BLASTP 2.2.9 [May-01-2004]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 1089736428-22498-127648194119.BLASTQ4

Query= Cb_CAE71155
         (322 letters)


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples 
           1,922,832 sequences; 641,309,329 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39591579|emb|CAE71155.1|  Hypothetical protein CBG18011 [...   565   e-160
gi|17554898|ref|NP_497960.1|  putative nuclear protein (3F78...   157   4e-37
gi|31200225|ref|XP_309060.1|  ENSANGP00000019625 [Anopheles ...    39   0.21 
gi|136304|sp|P26924|TRPD_AZOBR  Anthranilate phosphoribosylt...    34   5.2  
gi|47218566|emb|CAG10265.1|  unnamed protein product [Tetrao...    34   5.5  
gi|39597036|emb|CAE59263.1|  Hypothetical protein CBG02591 [...    33   7.1  
gi|47211840|emb|CAF90473.1|  unnamed protein product [Tetrao...    33   7.7  
gi|27468285|ref|NP_764922.1|  DNA polymerase I [Staphylococc...    33   9.2  

Alignments


>gi|39591579|emb|CAE71155.1| Hypothetical protein CBG18011 [Caenorhabditis briggsae]
          Length = 322

 Score =  565 bits (1456), Expect = e-160
 Identities = 322/322 (100%), Positives = 322/322 (100%)

Query: 1   MSDSDDNTYDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTEPNKKMRSYEPNGDSDD 60
           MSDSDDNTYDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTEPNKKMRSYEPNGDSDD
Sbjct: 1   MSDSDDNTYDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTEPNKKMRSYEPNGDSDD 60

Query: 61  DSIFEEVRNHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGTTNDYLTKTMEKVGAFLEP 120
           DSIFEEVRNHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGTTNDYLTKTMEKVGAFLEP
Sbjct: 61  DSIFEEVRNHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGTTNDYLTKTMEKVGAFLEP 120

Query: 121 EKQIETEDICIDKADTSSTQKESTTVRVVINDCESRISKRNCRDMDIHSTFAEVRKELSL 180
           EKQIETEDICIDKADTSSTQKESTTVRVVINDCESRISKRNCRDMDIHSTFAEVRKELSL
Sbjct: 121 EKQIETEDICIDKADTSSTQKESTTVRVVINDCESRISKRNCRDMDIHSTFAEVRKELSL 180

Query: 181 KWMCHFNEVHLMYNGNRIGDVTPHELGIVPFQVPLPEFDAIREEKERPSNVISPKVITIE 240
           KWMCHFNEVHLMYNGNRIGDVTPHELGIVPFQVPLPEFDAIREEKERPSNVISPKVITIE
Sbjct: 181 KWMCHFNEVHLMYNGNRIGDVTPHELGIVPFQVPLPEFDAIREEKERPSNVISPKVITIE 240

Query: 241 TVSDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKVIESLAGDASIPSLSKMKAMFDDEY 300
           TVSDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKVIESLAGDASIPSLSKMKAMFDDEY
Sbjct: 241 TVSDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKVIESLAGDASIPSLSKMKAMFDDEY 300

Query: 301 CENSQTCKDLGLEDADCIDIYY 322
           CENSQTCKDLGLEDADCIDIYY
Sbjct: 301 CENSQTCKDLGLEDADCIDIYY 322



>gi|17554898|ref|NP_497960.1| putative nuclear protein (3F783) [Caenorhabditis elegans]
 gi|7507059|pir||T24432 hypothetical protein T04A8.8 - Caenorhabditis elegans
 gi|3879349|emb|CAA84734.1| Hypothetical protein T04A8.8 [Caenorhabditis elegans]
          Length = 328

 Score =  157 bits (396), Expect = 4e-37
 Identities = 121/335 (36%), Positives = 188/335 (56%), Gaps = 20/335 (5%)

Query: 1   MSDSDDNTYDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTEPNKKMRSYE----PNG 56
           MSDSDDN Y DYL +RRAA+QKKR+PV V ESD  DD          + ++ E    P+ 
Sbjct: 1   MSDSDDNAYSDYLGNRRAALQKKRQPVRVCESDDSDDDFDTSGPSPMRKKTRETQLFPDD 60

Query: 57  DSDDDSIFEEVRNHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGTTNDYLTKTMEKVGA 116
             DD+ +  E   + + +  ++D++EE YRR +   + +V+H     N+ ++  ++    
Sbjct: 61  SDDDECVEVEKETYSQKVRHEIDDVEEAYRRSIYK-RETVIHAPVEKNNVISGLLKICEG 119

Query: 117 FLEPEK---QIETEDICIDK-ADTSSTQKESTTVRVVINDCESRISKRNCR-DMDIHSTF 171
           + E  K   Q E ED+  D  AD SS   E+  V VVI DCES  +    R D+ + STF
Sbjct: 120 WDEAAKSGAQPEVEDVKDDSDADESSIAAENFPVTVVILDCESHGNDMKSRHDIFLESTF 179

Query: 172 AEVRKELSLKWMCHFNEVHLMYNGNRIGD-VTPHELGIVPFQVPLPEFDAIREEKERPSN 230
           +E+R+  + KW C  + V   +NG  I    TP  LG  P  +P P  +A +E  E    
Sbjct: 180 SEIRRIYATKWGCPVSCVVFSHNGKTIDTYTTPQSLGWRPMTLPHPLIEASKEAGE---- 235

Query: 231 VISPKVITIETVSDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKVIESLAGDA--SIPS 288
               +V TIE   D+ +IKV + +R+KP+ +   ++TT+++I++KVI++   D   +IPS
Sbjct: 236 --PAEVFTIENSPDSFTIKVLLASRRKPVQVEAAKDTTIQEILQKVIDAFVEDKEENIPS 293

