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GPI Anchor Biosynthesis Report: PIGL_HUMAN (PIG-L family, Homo sapiens)




BLASTP 2.1.1 [Aug-8-2000]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
         (252 letters)

Database: nr
           887,402 sequences; 277,845,442 total letters

Searching..................................................

Converged !!!


Results of PSI-Blast iteration 3

Distribution of 50 Blast Hits on the Query Sequence


Sequences with E-value BETTER than threshold (0.002)

sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-... 333 2e-90
ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class ... 321 9e-87
gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melano... 253 3e-66
sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidyli... 250 2e-65
ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylino... 238 7e-62
ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thali... 200 2e-50
ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus ho... 191 8e-48
gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furio... 189 3e-47
ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus ab... 186 3e-46
ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Dei... 184 2e-45
ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Sta... 175 8e-43
ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [B... 168 6e-41
ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar t... 166 5e-40
ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical p... 163 4e-39
ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Dei... 158 1e-37
ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycoba... 149 7e-35
emb|CAC18708.2| (AL451182) conserved hypothetical protein [Strep... 147 2e-34
ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium... 147 2e-34
ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycob... 146 4e-34
ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [... 145 5e-34
ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Myc... 142 5e-33
gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolat... 142 6e-33
ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [... 141 1e-32
ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Myc... 139 4e-32
emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces co... 139 6e-32
ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefacie... 138 1e-31
ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clo... 137 2e-31
ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans... 136 3e-31
ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [B... 136 5e-31
emb|CAC16965.1| (AL450350) conserved hypothetical protein [Strep... 136 5e-31
ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycoba... 133 4e-30
emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Stre... 131 8e-30
emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophi... 131 1e-29
ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sul... 131 2e-29
ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agr... 128 1e-28
ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thali... 126 3e-28
gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabi... 125 9e-28
gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum] 122 5e-27
gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum] 122 5e-27
sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA ... 121 2e-26
pir||S44952 lmbE protein - Streptomyces lincolnensis >gi|2127551... 119 7e-26
emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces co... 116 3e-25
ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sin... 113 3e-24
ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus r... 111 1e-23
ref|NP_437291.1| (NC_003078) conserved hypothetical protein, pos... 110 4e-23
emb|CAC04222.1| (AL391515) conserved hypothetical protein [Strep... 103 3e-21
ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium... 103 4e-21
ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus r... 100 3e-20
ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Dei... 86 4e-16
pir||D69906 hypothetical protein yojG - Bacillus subtilis >gi|26... 84 3e-15
Alignments
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (Phosphatidylinositol-glycan biosynthesis, class L
           protein) (PIG-L)
 dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
          Length = 252

 Score =  333 bits (846), Expect = 2e-90
 Identities = 195/252 (77%), Positives = 213/252 (84%)

Query: 1   MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
           ME + LLCVA+AVL WGFL VW+S+ERM+S EQ G  GA SR L+VIAHPDDEAMFFAPT
Sbjct: 1   MEVVGLLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPT 60

Query: 61  VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
           +LGLARL+  V LLCFS+GNYYNQGE RKKELLQSC VLGIP S VMIID R+FPDDP +
Sbjct: 61  ILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEV 120

Query: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
           QWDTEHVA  +LQHI  N  +LVVTFDA GVSGHSNHIALY AVRALHS GKLP+GCSVL
Sbjct: 121 QWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL 180

Query: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
           TLQSVNVLRKY+ LLDLP +LL  Q VLFVL SKEVAQAKKAMSCHRSQLLWFR LY +F
Sbjct: 181 TLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVF 240

Query: 241 SRYMRINSLSFL 252
           SRYM +NSL  L
Sbjct: 241 SRYMSVNSLQLL 252
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
 sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (Phosphatidylinositol-glycan biosynthesis, class L
           protein) (PIG-L)
 dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
          Length = 252

 Score =  321 bits (815), Expect = 9e-87
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
           MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
Sbjct: 1   MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60

