Sequences with E-value BETTER than threshold (0.002) 329 2e-89
307 1e-82
257 2e-67
251 7e-66
200 2e-50
192 7e-48
191 7e-48
191 1e-47
190 2e-47
187 2e-46
186 3e-46
186 4e-46
176 3e-43
176 4e-43
172 7e-42
169 5e-41
168 1e-40
168 1e-40
165 5e-40
165 8e-40
164 2e-39
163 3e-39
161 1e-38
156 4e-37
156 5e-37
152 6e-36
149 5e-35
144 1e-33
139 6e-32
138 7e-32
138 1e-31
137 1e-31
137 2e-31
136 3e-31
135 7e-31
135 9e-31
134 1e-30
134 2e-30
133 2e-30
131 8e-30
129 6e-29
128 8e-29
125 6e-28
121 1e-26
120 2e-26
116 4e-25
116 4e-25
112 7e-24
109 4e-23
96 8e-19
Alignments
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
Length = 252
Score = 329 bits (837), Expect = 2e-89
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MEVVGLLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPT 60
MEVVGLLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPT
Sbjct: 1 MEVVGLLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPT 60
Query: 61 ILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEV 120
ILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEV
Sbjct: 61 ILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEV 120
Query: 121 QWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL 180
QWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL
Sbjct: 121 QWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL 180
Query: 181 TLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVF 240
TLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVF
Sbjct: 181 TLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVF 240
Query: 241 SRYMSVNSLQLL 252
SRYMSVNSLQLL
Sbjct: 241 SRYMSVNSLQLL 252
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
Length = 252
Score = 307 bits (780), Expect = 1e-82
Identities = 195/252 (77%), Positives = 213/252 (84%)
Query: 1 MEVVGLLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPT 60
ME + LLCVA+AVL WGFL VW+S+ERM+S EQ G GA SR L+VIAHPDDEAMFFAPT
Sbjct: 1 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
Query: 61 ILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEV 120
+LGLARL+ V LLCFS+GNYYNQGE RKKELLQSC VLGIP S VMIID R+FPDDP +
Sbjct: 61 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
Query: 121 QWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL 180
QWDTEHVA +LQHI N +LVVTFDA GVSGHSNHIALY AVRALHS GKLP+GCSVL
Sbjct: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
Query: 181 TLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVF 240
TLQSVNVLRKY+ LLDLP +LL Q VLFVL SKEVAQAKKAMSCHRSQLLWFR LY +F
Sbjct: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
Query: 241 SRYMSVNSLQLL 252
SRYM +NSL L
Sbjct: 241 SRYMRINSLSFL 252
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
deacetylase [Schizosaccharomyces pombe]
Length = 248
Score = 257 bits (651), Expect = 2e-67
Identities = 80/248 (32%), Positives = 122/248 (48%), Gaps = 14/248 (5%)
Query: 14 LTWGFLRVWNSAERMRSPEQAGLPGAG----SRALVVIAHPDDEAMFFAPTILGL-ARLK 68
+ W + + +A + S G L V AHPDDE+MFF PTI L +
Sbjct: 1 MIWFWSTLLVTAIAVLSTANESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHS 60
Query: 69 QQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVA 128
+V +LC S+GN G +R+KEL+ + + I + V ++ + D + +WD VA
Sbjct: 61 TRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVA 120
Query: 129 STILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVL 188
I Q I ++TFD +G+SGH NHIA Y+ + V L+SVN+
Sbjct: 121 KHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKAT---PQVQVFVLESVNIF 177
Query: 189 RKYVFLLDLPWTLLSPQG-----VLFVLTSKEVAQAKKAM-SCHRSQLLWFRHLYTVFSR 242
RKY+ LD TL+ Q ++ K + + AM H+SQ++WFR+ + S+
Sbjct: 178 RKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWIYLSK 237
Query: 243 YMSVNSLQ 250
YMS N L+
Sbjct: 238 YMSNNVLK 245
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
Length = 390
Score = 251 bits (637), Expect = 7e-66
Identities = 99/263 (37%), Positives = 140/263 (52%), Gaps = 34/263 (12%)
Query: 17 GFLRVWNSAERMRS---PEQAGLPGAGSRALVVIAHPDDEAMFFAPTILGLAR-LKQQVS 72
G + S R+RS P+ A + R L++ AHPDDE MFF P I L + QV
Sbjct: 117 GLKQALQSGIRLRSVRLPKTACM----ERVLLITAHPDDECMFFGPLIYSLTQRQGCQVY 172
Query: 73 LLCFSSGN---------------------YYNQGEIRKKELLQSCAVLGIPPSRVMIIDK 111
+LC S+G + ++ ++R++EL +SC+ LGIP S +++++
Sbjct: 173 ILCLSNGETTSSDIIPKPPIDLEALNESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNA 232
Query: 112 REFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGG 171
PDDP V W + VAS IL I + + TFD +GVS H NH A+Y A +L
Sbjct: 233 TNLPDDPYVDWRPDAVASLILHTIESLDIQAIFTFDRDGVSSHPNHCAVYYAAASLCLAN 292
Query: 172 KLPEG----CSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHR 227
LP+G C TL S+NV+RKY+ +LDL T +L KE A + AM H+
Sbjct: 293 LLPKGEEAYCKFYTLDSINVVRKYLSILDLLCTCFMSTH-WCILNWKEAAIVRSAMMEHQ 351
Query: 228 SQLLWFRHLYTVFSRYMSVNSLQ 250
SQ+ WFR LY FSRYM +NS++
Sbjct: 352 SQMRWFRWLYIYFSRYMFINSMR 374
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75562 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
Length = 237
Score = 200 bits (505), Expect = 2e-50
Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 31 PEQAGLPGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-------- 82
P G G + L+++ HPDDE + T++ + L+ + G
Sbjct: 3 PTMTSETGKGLKLLLIVPHPDDEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCDG 62
Query: 83 --NQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANAT 140
+R EL V+G+ + + ++ +FPD + E + T + +
Sbjct: 63 PEELARMRAVELAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLRP 122
Query: 141 DLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWT 200
+ V+TF G +GH +H+ ++AV+A +LP G + + L W
