BLASTP 2.2.9 [May-01-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1089738094-2770-26397211563.BLASTQ4

Query= Sp_NP_595995
         (406 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples 
           1,922,832 sequences; 641,309,329 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19112787|ref|NP_595995.1|  hypothetical protein [Schizosa...   696   0.0  
gi|49096946|ref|XP_409933.1|  hypothetical protein AN5796.2 ...    40   0.065
gi|9664277|gb|AAF97049.1|  sentrin [Cervus nippon]                 33   8.6  
gi|34866007|ref|XP_346731.1|  hypothetical protein XP_346730...    33   9.2  
gi|49900045|gb|AAH77048.1|  Unknown (protein for MGC:89967) ...    33   9.4  

Alignments


>gi|19112787|ref|NP_595995.1| hypothetical protein [Schizosaccharomyces pombe]
 gi|7491455|pir||T39786 hypothetical protein SPBC1921.02 - fission yeast
           (Schizosaccharomyces pombe)
 gi|6090556|emb|CAB58968.1| SPBC1921.02 [Schizosaccharomyces pombe]
 gi|22255351|dbj|BAC07534.1| dna repair protein Rad60p [Schizosaccharomyces pombe]
          Length = 406

 Score =  696 bits (1797), Expect = 0.0
 Identities = 385/406 (94%), Positives = 385/406 (94%)

Query: 1   MDNLDEDDLAFFSKPIKKPPLNYAKQLIAXXXXXXXXXXLDTNKQALEHINAQKNITHNE 60
           MDNLDEDDLAFFSKPIKKPPLNYAKQLIA          LDTNKQALEHINAQKNITHNE
Sbjct: 1   MDNLDEDDLAFFSKPIKKPPLNYAKQLIASSSDSEEESELDTNKQALEHINAQKNITHNE 60

Query: 61  NKSAEPLSRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAA 120
           NKSAEPLSRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAA
Sbjct: 61  NKSAEPLSRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAA 120

Query: 121 NLRNNSINSEAAXXXXXXXXXXXFARRLEEIDRQVQEFEKSSSDMDVQIHTHKREIEEDD 180
           NLRNNSINSEAA           FARRLEEIDRQVQEFEKSSSDMDVQIHTHKREIEEDD
Sbjct: 121 NLRNNSINSEAALSTTSSLLDDDFARRLEEIDRQVQEFEKSSSDMDVQIHTHKREIEEDD 180

Query: 181 DNTSADVPLLKHSKSDHSTLYHSKSEFSTNEPVISVVLQLAVIGQRIPNSNISLPRDWEA 240
           DNTSADVPLLKHSKSDHSTLYHSKSEFSTNEPVISVVLQLAVIGQRIPNSNISLPRDWEA
Sbjct: 181 DNTSADVPLLKHSKSDHSTLYHSKSEFSTNEPVISVVLQLAVIGQRIPNSNISLPRDWEA 240

Query: 241 PLFFKVKSNQQFRRVRIAYSERKKVDNVVLVFQNQRLWDYGTPKGAGMLKVDTRLVVHAY 300
           PLFFKVKSNQQFRRVRIAYSERKKVDNVVLVFQNQRLWDYGTPKGAGMLKVDTRLVVHAY
Sbjct: 241 PLFFKVKSNQQFRRVRIAYSERKKVDNVVLVFQNQRLWDYGTPKGAGMLKVDTRLVVHAY 300

Query: 301 CHSDFISLKRIKELEVEKLSSVTEDSTAQTCKLITLLLRSSKSEDLRLSIPVDFTVKDLI 360
           CHSDFISLKRIKELEVEKLSSVTEDSTAQTCKLITLLLRSSKSEDLRLSIPVDFTVKDLI
Sbjct: 301 CHSDFISLKRIKELEVEKLSSVTEDSTAQTCKLITLLLRSSKSEDLRLSIPVDFTVKDLI 360

Query: 361 KRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 406
           KRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD
Sbjct: 361 KRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 406



>gi|49096946|ref|XP_409933.1| hypothetical protein AN5796.2 [Aspergillus nidulans FGSC A4]
 gi|40743699|gb|EAA62889.1| hypothetical protein AN5796.2 [Aspergillus nidulans FGSC A4]
          Length = 404

 Score = 40.4 bits (93), Expect = 0.065
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 25/189 (13%)

Query: 241 PLFFKVKSNQQFRRVRIAYSERKKVD-----NVVLVFQNQRLWDYGTPKGAGMLKVDT-- 293
           PL  + K +Q  + VR+A+  R+ +       V L ++ +RL+D  T K   +       
Sbjct: 213 PLVIQRKMSQSLKEVRLAWFARQDLPKDLQPTVFLTWKGRRLFDVTTCKSLNISAYTNET 272

Query: 294 -------------RLVVHAYCHSDFISLKRIKE----LEVEKLSSVTEDSTAQTCKLITL 336
                        R+ + A     + +  R       ++ E   S   + T Q  K   +
Sbjct: 273 SPFDEFFSDADACRVYMEAVTEEIYAARHRFSPNVVGVDPESTGSPHSEGTEQHAK-NEI 331

Query: 337 LLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELE 396
           +L+    +D ++ IP+  T+  +I  +     IS    + L F+G+ LDP   ++  E+ 
Sbjct: 332 ILKCPGHDDFKIQIPLTTTISQVIGAFREARSISPGLVVYLAFDGDRLDPQSSLEDNEIT 391

Query: 397 DEDQVSVVL 405
           D D V V++
Sbjct: 392 DGDLVDVLI 400



>gi|9664277|gb|AAF97049.1| sentrin [Cervus nippon]
          Length = 101

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 242 LFFKVKSNQQFRRVRIAYSERKKV--DNVVLVFQNQRLWDYGTPKGAGMLKVDTRLVVH 298
           + FKVK     ++++ +Y +R+ V  +++  +F+ QR+ D  TPK  GM + D   V H
Sbjct: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYH 92



>gi|34866007|ref|XP_346731.1| hypothetical protein XP_346730 [Rattus norvegicus]
          Length = 95

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 359 LIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403
           L+K YC    +S  + IR EF+G+ ++  D     E+EDED + V
Sbjct: 43  LMKAYCERQGLSMRQ-IRFEFDGQPINETDTPAQLEMEDEDTIDV 86



>gi|49900045|gb|AAH77048.1| Unknown (protein for MGC:89967) [Xenopus tropicalis]
          Length = 102

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 242 LFFKVKSNQQFRRVRIAYSERKKV--DNVVLVFQNQRLWDYGTPKGAGMLKVD 292
           + FKVK     ++++ +Y +R+ V  +++  +F+ QR+ D+ TPK  GM + D
Sbjct: 35  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEED 87






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
    Posted date:  Jul 13, 2004  2:03 AM
  Number of letters in database: 641,309,329
  Number of sequences in database:  1,922,832
  
Lambda     K      H
   0.314    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,460,807
Number of Sequences: 1922832
Number of extensions: 3575764
Number of successful extensions: 8342
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8334
Number of HSP's gapped (non-prelim): 14
length of query: 406
length of database: 641,309,329
effective HSP length: 128
effective length of query: 278
effective length of database: 395,186,833
effective search space: 109861939574
effective search space used: 109861939574
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)