 WVRMRGRRRAPGRPVTYGTTLEFLDHFGLEELRDLPGI 190 >DUF387_SCPB_5-157_PF04079.5 Length = 153 Score = 148 bits (374), Expect = 5e-35 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAG-EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 I+E+LLF AG E L +QL E+L+I GL + Y L Sbjct: 1 GILESLLFTAGDEGLDEKQLLEILDISKDQLVELIENYSSH------GLIIQRFGTTYVL 54 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 TK E + Y+E+L++ + KLS+AA+E L+IIAY QP++R++IE IR +NSDGA+KTL+ Sbjct: 55 TTKKEASMYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLI 114 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLP 158 +GL+E + R TTD FL+ FG+ +++DLP Sbjct: 115 AKGLVEA--KVVNEQRSQQLITTDLFLNVFGISNIEDLP 151 >DUF387_Q5ZZQ3_4-166_PF04079.5 Length = 163 Score = 148 bits (374), Expect = 6e-35 Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 2 IIEALLFVAGE-PLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 IIEA+L++ GE +S QL L++ G+ +VE ++ Sbjct: 2 IIEAILYLQGEKGVSSLQLQNCLKLAKISQARKLLKDFAIEFNRQKRGILVVEFDDIFKF 61 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIR-GVNSDGAIKTL 118 T + ++ + ER +LS +++E AIIAY+QP+TR+ I +IR G+NSD + +L Sbjct: 62 VTAKDLKPFIIDFVSNERKYRLSNSSIEVAAIIAYKQPVTRSTIAQIRGGINSDYIVGSL 121 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 L +G+IEE+G PG P LYG T F DYF L+S DLP Sbjct: 122 LAKGIIEELGTASTPGNPTLYGVTSRFFDYFKLRSAKDLPK 162 >gi|20093120|ref|NP_619195.1| hypothetical protein MA4332 [Methanosarcina acetivorans C2A] Length = 374 Score = 147 bits (372), Expect = 1e-34 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 9 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 69 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 125 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 154 >gi|19714294|gb|AAL94953.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 181 Score = 146 bits (370), Expect = 2e-34 Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +E+++F+ G+ ++ LA+ +I G+ L + L T Sbjct: 6 QVESIIFLGGDENKIKDLAKFFKISIEDMLKILLELKDDRKDT--GINLEVDSEIVYLST 63 Query: 62 KPEYAEYVERLLKTE-RPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P Y E + + E +P KLS A++ETL+IIAY+QPIT++EIE IRGV+ D + L E Sbjct: 64 NPLYGEVINNYFEQETKPKKLSSASIETLSIIAYKQPITKSEIESIRGVSVDRIVSNLEE 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R + G+++ + LY TD+FL Y G+KS+ +LP Sbjct: 124 RKFVRNCGKQESGRKANLYEVTDKFLSYLGIKSITELPD 162 >gi|68132602|ref|ZP_00540920.1| Conserved hypothetical protein 281 [Methanosarcina barkeri str. fusaro] Length = 371 Score = 146 bits (370), Expect = 2e-34 Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 6 IIEAALFAAGRAVSLEKLTKITGKPKKTVLSAIQKLTEIYSSRGSGIEILDLEERYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY++ + P +LS L TL++IAY QP+ ++++ ++RG + IK L+ER Sbjct: 66 KPEYSDLMR----EVAPKELSTPKLRTLSMIAYHQPLLQSDLIDMRGSGAYDHIKDLVER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G +E V GR TT F DYFGLK D Sbjct: 122 GFVESVP----CGRSRQLSTTPLFADYFGLKRND 151 >gi|22726508|gb|AAN05303.1| RC230 [Ruegeria sp. PR1b] Length = 200 Score = 146 bits (370), Expect = 2e-34 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L + P+ E LA ++ E+ +VAGG+ +T Sbjct: 31 RIEAVLSASASPVPREDLARVVGQGASVDLLVEDLAADLEGR---AFEINQVAGGWIFRT 87 Query: 62 KPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 88 RATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLH 147 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 148 ARDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLPD 187 >gi|71894119|ref|YP_278227.1| hypothetical protein MS53_0095 [Mycoplasma synoviae 53] Length = 185 Score = 146 bits (369), Expect = 2e-34 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 2 IIEALLFVAG-EPLSLEQLAELLEIP-PXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRL 59 +IEALL++ G E L+LEQ+ E+ + GL++V ++L Sbjct: 1 MIEALLYIQGDEGLNLEQVKEVFNLNNTHEAKKIMQDFQKDFNNLDRGLKVVVFDEIFKL 60 Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLL 119 T+ YV +L+ T +L+ AA+E IIAY+ PITR +I +IRG SD + LL Sbjct: 61 ATRESVRAYVSKLVTTTGKQRLTSAAIEVAGIIAYKGPITRGQISKIRGAVSDHIVNNLL 120 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 ++G+I EVG G P LY + +F D+F + S DLP + Sbjct: 121 KKGIIHEVGVSHTQGNPVLYEVSSQFYDHFKISSKQDLPKM 161 >DUF387_Q8KVW0_30-188_PF04079.5 Length = 159 Score = 146 bits (369), Expect = 2e-34 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+L + P+ E LA ++ E+ +VAGG+ +T Sbjct: 2 RIEAVLSASASPVPREDLARVVGQGASVDLLVEDLAADLEGR---AFEINQVAGGWIFRT 58 Query: 62 KPEYAEYVERLLK-TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + YA + ++ LS + LA IAY QPITR +++I G S I L Sbjct: 59 RATYAPAIRAAADVGDQLLDLSEFDVAVLAAIAYHQPITRDGLKDIFGKEISRDLIGRLH 118 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 R L+ R G P + TT++FL FGL+SL DLP Sbjct: 119 ARDLVGTGPRSPRRGAPYTFVTTEQFLVAFGLESLRDLPD 158 >DUF387_Q8TI25_8-157_PF04079.5 Length = 150 Score = 145 bits (368), Expect = 3e-34 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA LF AG +SLE+L ++ P G+E++++ Y +Q Sbjct: 2 IIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDLGERYVMQV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KPEY+E + P +LS L TL++IAY QP+ ++++ E+RG + IK L+ER Sbjct: 62 KPEYSELMR----EVAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRGSGAYDHIKDLIER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G ++ V GR TT F DYFGLK D Sbjct: 118 GFVDSVP----CGRSRQLSTTPLFADYFGLKRND 147 >gi|68562623|ref|ZP_00601873.1| Conserved hypothetical protein 281 [Rubrobacter xylanophilus DSM 9941] Length = 185 Score = 145 bits (367), Expect = 4e-34 Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++EA+LF + P+S LA + G+ L EVAGG++L T Sbjct: 6 LVEAVLFSSARPVSRGALASCTGLSAGEVERALAELAGRYSPERSGVVLREVAGGFQLAT 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 P + VER RP LS AA E LA + Y P+TR I +RGVNSD ++TL+ER Sbjct: 66 NPACSAAVERFRGEARPAPLSAAAHEVLACVLYLGPLTRGAISRVRGVNSDAVVRTLIER 125 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 GL+ E G + G+ AL T++FL G S +D PPL Sbjct: 126 GLLAEKGSSE-EGQAALLDVTEDFLVAAGASSREDFPPL 163 >DUF387_Q6MTL7_7-171_PF04079.5 Length = 165 Score = 144 bits (364), Expect = 7e-34 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AIIE LLF+ G+ +SL + +L+ P + Sbjct: 1 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 61 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 121 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 165 >gi|42560926|ref|NP_975377.1| hypothetical protein MSC_0386 [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 209 Score = 144 bits (364), Expect = 7e-34 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLE--IPPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AIIE LLF+ G+ +SL + +L+ P + Sbjct: 7 AIIEGLLFIYGDDGISLLDIQTVLDNLKPTEIKEIIIQLNKKYLSDPSTAFCIQTYKKNN 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L + KLS + +E L+IIAY+QPIT+ +I+EIR V+S + Sbjct: 67 YRLQTKPELHEYFAKLEQYNENKKLSHSTIEVLSIIAYKQPITKQQIDEIRNVDSTYQLY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L E+ LI+ VG+ R LYG TD F F +K +++LP + Sbjct: 127 KLREKKLIKVVGKDLENNRSNLYGITDNFFKVFNIKGGIEELPTI 171 >DUF387_O28692_5-154_PF04079.5 Length = 150 Score = 143 bits (361), Expect = 2e-33 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 2 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER + R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 62 KPQYAEYVERFT----VREFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL++ + GR + TT+EF YFGL S + Sbjct: 118 GLVK----AEKKGRSTILTTTEEFATYFGLDSAE 147 >gi|69300580|ref|ZP_00622145.1| Conserved hypothetical protein 281 [Silicibacter sp. TM1040] Length = 196 Score = 142 bits (360), Expect = 2e-33 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 5/160 