Sequences with E-value BETTER than threshold (0.002) 324 7e-88
260 2e-68
251 6e-66
232 5e-60
216 4e-55
197 2e-49
191 8e-48
189 5e-47
186 3e-46
185 7e-46
179 4e-44
176 4e-43
174 1e-42
163 2e-39
161 1e-38
160 2e-38
159 4e-38
159 5e-38
159 6e-38
159 6e-38
158 6e-38
158 1e-37
151 2e-35
144 1e-33
142 7e-33
141 1e-32
140 2e-32
137 3e-31
137 3e-31
135 7e-31
135 1e-30
135 1e-30
133 4e-30
129 4e-29
128 9e-29
128 9e-29
128 1e-28
125 8e-28
122 5e-27
121 9e-27
120 2e-26
120 2e-26
120 3e-26
114 2e-24
111 1e-23
107 2e-22
107 3e-22
101 8e-21
98 1e-19
96 4e-19
Alignments
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
deacetylase [Schizosaccharomyces pombe]
Length = 248
Score = 324 bits (824), Expect = 7e-88
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MIWFWSTLLVTAIAVLSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHS 60
MIWFWSTLLVTAIAVLSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHS
Sbjct: 1 MIWFWSTLLVTAIAVLSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHS 60
Query: 61 TRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVA 120
TRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVA
Sbjct: 61 TRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVA 120
Query: 121 KHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKY 180
KHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKY
Sbjct: 121 KHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKY 180
Query: 181 ISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWIYLSKYMS 240
ISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWIYLSKYMS
Sbjct: 181 ISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWIYLSKYMS 240
Query: 241 NNVLKRAT 248
NNVLKRAT
Sbjct: 241 NNVLKRAT 248
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
Length = 252
Score = 260 bits (659), Expect = 2e-68
Identities = 84/252 (33%), Positives = 124/252 (48%), Gaps = 21/252 (8%)
Query: 8 LLVTAIAVLS-------TANESSSGQE----KLAVESILFVFAHPDDESMFFGPTIDYLG 56
LL A+AVL+ + E E A L V AHPDDE+MFF PTI L
Sbjct: 6 LLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPTILGLA 65
Query: 57 NQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDP 116
+V +LC S+GN G +R+KEL+ + + I + V ++ + D + +WD
Sbjct: 66 RLK-QQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDT 124
Query: 117 TDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKI---VKATPQVQVFVLES 173
VA I Q I ++TFD +G+SGH NHIA Y+ + K V L+S
Sbjct: 125 EHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQS 184
Query: 174 VNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWI 233
VN+ RKY+ LD TL+ Q ++ K + + + H+SQ++WFR+ +
Sbjct: 185 VNVLRKYVFLLDLPWTLLSPQG-----VLFVLTSKEVAQAK-KAMSCHRSQLLWFRHLYT 238
Query: 234 YLSKYMSNNVLK 245
S+YMS N L+
Sbjct: 239 VFSRYMSVNSLQ 250
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
Length = 390
Score = 251 bits (637), Expect = 6e-66
Identities = 83/253 (32%), Positives = 122/253 (47%), Gaps = 35/253 (13%)
Query: 22 SSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN--------- 72
S + +E +L + AHPDDE MFFGP I L + +V++LCLSNG
Sbjct: 130 SVRLPKTACMERVLLITAHPDDECMFFGPLIYSLTQRQGCQVYILCLSNGETTSSDIIPK 189
Query: 73 ------------ADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVA 120
+ VR +EL + SK I ++N+ +++ L D W P VA
Sbjct: 190 PPIDLEALNESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVA 249
Query: 121 KHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKAT-------PQVQVFVLES 173
I IE +I+ + TFD G+S HPNH A Y A + A + + L+S
Sbjct: 250 SLILHTIESLDIQAIFTFDRDGVSSHPNHCAVYYAAASLCLANLLPKGEEAYCKFYTLDS 309
Query: 174 VNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWI 233
+N+ RKY+S LD + T S T + K +R AM+ H+SQM WFR+ +I
Sbjct: 310 INVVRKYLSILDLLCTCFMS------THWCILNWKEAAIVRSAMME-HQSQMRWFRWLYI 362
Query: 234 YLSKYMSNNVLKR 246
Y S+YM N +++
Sbjct: 363 YFSRYMFINSMRQ 375
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
Length = 252
Score = 232 bits (587), Expect = 5e-60
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 21/251 (8%)
Query: 8 LLVTAIAVLS-------TANESSSGQEKLA----VESILFVFAHPDDESMFFGPTIDYLG 56
LL A+AVL+ ++E +E+ L V AHPDDE+MFF PT+ L
Sbjct: 6 LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65
Query: 57 NQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDP 116
V++LC S GN G R+KEL+ + I ++V ++ + D +WD
Sbjct: 66 RLRHW-VYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDT 124
Query: 117 TDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKI---VKATPQVQVFVLES 173
VA+ + Q IE I ++TFD G+SGH NHIA Y + K V L+S
Sbjct: 125 EHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQS 184
Query: 174 VNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWI 233
VN+ RKYIS LD +L+ +Q ++ + K + + + H+SQ++WFR +I
Sbjct: 185 VNVLRKYISLLDLPLSLLHTQ-----DVLFVLNSKEVAQAK-KAMSCHRSQLLWFRRLYI 238
Query: 234 YLSKYMSNNVL 244
S+YM N L
Sbjct: 239 IFSRYMRINSL 249
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
cerevisiae)
emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
Length = 304
Score = 216 bits (545), Expect = 4e-55
Identities = 82/266 (30%), Positives = 118/266 (43%), Gaps = 36/266 (13%)
Query: 15 VLSTANESSSG--QEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRV--HVLCLSN 70
++S N S K I V AHPDDE MFF P I L + V +++CLS
Sbjct: 36 IVSRNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSK 95
Query: 71 GNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIE-- 128
GNA+GLG R +EL +A+ ++ V V QDGM WD + +SQ I+