Sbjct: 123 ETVLTFPPNGSNGHPDHMTTHRAVKAA--WDRLPAGSRPVLWYYASETPPENEELRAAWL 180
Query: 201 LLSPQGVLFVLTSKEVAQAKKAMSCHRSQ 229
+ + + L + + +A++CHRSQ
Sbjct: 181 PPTVKRDVSALVT----RKLQAIACHRSQ 205
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
Length = 223
Score = 192 bits (484), Expect = 7e-48
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 23/201 (11%)
Query: 52 DEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDK 111
D+ FF+PTI + +LCFS+GN G IR +EL ++CAVL + P DK
Sbjct: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIP-----FDK 88
Query: 112 REFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGG 171
D+ + EH ++TFD GV GH NH ++ +
Sbjct: 89 EGICDNDSCHCNEEH----------------IITFDNYGVWGHCNHRDVHPPIDCKIDSA 132
Query: 172 KLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQG--VLFVLTSKEVAQAKKAMSCHRSQ 229
K G + S+N+ RKY +D+ ++LS + ++ +K+ ++ KAM+ H SQ
Sbjct: 133 KRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQHLSQ 192
Query: 230 LLWFRHLYTVFSRYMSVNSLQ 250
+WFR L+ +FS Y VN+L
Sbjct: 193 WVWFRKLFVLFSSYTYVNTLD 213
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
cerevisiae)
emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
Length = 304
Score = 191 bits (483), Expect = 7e-48
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 38/244 (15%)
Query: 45 VVIAHPDDEAMFFAPTILGLARLKQQVS---LLCFSSGNYYNQGEIRKKELLQSCAVLGI 101
+VIAHPDDE MFF+P I L + ++C S GN GE R +EL +S A+L +
Sbjct: 59 LVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL-L 117
Query: 102 PPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIH---ANATDLVVTFDAEGVSGHSNHI 158
R + + +F D + WD + + S++ Q I N ++VTFD+ GVS H NH
Sbjct: 118 HNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHK 177
Query: 159 ALYKAVRALHS--------GGKLPEGCSVLTLQSV--NVLRKYVF----LLDLPWTLLSP 204
+ Y AV+ L + P + L L+S N++ KY +L + + L+SP
Sbjct: 178 SCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISP 237
Query: 205 Q-GVLFVLTSKEVAQAKK----------------AMSCHRSQLLWFRHLYTVFSRYMSVN 247
++ L A+ K ++ H SQ++WFR+ + +FSR++ VN
Sbjct: 238 FRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVN 297
Query: 248 SLQL 251
+
Sbjct: 298 EFDV 301
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 267
Score = 191 bits (481), Expect = 1e-47
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 25/210 (11%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY---------NQGEIRK 89
+ L + HPDD + TI L +V C + G IR+
Sbjct: 30 DVEKVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRR 89
Query: 90 KELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAE 149
+E +S +LG+ + E P + V +++ I D V D
Sbjct: 90 REEEESSKLLGVKKIYWLNYRDTELP-------YSREVRKDLVRIIRKEKPDGVFLPDPW 142
Query: 150 GVS-GHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVL 208
H +H + LP +V V + + + + +
Sbjct: 143 LPYEAHPDHRNTGFLALDAVAFSPLPNFSNVD----VEIGLGPHQVSFIALYYTN-KPNY 197
Query: 209 FVLTSKEVAQAKKAMSCHRSQL---LWFRH 235
FV + + KA+ H+SQ +W
Sbjct: 198 FVDITDVMELKLKAIRTHKSQFPDDVWEVW 227
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 190 bits (480), Expect = 2e-47
Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 24/210 (11%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY---------NQGEIRK 89
+ L + HPDD + TI L+ + +V +C + G IR+
Sbjct: 34 DAKKVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSGHELAAIRR 93
Query: 90 KELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAE 149
KE +S +LG+ + E P + V + + + D V D
Sbjct: 94 KEEEESARLLGVKKIYWLNYRDTELP-------YSREVRKDLTKILRKEQPDGVFAPDPW 146
Query: 150 GVS-GHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVL 208
H +H + +LP + +N Y + +
Sbjct: 147 LPYESHPDHRRTGFLAIESVAFSQLPNFSNTDLDIGLN---PYNSGSFIALYYTH-KPNY 202
Query: 209 FVLTSKEVAQAKKAMSCHRSQL---LWFRH 235
V + + KA+ HRSQ +W +
Sbjct: 203 IVDITDLMELKLKAIRVHRSQFPDDIWEKW 232
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 267
Score = 187 bits (472), Expect = 2e-46
Identities = 37/210 (17%), Positives = 70/210 (32%), Gaps = 25/210 (11%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY---------NQGEIRK 89
+ + + HPDD A+ TI L+ +V +C + G IR+
Sbjct: 30 DAKKVICIEPHPDDCAIGMGGTIKKLSDEGVEVIYICMTDGYMGTTDEKLSGHELALIRR 89
Query: 90 KELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAE 149
+E +S +LG+ + E P + V +++ I D V D
Sbjct: 90 REEEESAKLLGVRKIYWLNYRDTELP-------YSREVRKDLVKIIRKEKPDGVFAPDPW 142
Query: 150 GVS-GHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVL 208
H +H + +LP ++ +++ K + + +
Sbjct: 143 LPYESHPDHRRTGFLAIESVAFSQLPNFSNID----IDIGLKPHSVSFIALYYTH-KPNY 197
Query: 209 FVLTSKEVAQAKKAMSCHRSQL---LWFRH 235
V + + KA+ HRSQ +W
Sbjct: 198 IVDITDLMELKLKAIRAHRSQFTDDIWETW 227
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
Length = 288
Score = 186 bits (469), Expect = 3e-46
Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 61/260 (23%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYN--------------Q 84
+ R + V AHPDDE+ A T+ A +V ++ + G
Sbjct: 2 SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRI 61
Query: 85 GEIRKKELLQSCAVLGIPPSRVMIIDK--------REFPDDPEVQWDTEHVASTILQHIH 136
EIR+ E+ ++ +LG+ + + +D PDD + E +++ +
Sbjct: 62 AEIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVR 121
Query: 137 ANATDLVVTFDAEGVSGHSNHIALY----KAVRALHSGGKLPEGCSVLT---LQSVNVLR 189
++ T+D G H +HI + A A + P+ T L V+
Sbjct: 122 EFRPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGDFCRFPDAGEPWTVSKLYYVHGFL 181
Query: 190 KY--------------VFLLDLPWTLLSPQGVLF-------VLTSKEVAQAKKAMSCHRS 228
+ + P V SK +Q A+ H +
Sbjct: 182 RERMQMLQDEFARHGQRGPFEQWLAYWDPDHDFLTSRVTTRVECSKYFSQRDDALRAHAT 241
