hmmsearch - search a sequence database with a profile HMM HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: plantsESC2.hmm [plantsESC2] Sequence database: /nfs/scrap/common/proteome/Dd.fa - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query HMM: plantsESC2|| [HMM has been calibrated; E-values are empirical estimates] Scores for complete sequences (score includes all domains): Sequence Description Score E-value N -------- ----------- ----- ------- --- JC3V1_0C0008_11033 -7.3 8.2e-05 1 JC1V1_0C0002_03880 -20.6 0.0018 1 JC1V1_0C0002_03866 -30.4 0.017 1 BC4V1_0C0084_13350 -35.0 0.05 1 BC5V1_0C0122_08655 -37.8 0.096 1 BC5V1_0C0115_00019 -37.8 0.096 1 BC6V1_0C0017_05916 -40.5 0.18 1 EC6V1_0C0008_08329 -40.7 0.19 1 JC1V1_0C0003_04232 -46.9 0.8 1 JC3V1_0C0048_01213 -49.2 1.4 1 EC6V1_0C0004_08116 -49.3 1.4 1 JC1V1_0C0002_03869 -50.9 2 1 JC3V1_0C0038_00016 -51.2 2.2 1 JC2V1_0C0016_00066 -52.7 3.1 1 BC6V1_0C0017_05956 -53.0 3.3 1 BC4V1_0C0018_07713 -53.1 3.3 1 JC1V1_0C0002_03714 -55.3 5.6 1 JC1V1_0C0002_04041 -56.0 6.5 1 BC6V1_0C0021_06254 -56.5 7.4 1 JC2V1_0C0042_06144 -57.0 8.2 1 JC2V1_0C0022_01555 -57.0 8.3 1 [no more scores below E threshold] Parsed for domains: Sequence Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- JC3V1_0C0008_11033 1/1 336 438 .] 1 96 [] -7.3 8.2e-05 JC1V1_0C0002_03880 1/1 764 839 .. 1 96 [] -20.6 0.0018 JC1V1_0C0002_03866 1/1 419 518 .. 1 96 [] -30.4 0.017 BC4V1_0C0084_13350 1/1 5 94 .. 1 96 [] -35.0 0.05 BC5V1_0C0122_08655 1/1 375 447 .. 1 96 [] -37.8 0.096 BC5V1_0C0115_00019 1/1 375 447 .. 1 96 [] -37.8 0.096 BC6V1_0C0017_05916 1/1 98 196 .. 1 96 [] -40.5 0.18 EC6V1_0C0008_08329 1/1 803 880 .. 1 96 [] -40.7 0.19 JC1V1_0C0003_04232 1/1 1914 1987 .. 1 96 [] -46.9 0.8 JC3V1_0C0048_01213 1/1 265 348 .. 1 96 [] -49.2 1.4 EC6V1_0C0004_08116 1/1 2803 2896 .. 1 96 [] -49.3 1.4 JC1V1_0C0002_03869 1/1 478 559 .. 1 96 [] -50.9 2 JC3V1_0C0038_00016 1/1 682 756 .. 1 96 [] -51.2 2.2 JC2V1_0C0016_00066 1/1 354 436 .. 1 96 [] -52.7 3.1 BC6V1_0C0017_05956 1/1 7 84 .. 1 96 [] -53.0 3.3 BC4V1_0C0018_07713 1/1 283 353 .. 1 96 [] -53.1 3.3 JC1V1_0C0002_03714 1/1 2996 3057 .. 1 96 [] -55.3 5.6 JC1V1_0C0002_04041 1/1 1079 1152 .. 1 96 [] -56.0 6.5 BC6V1_0C0021_06254 1/1 686 747 .. 1 96 [] -56.5 7.4 JC2V1_0C0042_06144 1/1 1312 1385 .. 1 96 [] -57.0 8.2 JC2V1_0C0022_01555 1/1 517 595 .. 1 96 [] -57.0 8.3 Alignments of top-scoring domains: JC3V1_0C0008_11033: domain 1 of 1, from 336 to 438: score -7.3, E = 8.2e-05 *->slppeqislDekpEsephkdRe.......KIVIsiQDKDGqkQfRvy lppe s + +++++ ++ +++++K+ + + fR+ JC3V1_0C00 336 NLPPELTSTTTTT-TTTTTTAApiddgtpKVFLQVRYENNVHKFRIG 381 kDEKFekLfKvYAkKvkL...dpqdLvFiFDGDKInpssTPsdLGlEDeD + + F kL+ + +kK++ + +d + +v+ FDG np++TP+d ++EDe JC3V1_0C00 382 MADPFSKLVTALTKKINTpipDGKKIVLKFDGVILNPNTTPEDEDMEDEF 431 mIEVhrKss<-* +I +K