Sbjct: 96 GNAEGLGETRVRELNESAALLLHNERAVS-VQVMDFQDGMDEIWDIDSITSSLSQKIDIK 154
Query: 129 RYNI-KTLITFDNKGISGHPNHIACYEGAMKIV-----------KATPQVQVFVLESV-- 174
+N+ + ++TFD+ G+S H NH +CY K+V + P V L S
Sbjct: 155 NHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKN 214
Query: 175 NIFRKYISYL---------------DTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVR 219
NI KY S++ I L + A D + + M+
Sbjct: 215 NIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLN 274
Query: 220 GHKSQMVWFRYGWIYLSKYMSNNVLK 245
H+SQ+VWFRYGW S+++ N
Sbjct: 275 AHESQVVWFRYGWWIFSRFVFVNEFD 300
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75517 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
Length = 281
Score = 197 bits (497), Expect = 2e-49
Identities = 58/233 (24%), Positives = 91/233 (38%), Gaps = 37/233 (15%)
Query: 22 SSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNA-------- 73
SSS A ++L +FAHPDDE+ G T+ + Q RV + C + G A
Sbjct: 3 SSSTPAPRA--TLLVIFAHPDDEAFSVGGTLTHYARQ-GVRVVLACATRGEAGKITVPGM 59
Query: 74 --DGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQ-------AKWDPTDVAKHIS 124
D LG+ RE+EL A +I+ D + + +P D +
Sbjct: 60 TVDDLGAQREQELREACRALEIEPPVFLDYHDSGRYERTRHDDPTALMNVNPLDAEVKLR 119
Query: 125 QIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKY---- 180
+IE + ++TFD G GH +H+ + + +T L S R Y
Sbjct: 120 ALIEDVQPQVIVTFDPHGAYGHVDHLQMHRATVAAFFSTGH-----LPSGGPQRLYYTAM 174
Query: 181 -------ISYLDTIPTLVQSQAGRND-TIIIHADRKSTQRIRDAMVRGHKSQM 225
IS L +L G +D T+ + D + + A + H +QM
Sbjct: 175 THQAAAQISRLGHDQSLDPLVYGVSDSTLAVTMDVGAYAENKKAALAAHGTQM 227
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 267
Score = 191 bits (483), Expect = 8e-48
Identities = 40/215 (18%), Positives = 72/215 (32%), Gaps = 29/215 (13%)
Query: 29 LAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG---------NADGLGSV 79
VE +L + HPDD + G TI L + V C+++G L ++
Sbjct: 29 KDVEKVLCIEPHPDDCVIGMGGTIKKLT-ERGIEVIYACMTDGYMGTLDSSLTGHELATI 87
Query: 80 REKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFD 139
R +E ++ + K D +L + + D + +II + + D
Sbjct: 88 RRREEEESSKLLGVKKIYWLNYRDTELPYSREVRKD-------LVRIIRKEKPDGVFLPD 140
Query: 140 NKGIS-GHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRN 198
HP+H A+ V +P L + + I + +
Sbjct: 141 PWLPYEAHPDHRNTGFLALDAVAFSP------LPNFSNVDVEIGLGPHQVSFIALYYTNK 194
Query: 199 DTIIIHADRKSTQRIRDAMVRGHKSQM---VWFRY 230
+ D ++ +R HKSQ VW +
Sbjct: 195 PNYFV--DITDVMELKLKAIRTHKSQFPDDVWEVW 227
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
Length = 293
Score = 189 bits (476), Expect = 5e-47
Identities = 47/250 (18%), Positives = 81/250 (31%), Gaps = 54/250 (21%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN---------------ADGLG 77
++ V AHPDDES T+ ++ V V+ + G + +
Sbjct: 6 RLMAVHAHPDDESSKGAATMAKYVSE-GVDVLVVTCTGGERGSILNPKLQGDAYIEENIH 64
Query: 78 SVREKELVVAASKYQIDKTNVHVVSD--------PQLQDGMQAKWDPTDVAKHISQIIER 129
VR KE+ A + + + V P L +G A D A + + I
Sbjct: 65 EVRRKEMDEAREILGVGQEWLGFVDSGLPEGDPLPPLPEGCFALEDVDKAAGELVRKIRS 124
Query: 130 YNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQ---------------VQVFVLESV 174
+ + + T+D G HP+HI ++ M + ++V+ +
Sbjct: 125 FRPQVITTYDENGGYPHPDHIMTHKITMVAFEGAADTEKYPESEYGTAYQPLKVYYNQGF 184
Query: 175 NIFRKYI-----------SYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKS 223
N R S + + T+ H IRD + H +
Sbjct: 185 NRPRTEALHHALLDRGLESPYEDWLKRWSEFERKERTLTTHVPCADFFEIRDKALIAHAT 244
Query: 224 QMV----WFR 229
Q+ WFR
Sbjct: 245 QIDPEGGWFR 254
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 186 bits (470), Expect = 3e-46
Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 32/217 (14%)
Query: 29 LAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG---------NADGLGSV 79
+ +L + HPDD + G TI L + V +C+++G + L ++
Sbjct: 33 KDAKKVLCIEPHPDDCVIGMGGTIKKL-SDMGVEVIYVCMTDGYMGTTDESLSGHELAAI 91
Query: 80 REKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFD 139
R KE +A + K D +L + + D +++I+ + + D
Sbjct: 92 RRKEEEESARLLGVKKIYWLNYRDTELPYSREVRKD-------LTKILRKEQPDGVFAPD 144
Query: 140 NKGIS-GHPNHIACYEGAMK--IVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAG 196
HP+H A++ P L+ S++ T +
Sbjct: 145 PWLPYESHPDHRRTGFLAIESVAFSQLPNFSNTDLDIGLNPYNSGSFIALYYTHKPN--- 201
Query: 197 RNDTIIIHADRKSTQRIRDAMVRGHKSQM---VWFRY 230
D ++ +R H+SQ +W ++
Sbjct: 202 ------YIVDITDLMELKLKAIRVHRSQFPDDIWEKW 232
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
Length = 223
Score = 185 bits (466), Expect = 7e-46
Identities = 60/207 (28%), Positives = 98/207 (46%), Gaps = 29/207 (14%)
Query: 43 DESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVS 102
D+ FF PTI+Y + + +H+LC S GNADG+GS+R++EL A + ++
Sbjct: 34 DDGKFFSPTINYFTST-ACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIP------- 85
Query: 103 DPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKA 162
+D + + S N + +ITFDN G+ GH NH + + +
Sbjct: 86 -----------FDKEGICDNDSCHC---NEEHIITFDNYGVWGHCNHRDVHPPIDCKIDS 131
Query: 163 TPQVQVFVL---ESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVR 219
++ F+ S+NIFRKY +D +++ ++ + III+ K + +
Sbjct: 132 AKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIIN---KQPWKSF-KAMA 187
Query: 220 GHKSQMVWFRYGWIYLSKYMSNNVLKR 246
H SQ VWFR ++ S Y N L R
Sbjct: 188 QHLSQWVWFRKLFVLFSSYTYVNTLDR 214
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 179 bits (452), Expect = 4e-44
Identities = 47/208 (22%), Positives = 73/208 (34%), Gaps = 33/208 (15%)
Query: 32 ESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNA------------DGLGSV 79