Query: 229 QL-----------LWFRHLY 237
Q+ W L+
Sbjct: 242 QIDPNAEFFAAPLAWQERLW 261
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75517 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
Length = 281
Score = 186 bits (468), Expect = 4e-46
Identities = 51/227 (22%), Positives = 84/227 (36%), Gaps = 27/227 (11%)
Query: 32 EQAGLPGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY--------- 82
+ P + LV+ AHPDDEA T+ AR +V L C + G
Sbjct: 2 TSSSTPAPRATLLVIFAHPDDEAFSVGGTLTHYARQGVRVVLACATRGEAGKITVPGMTV 61
Query: 83 -NQGEIRKKELLQSCAVLGIPPSRVMIIDKRE-----FPDDPEVQWDTEHVAS--TILQH 134
+ G R++EL ++C L I P + DDP + + + +
Sbjct: 62 DDLGAQREQELREACRALEIEPPVFLDYHDSGRYERTRHDDPTALMNVNPLDAEVKLRAL 121
Query: 135 IHANATDLVVTFDAEGVSGHSNHIALYKAVRAL-HSGGKLPEGCSVLTLQSVNVLRKYVF 193
I ++VTFD G GH +H+ +++A A S G LP G + +
Sbjct: 122 IEDVQPQVIVTFDPHGAYGHVDHLQMHRATVAAFFSTGHLPSGGPQRLYYTAMTHQAAAQ 181
Query: 194 L--------LDLPWTLLS-PQGVLFVLTSKEVAQAKKAMSCHRSQLL 231
+ LD +S + + K A++ H +Q+
Sbjct: 182 ISRLGHDQSLDPLVYGVSDSTLAVTMDVGAYAENKKAALAAHGTQMG 228
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
Length = 290
Score = 176 bits (444), Expect = 3e-43
Identities = 47/260 (18%), Positives = 86/260 (33%), Gaps = 61/260 (23%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGN--------------YYNQ 84
+ R + V AHPDDE+ A T+ A +V ++ + G + +
Sbjct: 2 SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGHI 61
Query: 85 GEIRKKELLQSCAVLGIPPSRVMIIDK--------REFPDDPEVQWDTEHVASTILQHIH 136
EIR+ E+ ++ +LG+ + + ID PDD E +++ +
Sbjct: 62 AEIRRDEMAKAAEILGVEHTWLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVVR 121
Query: 137 ANATDLVVTFDAEGVSGHSNHIALYK----AVRALHSGGKLPEGCSVLT---LQSVNVLR 189
++ T+D G H +HI ++ A A + P+ T L +
Sbjct: 122 KFRPHVLTTYDENGGYPHPDHIRCHQVSVDAYEAACDYRRFPDAGKPWTVSKLYYNHGFL 181
Query: 190 KYV--------------FLLDLPWTLLSPQGVLF-------VLTSKEVAQAKKAMSCHRS 228
+ D +P F V S +Q A+ H +
Sbjct: 182 RARMQLLHDEFAKHGQAGPFDKWLAQSNPAHDPFESRVTTRVECSAYFSQRDDALRAHAT 241
Query: 229 Q-----------LLWFRHLY 237
Q + W + L+
Sbjct: 242 QIDPKAEFFAAPISWQQRLW 261
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
Length = 293
Score = 176 bits (443), Expect = 4e-43
Identities = 48/252 (19%), Positives = 78/252 (30%), Gaps = 56/252 (22%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY---------------N 83
R + V AHPDDE+ A T+ V ++ + G N
Sbjct: 3 DQLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIEEN 62
Query: 84 QGEIRKKELLQSCAVLGIPPSRVMIIDK--------REFPDDPEVQWDTEHVASTILQHI 135
E+R+KE+ ++ +LG+ + +D P+ D + A +++ I
Sbjct: 63 IHEVRRKEMDEAREILGVGQEWLGFVDSGLPEGDPLPPLPEGCFALEDVDKAAGELVRKI 122
Query: 136 HANATDLVVTFDAEGVSGHSNHIALYKAVRA----LHSGGKLPEGC--------SVLTLQ 183
+ ++ T+D G H +HI +K K PE V Q
Sbjct: 123 RSFRPQVITTYDENGGYPHPDHIMTHKITMVAFEGAADTEKYPESEYGTAYQPLKVYYNQ 182
Query: 184 SVNVLR---------------KYVFLLDLPWTLLSPQGVLFVLTS--KEVAQAKKAMSCH 226
N R Y L + L KA+ H
Sbjct: 183 GFNRPRTEALHHALLDRGLESPYEDWLKRWSEFERKERTLTTHVPCADFFEIRDKALIAH 242
Query: 227 RSQL----LWFR 234
+Q+ WFR
Sbjct: 243 ATQIDPEGGWFR 254
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 172 bits (432), Expect = 7e-42
Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 33/208 (15%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-NQG-----------E 86
LV+ HPDDEA + TI + V+ C + G N G +
Sbjct: 3 QERHVLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESLPD 62
Query: 87 IRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTF 146
IRKKEL++S +GI R++ + D D + + + L++TF
Sbjct: 63 IRKKELIKSAEAMGIEDLRML-----GYRDKTIEFEDETKLTDMVSDLMAELNPSLIITF 117
Query: 147 DAEGVSGHSNHIALYKAVRALHSGGKLPEGCSV--LTLQSVNVLRKYVFLLDLPWTLLSP 204
G S H +H A +AV +L + + N ++ + D+ +
Sbjct: 118 YP-GYSVHPDHEATGRAVVRAVR--RLEKSMRPKLYGVAFSNGHQEELGDPDILF----- 169
Query: 205 QGVLFVLTSKEVAQAKKAMSCHRSQLLW 232
S Q K A+ H SQ W
Sbjct: 170 ------DISPVAEQKKAAIRAHISQTAW 191
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 292
Score = 169 bits (425), Expect = 5e-41
Identities = 48/244 (19%), Positives = 73/244 (29%), Gaps = 36/244 (14%)
Query: 15 TW----GFLRVWNSAERMRSPEQAGLPGAGSRALVVIA-HPDDEAMFFAPTILGLARLKQ 69
TW R+ +S RMR + S + V+ A HPDDE +
Sbjct: 19 TWDVRQALCRILDS--RMRRRFKPFDVADWSASSVIFAPHPDDETLGCGGVSAKKLASGV 76
Query: 70 QVSLLCFSSGNY--------YNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQ 121
+V + + G R+ E L++ LG V + FPD
Sbjct: 77 EVRFVFVTDGAASHRRLISPEELRSRRESEALEAVHRLGASSESVTFLR---FPDAEASH 133
Query: 122 WDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGC---S 178
+ I+ + V F S+HIA+ AVRA P
Sbjct: 134 -HIHAITKAIVPLLERWRPQSV--FVTHAKDPPSDHIAVNAAVRAALRWHGRPLTVFEYP 190
Query: 179 VLTLQSVNVLRKYVFLLDLPWTLLSPQ------------GVLFVLTSKEVAQAKKAMSCH 226
V +R L + T L V + + + A++ H
Sbjct: 191 VWYWYHWPWVRPAGDLPGMWRTTLRQTVKTVAGLRALSALNTLVPIGEFLDVKRHALAAH 250
Query: 227 RSQL 230
SQ
Sbjct: 251 VSQT 254
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
Length = 250
Score = 168 bits (422), Expect = 1e-40
Identities = 33/196 (16%), Positives = 69/196 (34%), Gaps = 13/196 (6%)
Query: 37 PGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQG--EIRKKELLQ 94
P AL AHPDD + T+L + + V++ ++G G E R++E
Sbjct: 6 PIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAAL 65
Query: 95 SCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGH 154
+ +G + + + + T+ I++ I D V + H
Sbjct: 66 ATERMG-------YVAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPDE--RH 116
Query: 155 SNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSK 214
+H+ + + L + + R L + + L PQ V+ V ++
Sbjct: 117 PDHMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQFKQLEPQIVVDVSST- 175