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + P+S E LA ++ ++ V G+ L+T Sbjct: 28 RIEAVLFASATPVSREALARVVGQGVSVELLIDDLSAELESR---SFQVAHVKDGWFLRT 84 Query: 62 KPEYAEYVERLLKTERP-PKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLL 119 + YA + L+ + LA IAY QPITR +++I G + S I L Sbjct: 85 RSAYASAIRDAQSAGHQVMDLNAFDVAVLAAIAYHQPITREGLKDIFGKDISRDLIGRLH 144 Query: 120 ERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 +RGLI R G P + TTD+FL F L++L DLP Sbjct: 145 DRGLIGNGPRAPRRGAPYTFVTTDQFLLAFDLETLQDLPD 184 >gi|68210152|ref|ZP_00562018.1| Conserved hypothetical protein 281 [Methanococcoides burtonii DSM 6242] Length = 367 Score = 142 bits (360), Expect = 3e-33 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IIEA+LF AGE + + LA+L+ G+E++++ G Y +Q Sbjct: 6 IIEAVLFAAGEAVDTQTLAKLINKSAKNVTPVIRSLMEEYSTRESGMEIIDLGGRYVMQV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+Y + + P +L L TL+++AY QP+ ++E+ ++RG + I+ L +R Sbjct: 66 KPKYTDVIS----PIAPKELKAPILRTLSMVAYHQPVVQSELVDMRGNSVYDHIRELKDR 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 G IE V GR L TT F DYFGL + Sbjct: 122 GFIEAVPH----GRTKLLQTTPLFADYFGLDRNE 151 >gi|11499175|ref|NP_070409.1| hypothetical protein AF1580 [Archaeoglobus fulgidus DSM 4304] Length = 166 Score = 141 bits (358), Expect = 4e-33 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF + EP+ +L ++ +E+++V Y ++ Sbjct: 6 IVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKYLMRV 65 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 KP+YAEYVER + R L TLA+IA +QPIT A++ +IRG +K L ER Sbjct: 66 KPQYAEYVERFT----VREFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKKLQER 121 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 GL++ + GR + TT+EF YFGL S + Sbjct: 122 GLVK----AEKKGRSTILTTTEEFATYFGLDSAE 151 >gi|6459641|gb|AAF11414.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 182 Score = 137 bits (347), Expect = 8e-32 Identities = 72/149 (48%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P+ L +LA +L + G+ L VAGGYRL P A ++ Sbjct: 24 RPVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAP 83 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 84 LLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRG-ASAGTVLTLQERELVKVVGRSD 142 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 143 AVGQPLLYGTTEKFLLEFGLGSLQDLPPL 171 >gi|69931252|ref|ZP_00627847.1| Conserved hypothetical protein 281 [Nitrobacter hamburgensis X14] Length = 236 Score = 136 bits (344), Expect = 2e-31 Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 +EA +F + P+ E LA L+ ELV VAGG++ + Sbjct: 28 GRVEAAIFASPTPVPRETLARLIG---RACVLDELIADIRDELKPRPYELVFVAGGFQHR 84 Query: 61 TKPEYAEYVERLLK--TERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKT 117 +K + E + +L PP LS+ ++ IAY QP+TR+ I + G S I Sbjct: 85 SKARFTEAIRAVLGGRETGPPDLSKTESLVISAIAYLQPVTRSSISRLLGKAISRDIIAK 144 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 L LI R PG P Y TT FL FGL SL DLP + Sbjct: 145 LKRLDLIGAGPRMAEPGAPFSYVTTPTFLSVFGLASLRDLPEI 187 >gi|71674527|ref|ZP_00672274.1| Conserved hypothetical protein 281 [Trichodesmium erythraeum IMS101] Length = 173 Score = 135 bits (342), Expect = 3e-31 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 + IEA+L++ G+ LS+ ++AE+ + LE+VE GY LQ Sbjct: 6 SKIEAILYLKGKALSISEIAEIAKCERGQIKDALIELMSEYAHRHTALEVVETEKGYSLQ 65 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 KP + E +E L++ E L AL TLA IA + IT++E+ +IRG + L+ Sbjct: 66 LKPTFTELIESLIEPE----LGVGALRTLAAIALKGGITQSELVDIRGSGVYQHVPELVS 121 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 G I RR R TD+F YF LD LP Sbjct: 122 LGFIR--KRRQKESRSYWLQVTDKFHQYF---QLDQLPQ 155 >DUF387_Q9RTA4_13-171_PF04079.5 Length = 159 Score = 135 bits (340), Expect = 4e-31 Identities = 72/149 (48%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P+ L +LA +L + G+ L VAGGYRL P A ++ Sbjct: 12 RPVRLRELAGVLGLGEDATLRAVQAFAAALEAAGLGITLEAVAGGYRLIVPPGLAGHLAP 71 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LAIIAYRQP+TRAEIE +RG S G + TL ER L++ VGR D Sbjct: 72 LLAPAPLPSLSNAALEVLAIIAYRQPVTRAEIEAMRG-ASAGTVLTLQERELVKVVGRSD 130 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT++FL FGL SL DLPPL Sbjct: 131 AVGQPLLYGTTEKFLLEFGLGSLQDLPPL 159 >gi|67921493|ref|ZP_00515011.1| Conserved hypothetical protein 281 [Crocosphaera watsonii WH 8501] Length = 155 Score = 133 bits (336), Expect = 1e-30 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 9/157 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL +A+ E LE+VE GY LQ + Sbjct: 8 IEAILYLKGQPLSLMDIAQCAECEVDTAQEAMMELISDYAYRDSALEVVETETGYSLQLR 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + + L P +L + AL TLA IA + PI + E+ E+RG + ++ L+E G Sbjct: 68 SVFDD----LTDDIIPAELGKGALRTLAAIALKNPIVQTELIELRGSTAYQHVQELVEMG 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 + RR GR L T++F YF +D P Sbjct: 124 FVR--KRRQESGRSYLLEVTNKFHQYF---EIDQFPQ 155 >gi|5457719|emb|CAB49210.1| Transcriptional regulator, putative (ypuH-like) [Pyrococcus abyssi GE5] Length = 192 Score = 133 bits (336), Expect = 1e-30 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQKVIHLM---PKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 125 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 160 >gi|18978393|ref|NP_579750.1| hypothetical protein PF2021 [Pyrococcus furiosus DSM 3638] Length = 188 Score = 133 bits (335), Expect = 2e-30 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLSL++L++ L I +E+V+VAG + Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLDYLEKLIELIASEYAERKSAIEIVKVAGDKWV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+LS L+TLA+IAY QP+ +++I ++RG + I+ L Sbjct: 68 MQVKQEYSQRVIPLM---PKPELSTGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIRKL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 LE GLI + R L GTT++F + +G D Sbjct: 125 LEMGLI----YAEPYERTRLLGTTEKFAELYGFPEND 157 >gi|23129311|ref|ZP_00111143.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Nostoc punctiforme PCC 73102] Length = 180 Score = 132 bits (334), Expect = 3e-30 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 9/158 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLSL ++AE LE++E GY LQ + Sbjct: 9 IEAILYLKGKPLSLGEIAEYAACDRAAVKEGIIELMDNYAHRDSALEVIETPDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ +RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGVGALRTLAAIALNSPILQSDLINLRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 I RRD R T +F YF ++ LP + Sbjct: 125 FIR--KRRDSDSRSYSLQVTPKFHQYFQIE---QLPQI 157 >gi|16332178|ref|NP_442906.1| hypothetical protein slr1577 [Synechocystis sp. PCC 6803] Length = 162 Score = 132 bits (334), Expect = 3e-30 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 7 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 66 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 67 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 122 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + R+ GR TD+F YF + SL Sbjct: 123 FVR--KRKQTEGRSYWLEITDKFHQYFEIDSL 152 >DUF387_P74610_5-159_PF04079.5 Length = 155 Score = 132 bits (333), Expect = 3e-30 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ +P+++ L + LE+VE GY LQ + Sbjct: 3 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELMEDYAHRDSALEIVETNQGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 + ++ + P LS A+L TLA IA + P+ + ++ E+RG + ++ L+E G Sbjct: 63 AAFQHLIQDFV----PADLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + R+ GR TD+F YF + SL Sbjct: 119 FVR--KRKQTEGRSYWLEITDKFHQYFEIDSL 148 >gi|66798391|ref|ZP_00397145.1| Conserved hypothetical protein 281 [Deinococcus geothermalis DSM 11300] Length = 176 Score = 132 bits (333), Expect = 3e-30 Identities = 72/149 (48%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 12 EPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTKPEYAEYVER 71 P++ ++A LL +P G E+ VAGGYRL P A ++ Sbjct: 18 RPVTRREVAALLGLPEEAAARALDAFAGVLRDAGLGFEVEAVAGGYRLVVPPALAAHLAP 77 Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRD 131 LL P LS AALE LA+IAYRQPITRAEIE +RG S G + TL ER L++ VGR D Sbjct: 78 LLAPPPLPPLSAAALEVLAVIAYRQPITRAEIEAMRG-GSAGTVVTLQERELVKVVGRSD 136 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 G+P LYGTT+ FL FGL SL+DLPPL Sbjct: 137 AVGQPLLYGTTERFLLEFGLTSLEDLPPL 165 >gi|17134304|dbj|BAB76865.1| all5166 [Nostoc sp. PCC 7120] Length = 198 Score = 132 bits (333), Expect = 3e-30 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 9 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 68 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 69 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 124 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + RRD R T +F YF ++ L Sbjct: 125 FVR--KRRDNESRSYSLQVTPKFHQYFQIEQL 154 >DUF387_Q9V1Y8_8-160_PF04079.5 Length = 153 Score = 132 bits (333), Expect = 4e-30 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+V+VAG + Sbjct: 1 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQKVIHLM---PKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 118 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 153 >gi|33634872|emb|CAE20858.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 177 Score = 131 bits (331), Expect = 6e-30 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 20 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 79 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 80 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 135 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + IE +R GR +++F F + LP L Sbjct: 136 QNFIE--RKRQSEGRSYWLTLSEKFHRTFSV-----LPDL 168 >gi|46201878|ref|ZP_00054138.2| COG1386: Predicted transcriptional regulator containing the HTH domain [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 130 bits (328), Expect = 1e-29 Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 1/88 (1%) Query: 73 LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRD 131 ++ + KLSRAA+ETLAIIAY QP+TRAEIEE+RGV S G + L G I GRR Sbjct: 1 MERSQERKLSRAAVETLAIIAYHQPVTRAEIEEVRGVALSKGTMDILFSAGWIRPKGRRR 60 Query: 132 VPGRPALYGTTDEFLDYFGLKSLDDLPP 159 PGRP + TTD FLD+FGL+SL DLP Sbjct: 61 TPGRPLTWATTDGFLDHFGLESLSDLPG 88 >DUF387_Q8YLY0_7-157_PF04079.5 Length = 151 Score = 129 bits (325), Expect = 2e-29 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 IEA+L++ G+PLS+ ++AE LE+VE GY LQ + Sbjct: 3 IEAILYLKGKPLSVGEIAEYAACDRATVEEGIIELMDSYAHRDSALEVVETTDGYSLQLR 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V+ ++ P +L AL TLA IA PI ++++ E+RG + L+E G Sbjct: 63 SDFQDLVQTMI----PVELGLGALRTLAAIALNSPILQSDLIELRGSGVYQHVPELVELG 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 + RRD R T +F YF ++ L Sbjct: 119 FVR--KRRDNESRSYSLQVTPKFHQYFQIEQL 148 >DUF387_Q7V7Q5_20-168_PF04079.5 Length = 149 Score = 129 bits (325), Expect = 3e-29 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A +EA+L++ G P++L+++AEL LE+ E G Y LQ Sbjct: 1 ARLEAILYLKGRPVTLKEMAELANETEELIEQALLALTAGYAQRDTALEIQENNGRYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 P E V LL P LS A L TLA IA ++ I ++E+ +IRG + IK L+ Sbjct: 61 LCPGLGELVRNLL----PVDLSIATLRTLATIALKKRILQSELIDIRGSGAYDHIKELVA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 + IE +R GR +++F F + LP L Sbjct: 117 QNFIE--RKRQSEGRSYWLTLSEKFHRTFSV-----LPDL 149 >gi|56751100|ref|YP_171801.1| hypothetical protein syc1091_d [Synechococcus elongatus PCC 6301] Length = 183 Score = 128 bits (323), Expect = 4e-29 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 7 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 66 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 67 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +G I+ RR GR TD+F YF Sbjct: 123 QGFIQ--KRRQSNGRSYWLEVTDKFHQYF 149 >gi|37521427|ref|NP_924804.1| hypothetical protein glr1858 [Gloeobacter violaceus PCC 7421] Length = 158 Score = 128 bits (323), Expect = 5e-29 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ PL+LEQL+ E LE+ + A GY LQ Sbjct: 9 RLEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQL 68 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ + Sbjct: 69 RPPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGK 124 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 G + R GR T++F YF ++ + DL Sbjct: 125 GFVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 156 >DUF387_Q7NJH4_8-156_PF04079.5 Length = 149 Score = 127 bits (320), Expect = 1e-28 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ PL+LEQL+ E LE+ + A GY LQ Sbjct: 2 RLEAVLYLKARPLNLEQLSRYAECDRDDCREALLELLEDYAGRDSALEIADTATGYALQL 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 +P + ++RL+ P L A TLA+IA + P+ ++E+ E+RG + ++ L+ + Sbjct: 62 RPPLQDLIQRLV----PADLGVGAQRTLALIALKGPLPQSELVELRGSGAYDQVRDLVGK 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 G + R GR T++F YF ++ + DL Sbjct: 118 GFVS----RCAEGRSYKLRVTEKFFQYFAIEDVRDL 149 >DUF387_Q5N339_7-162_PF04079.5 Length = 156 Score = 126 bits (319), Expect = 1e-28 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+PLSL +AE + LEL+E G+ LQ Sbjct: 1 ARIEAILYLKGQPLSLTAIAEHAKCDRDAAADALLQLMDDYAHRDSALELLEDERGFCLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P E V LL P L+ L TLA IA + I + ++ ++RG + ++ L+E Sbjct: 61 LRPALQELVHELL----PVDLTTGTLRTLAAIALKGRIAQTDLVDLRGSGAYQQVQELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +G I+ RR GR TD+F YF Sbjct: 117 QGFIQ--KRRQSNGRSYWLEVTDKFHQYF 143 >gi|14591635|ref|NP_143717.1| hypothetical protein PH1891 [Pyrococcus horikoshii OT3] Length = 195 Score = 126 bits (317), Expect = 3e-28 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 11/162 (6%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEVAG-GYR 58 A++EA LFVAG PLS+++L++ L I +E+ +VAG + Sbjct: 11 ALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYAERKSAIEVTKVAGDKWV 70 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P+L+ L+TLA+IA+ QP+ +++I ++RG + IK L Sbjct: 71 MQVKQEYSQRVIHLM---PKPELTAGELKTLALIAFLQPVEQSKIVKLRGSQAYEHIKRL 127 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPPL 160 LE GLI + R L GTT++F + +G D P L Sbjct: 128 LEMGLI----YAEPYERTKLLGTTEKFAELYGFPEND--PNL 163 >gi|57160221|dbj|BAD86151.1| predicted transcription regulator, YpuH-like family [Thermococcus kodakarensis KOD1] Length = 194 Score = 125 bits (315), Expect = 4e-28 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 8 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 67 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 68 MQVKQEYSQRVIHLM---PKPDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 124 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 125 VEMGLV----YAEPYERTKLLGTTKKFAELYGFPEND 157 >gi|33632998|emb|CAE07809.