+L +F HPDDE+ TI L + V CL+ G + L +
Sbjct: 5 RHVLVIFPHPDDEAFGVSGTIA-LFRKQGVPVTYACLTLGEMGRNLGNPPFATRESLPDI 63
Query: 80 REKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFD 139
R+KEL+ +A I+ + +D D T + +S ++ N +ITF
Sbjct: 64 RKKELIKSAEAMGIEDLRMLGY-----RDKTIEFEDETKLTDMVSDLMAELNPSLIITFY 118
Query: 140 NKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRND 199
G S HP+H A ++ V+ + L V + L L
Sbjct: 119 P-GYSVHPDHEATGRAVVRAVRRLEKSMRPKLYGVAFSNGHQEELGDPDILF-------- 169
Query: 200 TIIIHADRKSTQRIRDAMVRGHKSQMVW 227
D + A +R H SQ W
Sbjct: 170 ------DISPVAEQKKAAIRAHISQTAW 191
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 267
Score = 176 bits (443), Expect = 4e-43
Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 33/215 (15%)
Query: 31 VESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG---------NADGLGSVRE 81
+ ++ + HPDD ++ G TI L ++ V +C+++G + L +R
Sbjct: 31 AKKVICIEPHPDDCAIGMGGTIKKLSDE-GVEVIYICMTDGYMGTTDEKLSGHELALIRR 89
Query: 82 KELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNK 141
+E +A + K D +L + + D + +II + + D
Sbjct: 90 REEEESAKLLGVRKIYWLNYRDTELPYSREVRKD-------LVKIIRKEKPDGVFAPDPW 142
Query: 142 GIS-GHPNHIACYEGAMK--IVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRN 198
HP+H A++ P ++ +S++ T +
Sbjct: 143 LPYESHPDHRRTGFLAIESVAFSQLPNFSNIDIDIGLKPH-SVSFIALYYTHKPN----- 196
Query: 199 DTIIIHADRKSTQRIRDAMVRGHKSQM---VWFRY 230
D ++ +R H+SQ +W +
Sbjct: 197 ----YIVDITDLMELKLKAIRAHRSQFTDDIWETW 227
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 174 bits (439), Expect = 1e-42
Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 21/194 (10%)
Query: 34 ILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSV--REKELVVAASKY 91
IL AHPDD + G T+ + Q RV + L+ G+V R+KE A+
Sbjct: 6 ILAFGAHPDDVEIGMGATLYHY-RQKGHRVGICNLTKAELSSNGTVEQRQKEAADASRIL 64
Query: 92 QIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIA 151
ID+ + D L++ + + ++I +I F + HP+H
Sbjct: 65 GIDERIQLDLPDRGLRNPSEQQV------RNIVSVIRHCQP--TFVFVPYPVDRHPDHGH 116
Query: 152 CYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQ 211
C E + V +++ + E + + Y + +++ D
Sbjct: 117 CAELVKEAVFNA-RIRNYKAEGGAHHVQDLFY-------YMINSFERPDLLV--DVSHCY 166
Query: 212 RIRDAMVRGHKSQM 225
++ A + +KSQ
Sbjct: 167 EVKQAALNAYKSQF 180
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75562 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
Length = 237
Score = 163 bits (411), Expect = 2e-39
Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 28/206 (13%)
Query: 33 SILFVFAHPDDESMFFGPTID-YLGNQHSTRVHVLCLSNGNA----------DGLGSVRE 81
+L + HPDDE T+ YL S ++ L+ G A + L +R
Sbjct: 14 KLLLIVPHPDDEVYGASGTLMEYLAAGESC--GLVTLTRGEAGRTLGLCDGPEELARMRA 71
Query: 82 KELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNK 141
EL + T + Q D + ++ + + +ER +T++TF
Sbjct: 72 VELAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLRPETVLTFPPN 131
Query: 142 GISGHPNHIACYEGAMKIVKATPQVQV---FVLESVNIFRKYISYLDTIPTLVQSQAGRN 198
G +GHP+H+ + P + S
Sbjct: 132 GSNGHPDHMTTHRAVKAAWDRLPAGSRPVLWYYASETPPENE-ELRAAWLPP-------- 182
Query: 199 DTIIIHADRKSTQRIRDAMVRGHKSQ 224
+ D + + + H+SQ
Sbjct: 183 ---TVKRDVSALVTRKLQAIACHRSQ 205
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
Length = 185
Score = 161 bits (405), Expect = 1e-38
Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 32/211 (15%)
Query: 16 LSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG 75
+ + SS ++ IL + AHPDD + G ++ L Q + + ++ GN+
Sbjct: 4 VLDSALLSSANKRKG---ILAIGAHPDDIELGCGASLARLA-QKGIYIAAVVMTTGNSGT 59
Query: 76 LGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIER---YNI 132
G + E A K +H+ D +A D+ + II+ ++
Sbjct: 60 DGIIDRHEESRNALKILGCHQTIHL----NFAD-TRAHLQLNDMISALEDIIKNQIPSDV 114
Query: 133 KTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQ 192
+ + + H +H+A Y+ +M + PQ+ + S T +
Sbjct: 115 EIMRVYTMHDADRHQDHLAVYQASMVACRTIPQILGYETPS------------TWLS-FM 161
Query: 193 SQAGRNDTIIIHADRKSTQRIRDAMVRGHKS 223
Q + + ++ A ++ HKS
Sbjct: 162 PQVFESVK-------EEYFTVKLAALKKHKS 185
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
proteins [Bacillus subtilis]
sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 160 bits (402), Expect = 2e-38
Identities = 36/199 (18%), Positives = 56/199 (28%), Gaps = 28/199 (14%)
Query: 34 ILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSV--REKELVVAASKY 91
+L AH DD + G TI Q +V + L+ G+V R++E AA
Sbjct: 6 VLAFGAHSDDVEIGMGGTIAKFVKQE-KKVMICDLTEAELSSNGTVSLRKEEAAEAARIL 64
Query: 92 QIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIA 151
DK + D L + I +I K + F HP+H
Sbjct: 65 GADKRIQLTLPDRGL-------IMSDQAIRSIVTVIRICRPKAV--FMPYKKDRHPDHGN 115
Query: 152 CYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTII----IHADR 207
+ + + KY V D
Sbjct: 116 AAALVEEAIFSAG------------IHKYKDEKSLPAHKVSKVYYYMINGFHQPDFVIDI 163
Query: 208 KSTQRIRDAMVRGHKSQMV 226
T + + +KSQ +
Sbjct: 164 SDTIEAKKQSLNAYKSQFI 182
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
Length = 288
Score = 159 bits (400), Expect = 4e-38
Identities = 39/241 (16%), Positives = 74/241 (30%), Gaps = 48/241 (19%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG--------------LGS 78
++ V AHPDDES T+ ++ RV V+ L+ G +
Sbjct: 5 RLMAVHAHPDDESSKGAATLARYADE-GHRVLVVTLTGGERGEILNPAMDLPDVHGRIAE 63
Query: 79 VREKELVVAASKYQIDKTNVHVVSD--------PQLQDGMQAKWDPTDVAKHISQIIERY 130
+R E+ AA ++ T + V P L D A+ + + +++ +
Sbjct: 64 IRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVREF 123