Query: 215 EVAQAKKAMSCHRSQL 230
+++ + +Q
Sbjct: 176 -FERSRAGIEAFGTQF 190
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 168 bits (422), Expect = 1e-40
Identities = 33/196 (16%), Positives = 69/196 (34%), Gaps = 13/196 (6%)
Query: 37 PGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQG--EIRKKELLQ 94
P AL AHPDD + T+L + + V++ ++G G E R++E
Sbjct: 6 PIQPVYALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAAL 65
Query: 95 SCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGH 154
+ +G + + + + T+ I++ I D V + H
Sbjct: 66 ATERMG-------YVAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPDE--RH 116
Query: 155 SNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSK 214
+H+ + + L + + R L + + L PQ V+ V ++
Sbjct: 117 PDHMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQFKQLEPQIVVDVSST- 175
Query: 215 EVAQAKKAMSCHRSQL 230
+++ + +Q
Sbjct: 176 -FERSRAGIEAFGTQF 190
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
Length = 277
Score = 165 bits (416), Expect = 5e-40
Identities = 44/233 (18%), Positives = 75/233 (31%), Gaps = 39/233 (16%)
Query: 36 LPGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSS------------GNYYN 83
+ + V AHPDDEA + A + L+ + G+ +
Sbjct: 1 MTDRPLTLMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGH 60
Query: 84 ----QGEIRKKELLQSCAVLGIPPSRVMIIDK---REFP--DDPEVQW--DTEHVASTIL 132
+R++EL +S +L I + +P D P W E A+ +
Sbjct: 61 DPAAVALMRRRELEESRDILKISDLETLDYADSGMMGWPSNDAPGSFWRTPVEEGAARLA 120
Query: 133 QHIHANATDLVVTFDAEGVSGHSNHIALYKAVRAL---------HSGGKLPEGCSVLTLQ 183
+ + D+VVT+D G GH +HI ++ A P +
Sbjct: 121 ELMRHYRPDVVVTYDENGFYGHPDHIQAHRITMAALEMTTLTPKVYWTTAPRSMMQRFGE 180
Query: 184 SVNVLRKYVFLLDLPWTLLSPQGVLF-------VLTSKEVAQAKKAMSCHRSQ 229
+ + D + L V T+ Q A++ H SQ
Sbjct: 181 IMREFHPDMPEPDPAEAAAMAEIGLPDEEITTWVDTTSFSGQKFDALAAHASQ 233
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 221
Score = 165 bits (414), Expect = 8e-40
Identities = 45/209 (21%), Positives = 71/209 (33%), Gaps = 33/209 (15%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-NQG-----------E 86
LV+ HPDDE A T+ + V+ C + G N G
Sbjct: 3 DERHVLVIFPHPDDETFSSAGTLASYIQKGIPVTYACLTLGQMGRNLGNPPFATRESLPS 62
Query: 87 IRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTF 146
IR++EL ++C V+GI + K D EH+ I I L+++F
Sbjct: 63 IRERELEEACKVIGITD-----LRKMGLRDKTVEFEPYEHIDGMIKSLIDDTNPSLIISF 117
Query: 147 DAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL--TLQSVNVLRKYVFLLDLPWTLLSP 204
G + H +H A AV + ++P+ + N + + D+
Sbjct: 118 YP-GYAVHPDHEATADAVI--RTVERMPKEERPRLTLVAFSNDATEALGEPDIQN----- 169
Query: 205 QGVLFVLTSKEVAQAKKAMSCHRSQLLWF 233
+ KA H SQ F
Sbjct: 170 ------DITDFKELKIKAFEAHASQTGPF 192
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 164 bits (412), Expect = 2e-39
Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 33/198 (16%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGN--YYNQGEIRKKELLQSCAVLG 100
L AHPDD + T+ + +V + + E R+KE + +LG
Sbjct: 6 ILAFGAHPDDVEIGMGATLYHYRQKGHRVGICNLTKAELSSNGTVEQRQKEAADASRILG 65
Query: 101 IPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIAL 160
I + + R + +E I+ I V F V H +H
Sbjct: 66 IDERIQLDLPDRGLRN------PSEQQVRNIVSVIRHCQPTFV--FVPYPVDRHPDHGHC 117
Query: 161 YKAVRALHSGGKLP--------EGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLT 212
+ V+ ++ L +N + L V
Sbjct: 118 AELVKEAVFNARIRNYKAEGGAHHVQDLFYYMINSFERP---------------DLLVDV 162
Query: 213 SKEVAQAKKAMSCHRSQL 230
S + A++ ++SQ
Sbjct: 163 SHCYEVKQAALNAYKSQF 180
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 308
Score = 163 bits (410), Expect = 3e-39
Identities = 40/248 (16%), Positives = 65/248 (26%), Gaps = 58/248 (23%)
Query: 42 RALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGN----------------YYNQG 85
R L V AHPDDE++ TI QV ++ + G G
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65
Query: 86 EIRKKELLQSCAVLGIPPSRVMIIDKREFPDDP----------EVQWDTEHVASTILQHI 135
R EL ++ LG+ + R + D ++ I
Sbjct: 66 GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125
Query: 136 HANATDLVVTFDAEGVSGHSNHIALYKAVRA--------------LHSGGKLPEGCSVLT 181
+VVT+D G GH +H+ + A P
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTHFITAAAVASSGVAAGLEVGADEYPGKPWKVPKFY 185
Query: 182 LQ--------------SVNVLRKY-VFLLDLPWTLLSPQGVLFVLT---SKEVAQAKKAM 223
LR + + + S A A+
Sbjct: 186 WSVFALSAFEAGMNALQGKDLRPEWTIPPREEFYFGYSDKDIDAVVEATSDVWAAKTAAL 245
Query: 224 SCHRSQLL 231
+ H +Q++
Sbjct: 246 TAHATQVV 253
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
proteins [Bacillus subtilis]
sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 161 bits (404), Expect = 1e-38
Identities = 30/202 (14%), Positives = 59/202 (28%), Gaps = 36/202 (17%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGN--YYNQGEIRKKELLQSCAVLG 100
L AH DD + TI + +++V + + +RK+E ++ +LG
Sbjct: 6 VLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTEAELSSNGTVSLRKEEAAEAARILG 65
Query: 101 IPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIAL 160
+ + R + +I+ I V F H +H
Sbjct: 66 ADKRIQLTLPDRGLIMSDQA-------IRSIVTVIRICRPKAV--FMPYKKDRHPDHGNA 116
Query: 161 YKAVRALHSGGK---------LPEG-CSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFV 210
V LP S + +N Q +
Sbjct: 117 AALVEEAIFSAGIHKYKDEKSLPAHKVSKVYYYMINGFH---------------QPDFVI 161
Query: 211 LTSKEVAQAKKAMSCHRSQLLW 232
S + K++++ ++SQ +
Sbjct: 162 DISDTIEAKKQSLNAYKSQFIP 183
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 156 bits (392), Expect = 4e-37
Identities = 46/219 (21%), Positives = 81/219 (36%), Gaps = 32/219 (14%)