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 165 Score = 124 bits (313), Expect = 8e-28 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 8 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 67 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 68 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 123 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 124 QDFIE--RRRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 161 >DUF387_Q7U6P4_8-162_PF04079.5 Length = 155 Score = 124 bits (312), Expect = 9e-28 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA++++ G P+ L +L++L P LE+VE G + LQ Sbjct: 1 AQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQRDTALEIVEQNGRFGLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 +P A+ V+ +L P LS A L TLA IA ++ I ++++ ++RG + IK LL Sbjct: 61 LRPALADLVQNML----PVNLSTATLRTLATIALKKRILQSDLVDLRGSGAYDHIKELLA 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFG-LKSLDDLPP 159 + IE RR GR +++F F L L PP Sbjct: 117 QDFIE--RRRQSEGRSYWITLSEKFHRTFSVLPDLAQEPP 154 >DUF387_Q5JDN0_8-160_PF04079.5 Length = 153 Score = 123 bits (309), Expect = 2e-27 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEI-PPXXXXXXXXXXXXXXXXXXXGLELVEV-AGGYR 58 A++EA LFVAG PLSL++L++ L I +E+V V Y Sbjct: 1 ALVEAALFVAGRPLSLKELSKALGIKSLEYLEKLIELIAAEYAERKSAIEVVRVLEDKYV 60 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTL 118 +Q K EY++ V L+ P L L+TLA+IAY QP+ +++I ++RG + IK L Sbjct: 61 MQVKQEYSQRVIHLM---PKPDLRTGELKTLALIAYLQPVEQSKIIKLRGSQAYEHIKRL 117 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLD 155 +E GL+ + R L GTT +F + +G D Sbjct: 118 VEMGLV----YAEPYERTKLLGTTKKFAELYGFPEND 150 >DUF387_Q6F0R6_7-169_PF04079.5 Length = 163 Score = 123 bits (309), Expect = 2e-27 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AI+E LLFV G+ +SL L +LE P + + Sbjct: 1 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 61 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 120 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L ++ LI+ VG+ LY TD F F + + LP + Sbjct: 121 RLRQKKLIKAVGKTSTG--ANLYTITDNFFKLFNITGGFEALPQI 163 >gi|50365366|ref|YP_053791.1| chromosomal segregation/condensation protein [Mesoplasma florum L1] Length = 209 Score = 123 bits (309), Expect = 2e-27 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 1 AIIEALLFVAGE-PLSLEQLAELLEI--PPXXXXXXXXXXXXXXXXXXXGLELVEVA-GG 56 AI+E LLFV G+ +SL L +LE P + + Sbjct: 7 AIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNK 66 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YRLQTKPE EY +L +LS +++E L+II Y+ PI++ +IE IR I Sbjct: 67 YRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIY 126 Query: 117 TLLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK-SLDDLPPL 160 L ++ LI+ VG+ LY TD F F + + LP + Sbjct: 127 RLRQKKLIKAVGKTSTG--ANLYTITDNFFKLFNITGGFEALPQI 169 >gi|71483060|gb|AAZ32493.1| predicted transcriptional regulator containing the HTH domain [uncultured euryarchaeote Alv-FOS4] Length = 169 Score = 121 bits (305), Expect = 6e-27 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 8/151 (5%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 I+EA+LF P+ + ++A++ + +E+V + Y +Q Sbjct: 7 IVEAVLFSTDRPMRVGEIAKIGGLRSEEVSKAMRKLREEYEQRDGAIEIVRIGNKYVMQL 66 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 + EY Y + K E L+TLAIIAY QPIT+ ++ E+ G + L +R Sbjct: 67 RDEYVNYGYSVGKKEMNDD----VLKTLAIIAYYQPITQRKLREMLGTKVYQHVDELKKR 122 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GLI G++ GR + TT F +YFG+ Sbjct: 123 GLI--YGKKS--GRTEILRTTKRFNEYFGID 149 >gi|33240376|ref|NP_875318.1| Predicted HTH domain transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 160 Score = 120 bits (303), Expect = 9e-27 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 3 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 62 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 63 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +E +R GR +++F F Sbjct: 119 MNFVE--RKRQREGRSFWLTLSEKFHRTF 145 >gi|72382138|ref|YP_291493.1| prokaryotic chromosome segregation and condensation protein ScpB [Prochlorococcus marinus str. NATL2A] Length = 168 Score = 119 bits (301), Expect = 2e-26 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G P S +++AELL+ LE+ E Y L+ Sbjct: 11 AKIEAILYLKGRPTSSKEMAELLDKDIAEIEKALWELKAGYAQRDTSLEINENKSHYSLE 70 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P LS A L TLA +A ++ I ++E+ ++RG + IK L+E Sbjct: 71 LRQGLGELVQDLL----PADLSIATLRTLATVALKKKILQSELVDLRGSGAYDHIKELVE 126 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYFGL 151 + +E RR GR +++F F + Sbjct: 127 KNFVE--RRRQKDGRSFWLTLSEKFHQTFSV 155 >gi|58040187|ref|YP_192151.1| hypothetical protein GOX1756 [Gluconobacter oxydans 621H] Length = 129 Score = 119 bits (300), Expect = 2e-26 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ + LLE LI GR++VPG Sbjct: 18 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 77 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 78 RPVLWGTTASFLESFGLPDLRGLP 101 >gi|32445098|emb|CAD75100.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 297 Score = 119 bits (299), Expect = 3e-26 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 127 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 186 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 187 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 246 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 247 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 290 >DUF387_Q5FQ51_2-103_PF04079.5 Length = 102 Score = 118 bits (298), Expect = 3e-26 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Query: 76 ERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDG-AIKTLLERGLIEEVGRRDVPG 134 E+P +LSR A+ETLAIIAY QP TRAEIE IRGV+ + LLE LI GR++VPG Sbjct: 17 EKPRRLSRGAMETLAIIAYHQPCTRAEIEAIRGVSLGQAVLDALLEDSLIAPKGRKEVPG 76 Query: 135 RPALYGTTDEFLDYFGLKSLDDLP 158 RP L+GTT FL+ FGL L LP Sbjct: 77 RPVLWGTTASFLESFGLPDLRGLP 100 >DUF387_Q7VC16_3-151_PF04079.5 Length = 149 Score = 118 bits (297), Expect = 5e-26 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEA+L++ G+P+S+ +++E+L+ LE+ E Y LQ Sbjct: 1 ARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTALEIKENEAKYSLQ 60 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 + E V+ LL P +S A L TLA IA ++ I ++E+ ++RG + IK L+E Sbjct: 61 LRKGLGELVQNLL----PVDISGATLRTLATIALKKRILQSELVDLRGSGAYEHIKELVE 116 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLDYF 149 +E +R GR +++F F Sbjct: 117 MNFVE--RKRQREGRSFWLTLSEKFHRTF 143 >DUF387_Q7UPG2_127-292_PF04079.5 Length = 166 Score = 115 bits (289), Expect = 4e-25 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 1 AIIEALLFVAGE---PLSLEQLAELL-EIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGG 56 AI+EA LFV PL+ +LA ++ P G+ +VE GG Sbjct: 1 AIVEAALFVGHPENLPLTPPRLASIMRGFSPEEVVDIIDKLNASYRAERQGMRIVEQDGG 60 Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIK 116 YR+ P+ R +L+++A+E L+++AY+ IT A + ++RG +S + Sbjct: 61 YRMVVAPDVESVRAAFTGKIRETRLNQSAVEVLSLVAYQPGITSARVTDLRGRDSGSLLN 120 Query: 117 TLLERGLIEEVGRRDVPGRPAL---YGTTDEFLDYFGLKSLDDLP 158 ++ R L+ EV R G L + + L GL+++DDLP Sbjct: 121 QMVRRRLV-EVKREPGEGSDKLVSRFYPAERLLVLLGLETIDDLP 164 >gi|4981005|gb|AAD35579.1| conserved hypothetical protein [Thermotoga maritima MSB8] Length = 167 Score = 115 bits (289), Expect = 4e-25 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F + ++LE+L ++LE P G+ L EV G YR Sbjct: 5 AAIEALIFASN-GITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 63 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V +L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 64 TKPEYAGFVSKLSG-RKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 122 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 123 MGIV----RKKRKGKSYLYQLSPSFVE 145 >DUF387_Q7V1G4_3-155_PF04079.5 Length = 153 Score = 114 bits (287), Expect = 7e-25 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ G P+S + L+E+ +EL E+ Y L+ Sbjct: 2 RVEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLEL 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 62 KSILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNK 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 118 KFI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 147 >gi|33861466|ref|NP_893027.1| hypothetical protein PMM0909 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 160 Score = 114 bits (287), Expect = 7e-25 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 