Query: 131 NIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYI--------- 181
+ T+D G HP+HI C++ ++ +A F +
Sbjct: 124 RPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGDFCRFPDAGEPWTVSKLYYVHGFLRE 183
Query: 182 ---------------SYLDTIPTLV-QSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQM 225
+ + + RD +R H +Q+
Sbjct: 184 RMQMLQDEFARHGQRGPFEQWLAYWDPDHDFLTSRVTTRVECSKYFSQRDDALRAHATQI 243
Query: 226 V 226
Sbjct: 244 D 244
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 221
Score = 159 bits (399), Expect = 5e-38
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 39/215 (18%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG---------LGSVREKE 83
ILF+ HPDDE G T+ L S ++++ +++G+A L +R KE
Sbjct: 2 RILFISPHPDDECDNAGGTLAKLA--KSHEIYIVYMTDGSAGSPNPEERGEKLAEIRRKE 59
Query: 84 LVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGI 143
+ I K N ++ P + + VAK + +I +I +
Sbjct: 60 ALEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREI----KPNIII--YPSLL 113
Query: 144 SGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIII 203
GH +H + + + V I +SYL+ + ++
Sbjct: 114 DGHNDHWSGGY-----------ITRIAIRKVGITVNELSYLN-WLPIPSKSVFDAIKYLL 161
Query: 204 H-------ADRKSTQRIRDAMVRGHKSQMVWFRYG 231
D + +RI+ ++ H+SQ F+Y
Sbjct: 162 IPFHRKIKVDIREYKRIKLEAMKKHESQ---FKYL 193
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
Length = 221
Score = 159 bits (399), Expect = 6e-38
Identities = 44/210 (20%), Positives = 79/210 (36%), Gaps = 43/210 (20%)
Query: 32 ESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNA------------DGLGSV 79
E +L + HPDDES I L + V C + G + L +
Sbjct: 3 EHVLVILPHPDDESYGVAGLIA-LNRKKDIPVTYACATLGEMGRNMGDPFFANRETLPLL 61
Query: 80 REKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFD 139
R++EL+ A + I+ + L+D D +A + +II+ ++TF
Sbjct: 62 RKQELINACKEMDINDLRML-----GLRDKTLEFEDDEYLADIMEEIIDDVKPSLIVTFY 116
Query: 140 N-KGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRN 198
G+ HP+H AC E ++ + +RK D T+ +
Sbjct: 117 PGHGV--HPDHDACGEAVIRAL----------------YRKKKE--DRPRTICMAITRNR 156
Query: 199 DTII----IHADRKSTQRIRDAMVRGHKSQ 224
+ ++ + D K I+ +R H++Q
Sbjct: 157 EEVLGEADVVLDIKEVADIKMNALRAHRTQ 186
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 159 bits (399), Expect = 6e-38
Identities = 33/210 (15%), Positives = 66/210 (30%), Gaps = 47/210 (22%)
Query: 26 QEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNAD----------G 75
Q+ + +L V HPDDE++ G TI + ++ V+ +++G
Sbjct: 2 QKSSCMRRVLIVAPHPDDETLCCGGTIQIF-KEKGYKISVIIVTDGRYGSPDDKLKGSSE 60
Query: 76 LGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTL 135
L +R +E + A ID+ D K D +++ + +
Sbjct: 61 LIEIRRQEALRATKILGIDEVKFLNFEDS--------KVSEEDAENALAEFLREND---- 108
Query: 136 ITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQA 195
+ F HP+H + K+ F L N +
Sbjct: 109 VVFSPIPFDNHPDHANIGKAVEKLYPNA----YFYLIWGNTQVNWRE------------- 151
Query: 196 GRNDTIIIHADRKSTQRIRDAMVRGHKSQM 225
+ D + + + + + SQ+
Sbjct: 152 -------VKFDIRKYKESKLRAINQYISQI 174
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
mediterranei]
Length = 255
Score = 158 bits (398), Expect = 6e-38
Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 22/216 (10%)
Query: 31 VESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG-----------NADGLGSV 79
+ +++ AHP+D++ G + ++ RV ++ + G + LG
Sbjct: 1 MGTLVSFHAHPNDDTTTCGGVLRK-AHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDR 59
Query: 80 REKELVVAASKYQIDKTNVHVVSDPQL---QD--GMQAKWDPTDVAKHISQIIERYNIKT 134
R E AA +D+ +D + D G D + A+ ++ I+
Sbjct: 60 RAVEARAAADVLGVDRLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADV 119
Query: 135 LITFDNKGISGHPNHIACYEGAMKIVKATPQVQVF--VLESVNI---FRKYISYLDTIPT 189
L +D KG G P+HI + + + +VF + +I R
Sbjct: 120 LTVYDEKGTYGDPDHIQVHRVGTRAAELAGTAKVFQSTINREHIKANQRVLAEQAGVDLP 179
Query: 190 LVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQM 225
+ D + + + H SQ+
Sbjct: 180 AGPDFGTPEAELTCRVDVSAYTEYKRKALLAHASQI 215
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 221
Score = 158 bits (396), Expect = 1e-37
Identities = 44/209 (21%), Positives = 70/209 (33%), Gaps = 33/209 (15%)
Query: 32 ESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNA------------DGLGSV 79
+L +F HPDDE+ T+ Q V CL+ G + L S+
Sbjct: 5 RHVLVIFPHPDDETFSSAGTLASYI-QKGIPVTYACLTLGQMGRNLGNPPFATRESLPSI 63
Query: 80 REKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFD 139
RE+EL A I + L+D + I +I+ N +I+F
Sbjct: 64 RERELEEACKVIGIT-----DLRKMGLRDKTVEFEPYEHIDGMIKSLIDDTNPSLIISFY 118
Query: 140 NKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRND 199
G + HP+H A + ++ V+ P+ + L V L
Sbjct: 119 P-GYAVHPDHEATADAVIRTVERMPKEERPRLTLVAFSNDATEALGEPD----------- 166
Query: 200 TIIIHADRKSTQRIRDAMVRGHKSQMVWF 228
I D + ++ H SQ F
Sbjct: 167 ---IQNDITDFKELKIKAFEAHASQTGPF 192
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
Length = 290
Score = 151 bits (378), Expect = 2e-35
Identities = 46/241 (19%), Positives = 83/241 (34%), Gaps = 48/241 (19%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN--------------ADGLGS 78
++ V AHPDDES T+ ++ RV V+ L+ G +
Sbjct: 5 RLMAVHAHPDDESSKGAATLARYADE-GHRVLVVTLTGGERGEILNPAMDLPDVHGHIAE 63
Query: 79 VREKELVVAASKYQIDKTNVHVVSD--------PQLQDGMQAKWDPTDVAKHISQIIERY 130
+R E+ AA ++ T + + P L D A + + +++ ++
Sbjct: 64 IRRDEMAKAAEILGVEHTWLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVVRKF 123
Query: 131 NIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVF----------VLESVNIFRKY 180
L T+D G HP+HI C++ ++ +A + F L + F +