Query: 61  VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
           VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
Sbjct: 61  VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120

Query: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
           QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
Sbjct: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180

Query: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
           TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
Sbjct: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240

Query: 241 SRYMRINSLSFL 252
           SRYMRINSLSFL
Sbjct: 241 SRYMRINSLSFL 252
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
          Length = 390

 Score =  253 bits (641), Expect = 3e-66
 Identities = 94/241 (39%), Positives = 131/241 (54%), Gaps = 27/241 (11%)

Query: 35  GRLGAESRTLLVIAHPDDEAMFFAPTVLGLAR-LRHWVYLLCFSAGN------------- 80
            +     R LL+ AHPDDE MFF P +  L +     VY+LC S G              
Sbjct: 134 PKTACMERVLLITAHPDDECMFFGPLIYSLTQRQGCQVYILCLSNGETTSSDIIPKPPID 193

Query: 81  --------YYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLL 132
                   + ++ + R++EL +SC  LGIP S++++++  + PDDP + W  + VA ++L
Sbjct: 194 LEALNESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVASLIL 253

Query: 133 QHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK----GCSVLTLQSVNVL 188
             IE   I  + TFD  GVS H NH A+Y A  +L     LPK     C   TL S+NV+
Sbjct: 254 HTIESLDIQAIFTFDRDGVSSHPNHCAVYYAAASLCLANLLPKGEEAYCKFYTLDSINVV 313

Query: 189 RKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIFSRYMRINS 248
           RKY+S+LDL  +   +     +LN KE A  + AM  H+SQ+ WFR LYI FSRYM INS
Sbjct: 314 RKYLSILDLLCTCFMSTH-WCILNWKEAAIVRSAMMEHQSQMRWFRWLYIYFSRYMFINS 372

Query: 249 L 249
           +
Sbjct: 373 M 373
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
 emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
           deacetylase [Schizosaccharomyces pombe]
          Length = 248

 Score =  250 bits (634), Expect = 2e-65
 Identities = 89/251 (35%), Positives = 129/251 (50%), Gaps = 21/251 (8%)

Query: 6   LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65
           LL  A+AVL+        ++E    +E   +L  ES  L V AHPDDE+MFF PT+  L 
Sbjct: 8   LLVTAIAVLS-------TANESSSGQE---KLAVES-ILFVFAHPDDESMFFGPTIDYLG 56

Query: 66  RLRH-WVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDT 124
                 V++LC S GN    G  R+KEL+ +     I  ++V ++ +    D    +WD 
Sbjct: 57  NQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDP 116

Query: 125 EHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQS 184
             VA+ + Q IE   I  ++TFD  G+SGH NHIA Y     +    K      V  L+S
Sbjct: 117 TDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIV---KATPQVQVFVLES 173

Query: 185 VNVLRKYISLLDLPLSLLHTQ-----DVLFVLNSKEVAQAKKAM-SCHRSQLLWFRRLYI 238
           VN+ RKYIS LD   +L+ +Q      ++   + K   + + AM   H+SQ++WFR  +I
Sbjct: 174 VNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWI 233

Query: 239 IFSRYMRINSL 249
             S+YM  N L
Sbjct: 234 YLSKYMSNNVL 244
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
           de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
 sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
 pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
           cerevisiae)
 emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
 dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
          Length = 304

 Score =  238 bits (603), Expect = 7e-62
 Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 38/278 (13%)

Query: 7   LCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTV---LG 63
           L + L +L   F     S      +        +    LVIAHPDDE MFF+P +     
Sbjct: 21  LAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSPIISQLNS 80

Query: 64  LARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWD 123
                    ++C S GN    GETR +EL +S  +L +     + +   DF D     WD
Sbjct: 81  YFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL-LHNERAVSVQVMDFQDGMDEIWD 139