Query: 28 MRSPEQAG---LPGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-- 82
M P +PG RAL V+AHPDD A I ++V+ + + G
Sbjct: 1 MTEPTITQLEPMPGDWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGID 60
Query: 83 -----NQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHA 137
+R++E S AV+G+ V +D R+ + + I I
Sbjct: 61 TLAPAECAPLREREQRASAAVVGVSE--VEFLDHRDGVVEYG-----TALRRDIAAAIRR 113
Query: 138 NATDLVVTF---DAEGV--SGHSNHIALYKAVRALHSGGKLPEGCSVLT---LQSVNVLR 189
+ +LV+T D G +H+A+ +A + LT L+ N +R
Sbjct: 114 HRPELVITMNHRDTWGGVAWNTPDHVAVGRATLDAAADAGNRWIFPELTDRGLEPWNGVR 173
Query: 190 KYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRS 228
+ + + SP + +A +++ HR+
Sbjct: 174 ----WVAVAGS-SSPTHAVDATPGM--ERAVRSLLEHRT 205
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 221
Score = 156 bits (391), Expect = 5e-37
Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 22/200 (11%)
Query: 42 RALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYN---------QGEIRKKEL 92
R L + HPDDE T+ LA ++ ++ + G+ + EIR+KE
Sbjct: 2 RILFISPHPDDECDNAGGTLAKLA-KSHEIYIVYMTDGSAGSPNPEERGEKLAEIRRKEA 60
Query: 93 LQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVS 152
L+ VLGI ++ + ++ +E VA + + ++++ +
Sbjct: 61 LEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREI----KPNIII--YPSLLD 114
Query: 153 GHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLR-KYVFLLDLPWTLLSPQGVLF-V 210
GH++H + R G +V L +N L + D LL P V
Sbjct: 115 GHNDHWSGGYITRIAIRKV----GITVNELSYLNWLPIPSKSVFDAIKYLLIPFHRKIKV 170
Query: 211 LTSKEVAQAKKAMSCHRSQL 230
+ +AM H SQ
Sbjct: 171 DIREYKRIKLEAMKKHESQF 190
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 152 bits (382), Expect = 6e-36
Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQG--EIRKKELLQSCAVLG 100
LVV HPDD + T+ +L + G ++G E R+KE+ ++ +LG
Sbjct: 4 LLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILG 63
Query: 101 IPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIAL 160
+ FPD + + + Q + +V F H +H A
Sbjct: 64 LD-----FRGNLGFPDGGLADVPEQRL--KLAQALRRLRPRVV--FAPLEADRHPDHTAA 114
Query: 161 YKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAK 220
+ A L + L + R +P V S + Q +
Sbjct: 115 SRLAVAAVHLAGLRKA--PLEGEP---FRVERLFFYPGNHPFAP--SFLVKISAFIDQWE 167
Query: 221 KAMSCHRSQL 230
A+ +RSQ
Sbjct: 168 AAVLAYRSQF 177
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
Length = 221
Score = 149 bits (374), Expect = 5e-35
Identities = 44/202 (21%), Positives = 75/202 (36%), Gaps = 29/202 (14%)
Query: 41 SRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-NQGE-----------IR 88
LV++ HPDDE+ A I + V+ C + G N G+ +R
Sbjct: 3 EHVLVILPHPDDESYGVAGLIALNRKKDIPVTYACATLGEMGRNMGDPFFANRETLPLLR 62
Query: 89 KKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDA 148
K+EL+ +C + I R++ D D E++A + + I L+VTF
Sbjct: 63 KQELINACKEMDINDLRML-----GLRDKTLEFEDDEYLADIMEEIIDDVKPSLIVTFYP 117
Query: 149 EGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVL 208
G H +H A +AV K + T+ + R +L + +
Sbjct: 118 -GHGVHPDHDACGEAVIRALYRKKKED--RPRTICMA-ITRNREEVLG--------EADV 165
Query: 209 FVLTSKEVAQAKKAMSCHRSQL 230
+ + A+ HR+Q
Sbjct: 166 VLDIKEVADIKMNALRAHRTQT 187
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
Length = 228
Score = 144 bits (361), Expect = 1e-33
Identities = 41/206 (19%), Positives = 73/206 (34%), Gaps = 22/206 (10%)
Query: 33 QAGLPGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSG---NYYNQGEIRK 89
G + R LVV HPDDE + TI LA ++V + + G + + R
Sbjct: 1 MGGGQISFGRTLVVAPHPDDEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATARI 60
Query: 90 K-ELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDA 148
+ E Q+ LG+ + + + + + + + +L+ +H + V+
Sbjct: 61 QAEARQAHRALGVTETIWLRLPAAQLAETAHATVN-----AALLELVHRLSPQTVLL--P 113
Query: 149 EGVSGHSNHIA--LYKAVRALHSGGKLPEGCSVL-TLQSVNVLRKYVFLLDLPWTLLSPQ 205
H +H V + P+ TL N Y+ +P
Sbjct: 114 FVGDMHMDHQLTFTSALVACRPHQAEFPKLVLAYETLSETNWNAPYLSPAFVP------- 166
Query: 206 GVLFVLTSKEVAQAKKAMSCHRSQLL 231
+FV S+ + KAM SQ+
Sbjct: 167 -NVFVDISEHLEAKLKAMELFASQVR 191
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 295
Score = 139 bits (348), Expect = 6e-32
Identities = 43/188 (22%), Positives = 70/188 (36%), Gaps = 26/188 (13%)
Query: 36 LPG-AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYN----------- 83
+ G R L+V AHPDDE++ T+ A V+L+ + G
Sbjct: 1 MTDLPGRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSG 60
Query: 84 --QGEIRKKELLQSCAVLGIPPSRVMIIDKR-------EFP--DDPEVQWD--TEHVAST 130
G R+ EL + LG+ R++ R DDP W + A+
Sbjct: 61 AALGGHRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAAL 120
Query: 131 ILQHIHANATDLVVTFDAEGVSGHSNHIALYK-AVRALHSGGKLPEGCSVLTLQSVNVLR 189
++ I ++VT+D G GH +HI ++ A+RA + + + V R
Sbjct: 121 LVDVIREVRPQVLVTYDPNGGYGHPDHIQAHRIAMRAAELAAEAGCPVAKVYWNRVPRSR 180
Query: 190 KYVFLLDL 197
L
Sbjct: 181 VEDAFARL 188
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
radiodurans]
Length = 239
Score = 138 bits (347), Expect = 7e-32
Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 37/204 (18%)
Query: 37 PGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGE--IRKKELLQ 94
P L + HPDD + T++ LA+ + V +L + G QG R+ E +
Sbjct: 14 PLDW---LCLAPHPDDAEIGAGGTLIRLAQAGRAVGILELTRGEKGTQGTPAERQAECVA 70
Query: 95 SCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGH 154
+ ++ + + PD A + + ++V H
Sbjct: 71 AARLM-----DLSWRGQLGLPDGELADTPP--FAHALAAALRTVRPRVLVV--PHWHDRH 121
Query: 155 SNH--------IALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQG 206
+H A++ A G P + L N
Sbjct: 122 PDHFGTYHLTKRAIHLAALKKADLGGDPWRVQRVLLYQGNSDISAN-------------- 167
Query: 207 VLFVLTSKEVAQAKKAMSCHRSQL 230
+ V + + + A+ H SQ