JC3V1_0C00 432 LIDAFLK-- 438 JC1V1_0C0002_03880: domain 1 of 1, from 764 to 839: score -20.6, E = 0.0018 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek s+ is+ e++ KI+ k Fek JC1V1_0C00 764 SKEFIDISINESS--SNIRNTYKIC---------------KTHSFEK 793 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< L+ ++ +L q F G I+p +TPsdL + D D+I + s+ JC1V1_0C00 794 LINAFCNQFNLQTQQYRFTYQGRLISPYETPSDLYMNDSDII---LASR 839 -* JC1V1_0C00 - - JC1V1_0C0002_03866: domain 1 of 1, from 419 to 518: score -30.4, E = 0.017 *->slppeqislDekpEsephkdRe.KIVIsi.....QDKDGqkQfRvyk p q ++ s+p e+KI I + + ++Q K + v JC1V1_0C00 419 QQSPQQQQQTPSS-SKPVRNGEhKISIGFvslksQKKEITTFHGVGL 464 DEKFekLfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEV k++K+Y k + + + F G I +++TP dLG+ D+D I V JC1V1_0C00 465 TKSLFKVIKAYSKLKNVEISSVRFLYNGNPI-LNETPTDLGMKDGDTITV 513 hrKss<-* + JC1V1_0C00 514 QGQQN 518 BC4V1_0C0084_13350: domain 1 of 1, from 5 to 94: score -35.0, E = 0.05 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek ++ p + + e p ++ + + Q G f + k BC4V1_0C00 5 KEEPGVNG--EAP---VKDEHINLKVKNQG-GGEVFFKIKRSTPLKK 45 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< L +Y L+ + F FDG + +TP LG+E+eD + ++ BC4V1_0C00 46 LMEAYCQRQGLNYASCRFLFDGVRVKEDATPNQLGMENEDVLDCALMQT 94 -* BC4V1_0C00 - - BC5V1_0C0122_08655: domain 1 of 1, from 375 to 447: score -37.8, E = 0.096 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek s + i++ k+ e R+ I kQ F BC5V1_0C01 375 SNKTIDIIIESKT--ENLYCRVPI----------KQ-------NFSE 402 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< ++K++ k + + s TP +L++ D+D+IE ++ BC5V1_0C01 403 IIKSFSKR----HPNFKYYYYNNQVYNSDTPKSLDMDDDDIIEAREEVA 447 -* BC5V1_0C01 - - BC5V1_0C0115_00019: domain 1 of 1, from 375 to 447: score -37.8, E = 0.096 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek s + i++ k+ e R+ I kQ F BC5V1_0C01 375 SNKTIDIIIESKT--ENLYCRVPI----------KQ-------NFSE 402 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< ++K++ k + + s TP +L++ D+D+IE ++ BC5V1_0C01 403 IIKSFSKR----HPNFKYYYYNNQVYNSDTPKSLDMDDDDIIEAREEVA 447 -* BC5V1_0C01 - - BC6V1_0C0017_05916: domain 1 of 1, from 98 to 196: score -40.5, E = 0.18 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQ....fRvykDE +p q l ++ +p + e I I i q ++ ++f + k BC6V1_0C00 98 QPQPQQTQLQQSANNTPPPSVENITIYILPVGIQTTslppFLMKKHT 144 KFekLfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhr F +Lf + + L+F F D I+p+ P d Gl + I V++ BC6V1_0C00 145 LFKRLFGHISQRFSIEESQLIFLFQ-DRIDPEQCPNDIGLNSGETIVVRK 193 Kss<-* + BC6V1_0C00 194 LKN 196 EC6V1_0C0008_08329: domain 1 of 1, from 803 to 880: score -40.7, E = 0.19 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek +++ +i+l k+ +++ K+ + + + ++ EC6V1_0C00 803 KKQIKHITLSVKS--NESEVFIKV-------AETTAL--------GR 832 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< L+ +Y K ++ +F G I s P +LG+ D I V EC6V1_0C00 