Sbjct: 124 RPHVLTTYDENGGYPHPDHIRCHQVSVDAYEAACDYRRFPDAGKPWTVSKLYYNHGFLRA 183
Query: 181 ISYLDTIPTLVQSQAGRNDT---------------IIIHADRKSTQRIRDAMVRGHKSQM 225
L QAG D + + + RD +R H +Q+
Sbjct: 184 RMQLLHDEFAKHGQAGPFDKWLAQSNPAHDPFESRVTTRVECSAYFSQRDDALRAHATQI 243
Query: 226 V 226
Sbjct: 244 D 244
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 308
Score = 144 bits (362), Expect = 1e-33
Identities = 46/249 (18%), Positives = 74/249 (29%), Gaps = 56/249 (22%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN----------------ADGL 76
+LFV AHPDDES+ G TI + ++ +V V+ + G AD L
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSR-GAQVQVVTCTLGEEGEVIGDRWAELTVDHADQL 64
Query: 77 GSVREKELVVAASKYQIDKTNVHVVSDPQLQDGM----------QAKWDPTDVAKHISQI 126
G R EL A + + GM D + + I
Sbjct: 65 GGYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAI 124
Query: 127 IERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKA-----------------TPQVQVF 169
I ++T+D G GHP+H+ + V + +V F
Sbjct: 125 IRELRPHVVVTYDPHGGYGHPDHVHTHFITAAAVASSGVAAGLEVGADEYPGKPWKVPKF 184
Query: 170 VLESVNIFRKYISY-------LDTIPTLVQ----SQAGRNDTI-IIHADRKSTQRIRDAM 217
+ L T+ + I + + A
Sbjct: 185 YWSVFALSAFEAGMNALQGKDLRPEWTIPPREEFYFGYSDKDIDAVVEATSDVWAAKTAA 244
Query: 218 VRGHKSQMV 226
+ H +Q+V
Sbjct: 245 LTAHATQVV 253
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
radiodurans]
Length = 239
Score = 142 bits (355), Expect = 7e-33
Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 28/196 (14%)
Query: 35 LFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLG--SVREKELVVAASKYQ 92
L + HPDD + G T+ L Q V +L L+ G G + R+ E V AA
Sbjct: 18 LCLAPHPDDAEIGAGGTLIRLA-QAGRAVGILELTRGEKGTQGTPAERQAECVAAARLMD 76
Query: 93 IDKTNVHVVSDPQLQD-GMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIA 151
+ + D +L D A ++ + + L+ HP+H
Sbjct: 77 LSWRGQLGLPDGELADTPPFAH--------ALAAALRTVRPRVLVV--PHWHDRHPDHFG 126
Query: 152 CYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTI--PTLVQSQAGRNDTIIIHADRKS 209
Y + + +K D ++ Q + + + D S
Sbjct: 127 TYHLTKRAIHLAA------------LKKADLGGDPWRVQRVLLYQGNSDISANVLVDIGS 174
Query: 210 TQRIRDAMVRGHKSQM 225
+A +R H SQ
Sbjct: 175 VMTEWEAAIRAHTSQF 190
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
Length = 151
Score = 141 bits (353), Expect = 1e-32
Identities = 59/143 (41%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 8 LLVTAIAVLSTANESSSGQEKLAVE-SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVL 66
L+VT + VL S L + IL + AHPDDE+MFF PTI L Q RV VL
Sbjct: 7 LIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALL-QAGHRVFVL 65
Query: 67 CLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQI 126
C+SNGN DGLG +R +EL AASK I ++V + + DG W+ + + + +
Sbjct: 66 CISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADG--DTWNRNALCQIVMRH 123
Query: 127 IERYNIKTLITFDNKGISGHPNH 149
+E T+I+FD+ G+SGH NH
Sbjct: 124 VEVLAADTVISFDSHGVSGHHNH 146
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
Length = 277
Score = 140 bits (351), Expect = 2e-32
Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 39/228 (17%)
Query: 34 ILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSN-----------GNADGLGS---- 78
++ V AHPDDE+ G + + V V C G+ +
Sbjct: 8 LMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGHDPAAVAL 67
Query: 79 VREKELVVAASKYQIDKTNVHVVSDPQL-----QDGMQAKW--DPTDVAKHISQIIERYN 131
+R +EL + +I +D + D + W + A +++++ Y
Sbjct: 68 MRRRELEESRDILKISDLETLDYADSGMMGWPSNDAPGSFWRTPVEEGAARLAELMRHYR 127
Query: 132 IKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLV 191
++T+D G GHP+HI + M ++ T R + I
Sbjct: 128 PDVVVTYDENGFYGHPDHIQAHRITMAALEMTTLTPKVY--WTTAPRSMMQRFGEIMREF 185
Query: 192 QS---------------QAGRNDTIIIHADRKSTQRIRDAMVRGHKSQ 224
++ I D S + + H SQ
Sbjct: 186 HPDMPEPDPAEAAAMAEIGLPDEEITTWVDTTSFSGQKFDALAAHASQ 233
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 137 bits (342), Expect = 3e-31
Identities = 27/161 (16%), Positives = 51/161 (30%), Gaps = 20/161 (12%)
Query: 16 LSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNAD- 74
++ + L V AHPDD I ++ V + + G A
Sbjct: 1 MTEPTITQLEPMPGDWRRALAVVAHPDDLEYGCAAAIAAWTDE-GREVAYVLATRGEAGI 59
Query: 75 ------GLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIE 128
+RE+E +A+ + + D ++ G + + I+ I
Sbjct: 60 DTLAPAECAPLREREQRASAAVVGVSEVEFLDHRDGVVEYGT-------ALRRDIAAAIR 112
Query: 129 RYNIKTLITF---DNKGI--SGHPNHIACYEGAMKIVKATP 164
R+ + +IT D G P+H+A +
Sbjct: 113 RHRPELVITMNHRDTWGGVAWNTPDHVAVGRATLDAAADAG 153
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 295
Score = 137 bits (342), Expect = 3e-31
Identities = 38/160 (23%), Positives = 57/160 (34%), Gaps = 25/160 (15%)
Query: 29 LAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG------------- 75
L +L V AHPDDES+ G T+ + + V C + G
Sbjct: 4 LPGRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTC-TLGERGEVIPPALAHLSGAA 62
Query: 76 LGSVREKELVVAASKYQIDKTNVHV----VSDPQL-----QDGMQAKWD--PTDVAKHIS 124
LG R EL A +D + +D + D W A +
Sbjct: 63 LGGHRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAALLV 122
Query: 125 QIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKATP 164
+I + L+T+D G GHP+HI + AM+ +
Sbjct: 123 DVIREVRPQVLVTYDPNGGYGHPDHIQAHRIAMRAAELAA 162
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 135 bits (338), Expect = 7e-31
Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 22/197 (11%)
Query: 31 VESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLG--SVREKELVVAA 88
+ +L V HPDD + G T+ +L L+ G G REKE+ A+