Sbjct: 168 -VLVDIGSVMTEWEAAIRAHTSQF 190
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 138 bits (346), Expect = 1e-31
Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 47/203 (23%)
Query: 41 SRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY----------NQGEIRKK 90
R L+V HPDDE + TI ++S++ + G Y EIR++
Sbjct: 8 RRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRRQ 67
Query: 91 ELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEG 150
E L++ +LGI + + + + ++ +A + + D+V +
Sbjct: 68 EALRATKILGIDEVKFLNFEDSKVSEEDAE----NALAEFLRE------NDVVFSPIPF- 116
Query: 151 VSGHSNHIALYKAVRALH--SGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVL 208
H +H + KAV L+ + L G + + + V
Sbjct: 117 -DNHPDHANIGKAVEKLYPNAYFYLIWGNTQVNWREVKF--------------------- 154
Query: 209 FVLTSKEVAQAKKAMSCHRSQLL 231
K +A++ + SQ+
Sbjct: 155 --DIRKYKESKLRAINQYISQIG 175
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
Length = 185
Score = 137 bits (344), Expect = 1e-31
Identities = 30/191 (15%), Positives = 60/191 (30%), Gaps = 29/191 (15%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEI-RKKELLQSCAVLGI 101
L + AHPDD + ++ LA+ ++ + ++GN G I R +E + +LG
Sbjct: 19 ILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGC 78
Query: 102 PPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANAT---DLVVTFDAEGVSGHSNHI 158
+ + + S + I +++ + H +H+
Sbjct: 79 HQTIHLNFADTR------AHLQLNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHL 132
Query: 159 ALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTS-KEVA 217
A+Y+A + W PQ +F +
Sbjct: 133 AVYQASMVACRT------IPQILGYETPST----------WLSFMPQ--VFESVKEEYFT 174
Query: 218 QAKKAMSCHRS 228
A+ H+S
Sbjct: 175 VKLAALKKHKS 185
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
Length = 151
Score = 137 bits (344), Expect = 2e-31
Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 39 AGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAV 98
+ SR L++IAHPDDE MFF+PTI L + +V +LC S+GN+ G+IR +EL ++ +
Sbjct: 30 SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKIRARELSRAASK 89
Query: 99 LGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNH 157
LGI S V+ +D EF D W+ + +++H+ A D V++FD+ GVSGH NH
Sbjct: 90 LGISASDVICLDYDEFADGD--TWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
>ref|NP_403747.1| (NC_003143) hypothetical protein [Yersinia pestis]
emb|CAC88949.1| (AJ414141) hypothetical protein [Yersinia pestis]
Length = 310
Score = 136 bits (341), Expect = 3e-31
Identities = 36/231 (15%), Positives = 58/231 (24%), Gaps = 54/231 (23%)
Query: 38 GAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEI---------- 87
ALVV AH D I QV ++C S G ++
Sbjct: 69 IPQKTALVVSAHSADFVWRAGGAIALHVEQGYQVHIVCLSYGERGESAKLWRKGDMTEER 128
Query: 88 ----RKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLV 143
R E + VLG D ++P + + V
Sbjct: 129 VKASRHTEAQAAANVLGASIE---FFDMGDYPLR-----ADKESLFRLADVFRRIQPHFV 180
Query: 144 VTF---DAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPW- 199
+T D H +A A A R ++ P
Sbjct: 181 LTHSLADPYNYD-HP--LAANLAQEARIIA-------------QAEGYRPGEAIIGAPPV 224
Query: 200 TLLSP--------QGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVFSR 242
P + + + + + A+ C Q HL+ ++R
Sbjct: 225 YCFEPHQPEQCGWKPDVLLDITSVWEKKYAAIQCMAGQ----EHLWEYYTR 271
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 135 bits (338), Expect = 7e-31
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-------NQGEIRKKELLQS 95
L V AHPDDE+ + ++ LCF+ G N GE+R++EL +
Sbjct: 13 VLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAAA 72
Query: 96 CAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHS 155
VLG+ +++ PD+ Q + ++ + DL++ FD GV+GH
Sbjct: 73 AQVLGVDHVQLLAY-----PDNGLAQIPLNELTQRVVDALA--GADLLLVFDDNGVTGHP 125
Query: 156 NHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSK- 214
+H +A A S G VL + + L+ ++ L
Sbjct: 126 DHRRATEAALAAAST----PGIPVLAWA---LPQPIADRLNAEFSASFGGRGHGHLDIMI 178
Query: 215 EVAQAK--KAMSCHRSQ-----LLWFR 234
EV +++ A+ CH +Q +LW R
Sbjct: 179 EVDRSRQLAAIGCHFTQSADNPVLWRR 205
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
mediterranei]
Length = 255
Score = 135 bits (337), Expect = 9e-31
Identities = 37/222 (16%), Positives = 69/222 (30%), Gaps = 36/222 (16%)
Query: 46 VIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-----------NQGEIRKKELLQ 94
AHP+D+ + +V L+ + G G+ R E
Sbjct: 7 FHAHPNDDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVEARA 66
Query: 95 SCAVLGIPPSRVMIIDKREFPD-------DPEVQWDTEHVASTILQHIHANATDLVVTFD 147
+ VLG+ R+ + + D E A + + D++ +D
Sbjct: 67 AADVLGVD--RLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTVYD 124
Query: 148 AEGVSGHSNHIALYK-AVRALHSGG-----------KLPEGCSVLTLQSVNVLRKYVFLL 195
+G G +HI +++ RA G + + + + V
Sbjct: 125 EKGTYGDPDHIQVHRVGTRAAELAGTAKVFQSTINREHIKANQRVLAEQAGVDLPAGPDF 184
Query: 196 DLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLY 237
P L+ + V S +KA+ H SQ+ L+
Sbjct: 185 GTPEAELTCR----VDVSAYTEYKRKALLAHASQITPQSTLF 222
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
Length = 218
Score = 134 bits (336), Expect = 1e-30
Identities = 34/189 (17%), Positives = 63/189 (32%), Gaps = 26/189 (13%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGN-YYNQGEIRKKELLQSCAVLGI 101
LVV+AHPDD + I A V + C ++G + E+R++E L + +LG+
Sbjct: 4 VLVVVAHPDDAEIAMGMRIHWYALNGATVRVHCLTTGTPAPDGTEVRRQECLSAGELLGV 63
Query: 102 PPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALY 161
I F + + + + + D++ T + H +H
Sbjct: 64 DQYTFSSIPDTRFVE------NRGRINADLFDVFREARPDIIYTHYPD--DQHLDHSVTA 115
Query: 162 KAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKK 221