Query: 124 TEHVARVLLQHIEVNGI---NLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKG---- 176
            + +   L Q I++       ++VTFD+ GVS H NH + YAAV+ L  +   PK     
Sbjct: 140 IDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNE 199

Query: 177 ----CSVLTLQSV--NVLRKYISLL-------------------DLPLSLLHTQDVLFVL 211
                + L L+S   N++ KY S +                    LP +    +D L ++
Sbjct: 200 QPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLM 259

Query: 212 NS--KEVAQAKKAMSCHRSQLLWFRRLYIIFSRYMRIN 247
           N+  + V      ++ H SQ++WFR  + IFSR++ +N
Sbjct: 260 NTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVN 297
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
          Length = 223

 Score =  200 bits (506), Expect = 2e-50
 Identities = 60/202 (29%), Positives = 98/202 (47%), Gaps = 27/202 (13%)

Query: 52  DEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDN 111
           D+  FF+PT+         +++LCFS GN    G  R +EL ++C VL +     +  D 
Sbjct: 34  DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDK 88

Query: 112 RDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEG 171
               D+     + EH                ++TFD  GV GH NH  ++  +       
Sbjct: 89  EGICDNDSCHCNEEH----------------IITFDNYGVWGHCNHRDVHPPIDCKIDSA 132

Query: 172 KLPKGCSVLTLQSVNVLRKYISLLDLPLSLL----HTQDVLFVLNSKEVAQAKKAMSCHR 227
           K   G   +   S+N+ RKY   +D+ LS+L    H   V+ +  +K+  ++ KAM+ H 
Sbjct: 133 KRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIII--NKQPWKSFKAMAQHL 190

Query: 228 SQLLWFRRLYIIFSRYMRINSL 249
           SQ +WFR+L+++FS Y  +N+L
Sbjct: 191 SQWVWFRKLFVLFSSYTYVNTL 212
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
 pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
 dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 272

 Score =  191 bits (483), Expect = 8e-48
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 26/208 (12%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
           + L +  HPDD  +    T+  L+ +   V  +C + G                 R+KE 
Sbjct: 37  KVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSGHELAAIRRKEE 96

Query: 93  LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG-GV 151
            +S  +LG+     +   + + P        +  V + L + +     + V   D     
Sbjct: 97  EESARLLGVKKIYWLNYRDTELP-------YSREVRKDLTKILRKEQPDGVFAPDPWLPY 149

Query: 152 SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVL 211
             H +H           +  +LP   +      +N    Y S   + L   H     +++
Sbjct: 150 ESHPDHRRTGFLAIESVAFSQLPNFSNTDLDIGLN---PYNSGSFIALYYTHKP--NYIV 204

Query: 212 NSKEVAQAK-KAMSCHRSQL---LWFRR 235
           +  ++ + K KA+  HRSQ    +W + 
Sbjct: 205 DITDLMELKLKAIRVHRSQFPDDIWEKW 232
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
          Length = 267

 Score =  189 bits (478), Expect = 3e-47
 Identities = 37/208 (17%), Positives = 76/208 (35%), Gaps = 27/208 (12%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
           + + +  HPDD A+    T+  L+     V  +C + G                 R++E 
Sbjct: 33  KVICIEPHPDDCAIGMGGTIKKLSDEGVEVIYICMTDGYMGTTDEKLSGHELALIRRREE 92

Query: 93  LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG-GV 151
            +S  +LG+     +   + + P        +  V + L++ I     + V   D     
Sbjct: 93  EESAKLLGVRKIYWLNYRDTELP-------YSREVRKDLVKIIRKEKPDGVFAPDPWLPY 145

Query: 152 SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVL 211
             H +H           +  +LP   +      +++  K  S+  + L   H     +++
Sbjct: 146 ESHPDHRRTGFLAIESVAFSQLPNFSN----IDIDIGLKPHSVSFIALYYTHKP--NYIV 199

