BLASTP 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= At_At1g68185.1_NP_564924 (215 letters) Database: Yl.fa 6257 sequences; 3,069,425 total letters Searching.............done Score E Sequences producing significant alignments: (bits) Value YALI-CDS3248.1 Yarrowia lipolytica YALI-CDS3248.1 399aa protein ... 49 6e-07 YALI-CDS3275.1 Yarrowia lipolytica YALI-CDS3275.1 397aa protein ... 31 0.13 YALI-CDS0226.1 Yarrowia lipolytica YALI-CDS0226.1 1226aa protein... 28 1.1 YALI-CDS3855.1 Yarrowia lipolytica YALI-CDS3855.1 344aa protein ... 27 1.9 YALI-CDS0987.1 Yarrowia lipolytica YALI-CDS0987.1 747aa protein ... 27 1.9 YALI-CDS0246.1 Yarrowia lipolytica YALI-CDS0246.1 1201aa protein... 27 1.9 YALI-CDS4344.1 Yarrowia lipolytica YALI-CDS4344.1 303aa protein ... 27 2.5 YALI-CDS0098.1 Yarrowia lipolytica YALI-CDS0098.1 1485aa protein... 27 2.5 YALI-CDS2441.1 Yarrowia lipolytica YALI-CDS2441.1 488aa protein ... 26 4.3 YALI-CDS0192.1 Yarrowia lipolytica YALI-CDS0192.1 1279aa protein... 26 5.6 YALI-CDS3523.1 Yarrowia lipolytica YALI-CDS3523.1 374aa protein ... 25 9.5 YALI-CDS3054.1 Yarrowia lipolytica YALI-CDS3054.1 419aa protein ... 25 9.5 YALI-CDS2588.1 Yarrowia lipolytica YALI-CDS2588.1 470aa protein ... 25 9.5 YALI-CDS0235.1 Yarrowia lipolytica YALI-CDS0235.1 1214aa protein... 25 9.5 >YALI-CDS3248.1 Yarrowia lipolytica YALI-CDS3248.1 399aa protein Weakly similar to CAGL-CDS2988.1 Candida glabrata IPF, hypothetical start Length = 399 Score = 48.9 bits (115), Expect = 6e-07 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 127 ETAAQLPSEPTNDRAKIVITIQDKDGQK-TLRVFADEKFERVIKLYTDKAKLDPQNLVFI 185 E AA P EP D I +T+ KD + T+RV +F ++ + Y + + ++ Sbjct: 314 EPAAAEPEEP--DEEDIELTMAGKDKKPVTVRVGLSRQFIKLAEHYAKEMNVPATSVQLY 371 Query: 186 FDGDKIDPSTTPSELGMEDHDMIEV 210 FDGDKID ++T + +ED DM+EV Sbjct: 372 FDGDKIDLNSTIEQADVEDEDMLEV 396 >YALI-CDS3275.1 Yarrowia lipolytica YALI-CDS3275.1 397aa protein similar to AAO74702 (AAO74702) GM04721p Drosophila melanogaster, start by similarity Length = 397 Score = 31.2 bits (69), Expect = 0.13 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 156 LRVFADEKFERVIKLYTDKAKLDPQNLVFIFDGDKI---DPSTTPSELGMEDHDMIEVHT 212 L V AD +E ++ +A + ++++ +G+ I DP T LG+ D+ M+ + T Sbjct: 15 LEVAADMAYEDLLAFVEMEASVPSKDIILSLNGNPIVDTDPKATIGSLGVTDNSMLLLTT 74 Query: 213 KK 214 K+ Sbjct: 75 KR 76 >YALI-CDS0226.1 Yarrowia lipolytica YALI-CDS0226.1 1226aa protein Similar to tr|Q9P5M4 Neurospora crassa Related to SCP160 protein,Start by similarity# Length = 1226 Score = 28.1 bits (61), Expect = 1.1 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 9/84 (10%) Query: 32 ASVTPIPKKAKTSQTVEKL-------DDDVKVIEVT--GDDDWLLPPPKVIFDKSKDSVE 82 +++ PI +K+ +EKL DDD + +EV GD + + + IF + V+ Sbjct: 210 SNLKPILEKSGAHIQIEKLESNGNNADDDEETVEVIVEGDSEGIAIAKQEIFAIVSERVK 269 Query: 83 DSTIKALRSKKMELMSFTKTVGDV 106 + TI+ + KT GD+ Sbjct: 270 NMTIRVRNVNYVLFPFLDKTAGDL 293 >YALI-CDS3855.1 Yarrowia lipolytica YALI-CDS3855.1 344aa protein Similar