hmmsearch - search a sequence database with a profile HMM HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: animalESC2_g.hmm [animalESC2] Sequence database: /nfs/scrap/common/proteome/Kl.fa - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query HMM: animalESC2|| [HMM has been calibrated; E-values are empirical estimates] Scores for complete sequences (score includes all domains): Sequence Description Score E-value N -------- ----------- ----- ------- --- KLLA-CDS2683.1 Kluyveromyces lactis KLLA-CDS2683.1 39 -41.1 0.012 1 KLLA-CDS3833.1 Kluyveromyces lactis KLLA-CDS3833.1 26 -70.1 2.3 1 KLLA-CDS6675.1 Kluyveromyces lactis KLLA-CDS6675.1 93 -72.1 3.3 1 KLLA-CDS0295.1 Kluyveromyces lactis KLLA-CDS0295.1 10 -73.1 3.9 1 KLLA-CDS0424.1 Kluyveromyces lactis KLLA-CDS0424.1 95 -73.7 4.4 1 KLLA-CDS2276.1 Kluyveromyces lactis KLLA-CDS2276.1 44 -74.4 5 1 KLLA-CDS0988.1 Kluyveromyces lactis KLLA-CDS0988.1 69 -77.3 8.5 1 [no more scores below E threshold] Parsed for domains: Sequence Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KLLA-CDS2683.1 1/1 231 391 .. 1 186 [] -41.1 0.012 KLLA-CDS3833.1 1/1 65 211 .. 1 186 [] -70.1 2.3 KLLA-CDS6675.1 1/1 3 86 .. 1 186 [] -72.1 3.3 KLLA-CDS0295.1 1/1 490 633 .. 1 186 [] -73.1 3.9 KLLA-CDS0424.1 1/1 392 538 .. 1 186 [] -73.7 4.4 KLLA-CDS2276.1 1/1 161 311 .. 1 186 [] -74.4 5 KLLA-CDS0988.1 1/1 451 578 .. 1 186 [] -77.3 8.5 Alignments of top-scoring domains: KLLA-CDS2683.1: domain 1 of 1, from 231 to 391: score -41.1, E = 0.012 *->eneeftvkvrIlDceseierlklRmsdile.kFeevfkelAsklgvd + +e+tv ++I ++ + +k i e+ +++ +e ++ KLLA-CDS26 231 SEYETTVDLVIV-HSADANNYKTEYKRIREsRLQSFLDE----SNIE 272 pscIl........LllgdnevgpsdTPhslglkpadiidgvvlaskeeke + + l+++ +++++ l ++e+ P k a d v++ +++ KLLA-CDS26 273 EQDPLeqpardekFKLFEKELE--SAP-----KLAERTDDVIDLLDSDI- 314 paakissevetieeksdkisiKVQgkkrkkpLevsvkkdttlkvlmiKv. e+s++i++ + +k k ++sv ++tt+ ++ +++ KLLA-CDS26 315 -------------ESSNSIRLT-LIDKANKRTSISVWPNTTFTEIANRYk 350 .aEalgldkeEnIPSlrkiklfFDGeklknnndtpedLdLEgdDiIevwf ++ +l +d+ + l FD+e l + t +LE dDi+e+++ KLLA-CDS26 351 tISSLSEDA--------NVLLIFDNEELNPA-ATVLSEGLEEDDILEIKI 391 <-* KLLA-CDS26 - - KLLA-CDS3833.1: domain 1 of 1, from 65 to 211: score -70.1, E = 2.3 *->eneeftvkvr.IlDceseierlklRmsdile..kFeev..fkelAsk +++ + + v + D e ++ ++ lR+ ++ + + +v+++ l s+ KLLA-CDS38 65 DARRIGLNVDgLSDSELRLRKRDLRRPQFVLdiTQGKVeeRVNLDSR 111 lgvdpscIlLllgdnevgpsdTPhslglkpadiidgvvlaskeekepaak l + l++ +++ v +v+a e+ KLLA-CDS38 112 LAILQDISLFSEYGRDVT------------------EVVAQWEDR----- 138 issevetieeksdkisiKVQgkkrkkpLevsvkkdttlkvlmiKvaEalg s e + i ++d+is K +k ++ p + + + ++ + ++ +a + KLLA-CDS38 139 -SQELIVIAPTNDAIS-KLSMKPWQFPNNIDAMEQSNAEP--KQIDDAIK 184 ldkeEnIPSlrkiklfFDGeklknnndtpedLdLEgdDiIevwf<-* + + +k + + + d dLE+d e+w KLLA-CDS38 185 ENVA------HFVK----SHIVAHS----DDFDLESD---EIWL 211 KLLA-CDS6675.1: domain 1 of 1, from 3 to 86: score -72.1, E = 3.3 *->eneeftvkvrIlDceseierlklRmsdilekFeevfkelAsklgvdp e e v v+ + KLLA-CDS66 3 EEQEQKVDVK-----------------P------------------- 13 scIlLllgdnevgpsdTPhslglkpadiidgvvlaskeekepaakissev ++ ++ lk+ d s+e KLLA-CDS66 14 --------ETHIN---------LKVSD-------GSSE------------ 27 etieeksdkisiKVQgkkrkkpLevsvkkdttlkvlmiKvaEalgldkeE + +kk+t+lk lm a g + KLLA-CDS66 28 ----------------------IFFKIKKTTPLKRLMEAFAKRQGKEI-- 