6/152 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ G P+S + L+E+ +EL E+ Y L+ Sbjct: 4 RVEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAIELNEINSCYCLEL 63 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K E+VE LL P +L + L TLA IA ++ I ++++ +RG + IK L + Sbjct: 64 KSILNEFVEDLL----PSELRTSELRTLATIAIKKKILQSDLIVLRGSGAYDHIKELTNK 119 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 I + R+ GR +++F F + + Sbjct: 120 KFI--IKRKQKDGRSYWLSLSEKFFQTFAVSN 149 >DUF387_Q9WYW4_5-159_PF04079.5 Length = 155 Score = 114 bits (287), Expect = 7e-25 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A IEAL+F + ++LE+L ++LE P G+ L EV G YR Sbjct: 1 AAIEALIFASN-GITLERLIKILEKDPEEIKRALEELKKEYEDEAHGVVLREVNGRYRFF 59 Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLE 120 TKPEYA +V +L + L+ +E +A++ PI ++EI+ RG +S + +L Sbjct: 60 TKPEYAGFVSKLSG-RKYKNLTDTQMEVVALLLISGPIPKSEIDAFRGKDSSAVLSSLQR 118 Query: 121 RGLIEEVGRRDVPGRPALYGTTDEFLD 147 G++ R+ G+ LY + F++ Sbjct: 119 MGIV----RKKRKGKSYLYQLSPSFVE 141 >gi|22294568|dbj|BAC08398.1| tlr0846 [Thermosynechococcus elongatus BP-1] Length = 173 Score = 113 bits (285), Expect = 1e-24 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ +PL+L +LA L LE+V++ Y LQ Sbjct: 13 RVEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQL 72 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL Sbjct: 73 KSAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTL 128 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 G I RRD R + T+ F YF + L Sbjct: 129 GFI--RRRRDSQSRSYILQVTERFHQYFQVDHL 159 >DUF387_Q8DKL3_12-162_PF04079.5 Length = 151 Score = 111 bits (280), Expect = 5e-24 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 +EA+L++ +PL+L +LA L LE+V++ Y LQ Sbjct: 2 RVEAILYLKAQPLTLTELATLAGTDREAIELALIELLNDYAHRQTALEIVQIDDKYSLQL 61 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLER 121 K + E V+ L+ P +L AA TLA+IA R PI + E+ +RG N+ I+ LL Sbjct: 62 KSAFQELVQSLV----PVELGVAAQRTLALIALRGPIRQPEVIALRGANAYQHIQELLTL 117 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSL 154 G I RRD R + T+ F YF + L Sbjct: 118 GFI--RRRRDSQSRSYILQVTERFHQYFQVDHL 148 >gi|27462870|gb|AAO15624.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 136 Score = 111 bits (278), Expect = 9e-24 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 1/82 (1%) Query: 80 KLSRAALETLAIIAYRQPITRAEIEEIRGVN-SDGAIKTLLERGLIEEVGRRDVPGRPAL 138 KLSRAALE LAIIAY QP+TRAEIE+IRGV S G + L+E G + GRR PGRP Sbjct: 1 KLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSRGTLHVLMEAGWVRFRGRRRTPGRPVT 60 Query: 139 YGTTDEFLDYFGLKSLDDLPPL 160 GTT +FLD+FGL+ L DLP L Sbjct: 61 LGTTRDFLDHFGLEELRDLPGL 82 >gi|7225967|gb|AAF41152.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 505 Score = 106 bits (265), Expect = 2e-22 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 356 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 415 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV + Sbjct: 416 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 469 >DUF387_Q9K079_356-484_PF04079.5 Length = 129 Score = 104 bits (261), Expect = 6e-22 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 A+IEA L EPL+ + + EL P L+LV G+R Q Sbjct: 1 ALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQ 60 Query: 61 TKPEYAEYVERL--LKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAI 115 ERL L+ +R P+ SRA +ETLAIIAY+QP+TR +IE IRGV + Sbjct: 61 I---VQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 114 >DUF387_Q6L0G6_6-153_PF04079.5 Length = 148 Score = 98.4 bits (245), Expect = 6e-20 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ EPL + +A+ L++ LE+ ++ Y++Q Sbjct: 3 VEAILYSCEEPLKVSDIADYLKVSNDDVIRAMKLIARSYNEINSTLEIKKIGNKYKIQLS 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V +K L + + L+ I + + E+ E G N ++K L Sbjct: 63 NDFNDVVYPFVK----KDLDKRDIAMLSYIYGKPGVIAGELRENFGYNFMESVKKLKAEK 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 LI R+ Y T F F +K Sbjct: 119 LITSHKYRNT----FKYHVTKNFYVRFNVKD 145 >gi|48430671|gb|AAT43536.1| thiosulfate sulfurtransferase [Picrophilus torridus DSM 9790] Length = 153 Score = 98.4 bits (245), Expect = 6e-20 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ EPL + +A+ L++ LE+ ++ Y++Q Sbjct: 8 VEAILYSCEEPLKVSDIADYLKVSNDDVIRAMKLIARSYNEINSTLEIKKIGNKYKIQLS 67 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 ++ + V +K L + + L+ I + + E+ E G N ++K L Sbjct: 68 NDFNDVVYPFVK----KDLDKRDIAMLSYIYGKPGVIAGELRENFGYNFMESVKKLKAEK 123 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKS 153 LI R+ Y T F F +K Sbjct: 124 LITSHKYRNT----FKYHVTKNFYVRFNVKD 150 >gi|14324839|dbj|BAB59765.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 171 Score = 98.0 bits (244), Expect = 7e-20 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 8/155 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 15 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 74 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ E LS+ LA +A + + + + G +D I L Sbjct: 75 KEYYDFAYRVMEPE----LSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 130 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 LI + G G + F FG+ + L Sbjct: 131 LIRTS--KKGNGTAIYLG--ENFEKVFGITKKELL 161 >DUF387_Q97B36_13-163_PF04079.5 Length = 151 Score = 95.7 bits (238), Expect = 3e-19 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 8/155 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ PLS+ ++ +L I LE+ ++ YR+Q K Sbjct: 3 VEAILYATRNPLSVRSISLILGIEAGAISRIIKKLRLEYKKRNTSLEIAKIGNKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERG 122 EY ++ R+++ E LS+ LA +A + + + + G +D I L Sbjct: 63 KEYYDFAYRVMEPE----LSKYETGFLATVALNEGASLSFFRKRYGSRTDDMISKLKTMS 118 Query: 123 LIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDL 157 LI + G G + F FG+ + L Sbjct: 119 LIRTS--KKGNGTAIYLG--ENFEKVFGITKKELL 149 >DUF387_Q9HKK2_10-161_PF04079.5 Length = 152 Score = 90.7 bits (225), Expect = 1e-17 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 3 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 62 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y E PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 63 SQYFS--EAYA--VSPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 118 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GL++ + + G +Y +F YFG+ Sbjct: 119 GLVKLINK----GNSKIYTLGRKFESYFGIS 145 >gi|10639763|emb|CAC11735.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 179 Score = 90.7 bits (225), Expect = 1e-17 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 3 IEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQTK 62 +EA+L+ + P+S++ ++++L P LE+ YR+Q K Sbjct: 12 VEAILYSSRSPVSIKLISQILSADPLSVRKAVINLKKNYEKRDGALEVASYGYKYRIQLK 71 Query: 63 PEYAEYVERLLKTERPPKLSRAALETLAIIAYRQ-PITRAEIEEIRGVNSDGAIKTLLER 121 +Y E PP +SR+ ++ +A IA ++ I++I +D + L + Sbjct: 72 SQYFS--EAYA--VSPPDISRSEMKVIANIAISDVGLSATAIKKIAHQRTDQILSHLEDM 127 Query: 122 GLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 GL++ + + G +Y +F YFG+ Sbjct: 128 GLVKLINK----GNSKIYTLGRKFESYFGIS 154 >gi|68141196|gb|EAM94485.1| hypothetical protein FaciDRAFT_1595 [Ferroplasma acidarmanus Fer1] Length = 162 Score = 80.3 bits (198), Expect = 1e-14 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 IEA+LF + EP+ ++AE L I L + + Y+++ Sbjct: 10 RIEAILFSSKEPVKASEIAEYLNITNAEFIKAIKEISRNYENIESSLIVGQFGNSYKIKL 69 Query: 62 KPEYAEYVERLLKTERPPKLSRAALETLAIIAYR---QPITRAEIEEIRGVNSDGAIKTL 118 E+ V+ ++ E K L L+ I Y+ + I+ + + G ++ L Sbjct: 70 SEEFVPVVDPFIEKEFTEK----QLAMLSYI-YKMNGEAIS-GNLRDNFGYAYKEDLEKL 123 Query: 119 LERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLK 152 + G++ R+ Y T EF F + Sbjct: 124 KKGGMVSSRKYRNT----HKYKVTTEFHRKFNIN 