to Saccharomyces cerevisiae YOR007c SGT2 similarity to protein phosphatases, Start by similarity Length = 344 Score = 27.3 bits (59), Expect = 1.9 Identities = 19/84 (22%), Positives = 32/84 (38%) Query: 101 KTVGDVMQXXXXXXXXXXXXXXNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFA 160 +T+ D+ + +P+ E AA + T + T DK + + + Sbjct: 57 QTLLDIFKNRSNSASTAGADKSSPALEAAAAKMAAATAVLTEEQKTQADKLKLEGNKALS 116 Query: 161 DEKFERVIKLYTDKAKLDPQNLVF 184 FE I LYT +D N V+ Sbjct: 117 QRNFEESIDLYTQAIDIDANNAVY 140 >YALI-CDS0987.1 Yarrowia lipolytica YALI-CDS0987.1 747aa protein Highly similar to sp|P19414 Saccharomyces cerevisiae Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 747 Score = 27.3 bits (59), Expect = 1.9 Identities = 17/43 (39%), Positives = 22/43 (51%) Query: 162 EKFERVIKLYTDKAKLDPQNLVFIFDGDKIDPSTTPSELGMED 204 + F R+ + K L P N V D DKI PS S LG++D Sbjct: 656 KSFARIHETNLKKQGLLPLNFVNGADYDKIQPSDKISILGLKD 698 >YALI-CDS0246.1 Yarrowia lipolytica YALI-CDS0246.1 1201aa protein No similarity, Hypothetical start Length = 1201 Score = 27.3 bits (59), Expect = 1.9 Identities = 12/40 (30%), Positives = 21/40 (52%) Query: 171 YTDKAKLDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEV 210 Y D A + + + DGD+++P E+G+ D + EV Sbjct: 896 YEDGADDEADDAAEVEDGDEVEPVAPEEEIGINDAEFGEV 935 >YALI-CDS4344.1 Yarrowia lipolytica YALI-CDS4344.1 303aa protein No similarity, hypothetical start Length = 303 Score = 26.9 bits (58), Expect = 2.5 Identities = 19/82 (23%), Positives = 33/82 (40%) Query: 123 NPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERVIKLYTDKAKLDPQNL 182 +PSS T+ + P K+++T+QD + + F + E L P + Sbjct: 146 SPSSNTSTSSDASPNMALPKVILTVQDFERDYPVTHFLPTESEVTYCLVCQGIVNPPTQV 205 Query: 183 VFIFDGDKIDPSTTPSELGMED 204 + G K S P+ L + D Sbjct: 206 RTMPCGHKAHASCIPAPLAVPD 227 >YALI-CDS0098.1 Yarrowia lipolytica YALI-CDS0098.1 1485aa protein Similar to YNL088w sp|P06786 Saccharomyces cerevisiae YNL088w TOP2 DNA topoisomerase II (ATP-hydrolysing) singleton , 3'end of IPF, No start Length = 1485 Score = 26.9 bits (58), Expect = 2.5 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 140 RAKIVITIQDKDGQKTLRVFADEKFERVIKLYT-DKAKLDPQNLVFIFD 187 R K IT+ +K+ +KT ++ E+F+ + L T + DP+ + +D Sbjct: 981 RVKFNITLSEKEMEKTRQIGLRERFKLISSLSTSNMVAFDPEGRIKKYD 1029 >YALI-CDS2441.1 Yarrowia lipolytica YALI-CDS2441.1 488aa protein Similar to tr|Q9HGM9 Schizosaccharomyces pombe DNAJ domain protein, Hypothetical start Length = 488 Score = 26.2 bits (56), Expect = 4.3 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 132 LPSEPTNDRAKIV---ITIQDKDGQKTLRVFADEKFERVIKLYTDKAKLDPQN 181 L ++P N +A+ + I D+ ++ F ++ R +LYT+ LDP N Sbjct: 212 LRNDPDNSKARTLLKQIKEIDRKREEGNSAFKSGQYARAKELYTETLALDPTN 264 >YALI-CDS0192.1 Yarrowia lipolytica YALI-CDS0192.1 1279aa protein Weakly similar to sp|P08640 Saccharomyces cerevisiae YIR019c STA1 extracellular alpha-1,4-glucan glucosidase P2.341.f2.1, No start Length = 1279 Score = 25.8 bits (55), Expect = 5.6 