833 LINAYCQKMGIQKSLNSFKYKGKDIETSN-PKELGMKENDVIDVIPLNA 880 -* EC6V1_0C00 - - JC1V1_0C0003_04232: domain 1 of 1, from 1914 to 1987: score -46.9, E = 0.8 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + q+ +D+++ s+ ++ R V K + JC1V1_0C00 1914 LQKSNQEKIDQSTLSKKKTLRDSFV------------------KYSR 1942 LfKvYAkKv..kLdpqdLvFiFDGDKInpssTPsdLGlEDeDm..IEVhr L+ +Y kKv ++L+ q ++ + ++s T +L +e +++IE ++ JC1V1_0C00 1943 LLDSYLKKVlnNLEIQEISQS-----LSSSKTNNSL---NEIIskIECKK 1984 Kss<-* Ks JC1V1_0C00 1985 KSI 1987 JC3V1_0C0048_01213: domain 1 of 1, from 265 to 348: score -49.2, E = 1.4 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + ++ +l ++ K +QD + +f E ek JC3V1_0C00 265 IIASLDHILPQEY--------IKSLSIFQDHAPFVTF-----EEVEK 298 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPs....dLGlEDeDmIEVhr LfK+ + K p d+ F In++s + ++ L lE++ +IEV JC3V1_0C00 299 LFKIETGK---HPDDMFIDFERLPINSASLAQvhkaKLKLENDEIIEVAV 345 Kss<-* K JC3V1_0C00 346 KVQ 348 EC6V1_0C0004_08116: domain 1 of 1, from 2803 to 2896: score -49.3, E = 1.4 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek ++p+q ++ ++ e + + + + ++ Fe EC6V1_0C00 2803 DKNPSQMGIENET--EITAILLLVRVDASYNGTTVPYFLSTTTSFES 2847 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< Lf + +Kvk d + +F+ G + TP+ + + I V s EC6V1_0C00 2848 LFHRFCEKVKIDRKSTIFSYEGKRLLNEQTPEGIYMKPHASITVINHGS 2896 -* EC6V1_0C00 - - JC1V1_0C0002_03869: domain 1 of 1, from 478 to 559: score -50.9, E = 2 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + + i++ se+ k KI si +++ k JC1V1_0C00 478 DKLSNTITVTLID-SETLK---KIHFSI----ARHS-------PLKK 509 LfKvYA.kKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss L+ + +kK p ++ F F G I+p T dL D+D I JC1V1_0C00 510 LINCFIeKKSTVHPNNINFTFKGKPISPQNTCCDLSINDGDFIDAIIQNE 559 <-* JC1V1_0C00 - - JC3V1_0C0038_00016: domain 1 of 1, from 682 to 756: score -51.2, E = 2.2 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + ++ s D ++ I+ i fRv k K k JC3V1_0C00 682 KVQTNTRSSDGSS----------ICKFI-------HFRVNKKVKLNK 711 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< L A K k + L F+F G + +L D+D+I + ++ JC3V1_0C00 712 L--EDATKEKININHLKFSFNGKPYTTNDSILSLNIKDGDII--LAEQT 756 -* JC3V1_0C00 - - JC2V1_0C0016_00066: domain 1 of 1, from 354 to 436: score -52.7, E = 3.1 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek ++ e+ e h + V si + +y D KF k JC2V1_0C00 354 QENNNNNNYNEEKKNEIHISQIRSVLSIFERRPEDLVKLYIDSKFYK 400 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< kL+++ L+ F +++s T L E E +rK s JC2V1_0C00 401 -------DNKLELKALIKHF----VDSSKTYKILNEEESE--ETLRKVS 436 -* JC2V1_0C00 - - BC6V1_0C0017_05956: domain 1 of 1, from 7 to 84: score -53.0, E = 3.3 *->slppeqislDekpEsephkdReKIVIsiQDK...DGqkQfRvykDEK s+ + s ++E e kd K+ +QD +++ + + v EK BC6V1_0C00 7 SESSYNSSSSSSSENESNKDEKKVL--FQDDsesEAENEIKV--NEK 49 FekLfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGl.EDeDmIEVhr