+ V + + P + SV F + + +
Sbjct: 116 REVTT-VARREAPNLRHFRSPYSV-GFEPNEFFFGTA---------------ELLEAKVR 158
Query: 222 AMSCHRSQL 230
A+ C SQ
Sbjct: 159 ALKCFASQT 167
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
tuberculosis H37Rv]
pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
H37Rv]
Length = 223
Score = 134 bits (335), Expect = 2e-30
Identities = 49/207 (23%), Positives = 83/207 (39%), Gaps = 29/207 (14%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY-------NQGEIRKKELLQS 95
L V AHPDDE+ + ++ LCF+ G N GE+R++EL +
Sbjct: 13 VLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAAA 72
Query: 96 CAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHS 155
VLG+ +++ PD+ Q + ++ + DL++ FD GV+GH
Sbjct: 73 AQVLGVDHVQLLAY-----PDNGLAQIPLNELTQRVVDALA--GADLLLVFDDNGVTGHP 125
Query: 156 NHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSK- 214
+H +A A S VL + + L+ ++ L
Sbjct: 126 DHRRATEAALAAAST----PSIPVLAWA---LPQPIADRLNAEFSASFGGRGHGHLDIMI 178
Query: 215 EVAQAK--KAMSCHRSQ-----LLWFR 234
EV +++ A+ CH +Q +LW R
Sbjct: 179 EVDRSRQLAAIGCHFTQSADNPVLWRR 205
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
Length = 303
Score = 133 bits (334), Expect = 2e-30
Identities = 34/177 (19%), Positives = 49/177 (27%), Gaps = 36/177 (20%)
Query: 42 RALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGN----------------YYNQG 85
R L V AHPDDE++ TI QV ++ + G G
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65
Query: 86 EIRKKELLQSCAVLGIPPSRVMIIDKREFPDDP----------EVQWDTEHVASTILQHI 135
R EL + LG+ + R V D ++ I
Sbjct: 66 GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125
Query: 136 HANATDLVVTFDAEGVSGHSNHIALYKAVRAL----------HSGGKLPEGCSVLTL 182
+VVT+D G GH +H+ + A P
Sbjct: 126 RELRPHVVVTYDPNGGYGHPDHVHTHTVTTAAVAAAGVGSGTADHPGDPWTVPKFYW 182
>pir||S44952 lmbE protein - Streptomyces lincolnensis
pir||S69814 lmbE protein - Streptomyces lincolnensis
emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
Length = 270
Score = 131 bits (329), Expect = 8e-30
Identities = 42/237 (17%), Positives = 69/237 (28%), Gaps = 53/237 (22%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQ--------------GEIR 88
L V AHPDDEA T+ + L+ + G +R
Sbjct: 5 LLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVR 64
Query: 89 KKELLQSCAVLGIPPSRVMIIDKREFPDDPEV-------QWDTEHVASTILQHIHANATD 141
EL S LG V + R+ D + + A+ + + I D
Sbjct: 65 SAELDASARNLGYSA--VHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPD 122
Query: 142 LVVTF-DAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLR----------- 189
+V+ + H +HI +A L L + + + R
Sbjct: 123 VVIGYGTNHTRDPHPDHI---RANEVLTRRVDLLDHTPAV--YHIAFSRRRHRALHQACV 177
Query: 190 ------KYVFLLDLPWTLLSPQGV---LFVLTSKEVAQAKKAMSCHRSQL----LWF 233
Y L P + + + V V + A+ H +Q+ WF
Sbjct: 178 DSGVPSPYEGGLSAPPGAFDDEWITTLVDVTKGDAVERRLDALRSHVTQVPPASGWF 234
>ref|NP_385870.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC46343.1| (AL591788) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 244
Score = 129 bits (322), Expect = 6e-29
Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 53/225 (23%)
Query: 44 LVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEI--------------RK 89
LVV AH D I AR V+++C S G ++ R+
Sbjct: 7 LVVSAHSADFVWRAGGAIAAHARQGYAVTVVCLSFGERGESAKLWKKSGMTLETVKADRR 66
Query: 90 KELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTF--- 146
+E + LG+ + D ++P +Q E ++ + ++T
Sbjct: 67 REAENAAKALGVHDI--LFYDLGDYP----IQVTPEAF-DRLVDLYREIRPEFMLTHSRQ 119
Query: 147 DAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPW-TLLSP- 204
D H +A A A + + +L P L P
Sbjct: 120 DPYNFD-HP--MATEFAQHARVIA-------------QAHGHKPSTPVLGAPPVYLFEPH 163
Query: 205 -------QGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVFSR 242
+ + + + A+ C Q HL+ ++R
Sbjct: 164 QPEQCNWKPNFLLDITDVWEKKLAAIKCMEGQ----EHLWEYYTR 204
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 124
Score = 128 bits (321), Expect = 8e-29
Identities = 37/109 (33%), Positives = 58/109 (52%)
Query: 56 FFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFP 115
FF+PTI LA + +LC S+GN G IR EL ++CAVL +P ++ I++
Sbjct: 7 FFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQ 66
Query: 116 DDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAV 164
D W + + I + + + ++TFD GVSGH NH +++ V
Sbjct: 67 DGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGV 115
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
Length = 185
Score = 125 bits (313), Expect = 6e-28
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 37/151 (24%)
Query: 56 FFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFP 115
FF+PTI + +LCFS+GN G IR +EL ++CAVL + P DK
Sbjct: 51 FFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIP-----FDKEGIC 105
Query: 116 DDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPE 175
D+ + EH ++TFD GV GH NH +++ V
Sbjct: 106 DNDSCHCNEEH----------------IITFDNYGVWGHCNHRDVHRGV----------- 138
Query: 176 GCSVLTLQSVNVLRKYVFLLDLPWTLLSPQG 206
S+N+ RKY +D+ ++LS +
Sbjct: 139 -----LYVSLNIFRKYCGPVDIWLSILSAKR 164
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
Length = 247
Score = 121 bits (302), Expect = 1e-26
Identities = 38/208 (18%), Positives = 69/208 (32%), Gaps = 25/208 (12%)
Query: 34 AGLPGAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYY--NQGEIRKKE 91
+P RAL V+AHPDD + + + V+ L + G R
Sbjct: 10 RSMPDDWRRALAVVAHPDDLEYGCSAAVASWVADGKDVAYLLATRGEAGIDTLDPGRAGP 69
Query: 92 L---LQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTF-- 146
L Q A + V +D R+ + + I + + +LV+T
Sbjct: 70 LREAEQRAAAAAVGVRAVEFLDHRDGVIEYGA-----SLRRDIAAAVRRHRPELVITLNH 124
