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GPI Anchor Biosynthesis Report: orf19.6379.prot (PIG-S family, Candida albicans)




BLASTP 2.1.1 [Aug-8-2000]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (152 letters)

Database: nr
           1,543,518 sequences; 504,497,942 total letters

Searching..................................................

Distribution of 1 Blast Hits on the Query Sequence

Sequences with E-value BETTER than threshold (0.002)



Sequences with E-value WORSE than threshold 

 ref|NP_010722.1|  Glycosyl Phosphatidyl Inositol 17; Gpi17p [S...    36  0.46


Alignments


>ref|NP_010722.1| Glycosyl Phosphatidyl Inositol 17; Gpi17p [Saccharomyces
           cerevisiae]
 sp|Q04080|GP17_YEAST GPI transamidase component GPI17
 pir||S69714 hypothetical protein YDR434w - yeast (Saccharomyces cerevisiae)
 gb|AAB64866.1| Ydr434wp; CAI: 0.14 [Saccharomyces cerevisiae]
          Length = 534

 Score = 36.5 bits (83), Expect = 0.46
 Identities = 34/126 (26%), Positives = 59/126 (45%), Gaps = 12/126 (9%)

Query: 25  QNTRSSDIGPTKSIPVSINFEKDSEYFNFPDLVAATQIQI----DSELRYITNSSVNVQL 80
           QN +  DI     IPV +     S+ + FPD+  A Q+Q+    +S+ + +  S   +  
Sbjct: 46  QNNKFQDIHLV--IPVYVK----SDTYRFPDVHDAIQVQVNHLLNSQEQRVPWSLQVLPY 99

Query: 81  VDNLNNPKNHTKYSVDLVLSRDNSLGISS--DGLKGYVLYSYEAIHSNDLPYLIVQTILY 138
            + +   ++       + L  D  +G SS  D  +  V Y   A+ SNDLP+ + QT++ 
Sbjct: 100 NETIEQMESEGNQFHVVTLKLDEFIGYSSAYDTKETLVYYDDAAVLSNDLPFFVAQTLVE 159

Query: 139 HLLKFE 144
           H  + E
Sbjct: 160 HTFQLE 165





CPU time:    63.91 user secs.	    3.74 sys. secs	   67.65 total secs.

  Database: nr
    Posted date:  Nov 22, 2003  1:30 PM
  Number of letters in database: 504,497,942
  Number of sequences in database:  1,543,518
  
Lambda     K      H
   0.318    0.137    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145593381
Number of Sequences: 1543518
Number of extensions: 5601115
Number of successful extensions: 18591
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 18587
Number of HSP's gapped (non-prelim): 20
length of query: 152
length of database: 504,497,942
effective HSP length: 56
effective length of query: 96
effective length of database: 418,060,934
effective search space: 40133849664
effective search space used: 40133849664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)