Fe+ AkK+ ++ I++s+T+++ + +ED+D BC6V1_0C00 50 FERMYE--AKKAHNEL-----------ISASTTLEEDEQsEDDD-----G 81 Kss<-* K BC6V1_0C00 82 KFD 84 BC4V1_0C0018_07713: domain 1 of 1, from 283 to 353: score -53.1, E = 3.3 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + +e+ s+De + + R + + ++ k ek BC4V1_0C00 283 KNYTEPKSIDEFE--NEFSKRNLVMVFL------STLWCDKCKECEK 321 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< ++K+YA+ + q + Fi K+++ P IEV + s BC4V1_0C00 322 VLKIYAE----SQQQIMFI----KVDLDKLPN---------IEVCKNVS 353 -* BC4V1_0C00 - - JC1V1_0C0002_03714: domain 1 of 1, from 2996 to 3057: score -55.3, E = 5.6 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + p +i + ++ + d eKIV s+Q+ DE e JC1V1_0C00 2996 IISPKSIKVLQLNFIRSSIDCEKIVNSFQE----------SDE--EL 3030 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< ++ v A+ v ++ + iF E ++K JC1V1_0C00 3031 ILIVVADMVTCNQNQVTYIF----------------------ELLTKLN 3057 -* JC1V1_0C00 - - JC1V1_0C0002_04041: domain 1 of 1, from 1079 to 1152: score -56.0, E = 6.5 *->slppeqislD.ekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFe + + q+s D+e + s +++ eK Q G+k f v++ Fe JC1V1_0C00 1079 DEDSNQDSEDsEDS-SDDSEENEK-----QMEEGRKMFQVFASKMFE 1119 .kLfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKs ++++ +Y + L+ q L lE e m E ++K+ JC1V1_0C00 1120 qRVLAAYKERLVLERQ-----------------RHL-LEEEEMNEKREKQ 1151 s<-* JC1V1_0C00 1152 L 1152 BC6V1_0C0021_06254: domain 1 of 1, from 686 to 747: score -56.5, E = 7.4 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek s p q++l ++ p + +V+ + D++kQ ek BC6V1_0C00 686 SNDPYQEVLQRSS--NPDAEYWCVVVGVPREDATKQ---------EK 721 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< L+ + +++L+ + ps + d l Kss BC6V1_0C00 722 LIN------NTQVSLLI-------VHPSNSLLDPSL----------KSS 747 -* BC6V1_0C00 - - JC2V1_0C0042_06144: domain 1 of 1, from 1312 to 1385: score -57.0, E = 8.2 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek s+++e+i l +++ I i DK R ++ F k JC2V1_0C00 1312 SKQSESIELFKSS------------INIVDKFPDFYSRAFMRYSFSK 1346 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlED..eDmIEVhrKs ++ +K pq + +i ++ +s L++ + D+I +r JC2V1_0C00 1347 YYRIKKDK----PQEIKLI--------NEALSILEMHNivSDLITTLRER 1384 s<-* + JC2V1_0C00 1385 R 1385 JC2V1_0C0022_01555: domain 1 of 1, from 517 to 595: score -57.0, E = 8.3 *->slppeqislDekpEsephkdReKIVIsiQDKDGqkQfRvykDEKFek + i + ++ +++ V+s DK +R+y + k JC2V1_0C00 517 DNKKSKIRISKML--LHSESGIFAVVSNDDK-----IRLYDIDT-RK 555 LfKvYAkKvkLdpqdLvFiFDGDKInpssTPsdLGlEDeDmIEVhrKss< L++ + vk ++ +vF+ DG I +s+ + + V+ +s JC2V1_0C00 556 LVRYFN--VKGNVNSIVFSHDGRWIIASTQVDS-------VVRVLDIPS 595 -* JC2V1_0C00 - - Histogram of all scores: score obs exp (one = represents 10 sequences) ----- --- --- -148 2 0|= -147 0 0| -146 2 0|= -145 0 0| -144 6 0|= -143 11 0|== -142 15 0|== -141 26 0|=== -140 21 0|=== -139 26 0|=== -138 