Query: 147 -DAE--GVSGHSNHIALYKAVRALHSGGKLPEGCSVL---TLQSVNVLRKYVFLLDLPWT 200
D G +H+A+ +AV + L L N +R + + +
Sbjct: 125 RDTWAAGAWNTPDHVAVGRAVLDAAADAGNRWIFPELAEQGLVPWNGVR----WVAVANS 180
Query: 201 LLSPQGVLFVLTSKEVAQAKKAMSCHRS 228
+P + Q +++ HR+
Sbjct: 181 P-TPSHAVSAEPG--FEQGVRSLLRHRT 205
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 229
Score = 120 bits (300), Expect = 2e-26
Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 35/194 (18%)
Query: 42 RALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYN------QGEIRKKELLQS 95
+ L + AHPDD +F T+ A +++ + G +R++E +
Sbjct: 2 KILALGAHPDDIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAA 61
Query: 96 CAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHS 155
+LG P + +FPD + + I DLV+T H+
Sbjct: 62 AGLLGAAPRFL------DFPDG--ELVADAALIGALKTLIAGTGPDLVITHAPN--DYHA 111
Query: 156 NHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKE 215
+H AL +VR S VL + + T SP + S
Sbjct: 112 DHRALSDSVRIAASFA-----VPVLHADT------------MGGTGFSPTHYVD--ISAH 152
Query: 216 VAQAKKAMSCHRSQ 229
KA+ H+SQ
Sbjct: 153 AEIKAKAIRMHQSQ 166
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 800
Score = 116 bits (289), Expect = 4e-25
Identities = 34/185 (18%), Positives = 58/185 (30%), Gaps = 40/185 (21%)
Query: 29 RSPEQAGLPGAGS--------------RALVVIAHPDDEAMFFAPTILGL-ARLKQQVSL 73
R + + + AHPDDE + L + +
Sbjct: 5 RERIERQMADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYFRTELGMRTII 61
Query: 74 LCFSSGNYYN----------QGEIRKKELLQSCAVLGIPPSRVM-----IIDKREFP--- 115
C + G G IR +EL ++ V+ S + II F
Sbjct: 62 ACSTRGEGGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDG 121
Query: 116 DDPEVQWDTEHVASTILQHIHANATDLVV-TF-DAEGVSGHSNHIALYKAVRALHSGGKL 173
D +W + +++ D+V+ TF D G GH H A+ +A ++ +
Sbjct: 122 DQTFGRWGQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRAAKSAITLAAD 179
Query: 174 PEGCS 178
P
Sbjct: 180 PSAYP 184
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 815
Score = 116 bits (289), Expect = 4e-25
Identities = 34/185 (18%), Positives = 58/185 (30%), Gaps = 40/185 (21%)
Query: 29 RSPEQAGLPGAGS--------------RALVVIAHPDDEAMFFAPTILGL-ARLKQQVSL 73
R + + + AHPDDE + L + +
Sbjct: 20 RERIERQMADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYFRTELGMRTII 76
Query: 74 LCFSSGNYYN----------QGEIRKKELLQSCAVLGIPPSRVM-----IIDKREFP--- 115
C + G G IR +EL ++ V+ S + II F
Sbjct: 77 ACSTRGEGGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDG 136
Query: 116 DDPEVQWDTEHVASTILQHIHANATDLVV-TF-DAEGVSGHSNHIALYKAVRALHSGGKL 173
D +W + +++ D+V+ TF D G GH H A+ +A ++ +
Sbjct: 137 DQTFGRWGQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRAAKSAITLAAD 194
Query: 174 PEGCS 178
P
Sbjct: 195 PSAYP 199
>ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80196.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
Length = 601
Score = 112 bits (279), Expect = 7e-24
Identities = 24/116 (20%), Positives = 49/116 (41%), Gaps = 4/116 (3%)
Query: 43 ALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIP 102
+V++ H DDE TI L V ++ ++G++ G R KE +++ +LG+
Sbjct: 53 IMVIVPHQDDEINLAGATIKRLIDNGNNVKVVFATNGDFKGLGTKRIKEAVEAVRILGVN 112
Query: 103 PSRVMIIDKREFPDDPEVQW---DTEHVASTILQHIHANATDLVVTFDAEGVSGHS 155
V+ + + ++ + D + S+ + TD + F +SG
Sbjct: 113 SENVIFLGYGDRWEETKEHIYNSDDNKIISSYIGKNETYGTDKYLDF-RSSISGEP 167
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
Length = 252
Score = 109 bits (272), Expect = 4e-23
Identities = 24/143 (16%), Positives = 46/143 (31%), Gaps = 20/143 (13%)
Query: 42 RALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSG---------NYYNQGEIRKKEL 92
R + V AHPDDE + T+ AR +V L+ + G + IR++
Sbjct: 2 RIMAVFAHPDDE-IGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHG 60
Query: 93 LQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVS 152
+G D + + + + V+T+ +
Sbjct: 61 AWVADKIGAK---YHFFDMGDSRMTGGRDEALQ-----LARLYATFRPHAVITWSDD--H 110
Query: 153 GHSNHIALYKAVRALHSGGKLPE 175
H +H K + ++P+
Sbjct: 111 PHPDHRMTAKIAFDAVTLARIPK 133
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
Length = 232
Score = 95.7 bits (236), Expect = 8e-19
Identities = 44/197 (22%), Positives = 73/197 (36%), Gaps = 24/197 (12%)
Query: 45 VVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYN----------QGEIRKKELLQ 94
VV HPDDEA+ + LA ++V L + G + + +R E +
Sbjct: 15 VVAPHPDDEALGCGALLAALAEAGREVWALLLTDGGFSHPASKAYPRPRLSAVRLAEWRE 74
Query: 95 SCAVLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGH 154
+VLG+PP+R + + PD + T + + Q V+ H
Sbjct: 75 GLSVLGVPPARTVAL---GLPDGALGEHLTAAARAQVRQAFAQARPGTVLL--PWERDPH 129
Query: 155 SNHIALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSK 214
+H A + +R G LP L L+ L + D P + V +
Sbjct: 130 PDHRAAWHLLR-----GVLPSDT--LALEYAVWLPERGADADWPRPDEVEELTFAVGDWR 182
Query: 215 EVAQAKKAMSCHRSQLL 231
+A++ HR+QL
Sbjct: 183 --DAKARAIASHRTQLG 197
CPU time: 72.18 user secs. 2.34 sys. secs 74.52 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.316 0.172 0.517
Gapped
Lambda K H
0.270 0.0603 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184375191
Number of Sequences: 887402
Number of extensions: 9242920
Number of successful extensions: 34368
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 34083
Number of HSP's gapped (non-prelim): 131
length of query: 252
length of database: 277,845,442
effective HSP length: 54
effective length of query: 198
effective length of database: 229,925,734
effective search space: 45525295332
effective search space used: 45525295332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.2 bits)
S2: 72 (32.1 bits)