Sbjct: 1 MLDLLVVAPHPDDGELGCGGTLAR-AKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEAS 59
Query: 89 SKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPN 148
+D + DG A + ++Q + R + + F HP+
Sbjct: 60 RILGLDFR-----GNLGFPDGGLADVPEQRL--KLAQALRRLRPRVV--FAPLEADRHPD 110
Query: 149 HIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRK 208
H A A+ V + LE + + + S
Sbjct: 111 HTAASRLAVAAVHLAGLRKAP-LEGEPFRVERLFFYPGNHPFAPS---------FLVKIS 160
Query: 209 STQRIRDAMVRGHKSQM 225
+ +A V ++SQ
Sbjct: 161 AFIDQWEAAVLAYRSQF 177
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
Length = 250
Score = 135 bits (337), Expect = 1e-30
Identities = 37/193 (19%), Positives = 64/193 (32%), Gaps = 17/193 (8%)
Query: 35 LFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLG--SVREKELVVAASKYQ 92
L AHPDD + G T+ + ++ V V L+ G LG R +E +A +
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDE-GKPVAVCDLTAGEMGTLGTAETRRQEAALATERMG 71
Query: 93 IDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIAC 152
+ D +L + + K I +II +Y T+ F N HP+H+
Sbjct: 72 YVAREQLDLGDSEL------FYTKESLHKII-RIIRKYRPDTV--FCNPPDERHPDHMKA 122
Query: 153 YEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQR 212
+ ++ + + L+ + I D ST
Sbjct: 123 SRLIYEACYYAGLRKIETFDGGLPQAAH-----RPRHLLYYIQFKQLEPQIVVDVSSTFE 177
Query: 213 IRDAMVRGHKSQM 225
A + +Q
Sbjct: 178 RSRAGIEAFGTQF 190
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 135 bits (337), Expect = 1e-30
Identities = 37/193 (19%), Positives = 64/193 (32%), Gaps = 17/193 (8%)
Query: 35 LFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLG--SVREKELVVAASKYQ 92
L AHPDD + G T+ + ++ V V L+ G LG R +E +A +
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDE-GKPVAVCDLTAGEMGTLGTAETRRQEAALATERMG 71
Query: 93 IDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIAC 152
+ D +L + + K I +II +Y T+ F N HP+H+
Sbjct: 72 YVAREQLDLGDSEL------FYTKESLHKII-RIIRKYRPDTV--FCNPPDERHPDHMKA 122
Query: 153 YEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQR 212
+ ++ + + L+ + I D ST
Sbjct: 123 SRLIYEACYYAGLRKIETFDGGLPQAAH-----RPRHLLYYIQFKQLEPQIVVDVSSTFE 177
Query: 213 IRDAMVRGHKSQM 225
A + +Q
Sbjct: 178 RSRAGIEAFGTQF 190
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
Length = 228
Score = 133 bits (332), Expect = 4e-30
Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 32/204 (15%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG---NADGLGSVREK-ELVVAA 88
L V HPDDE + G TI L + V V ++ G D + R + E A
Sbjct: 10 RTLVVAPHPDDEVLGAGGTIARLAAE-GEEVFVAVVTEGKPPAFDPEATARIQAEARQAH 68
Query: 89 SKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPN 148
+ +T + QL + A + + +++ R + +T++ H +
Sbjct: 69 RALGVTETIWLRLPAAQLAETAHATVN-----AALLELVHRLSPQTVLL--PFVGDMHMD 121
Query: 149 HIACYEGAMKIV-----KATPQVQVFVLESV-NIFRKYISYLDTIPTLVQSQAGRNDTII 202
H + A+ + V + S N Y+S
Sbjct: 122 HQLTFTSALVACRPHQAEFPKLVLAYETLSETNWNAPYLSPA------FVPNVF------ 169
Query: 203 IHADRKSTQRIRDAMVRGHKSQMV 226
D + + SQ+
Sbjct: 170 --VDISEHLEAKLKAMELFASQVR 191
>pir||S44952 lmbE protein - Streptomyces lincolnensis
pir||S69814 lmbE protein - Streptomyces lincolnensis
emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
Length = 270
Score = 129 bits (323), Expect = 4e-29
Identities = 45/234 (19%), Positives = 74/234 (31%), Gaps = 39/234 (16%)
Query: 32 ESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLG-------------S 78
+ +L V AHPDDE+ G T+ + Q V V C G + L +
Sbjct: 3 QCLLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVA 62
Query: 79 VREKELVVAASKYQIDKTNVHVVSDPQLQDGM------QAKWDPTDVAKHISQIIERYNI 132
VR EL +A + D + DG + + A ++++I
Sbjct: 63 VRSAELDASARNLGYSAVHRLGYRDSGM-DGTAGGAEAFVRAPLDEAATRLARVIADERP 121
Query: 133 KTLITF-DNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYI---------- 181
+I + N HP+HI E + V + + R
Sbjct: 122 DVVIGYGTNHTRDPHPDHIRANEVLTRRVDLLDHTPAVYHIAFSRRRHRALHQACVDSGV 181
Query: 182 -SYLDTIPTLVQSQAGRNDTIIIHADR--KSTQRIRDAMVRGHKSQMV----WF 228
S + + A ++ I D R +R H +Q+ WF
Sbjct: 182 PSPYEGGLSA-PPGAFDDEWITTLVDVTKGDAVERRLDALRSHVTQVPPASGWF 234
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 815
Score = 128 bits (320), Expect = 9e-29
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 28/177 (15%)
Query: 16 LSTANESSSGQEKLAVESILFV---FAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN 72
++ ++ A++S + V AHPDDE + Y + R + C + G
Sbjct: 27 MADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYFRTELGMRTIIACSTRGE 83
Query: 73 ADG----------LGSVREKELVVAASKYQIDKTNVH-----VVSDPQLQ---DGMQAKW 114
LG +R +EL AA D + + ++ D D +W
Sbjct: 84 GGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRW 143
Query: 115 DPTDVAKHISQIIERYNIKTLI-TF-DNKGISGHPNHIACYEGAMKIVKATPQVQVF 169
+ + + + + +I TF D G GH H A A + +
Sbjct: 144 GQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRAAKSAITLAADPSAY 198
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 800
Score = 128 bits (320), Expect = 9e-29
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 28/177 (15%)
Query: 16 LSTANESSSGQEKLAVESILFV---FAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN 72
++ ++ A++S + V AHPDDE + Y + R + C + G
Sbjct: 12 MADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYFRTELGMRTIIACSTRGE 68
Query: 73 ADG----------LGSVREKELVVAASKYQIDKTNVH-----VVSDPQLQ---DGMQAKW 114
LG +R +EL AA D + + ++ D D +W
Sbjct: 69 GGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRW 128
Query: 115 DPTDVAKHISQIIERYNIKTLI-TF-DNKGISGHPNHIACYEGAMKIVKATPQVQVF 169