153 >gi|13475236|ref|NP_106800.1| hypothetical protein msr6263 [Mesorhizobium loti MAFF303099] Length = 78 Score = 65.3 bits (159), Expect = 5e-10 Identities = 19/42 (45%), Positives = 22/42 (52%) Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEFLDYFGLKSLDDLPP 159 + GLI R PG P Y TT FL FGL++L DLP Sbjct: 1 MRSFGLIASGPRSPTPGAPYTYVTTKHFLLEFGLETLRDLPD 42 >gi|69989703|ref|ZP_00642316.1| COG1386: Predicted transcriptional regulator containing the HTH domain [Burkholderia mallei FMH] Length = 85 Score = 58.7 bits (142), Expect = 4e-08 Identities = 22/77 (28%), Positives = 32/77 (41%) Query: 2 IIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQT 61 ++E L A EPL L L +L G+ELV +A G+R Q+ Sbjct: 9 VLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQEWTGRGVELVALASGWRFQS 68 Query: 62 KPEYAEYVERLLKTERP 78 KP Y++R + R Sbjct: 69 KPAMRTYLDRCIPRSRR 85 >gi|24379105|ref|NP_721060.1| putative transcriptional regulator [Streptococcus mutans UA159] Length = 154 Score = 51.8 bits (124), Expect = 6e-06 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 10/75 (13%) Query: 64 EYAEYVERLLKTERPP-------KLSRAALETLAIIAYRQPITRAEIEEIRG---VNSDG 113 ++ +++ + E+ L+ A + TL IA QPI + ++RG Sbjct: 12 KFQDFLATYAQLEKNQHVIKGAIPLNTAEVHTLVSIAQNQPINLVGLSKVRGISRSAVTQ 71 Query: 114 AIKTLLERGLIEEVG 128 + L +GL+ +V Sbjct: 72 MVSRLESKGLLIKVP 86 >gi|68183625|ref|ZP_00556599.1| hypothetical protein JannDRAFT_0530 [Jannaschia sp. CCS1] Length = 99 Score = 50.3 bits (120), Expect = 2e-05 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYRLQ 60 IEA+LF + + E LA ++ EL VAGG+ Sbjct: 2 GQIEAVLFASASSVGREDLACVVGQEASVEALIYDIWAEFVGRR---YELARVAGGWMFY 58 Query: 61 TKPEYA 66 T+ ++A Sbjct: 59 TRTQFA 64 >MarR_Q8DV74_36-105_PF01047.12 Length = 70 Score = 47.6 bits (113), Expect = 1e-04 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 81 LSRAALETLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVG 128 L+ A + TL IA QPI + ++RG + L +GL+ +V Sbjct: 1 LNTAEVHTLVSIAQNQPINLVGLSKVRGISRSAVTQMVSRLESKGLLIKVP 51 >gi|50978532|dbj|BAD34978.1| putative transcriptional repressor [Arthrobacter globiformis] Length = 370 Score = 40.6 bits (95), Expect = 0.012 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 72 LLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEVG 128 + L+R+A+ LA I P +RA++ GV+ + L+ GL+ E+ Sbjct: 1 MAHPNPRTDLTRSAM--LAHIGSNGPTSRADLARELGVSPALVTQHTRELIADGLLVELD 58 Query: 129 RRDVP-GRPALY 139 R GRPA Sbjct: 59 HRPSQGGRPARL 70 >gi|38234449|ref|NP_940216.1| Putative DNA-biding protein [Corynebacterium diphtheriae NCTC 13129] Length = 221 Score = 39.9 bits (93), Expect = 0.021 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Query: 70 ERLLKTERPPK--LSRAALETLAIIAYRQP-ITRAEIEEIRG---VNSDGAIKTLLERGL 123 E+ + + L+ A IA P I+ +I + G S IKTL G Sbjct: 3 EKTMGPRQSRPGILTPAQERVAQAIARLGPEISLTDISRMVGGHPNASRQHIKTLENSGY 62 Query: 124 IEEVGRRDVPGRPA-LYGTTDEFLDYF 149 I +R GRPA LY T E L Sbjct: 63 ISATQKRGAAGRPAQLYSITPEGLRAL 89 >gi|56461561|ref|YP_156842.1| Primosomal protein A (replication factor Y), superfamily II helicase [Idiomarina loihiensis L2TR] Length = 736 Score = 39.5 bits (92), Expect = 0.025 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 88 TLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDV 132 LA + Y QP+ R+++ +I GV S ++TL ++G IE + Sbjct: 147 VLAALKY-QPLRRSDLTDI-GVTS-AVLRTLQDKGWIEVREQAPT 188 >gi|55232751|gb|AAV48170.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 255 Score = 39.1 bits (91), Expect = 0.037 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 87 ETLAIIAYRQP-ITRAEIEEIRGVNS---DGAIKTLLERGLIEEVGRRDVPGRPALYGTT 142 L IA RQP +++ EI + GV S I+ L++ GL+E+ GR Y T Sbjct: 15 RVLVEIAERQPAVSQGEIADAVGVTSQAVSEYIRELVDDGLVEKEGRSR-------YRVT 67 Query: 143 DE 144 E Sbjct: 68 KE 69 >gi|11497829|ref|NP_069051.1| hypothetical protein AF0213 [Archaeoglobus fulgidus DSM 4304] Length = 259 Score = 38.3 bits (89), Expect = 0.057 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 50 LVEVAGGYRLQ-----TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIE 104 L+E+ Y T E E ++RL + A +A R T +EI Sbjct: 6 LIEIKKVYNFVVTFVVTMDEIIEVLKRLGFRD-------YEARVYATLATRGEATASEIH 58 Query: 105 EIRGV---NSDGAIKTLLERGLIEEVGRRDVPGRPA 137 + GV +++L +RG+IE + R Sbjct: 59 RVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAI 94 >gi|48849841|ref|ZP_00304084.1| COG1846: Transcriptional regulators [Novosphingobium aromaticivorans DSM 12444] Length = 146 Score = 37.9 bits (88), Expect = 0.072 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%) Query: 56 GYRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVNSD 112 GY+L+ + L + L A + TL +I+ ++ E+ + I+ N Sbjct: 12 GYQLRRASAVM--MADLARELADLDLRPAEVTTLLVISENPECSQTEVGQVLAIKRANMV 69 Query: 113 GAIKTLLERGLIEEVGRRDVPGRPALYGTTDE 144 I L++RGL+E RR + GR TD+ Sbjct: 70 PIISRLMDRGLVE---RRRLDGRSHALTLTDQ 98 >gi|62179273|ref|YP_215690.1| transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 406 Score = 37.9 bits (88), Expect = 0.080 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 79 PKLSRAALETLAIIAYRQPITRAEI---EEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I PI+R +I ++ + + L+ERGLI+EV ++ G Sbjct: 16 KQLNSAAVYRL--IDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 Query: 135 -RPALYGT-TDEFL 146 R T T F Sbjct: 74 RRAISIVTETRNFH 87 >gi|51893891|ref|YP_076582.1| transcriptional repressor [Symbiobacterium thermophilum IAM 14863] Length = 391 Score = 37.9 bits (88), Expect = 0.083 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGR-RDVPG 134 +L+R A L+ I R PI+R E+ + G+ ++ LL+ GL+EE G + G Sbjct: 11 KQLNRQA--VLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEKGLGQSSGG 68 Query: 135 RP 136 RP Sbjct: 69 RP 70 >gi|59711413|ref|YP_204189.1| N-acetylglucosamine repressor [Vibrio fischeri ES114] Length = 404 Score = 37.9 bits (88), Expect = 0.085 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 79 PKLSRAALETLAIIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I + PI+R A++ ++ + + LLERGLI+EV ++ G Sbjct: 13 KQLNSAAVYRL--IDQKGPISRIQIADVSQLAPASVTKITRQLLERGLIKEVAQQASTGG 70 Query: 135 -RPALYGT-TDEFLD 147 R T T F Sbjct: 71 RRAISLTTETSPFHS 85 >gi|4980601|gb|AAD35204.1| transcriptional regulator, XylR-related [Thermotoga maritima MSB8] Length = 378 Score = 37.9 bits (88), Expect = 0.092 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Query: 88 TLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGR--RDVPGR 135 L +I PI+R++I E+ G + K L++ G I E+G ++ PGR Sbjct: 16 ILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGKNSPGR 68 >gi|15159185|gb|AAK89343.1| AGR_L_1535p [Agrobacterium tumefaciens str. C58] Length = 214 Score = 37.2 bits (86), Expect = 0.13 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 15/145 (10%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPPXXXXXXXXXXXXXXXXXXXGLELVEVAGGYR-- 58 + ALL+++ +PL +++ E L I L G R Sbjct: 52 GQVYALLYISPQPLCADEIVEALGISRSNVSMSLKELQAWNLAI-----LKHFPGDRRDF 106 Query: 59 LQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSD-GAIKT 117 T + + + L + + ++ L L I P E E+ R +KT Sbjct: 107 FTTPDDVWQILRTLAEERKKREID-PTLSVLREILMETP----ENEDERHAQRRIDEMKT 161 Query: 118 LLER--GLIEEVGRRDVPGRPALYG 140 L+E+ G ++V R + +L Sbjct: 162 LIEQLTGWYDDVKRLETERLASLLA 186 >gi|1591264|gb|AAB98552.