Query: 289 LSKMKAMFDDEYCENSQ-TCKDLGLEDADCIDIYY 322
           +  MK +FD+E  ++   TC+ L LED DCI++Y+
Sbjct: 294 IESMKVVFDNERIKDVNITCEQLDLEDDDCIEVYF 328



>gi|31200225|ref|XP_309060.1| ENSANGP00000019625 [Anopheles gambiae]
 gi|21292650|gb|EAA04795.1| ENSANGP00000019625 [Anopheles gambiae str. PEST]
          Length = 199

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 243 SDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKVIESLAGDASIPSLSKMKAMFDDEYCE 302
           S+ I++KVQM+ RK+P+ L + +  T+  ++ K  E L  +        ++  FD E   
Sbjct: 123 SNMITLKVQMEKRKQPLRLQIDKNQTMSVLVIKCAEELKCEP-----KDIRLYFDGELVG 177

Query: 303 NSQTCKDLGLEDADCIDIYY 322
           N+   +DL LE  + +DI +
Sbjct: 178 NNDKPEDLDLEGDEILDIRF 197



>gi|136304|sp|P26924|TRPD_AZOBR Anthranilate phosphoribosyltransferase
 gi|94616|pir||S17704 anthranilate phosphoribosyltransferase (EC 2.4.2.18) - Azospirillum
           brasilense
 gi|48843|emb|CAA40985.1| phosphoribosyl anthranilate transferase [Azospirillum brasilense]
          Length = 355

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 33/104 (31%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 97  LHVQGTTNDYLTKTMEKVGAFLEP-EKQIETEDICIDKADTSSTQKESTTVRVVINDCES 155
           L V+G T D +T     + A   P E    T D C    D S T   ST   VVI  C  
Sbjct: 56  LRVRGETVDEITGAARVMRAKAIPVEAPDGTIDTCGTGGDGSGTYNISTAAAVVIAACGV 115

Query: 156 RISKRNCRDMDIHSTFAEVRKELSLKWMCHFNEVHLMYNGNRIG 199
            ++K   R M   S  A+V   L +   C    V       RIG
Sbjct: 116 PVAKHGNRAMSSKSGAADVLGALGVNLDCDLGLVRKALWDARIG 159



>gi|47218566|emb|CAG10265.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 94

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 273 MKKVIESLAGDASIPSLSKMKAMFDDEYCENSQTCKDLGLEDADCIDIY 321
           +KK+ ES +    +P+ S ++ +F+ +   ++QT K+LG+ED D I++Y
Sbjct: 40  LKKLKESYSQRQGVPA-STLRFLFEGQRIADNQTPKELGMEDEDVIEVY 87



>gi|39597036|emb|CAE59263.1| Hypothetical protein CBG02591 [Caenorhabditis briggsae]
          Length = 743

 Score = 33.5 bits (75), Expect = 7.1
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 9   YDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTEPNKKMRSYEPNGDSDDDSIFEEVR 68
           YD  +ES R   + K  P   +  D D++F V++    K     E N D    S+ + +R
Sbjct: 206 YDPSMESPRR--EAKPPPRGEFSEDDDEEFVVQRVYLPK---PDERNADQRPLSVMDRMR 260

Query: 69  NHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGTTNDYLTKTMEKVGAFLEPEKQIETED 128
             ++          ++ RR++  +K   +  Q    D    T+  +   L P++ IE +D
Sbjct: 261 KANQRRATVFSEFADQLRRDIAANKRIRVRKQPPEEDEQQGTLFYISKELSPQEIIELQD 320

Query: 129 ICI 131
             I
Sbjct: 321 AVI 323



>gi|47211840|emb|CAF90473.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 97

 Score = 33.1 bits (74), Expect = 7.7
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 273 MKKVIESLAGDASIPSLSKMKAMFDDEYCENSQTCKDLGLEDADCIDIY 321
           +KK+ ES +    +P+ S ++ +F+ +   ++QT K+LG+ED D I++Y
Sbjct: 44  LKKLKESYSQRQGVPA-STLRFLFEGQRIADNQTPKELGMEDEDVIEVY 91



>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 11/156 (7%)

Query: 7   NTYDDYLESRRAAIQKKRKPVAVYESDSD---DDFPVKKTEPNKKMRSYEPNGDSDDDSI 63
           N+ DD L S+  A      P+ V   D+     D   KK E  KK+   +   D D  S 
Sbjct: 259 NSKDDALMSKDLATINVHSPIEVSLEDTKLTLQDDTTKKIELFKKLEFKQLLADIDTSST 318

Query: 64  FEEVRNHDEVMTDKLDNLEEEYRR-ELTNSKHSVLHVQGTTNDYLTKTMEKVGAFLEPEK 122
            EEV        DK   +E++++  +L +   +V+H +    +YL  T+ K G +   + 
Sbjct: 319 NEEV-------IDKTFEIEQDFQNVDLNDLNEAVIHFELEGTNYLKDTILKFGFYTNHQH 371

Query: 123 QIETEDICIDKADTSSTQKESTTVRVVINDCESRIS 158
            +   +   D        ++  T ++V +  ++ +S
Sbjct: 372 VVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTYVS 407






  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
    Posted date:  Jul 13, 2004  2:03 AM
  Number of letters in database: 641,309,329
  Number of sequences in database:  1,922,832
  
Lambda     K      H
   0.312    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,066,304
Number of Sequences: 1922832
Number of extensions: 3447409
Number of successful extensions: 11139
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 11078
Number of HSP's gapped (non-prelim): 112
length of query: 322
length of database: 641,309,329
effective HSP length: 125
effective length of query: 197
effective length of database: 400,955,329
effective search space: 78988199813
effective search space used: 78988199813
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 74 (33.1 bits)