+ + + + + +I TF D G GH H A A + +
Sbjct: 129 GQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRAAKSAITLAADPSAY 183
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
Length = 303
Score = 128 bits (320), Expect = 1e-28
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGN----------------ADGL 76
+LFV AHPDDES+ G TI + ++ +VHV+ + G AD L
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSR-GAQVHVVTCTLGEEGEVIGDRWAQLTADHADQL 64
Query: 77 GSVREKELVVAASKYQIDKTNVHVVSDPQLQDGM----------QAKWDPTDVAKHISQI 126
G R EL A + + GM DP + I
Sbjct: 65 GGYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAI 124
Query: 127 IERYNIKTLITFDNKGISGHPN 148
I ++T+D G GHP+
Sbjct: 125 IRELRPHVVVTYDPNGGYGHPD 146
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 124
Score = 125 bits (312), Expect = 8e-28
Identities = 44/111 (39%), Positives = 70/111 (62%), Gaps = 1/111 (0%)
Query: 47 FFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQL 106
FF PTI+YL + ++ +H+LCLS GNADG+GS+R EL A + ++ + +++ P L
Sbjct: 7 FFSPTINYLAS-NACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNL 65
Query: 107 QDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAM 157
QDG W + + I + + +++I T+ITFDN G+SGH NH + G +
Sbjct: 66 QDGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVL 116
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
Length = 185
Score = 122 bits (305), Expect = 5e-27
Identities = 43/154 (27%), Positives = 71/154 (45%), Gaps = 35/154 (22%)
Query: 47 FFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQL 106
FF PTI+Y + + +H+LC S GNADG+GS+R++EL A + ++
Sbjct: 51 FFSPTINYFTST-ACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIP----------- 98
Query: 107 QDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQV 166
+D + + S N + +ITFDN G+ GH NH + G +
Sbjct: 99 -------FDKEGICDNDSCHC---NEEHIITFDNYGVWGHCNHRDVHRGVL--------- 139
Query: 167 QVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDT 200
S+NIFRKY +D +++ ++ +
Sbjct: 140 ----YVSLNIFRKYCGPVDIWLSILSAKRHPSKV 169
>emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces rochei]
Length = 234
Score = 121 bits (303), Expect = 9e-27
Identities = 22/204 (10%), Positives = 52/204 (24%), Gaps = 26/204 (12%)
Query: 30 AVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVV--- 86
V +L V HPDD+ + G ++ + + V+ + + +V E E
Sbjct: 3 GVTDVLVVAPHPDDDVIGCGGSMAKHVREGARVTVVVVIGRERSALDDAVTEAEFAAETE 62
Query: 87 -AASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISG 145
AA + + S + D + +++ + + +
Sbjct: 63 NAAKILGVHRCVRFDESSRDFAPSRRIHLD-------LVRVLREVRPQVV--YLPHDNDD 113
Query: 146 HPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQA---GRNDTII 202
H + + + +S +
Sbjct: 114 DVEHRMVHRLTTEALWMA--------QSEFFQ--EAGECPMPAPRLVLGYEVWSPMARYQ 163
Query: 203 IHADRKSTQRIRDAMVRGHKSQMV 226
D + +R + SQ+
Sbjct: 164 YAEDIGEHIHTKVEAMRAYVSQLR 187
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 120 bits (300), Expect = 2e-26
Identities = 38/129 (29%), Positives = 57/129 (43%), Gaps = 15/129 (11%)
Query: 30 AVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG-------LGSVREK 82
+L VFAHPDDES G + Q TR+ LC ++G A LG VR +
Sbjct: 9 CAHEVLAVFAHPDDESFGLGAVLGDFTAQ-GTRLRGLCFTHGEASTLGRTDRNLGEVRRE 67
Query: 83 ELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKG 142
EL AA +D + D L A+ ++ + + + L+ FD+ G
Sbjct: 68 ELAAAAQVLGVDHVQLLAYPDNGL-----AQIPLNELTQRVVDALA--GADLLLVFDDNG 120
Query: 143 ISGHPNHIA 151
++GHP+H
Sbjct: 121 VTGHPDHRR 129
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
Length = 218
Score = 120 bits (299), Expect = 2e-26
Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 34/206 (16%)
Query: 31 VESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLG-SVREKELVVAAS 89
+ S+L V AHPDD + G I + + V V CL+ G G VR +E + A
Sbjct: 1 MTSVLVVVAHPDDAEIAMGMRIHWYA-LNGATVRVHCLTTGTPAPDGTEVRRQECLSAGE 59
Query: 90 KYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNH 149
+D+ + D + + + + + + T H +H
Sbjct: 60 LLGVDQYTFSSIPDTRFVENRG------RINADLFDVFREARPDIIYTHYPD--DQHLDH 111
Query: 150 IACYEGAMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKS 209
+ R+ L + G
Sbjct: 112 SVTAREVT-----------------TVARREAPNLRHFRS--PYSVGFEPNEFF-FGTAE 151
Query: 210 TQRIRDAMVRGHKSQ----MVWFRYG 231
+ ++ SQ M FR
Sbjct: 152 LLEAKVRALKCFASQTQLDMDVFRQL 177
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
tuberculosis H37Rv]
pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
H37Rv]
Length = 223
Score = 120 bits (299), Expect = 3e-26
Identities = 38/129 (29%), Positives = 57/129 (43%), Gaps = 15/129 (11%)
Query: 30 AVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG-------LGSVREK 82
+L VFAHPDDES G + Q TR+ LC ++G A LG VR +
Sbjct: 9 CAHEVLAVFAHPDDESFGLGAVLGDFTAQ-GTRLRGLCFTHGEASTLGRTDRNLGEVRRE 67
Query: 83 ELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKG 142
EL AA +D + D L A+ ++ + + + L+ FD+ G
Sbjct: 68 ELAAAAQVLGVDHVQLLAYPDNGL-----AQIPLNELTQRVVDALA--GADLLLVFDDNG 120
Query: 143 ISGHPNHIA 151
++GHP+H
Sbjct: 121 VTGHPDHRR 129
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 229
Score = 114 bits (283), Expect = 2e-24
Identities = 36/199 (18%), Positives = 58/199 (29%), Gaps = 41/199 (20%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG------LGSVREKELVV 86
IL + AHPDD +F T+ Q + ++G G L VR +E
Sbjct: 2 KILALGAHPDDIEIFMFGTLAVYAAQ-GAELTFAVATDGAKGGKSDATVLARVRREEATA 60
Query: 87 AASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGH 146
AA + DG + + +I +IT H