Query: 212 NSKEVAQAK-KAMSCHRSQL---LWFRR 235
           +  ++ + K KA+  HRSQ    +W   
Sbjct: 200 DITDLMELKLKAIRAHRSQFTDDIWETW 227
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
 pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
 emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
          Length = 267

 Score =  186 bits (470), Expect = 3e-46
 Identities = 36/208 (17%), Positives = 69/208 (32%), Gaps = 27/208 (12%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
           + L +  HPDD  +    T+  L      V   C + G                 R++E 
Sbjct: 33  KVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREE 92

Query: 93  LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG-GV 151
            +S  +LG+     +   + + P        +  V + L++ I     + V   D     
Sbjct: 93  EESSKLLGVKKIYWLNYRDTELP-------YSREVRKDLVRIIRKEKPDGVFLPDPWLPY 145

Query: 152 SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVL 211
             H +H           +   LP   +V     +      +S + L  +        + +
Sbjct: 146 EAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGL--GPHQVSFIALYYT----NKPNYFV 199

Query: 212 NSKEVAQAK-KAMSCHRSQL---LWFRR 235
           +  +V + K KA+  H+SQ    +W   
Sbjct: 200 DITDVMELKLKAIRTHKSQFPDDVWEVW 227
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
           radiodurans]
 pir||G75562 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 237

 Score =  184 bits (463), Expect = 2e-45
 Identities = 49/220 (22%), Positives = 79/220 (35%), Gaps = 32/220 (14%)

Query: 30  SREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY------- 82
                   G   + LL++ HPDDE    + T++          L+  + G          
Sbjct: 2   LPTMTSETGKGLKLLLIVPHPDDEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCD 61

Query: 83  ---NQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNG 139
                   R  EL    +V+G+  +   + +   FPD     +  E +     + +E   
Sbjct: 62  GPEELARMRAVELAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLR 121

Query: 140 INLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYIS------ 193
              V+TF   G +GH +H+  + AV+A             L   S  VL  Y S      
Sbjct: 122 PETVLTFPPNGSNGHPDHMTTHRAVKAAWD---------RLPAGSRPVLWYYASETPPEN 172

Query: 194 --LLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLL 231
             L    L     +DV  ++  K      +A++CHRSQ L
Sbjct: 173 EELRAAWLPPTVKRDVSALVTRK-----LQAIACHRSQAL 207
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus Mu50]
 ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus N315]
 dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus N315]
 dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus Mu50]
          Length = 221

 Score =  175 bits (440), Expect = 8e-43
 Identities = 44/209 (21%), Positives = 73/209 (34%), Gaps = 29/209 (13%)

Query: 37  LGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-NQG---------- 85
           +  E   L++  HPDDE    A T+    +    V   C + G    N G          
Sbjct: 1   MTDERHVLVIFPHPDDETFSSAGTLASYIQKGIPVTYACLTLGQMGRNLGNPPFATRESL 60

Query: 86  -ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVV 144
              R++EL ++C V+GI       +      D        EH+  ++   I+    +L++
Sbjct: 61  PSIRERELEEACKVIGIT-----DLRKMGLRDKTVEFEPYEHIDGMIKSLIDDTNPSLII 115

Query: 145 TFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHT 204
           +F   G + H +H A   AV          +    +  +    L       D   +L   
Sbjct: 116 SFYP-GYAVHPDHEATADAV---------IRTVERMPKEERPRLTLVAFSNDATEALGEP 165

Query: 205 QDVLFVLNSKEVAQAKKAMSCHRSQLLWF 233
                + + KE+    KA   H SQ   F
Sbjct: 166 DIQNDITDFKELKI--KAFEAHASQTGPF 192
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
 dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
          Length = 227

 Score =  168 bits (424), Expect = 6e-41
 Identities = 48/209 (22%), Positives = 79/209 (36%), Gaps = 37/209 (17%)