53 nIPSlrkiklfFDGeklknnndtpedLdLEgdDiIevwf<-* +++++ DG ++ + +tpedLd+E++DiIe KLLA-CDS66 54 -----ESLRFLYDGVRVLPD-QTPEDLDMEDNDIIEAHR 86 KLLA-CDS0295.1: domain 1 of 1, from 490 to 633: score -73.1, E = 3.9 *->eneeftvkvrIlDceseierlklRmsdilekFeevfkelAsklgvdp + ee+++ v + + ++ + ++ k +++f+e ++k v+ KLLA-CDS02 490 QGEETPLEVL---NNLGCFYFVTGEYE---KAQNLFQEASAKVIVHD 530 s.cIlLllg.dnevgpsdTPhslglkpadiidgvvlaskeekepaakiss s+ ++L++++ + + h+ + k++di + ++ KLLA-CDS02 531 SkKVTLDYNtARALE-----HTDKAKSHDIYT--------AI-------- 559 evetieeksdkisiKVQgkkrkkpLevsvkkdttlkvlmiKvaEalgldk +++ ++ is + r +L ++++lk+ + v + +++ KLLA-CDS02 560 ----LTDHPKYISARI----RDIHLKFINHPESNLKDEIKSVLTE-NESN 600 eEnIPSlrkiklfFDGeklknnndtpedLdL..EgdDiIevwf<-* +++f +lk +p++ +++ + + + v++ KLLA-CDS02 601 -------GEVRAFY-AWYLKKL-GKPAEHEMseHSKETL-VKY 633 KLLA-CDS0424.1: domain 1 of 1, from 392 to 538: score -73.7, E = 4.4 *->eneeftvkvrIlDceseierlklRmsdilekFeevfkelAsk.lgvd + + +t k+ + +e+ +l +++ + + l k++ vd KLLA-CDS04 392 DIRRLTKKLQ---KNGNLED-VLKIYQFAQMVPVISDLLKQKtEEVD 434 pscIlLllgdnevgpsdTPhslglkpadiidgvvlaskeekepaakisse ++ + l + ++ P + p + +v+++ + KLLA-CDS04 435 SNDLMILVKEVLLD----PMLENANPLEKLKELVETTVDLE--------- 471 vetieeksdkisiKVQgkkrkkpLevsvkk.dttlkvlmiKvaEalgldk + e +++ iKV + + ++ +++ + + ++ a+ lg d+ KLLA-CDS04 472 ---AYEETNEFMIKVEFNEQLSIIRTHLDElKDAIRTIHLDTADDLGFDP 518 eEnIPSlrkiklfFDGeklknnndtpedLdLEgdDiIevwf<-* e +k+kl +++ l + + + KLLA-CDS04 519 E------KKLKL--ENHHLHGW-------------CMRLTR 538 KLLA-CDS2276.1: domain 1 of 1, from 161 to 311: score -74.4, E = 5 *->eneeftv.kvrIlDceseierlklRmsdilekFeevfkelAsklgvd +++++ k + +D + i + +++ + + A ++d KLLA-CDS22 161 NDRTLRLwKTK-NDDLKSIDEEEIEDGK---TLAILEGHKAPVVSID 203 ps..cIlLllgdnevgpsdTPhslglkpadiidgvvlaskeekepaakis +s+++Il dn+v+ T ++k +++id+ + + KLLA-CDS22 204 VSkdRILSASCDNTVSLWST----NYKEMTVIDPMEDLGGN--------- 240 sevetieeksdkisiKVQgkkrkkpLevsvkkdttlk.vlmiKvaEalgl v t+ k k+++K r+ pL + + +++ v+++K + g KLLA-CDS22 241 --VSTAAKKRRKLTLKDGSIRRRAPLALFESHSAPVEaVIFDKSDDTVGY 288 dkeEnIPSlrkiklfFDGeklknnndtpedLdLEgdDiIevwf<-* + + ++ +k dL + + + + KLLA-CDS22 289 SVS-------------QDHTIKTW-------DLITAKCVDTKT 311 KLLA-CDS0988.1: domain 1 of 1, from 451 to 578: score -77.3, E = 8.5 *->eneeftvkvrIlDceseierlklRmsdilekFeevfkelAsklgvdp +e +v + +e ++ l+ + s i + + +kl +dp KLLA-CDS09 451 LPEDVPVQIA--KWEVNGVQLNEGESSI--PVK-------LKLRCDP 486 scIlLllgdnevgpsdTPhslglkpadiidgvvlaskeekepaakissev s + + ++ ++ + + + +a+ + ++ KLLA-CDS09 487 SGLHTVEDAYTIH--------DIEVEELVPPPADAPEGTE-----PEYKK 523 etieeksdkisiKVQgkkrkkpLevsvkkdttlkvlmiKvaEalgldkeE t + k d+++i + + + tl +l K + +l KLLA-CDS09 524 VTKTVKKDSLTI---------VAHTFALDEKTLNELIEK-ENELSAQD-- 561 nIPSlrkiklfFDGeklknnndtpedLdLEgdDiIevwf<-* kl+F+ e kn +e ++ KLLA-CDS09 562 --------KLVFETEDRKNT--------------LEEYI 578 Histogram of all scores: score obs exp (one = represents 4 sequences) ----- --- --- <-188 6 -|== -188 2 0|= -187 2 0|= -186 2 0|= -185 1 0|= -184 3 0|= -183 4 0|= -182 5 0|== -181 4 0|= -180 2 0|= -179 3 0|= -178 7 0|== -177 11 0|=== -176 7 0|== -175 16 0|==== -174 11 0|=== -173 19 0|===== -172 21 0|====== -171 22 0|====== -170 30 0|======== -169 26 0|======= -168 35 0|========= -167 42 0|=========== -166 48 0|============ -165 55 0|============== -164 66 0|================= -163 59 