22 0|=== -137 24 0|=== -136 38 0|==== -135 25 0|=== -134 39 0|==== -133 41 0|===== -132 36 0|==== -131 48 0|===== -130 33 0|==== -129 38 0|==== -128 48 0|===== -127 56 0|====== -126 58 0|====== -125 46 0|===== -124 50 0|===== -123 67 0|======= -122 51 0|====== -121 57 0|====== -120 59 0|====== -119 67 0|======= -118 73 0|======== -117 71 0|======== -116 75 0|======== -115 80 0|======== -114 79 0|======== -113 74 0|======== -112 98 0|========== -111 86 0|========= -110 84 0|========= -109 120 0|============ -108 89 0|========= -107 121 0|============= -106 129 0|============= -105 131 0|============== -104 134 0|============== -103 176 0|================== -102 166 0|================= -101 211 0|====================== -100 195 0|==================== -99 232 3|*======================= -98 296 17|=*============================ -97 314 60|=====*========================== -96 322 154|===============*================= -95 356 312|===============================*==== -94 374 519|====================================== * -93 396 743|======================================== * -92 417 942|========================================== * -91 498 1084|================================================== * -90 531 1156|====================================================== * -89 527 1159|===================================================== * -88 568 1108|========================================================= * -87 517 1018|==================================================== * -86 528 908|===================================================== * -85 557 790|======================================================== * -84 530 675|===================================================== * -83 456 567|============================================== * -82 484 471|===============================================*= -81 376 388|======================================* -80 334 316|===============================*== -79 319 257|=========================*====== -78 293 207|====================*========= -77 239 167|================*======= -76 182 134|=============*===== -75 167 107|==========*====== -74 142 85|========*====== -73 89 68|======*== -72 76 54|=====*== -71 80 43|====*=== -70 60 34|===*== -69 44 27|==*== -68 31 21|==*= -67 33 17|=*== -66 22 13|=*= -65 17 10|*= -64 18 8|*= -63 11 6|*= -62 10 5|* -61 9 4|* -60 8 3|* -59 4 2|* -58 4 2|* -57 2 1|* -56 2 1|* -55 0 1|* -54 2 0|= -53 1 0|= -52 1 0|= -51 1 0|= -50 2 0|= -49 0 0| -48 0 0| > -47 9 -|= % Statistical details of theoretical EVD fit: mu = -88.9635 lambda = 0.2319 chi-sq statistic = 8211.6094 P(chi-square) = 0 Total sequences searched: 13695 Whole sequence top hits: tophits_s report: Total hits: 119 Satisfying E cutoff: 21 Total memory: 17K Domain top hits: tophits_s report: Total hits: 119 Satisfying E cutoff: 119 Total memory: 63K