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 261 Score = 36.8 bits (85), Expect = 0.17 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 16/81 (19%) Query: 79 PKLSRAALETLAIIAYRQP-ITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGRRDVPG 134 K + + L+ I +QP I + EI E G+ I+ L++ G ++ GR + Sbjct: 2 KKRNITEFQVLSEIIRKQPHIKQKEIAENLGITVQAVSEHIRNLVKEGYVKSRGRGE--- 58 Query: 135 RPALYGTTDEFLDYFGLKSLD 155 Y T++ GL+ L Sbjct: 59 ----YVVTEK-----GLRKLK 70 >gi|74311204|ref|YP_309623.1| transcriptional repressor of nag (N-acetylglucosamine) operon [Shigella sonnei Ss046] Length = 406 Score = 36.4 bits (84), Expect = 0.21 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 79 PKLSRAALETLAIIAYRQPITRAEI---EEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I PI+R +I ++ + + L+ERGLI+EV ++ G Sbjct: 16 KQLNSAAVYRL--IDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 Query: 135 -RPALYGT-TDEFL 146 R T T F Sbjct: 74 RRAISIVTETRNFH 87 >gi|65316950|ref|ZP_00389909.1| COG2345: Predicted transcriptional regulator [Bacillus anthracis str. A2012] Length = 188 Score = 36.4 bits (84), Expect = 0.21 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 101 AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRP-ALYGTTDE----F---LDYFGLK 152 AEI EI + + L + G I R GRP LYG +++ F F + Sbjct: 27 AEILEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRPTYLYGLSEKGEDTFPKEYKQFAID 86 Query: 153 SLDDL 157 L+DL Sbjct: 87 MLEDL 91 >gi|74018911|ref|ZP_00689530.1| Filamentation induced by cAMP protein Fic [Burkholderia ambifaria AMMD] Length = 424 Score = 36.4 bits (84), Expect = 0.24 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 64 EYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLE 120 E+ + R K+ P+ + A+E +A R+ +TRAE ++ GV+ + +++L++ Sbjct: 332 EFNPWTIRSEKSVIKPEAAALAMEF---VALRRAVTRAEFSQMLGVSDVLARRIVRSLID 388 Query: 121 RGLIEEVGRR 130 GL+ R Sbjct: 389 FGLLTSPSHR 398 >gi|18976604|ref|NP_577961.1| transcription regulatory protein, arsR family [Pyrococcus furiosus DSM 3638] Length = 187 Score = 36.4 bits (84), Expect = 0.26 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%) Query: 74 KTERPPKLSRAA-LETLAIIAYRQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEVGR 129 ++ LS ++ L ++ Y P+T +EI + G + IK L E GL+EEV Sbjct: 11 DPKQIKALSDPTRVKILELLRYH-PMTVSEISRVIGKDKSTIYRHIKALEEAGLVEEV-- 67 Query: 130 RDVPGRPALYGTTDE-FLDYFG 150 + G +YG T FL G Sbjct: 68 -EKIGNETVYGRTALIFLVRIG 88 >gi|68262921|emb|CAI36409.1| putative transcriptional regulator (MarR family) [Corynebacterium jeikeium K411] Length = 180 Score = 36.0 bits (83), Expect = 0.27 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 64 EYAEYVERLLKTERPP-KLSRAALETLAIIAYRQPITRAE---IEEIRGVNSDGAIKTLL 119 ++ RL++ ++S++ +E L I+ ++ + +R N ++ L+ Sbjct: 40 DFLSATRRLMERPNQSLEISQSEIEVLQFISQHPGCGVSDVARLRFLRASNVSATVRRLI 99 Query: 120 ERGLIE 125 GLI Sbjct: 100 NGGLIR 105 >gi|17431715|emb|CAD18392.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 186 Score = 36.0 bits (83), Expect = 0.28 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPP 27 I ALL+ + EP++ +++AE L Sbjct: 28 GQIYALLYASREPINADEIAEALGFSR 54 >gi|6002233|emb|CAB56677.1| putative MarR-family regulatory protein [Streptomyces coelicolor A3(2)] Length = 148 Score = 36.0 bits (83), Expect = 0.29 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 4/87 (4%) Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGA---IKT 117 + + R+LK L+ LA ++ R IT +E+ I GV + Sbjct: 18 VRAVISRLRRRILKASEVEDLTLGQSSVLARLSDRGSITASELAAIEGVRHQSMTATVTA 77 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDE 144 L GL+E GR L T E Sbjct: 78 LASMGLVERRP-DPDDGRRLLITLTPE 103 >TrmB_O30026_30-97_PF01978.8 Length = 68 Score = 36.0 bits (83), Expect = 0.32 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 84 AALETLAIIAYRQPITRAEIEEIRGV---NSDGAIKTLLERGLIEEVGRRDVPGRPA 137 A +A R T +EI + GV +++L +RG+IE + R Sbjct: 9 YEARVYATLATRGEATASEIHRVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAI 65 >gi|6460206|gb|AAF11936.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 403 Score = 36.0 bits (83), Expect = 0.34 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 13/91 (14%) Query: 80 KLSRAALETLA---IIAYRQPITRAEIEEIRGVNSDGAIKTLLER----GLI-EEVGRRD 131 L A LE LA +I Q + + +++R I+ L+++ G I +E G D Sbjct: 51 DLFDAILEALAERNMIPEEQLLEALQADDVRETALGQQIERLMDKLQQDGFIRKEFGDED 110 Query: 132 VPGRP-----ALYGTTDEFLDYFGLKSLDDL 157 G A + TD+ +D+ G KSL DL Sbjct: 111 GQGGAGNPGEATFQLTDKSIDFLGYKSLRDL 141 >gi|23494670|dbj|BAC19636.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 153 Score = 36.0 bits (83), Expect = 0.34 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 60 QTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQP--ITR-AEIEEIRGVNSDGAIK 116 + +P + + LS L L+ +A P I+R AE+E+IR + A+ Sbjct: 12 RVRPALTKLYVLYFRRSANSDLSGPQLTILSRLAEHGPSRISRIAELEDIRMPTASNALH 71 Query: 117 TLLERGLIE 125 L + L+E Sbjct: 72 HLEQLKLVE 80 >gi|69300447|ref|ZP_00622012.1| ROK [Silicibacter sp. TM1040] Length = 404 Score = 35.6 bits (82), Expect = 0.36 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%) Query: 78 PPKLSRAALETLAIIAY----RQPITRAEIEEIRGVN---SDGAIKTLLERGLIEEVGRR 130 P LSR TL+ I P++RA + ++ G + + +L + G ++ VGR Sbjct: 4 PLNLSRRM--TLSNIVQAITTYGPVSRASVAKMTGYSKQTVSEVVSSLEDDGWVQTVGRT 61 Query: 131 DVP-GR 135 + GR Sbjct: 62 EGNVGR 67 >gi|55629228|ref|XP_527859.1| PREDICTED: similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma [Pan troglodytes] Length = 851 Score = 35.6 bits (82), Expect = 0.38 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Query: 57 YRLQTKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEI-------RGV 109 YR +K E Y+ RL + + L A E LA+I Y P+ I + RGV Sbjct: 467 YRF-SKKELFHYLLRLRQIKDET-LQAAVREILALIGYVDPVKGRGIRILSIDGGGTRGV 524 Query: 110 NSDGAIKTLLE 120 + ++ L+E Sbjct: 525 VALQTLRKLVE 535 >gi|68189513|gb|EAN04179.1| ROK [Mesorhizobium sp. BNC1] Length = 393 Score = 35.6 bits (82), Expect = 0.39 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 82 SRAALETLAIIAY--RQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRD-VPGR 135 SR +++ I+A + ++RAE+ + G + L E G IE VGR GR Sbjct: 10 SRKQIQSAVILAVMDNEQVSRAELARLSGLSKQTMSDVFRDLEEDGWIEVVGRTSGTVGR 69 Query: 136 -PALYGTTDEFLDYFG 150 A+Y + FG Sbjct: 70 SAAVYELSPNRALLFG 85 >MarR_Q8XQI4_23-83_PF01047.12 Length = 61 Score = 35.6 bits (82), Expect = 0.42 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 1 AIIEALLFVAGEPLSLEQLAELLEIPP 27 I ALL+ + EP++ +++AE L Sbjct: 6 GQIYALLYASREPINADEIAEALGFSR 32 >gi|1924925|emb|CAA96093.1| xyl repressor [Bacillus megaterium] Length = 388 Score = 35.6 bits (82), Expect = 0.43 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 92 IAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG--RPALYG 140 I P++RA + EI G + TLLE+ I E+G G RP + Sbjct: 24 ILKNSPVSRATLSEITGLNKSTVSSQVNTLLEKDFIFEIGAGQSRGGRRPVMLV 77 >gi|47223488|emb|CAF97975.1| unnamed protein product [Tetraodon nigroviridis] Length = 612 Score = 35.6 bits (82), Expect = 0.44 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 66 AEYVERLLKTERPPKL--SRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKTLLERGL 123 A+ + P L A LE L I+ Q IT+ I+E RGV + + L Sbjct: 157 ADLLAVNADGNMPYDLCEDEATLELLEIVMAEQGITQDRIDEFRGVKEAAMLADIQA--L 214 Query: 124 IEEVG---RRDVPGRPAL 138 ++ G RD G L Sbjct: 215 VQSGGDLNARDDNGATLL 232 >gi|27359779|gb|AAO08718.1| Transcriptional regulator; sugar kinase [Vibrio vulnificus CMCP6] Length = 404 Score = 35.2 bits (81), Expect = 0.47 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 79 PKLSRAALETLAIIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I + PI+R A++ ++ + + LLERGLI+EV ++ G Sbjct: 13 KQLNSAAVYRL--IDQQGPISRIQVADVSQLAPASVTKITRQLLERGLIKEVAQQASTGG 70 Query: 135 -RPALYGT 141 R T Sbjct: 71 RRAISLTT 78 >gi|75829805|ref|ZP_00759097.1| COG1940: Transcriptional regulator/sugar kinase [Vibrio cholerae MO10] Length = 404 Score = 35.2 bits (81), Expect = 0.47 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 79 PKLSRAALETLAIIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I + PI+R A++ ++ + + LLERGLI+EV ++ G Sbjct: 13 KQLNSAAVYRL--IDQQGPISRIQVADVSQLAPASVTKITRQLLERGLIKEVAQQASTGG 70 Query: 135 -RPALYGT 141 R T Sbjct: 71 RRAISLTT 78 >gi|75854975|ref|ZP_00762641.1| COG1940: Transcriptional regulator/sugar kinase [Vibrio sp. Ex25] Length = 404 Score = 35.2 bits (81), Expect = 0.47 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%) Query: 79 PKLSRAALETLAIIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I + PI+R A++ ++ + + LLERGLI+EV ++ G Sbjct: 13 KQLNSAAVYRL--IDQQGPISRIQVADVSQLAPASVTKITRQLLERGLIKEVAQQASTGG 70 Query: 135 -RPALYGT 141 R T Sbjct: 71 RRAISLTT 78 >gi|18977848|ref|NP_579205.1| hypothetical protein PF1476 [Pyrococcus furiosus DSM 3638] Length = 159 Score = 35.2 bits (81), Expect = 0.49 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 25/105 (23%) Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRG-----VNSDGAI 115 TK Y+ +LLK + AY R E+++ G V+S + Sbjct: 64 TKEMLWMYILKLLKDRP-------------MYAYE---IRNELKKRFGFEPATVSSYVVL 107 Query: 116 KTLLERGLIEEVGRRDVPGRP--ALYGTTDEFLDYF--GLKSLDD 156 L E G + GRP Y T++ G+++++D Sbjct: 108 YRLEEGGYVSSEWHESEAGRPSRKYYRLTEKGEKLLEKGIETIED 152 >gi|71366923|ref|ZP_00657458.1| conserved hypothetical protein [Nocardioides sp. JS614] Length = 254 Score = 35.2 bits (81), Expect = 0.51 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 96 QPITRAEIEEIRG---VNSDGAIKTLLERGLI-EEVGRRDVPGRPALY 139 QP+T A + I G + L+ RGL+ GR GRPA Sbjct: 67 QPLTLAALARITGLHPNTVREHLDALVRRGLVRRLAGRPQGRGRPAYL 114 >gi|67985648|gb|EAM73502.1| regulatory protein, MarR [Kineococcus radiotolerans SRS30216] Length = 161 Score = 35.2 bits (81), Expect = 0.56 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 70 ERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNSDGAIKT---LLERGLIEE 126 RL + +LS A LA + + P T E+ E V +T L+E+GL+E Sbjct: 41 RRLRAEKSVDELSDAQFSVLAHLFTQGPRTPGELAEAEHVRPPSMTRTIAGLVEQGLVER 100 Query: 127 VGRRDVPGRPALYGTTD 143 G GR L + Sbjct: 101 AGH-PDDGRQVLITVSP 116 >gi|54308222|ref|YP_129242.1| putative N-acetylglucosamine repressor [Photobacterium profundum SS9] Length = 404 Score = 35.2 bits (81), Expect = 0.58 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 79 PKLSRAALETLAIIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG- 134 +L+ AA+ L I + PI+R A++ + + + LLERGLI+EV ++ G Sbjct: 13 KQLNSAAVYRL--IDLQGPISRIQVADVSHLAPASVTKITRQLLERGLIKEVAQQASTGG 70 Query: 135 -RPALYGT 141 R T Sbjct: 71 RRAISLTT 78 >gi|15607877|ref|NP_215251.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] Length = 165 Score = 34.9 bits (80), Expect = 0.62 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%) Query: 68 YVERLLKTERPPKLSRAALETLAIIAYRQ----PITR-AEIEEIRGVNSDGAIKTLLERG 122 + R+ RP LS + E L ++A+ + PIT+ ++ ++ + AI+ L G Sbjct: 41 LLARVETALRPYDLSFSRFELLRLLAFSRIGALPITKASDRLQVHVTSVTHAIRRLEADG 100 Query: 123 LIEEVGRRDVPGRPALYGTTDE 144 L+ V GR L T+ Sbjct: 101 LVRRVPH-PTDGRTTLVQITEL 121 >gi|68174065|ref|ZP_00547336.1| regulatory protein, MarR [Frankia sp. CcI3] Length = 308 Score = 34.9 bits (80), Expect = 0.70 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 69 VERLLKTERPPKLSRAALETLAIIAYRQPITRAEIEEIRGVNS---DGAIKTLLERGLIE 125 + R ++ ER +L+ LA + P+T EI V I L GL+E Sbjct: 187 LSRRMRQERSSRLTPTQTSALATLERHGPMTLGEIAAHERVQPPSMTRVIAHLAVTGLVE 246 Query: 126 EVGRRDVPGRPALYGTTD 143 GR + T+ Sbjct: 247 RRPH-PTDGRQVIAEVTE 263 >gi|51594904|ref|YP_069095.1| putative transcriptional repressor [Yersinia pseudotuberculosis IP 32953] Length = 337 Score = 34.9 bits (80), Expect = 0.70 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%) Query: 82 SRAALETLAIIA---YRQPITRAEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPGRPAL 138 S + E LA +A Y +T+ +I E+ G+ + LLE+G V R + R Sbjct: 31 SMSEEELLARVAWFYYHDGLTQGDIGELLGLA-RLKVSRLLEKGRQSGVIRVQINSR--- 86 Query: 139 YG----TTDEFLDYFGLKSLDDLPPL 160 Y + +FGLK + LP L Sbjct: 87 YEGCLELENTLQQHFGLKHIRILPSL 112 >gi|18978434|ref|NP_579791.1| hypothetical protein PF2062 [Pyrococcus furiosus DSM 3638] Length = 94 Score = 34.9 bits (80), Expect = 0.73 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 78 PPKLSRAALETLAIIAYRQPITRAEIEEIRG-VNSDGAIKTLLERGLIEEVGRRDVPGRP 136 +L++ + L I +T+ ++ EI G V + IK L ++GLIE R GR Sbjct: 33 KVELTKLERDVLEFILRNGEVTQKKLAEIFGRVKTCRIIKNLEKKGLIE----RKKNGRT 88 Query: 137 AL 138 + Sbjct: 89 YI 90 >gi|45435778|gb|AAS61335.1| putative N-acetylglucosamine regulatory protein [Yersinia pestis biovar Medievalis str. 91001] Length = 421 Score = 34.9 bits (80), Expect = 0.74 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 91 IIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVG-RRDVPGRPALYGTTDE 144 +I + PI+R A++ ++ + + LLERGLI+EV + GR A+ T+ Sbjct: 39 LIDQQGPISRIQIADLSQLAPASVTKITRQLLERGLIKEVDQQASTGGRRAISIVTEN 96 >gi|10173314|dbj|BAB04419.1| transcriptional repressor of the xylose operon [Bacillus halodurans C-125] Length = 388 Score = 34.5 bits (79), Expect = 0.80 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIEEIRG---VNSDGAIKTLLERGLIEEVGRRDVPG- 134 K++R A+ L I +Q I+R+++ +I V + +LLE LI E + G Sbjct: 10 KKMNRRAI--LEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSGG 67 Query: 135 -RPALYGTTDEFLDYFGLK 152 +P L + G+ Sbjct: 68 RKPILLTLNENAAFTLGID 86 >gi|12720964|gb|AAK02767.1| NagC [Pasteurella multocida subsp. multocida str. Pm70] Length = 407 Score = 34.5 bits (79), Expect = 0.82 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Query: 91 IIAYRQPITR---AEIEEIRGVNSDGAIKTLLERGLIEEVGRRDVPG 134 +I + PI+R +E+ ++ + + LL RGLI+EV +++ G Sbjct: 24 LIDQQGPISRIQISELSQLAPASVTKITRHLLARGLIKEVEQQESTG 70 >gi|67928191|ref|ZP_00521380.1| Peptidase S9, prolyl oligopeptidase active site region [Solibacter usitatus Ellin6076] Length = 750 Score = 34.5 bits (79), Expect = 0.84 Identities = 14/33 (42%), Positives = 18/33 (54%) Query: 79 PKLSRAALETLAIIAYRQPITRAEIEEIRGVNS 111 L L LA A +QPIT A++ +IR V S Sbjct: 6 ASLGLPVLAMLASAAGKQPITGADVLKIRNVAS 38 >gi|74016335|ref|ZP_00686961.1| regulatory protein, MarR [Burkholderia ambifaria AMMD] Length = 156 Score = 34.5 bits (79), Expect = 0.92 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 61 TKPEYAEYVERLLKTERPPKLSRAALETLAIIAYRQPITRAEI---EEIRGVNSDGAIKT 117 + ++ + RL + P L+ + L + P T + + E +R + + T Sbjct: 20 LRISVSKLMRRLREQTHPNDLTSSQKSVLLRLDRDGPATVSALARAESVRPQSMRVTVAT 79 Query: 118 LLERGLIEEVGRRDVPGRPALYGTTDEF 145 L RG + GR L T +F Sbjct: 80 LEARGAVSGAP-DPTDGRQTLIALTPDF 106 >gi|62423215|ref|ZP_00378384.1| COG1846: Transcriptional regulators [Brevibacterium linens BL2] Length = 149 Score = 34.5 bits (79), Expect = 0.96 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 77 RPPKLSRAALETLAIIAYRQPITRAEIEE---IRGVNSDGAIKTLLERGLI 124 R L+ A E LA I QPIT+ ++ + G + L GLI Sbjct: 30 RQFDLTLAQFEALAHIRNFQPITQTDLARGLTVTGGGISRMLSRLESEGLI 80 Database: nr95_Pfam18 Posted date: Oct 20, 2005 3:49 PM Number of letters in database: 830,037,145 Number of sequences in database: 2,959,546 Lambda K H 0.314 0.199 0.603 Lambda K H 0.267 0.0608 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,412,078,970 Number of Sequences: 2959546 Number of extensions: 71086315 Number of successful extensions: 170373 Number of sequences better than 1.0: 384 Number of HSP's better than 1.0 without gapping: 1299 Number of HSP's successfully gapped in prelim test: 183 Number of HSP's that attempted gapping in prelim test: 166391 Number of HSP's gapped (non-prelim): 1510 length of query: 160 length of database: 830,037,145 effective HSP length: 116 effective length of query: 44 effective length of database: 486,729,809 effective search space: 21416111596 effective search space used: 21416111596 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 79 (34.5 bits)