0|=============== -162 73 0|=================== -161 72 0|================== -160 82 0|===================== -159 60 0|=============== -158 63 0|================ -157 64 0|================ -156 74 0|=================== -155 65 0|================= -154 83 0|===================== -153 77 0|==================== -152 81 0|===================== -151 68 0|================= -150 80 0|==================== -149 79 0|==================== -148 80 0|==================== -147 85 0|====================== -146 69 0|================== -145 80 0|==================== -144 75 0|=================== -143 60 0|=============== -142 68 0|================= -141 79 0|==================== -140 57 0|=============== -139 60 0|=============== -138 56 0|============== -137 65 0|================= -136 58 0|=============== -135 63 0|================ -134 55 0|============== -133 81 0|===================== -132 69 0|================== -131 78 0|==================== -130 87 0|====================== -129 76 0|=================== -128 78 0|==================== -127 104 3|*========================= -126 98 10|==*====================== -125 87 27|======*=============== -124 95 57|==============*========= -123 110 104|=========================*== -122 121 167|=============================== * -121 117 240|============================== * -120 147 316|===================================== * -119 146 385|===================================== * -118 144 441|==================================== * -117 156 480|======================================= * -116 144 499|==================================== * -115 189 501|================================================ * -114 194 488|================================================= * -113 174 463|============================================ * -112 202 430|=================================================== * -111 175 393|============================================ * -110 165 353|========================================== * -109 194 314|================================================= * -108 173 276|============================================ * -107 169 240|=========================================== * -106 156 208|======================================= * -105 148 179|===================================== * -104 145 153|===================================== * -103 125 130|================================* -102 112 111|===========================* -101 119 94|=======================*====== -100 110 79|===================*======== -99 87 66|================*===== -98 76 56|=============*===== -97 74 47|===========*======= -96 52 39|=========*=== -95 38 33|========*= -94 32 27|======*= -93 30 23|=====*== -92 21 19|====*= -91 21 16|===*== -90 20 13|===*= -89 18 11|==*== -88 13 9|==*= -87 12 8|=*= -86 6 6|=* -85 6 5|=* -84 7 4|*= -83 5 3|*= -82 5 3|*= -81 6 2|*= -80 4 2|* -79 0 1|* -78 1 1|* -77 0 1|* -76 0 1|* -75 1 0|= -74 2 0|= -73 1 0|= -72 0 0| > -71 2 -|= % Statistical details of theoretical EVD fit: mu = -114.9050 lambda = 0.1809 chi-sq statistic = 2932.3838 P(chi-square) = 0 Total sequences searched: 7568 Whole sequence top hits: tophits_s report: Total hits: 220 Satisfying E cutoff: 7 Total memory: 48K Domain top hits: tophits_s report: Total hits: 220 Satisfying E cutoff: 220 Total memory: 194K