Sbjct: 61 AAGLLGAAPRFL------DFPDG--ELVADAALIGALKTLIAGTGPDLVITHAPNDY--H 110
Query: 147 PNHIACYEGA-MKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHA 205
+H A + + A P + G + T +
Sbjct: 111 ADHRALSDSVRIAASFAVPVLHADT---------------------MGGTGFSPTHYV-- 147
Query: 206 DRKSTQRIRDAMVRGHKSQ 224
D + I+ +R H+SQ
Sbjct: 148 DISAHAEIKAKAIRMHQSQ 166
>ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80196.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
Length = 601
Score = 111 bits (277), Expect = 1e-23
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 32 ESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKY 91
+ I+ + H DDE G TI L + + V V+ +NG+ GLG+ R KE V A
Sbjct: 51 KEIMVIVPHQDDEINLAGATIKRLID-NGNNVKVVFATNGDFKGLGTKRIKEAVEAVRIL 109
Query: 92 QIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQII---ERYNIKTLITFDNKGISGHP 147
++ NV + + + +D K IS I E Y + F ISG P
Sbjct: 110 GVNSENVIFLGYGDRWEETKEHIYNSDDNKIISSYIGKNETYGTDKYLDF-RSSISGEP 167
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
Length = 252
Score = 107 bits (266), Expect = 2e-22
Identities = 26/140 (18%), Positives = 51/140 (35%), Gaps = 21/140 (15%)
Query: 33 SILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNG---------NADGLGSVREKE 83
I+ VFAHPDDE + T+ + V ++ + G + + +R +
Sbjct: 2 RIMAVFAHPDDE-IGCIGTLAKHARR-GDEVLLVWTTLGELASQFGDTEHEEVRRIRREH 59
Query: 84 LVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGI 143
A K K + + D ++ G A ++++ + +IT+ +
Sbjct: 60 GAWVADKIGA-KYHFFDMGDSRMTGGRDE-------ALQLARLYATFRPHAVITWSDD-- 109
Query: 144 SGHPNHIACYEGAMKIVKAT 163
HP+H + A V
Sbjct: 110 HPHPDHRMTAKIAFDAVTLA 129
>ref|NP_414898.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||D64764 hypothetical protein b0364 - Escherichia coli
gb|AAC73467.1| (AE000143) orf, hypothetical protein [Escherichia coli K12]
Length = 136
Score = 107 bits (265), Expect = 3e-22
Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 28/160 (17%)
Query: 67 CLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQI 126
++ GN+ G + E A K +H+ D +A D+ + I
Sbjct: 2 VMTTGNSGTDGIIDRHEESRNALKILGCHQTIHL----NFAD-TRAHLQLNDMISALEDI 56
Query: 127 IER---YNIKTLITFDNKGISGHPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISY 183
I+ +++ + + H +H+A Y+ +M + PQ+ + S
Sbjct: 57 IKNQIPSDVEIMRVYTMHDADRHQDHLAVYQASMVACRTIPQILGYETPS---------- 106
Query: 184 LDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKS 223
T + Q + + ++ A ++ HKS
Sbjct: 107 --TWLS-FMPQVFESVK-------EEYFTVKLAALKKHKS 136
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
Length = 247
Score = 101 bits (252), Expect = 8e-21
Identities = 29/156 (18%), Positives = 47/156 (29%), Gaps = 10/156 (6%)
Query: 16 LSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNA-- 73
++ + + L V AHPDD + V L + G A
Sbjct: 1 MTDSAPAPLRSMPDDWRRALAVVAHPDDLEYGCSAAVASWVA-DGKDVAYLLATRGEAGI 59
Query: 74 DGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIK 133
D L R L A + V V +DG + + I+ + R+ +
Sbjct: 60 DTLDPGRAGPLREAEQRAAAAAVGVRAVEFLDHRDG--VIEYGASLRRDIAAAVRRHRPE 117
Query: 134 TLITF---DNK--GISGHPNHIACYEGAMKIVKATP 164
+IT D G P+H+A +
Sbjct: 118 LVITLNHRDTWAAGAWNTPDHVAVGRAVLDAAADAG 153
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
Length = 232
Score = 98.1 bits (242), Expect = 1e-19
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 38/205 (18%)
Query: 36 FVFAHPDDESMFFGPTIDYLGNQHSTRVHVLCLSNGNADG----------LGSVREKELV 85
V HPDDE++ G + + V L L++G L +VR E
Sbjct: 15 VVAPHPDDEALGCG-ALLAALAEAGREVWALLLTDGGFSHPASKAYPRPRLSAVRLAEWR 73
Query: 86 VAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISG 145
S + + L DG + + Q + T++
Sbjct: 74 EGLSVLGVPPARTVAL---GLPDGALGEHLTAAARAQVRQAFAQARPGTVLL--PWERDP 128
Query: 146 HPNHIACYEGAMKIVKATPQVQVFVLESVNIFRKYISYL-----DTIPTLVQSQAGRNDT 200
HP+H A + VL S + +Y +L D ++
Sbjct: 129 HPDHRA-----------AWHLLRGVLPSDTLALEYAVWLPERGADADWP------RPDEV 171
Query: 201 IIIHADRKSTQRIRDAMVRGHKSQM 225
+ + + + H++Q+
Sbjct: 172 EELTFAVGDWRDAKARAIASHRTQL 196
>pir||D69906 hypothetical protein yojG - Bacillus subtilis
emb|CAB13838.1| (Z99114) yojG [Bacillus subtilis]
gb|AAC17855.1| (AF026147) YojG [Bacillus subtilis]
Length = 142
Score = 96.5 bits (238), Expect = 4e-19
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 25/125 (20%)
Query: 105 QLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDN-KGISGHPNHIACYEGAMKIVKAT 163
L+D D +A + +II+ ++TF G+ HP+H AC E ++ +
Sbjct: 3 GLRDKTLEFEDDEYLADIMEEIIDDVKPSLIVTFYPGHGV--HPDHDACGEAVIRAL--- 57
Query: 164 PQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTII----IHADRKSTQRIRDAMVR 219
+RK D T+ + + ++ + D K I+ +R
Sbjct: 58 -------------YRKKKE--DRPRTICMAITRNREEVLGEADVVLDIKEVADIKMNALR 102
Query: 220 GHKSQ 224
H++Q
Sbjct: 103 AHRTQ 107
CPU time: 70.23 user secs. 2.38 sys. secs 72.61 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.315 0.172 0.507
Gapped
Lambda K H
0.270 0.0604 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177889407
Number of Sequences: 887402
Number of extensions: 8577099
Number of successful extensions: 29481
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 29179
Number of HSP's gapped (non-prelim): 213
length of query: 248
length of database: 277,845,442
effective HSP length: 56
effective length of query: 192
effective length of database: 228,150,930
effective search space: 43804978560
effective search space used: 43804978560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.2 bits)
S2: 72 (32.1 bits)