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 33 SVTPIPKKAKTSQTVEKLDDDVKVIEVTGDDDWLLPPPKVIFDKSKDSVEDSTIKALRSK 92 +VTP+P + + + ++ E T + LP P S+ S +ST L S Sbjct: 308 AVTPLPTPSSETSFINSTTSELGASESTSETATPLPTP-----SSETSFINSTTSELGST 362 Query: 93 KMELMSFTKTVGDVMQXXXXXXXXXXXXXXNPSSETAAQLPSEPTNDRAKIVITIQD 149 + T + +SETA LP+ P+++ + I T + Sbjct: 363 GSTPETVTPLPTPSSETSFINSTTSELGASESTSETATPLPT-PSSETSFINSTTSE 418 >YALI-CDS3523.1 Yarrowia lipolytica YALI-CDS3523.1 374aa protein similar to sp|P41816 Saccharomyces cerevisiae NADPH dehydrogenase 3 (EC 1.6.99.1) (Old yellow enzyme 3) YPL171c OYE3 isoform 3, start by similarity Length = 374 Score = 25.0 bits (53), Expect = 9.5 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 149 DKDGQKTLRVFADEKFERVIKLYTDKAK 176 D+DG K +R + ++ ++LY D AK Sbjct: 137 DEDGAKHVRALTIPEIKQKVQLYVDAAK 164 >YALI-CDS3054.1 Yarrowia lipolytica YALI-CDS3054.1 419aa protein Weakly similar to tr|Q9P7D2 Schizosaccharomyces pombe Putative methyltransferase, hypothetical start Length = 419 Score = 25.0 bits (53), Expect = 9.5 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Query: 42 KTSQTVEKLDDDVKVIEVTGDDDWLLPPPKVIFDKSKDSVEDSTIKA 88 +T +TVE +++ + E G D +PPPK K+ S T+ A Sbjct: 33 ETEETVECTEEEEEQDETDGLGDLGMPPPK----KTTKSAASPTVPA 75 >YALI-CDS2588.1 Yarrowia lipolytica YALI-CDS2588.1 470aa protein Similar to YKL059c sp|P35728 Saccharomyces cerevisiae YKL059c similarity to C.elegans hypothetical protein, Start by similarity. Length = 470 Score = 25.0 bits (53), Expect = 9.5 Identities = 19/73 (26%), Positives = 28/73 (38%) Query: 69 PPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQXXXXXXXXXXXXXXNPSSET 128 P KV+FD + SV D + + S K++ + + V SS Sbjct: 14 PSKVVFDGTSISVFDLKREIITSNKLDKSADQFDLAIVNPDTKDEYRDDNELIARSSSVL 73 Query: 129 AAQLPSEPTNDRA 141 A +LPS P A Sbjct: 74 ARRLPSRPGKGEA 86 >YALI-CDS0235.1 Yarrowia lipolytica YALI-CDS0235.1 1214aa protein Similar to sp|P52918 Saccharomyces cerevisiae YDR335w MSN5 multicopy supressor of SNF1 mutation Length = 1214 Score = 25.0 bits (53), Expect = 9.5 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 76 KSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQXXXXXXXXXXXXXXNPSSETAAQLPSE 135 KSKD D +KA++S L F ++G +++ + +ET ++P Sbjct: 804 KSKDEFVDENVKAMQS----LRDFADSIGHIVR-YTREYSFFAVSSISALNETLYEIPDI 858 Query: 136 PTN 138 TN Sbjct: 859 ATN 861 Database: Yl.fa Posted date: Jul 7, 2004 6:53 PM Number of letters in database: 3,069,425 Number of sequences in database: 6257 Lambda K H 0.313 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,348,184 Number of Sequences: 6257 Number of extensions: 54688 Number of successful extensions: 105 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 17 length of query: 215 length of database: 3,069,425 effective HSP length: 87 effective length of query: 128 effective length of database: 2,525,066 effective search space: 323208448 effective search space used: 323208448 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 53 (25.0 bits)