Query: 40  ESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-NQG-----------ET 87
           E   L++  HPDDEA   + T+    +    V   C + G    N G           + 
Sbjct: 4   ERHVLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESLPDI 63

Query: 88  RKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFD 147
           RKKEL++S + +GI    ++   ++          D   +  ++   +     +L++TF 
Sbjct: 64  RKKELIKSAEAMGIEDLRMLGYRDKTI-----EFEDETKLTDMVSDLMAELNPSLIITFY 118

Query: 148 AGGVSGHSNHIALYAAVRALHS---EGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHT 204
             G S H +H A   AV        +   PK                ++  +     L  
Sbjct: 119 P-GYSVHPDHEATGRAVVRAVRRLEKSMRPK-------------LYGVAFSNGHQEELGD 164

Query: 205 QDVLFVLNSKEVAQAKK-AMSCHRSQLLW 232
            D+LF  +   VA+ KK A+  H SQ  W
Sbjct: 165 PDILF--DISPVAEQKKAAIRAHISQTAW 191
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
           proteins [Bacillus subtilis]
 sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
 pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
 gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
 gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
 emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
           [Bacillus subtilis]
          Length = 224

 Score =  166 bits (417), Expect = 5e-40
 Identities = 33/195 (16%), Positives = 71/195 (35%), Gaps = 18/195 (9%)

Query: 43  TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGET--RKKELLQSCDVLG 100
            L   AH DD  +    T+    +    V +   +     + G    RK+E  ++  +LG
Sbjct: 6   VLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTEAELSSNGTVSLRKEEAAEAARILG 65

Query: 101 IPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIAL 160
                 + + +R           ++   R ++  I +     V  F       H +H   
Sbjct: 66  ADKRIQLTLPDRGL-------IMSDQAIRSIVTVIRICRPKAV--FMPYKKDRHPDHGNA 116

Query: 161 YAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQD-VLFVLNSKEVAQA 219
            A V        + K     +L +  V + Y  ++    +  H  D V+ + ++ E    
Sbjct: 117 AALVEEAIFSAGIHKYKDEKSLPAHKVSKVYYYMI----NGFHQPDFVIDISDTIEAK-- 170

Query: 220 KKAMSCHRSQLLWFR 234
           K++++ ++SQ +  +
Sbjct: 171 KQSLNAYKSQFIPSK 185
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
           tokodaii]
 dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
           tokodaii]
          Length = 221

 Score =  163 bits (409), Expect = 4e-39
 Identities = 48/209 (22%), Positives = 85/209 (39%), Gaps = 31/209 (14%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
           R L +  HPDDE      T+  LA   H +Y++  + G+  +           E R+KE 
Sbjct: 2   RILFISPHPDDECDNAGGTLAKLA-KSHEIYIVYMTDGSAGSPNPEERGEKLAEIRRKEA 60

Query: 93  LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVS 152
           L+   VLGI   +   ++  D      ++  +E VA++L +       N+++      + 
Sbjct: 61  LEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREI----KPNIII--YPSLLD 114

Query: 153 GHSNHIALYA----AVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVL 208
           GH++H +       A+R +          + L + S +V        D    LL      
Sbjct: 115 GHNDHWSGGYITRIAIRKVGITVNELSYLNWLPIPSKSVF-------DAIKYLLIPFHRK 167

Query: 209 FVLNSKEVAQAK-KAMSCHRSQLLWFRRL 236
             ++ +E  + K +AM  H SQ   F+ L
Sbjct: 168 IKVDIREYKRIKLEAMKKHESQ---FKYL 193
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
           radiodurans]
 pir||F75517 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 281

 Score =  158 bits (397), Expect = 1e-37
 Identities = 56/227 (24%), Positives = 85/227 (36%), Gaps = 28/227 (12%)

Query: 32  EQGGRLGAESR-TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY--------- 81
                  A     L++ AHPDDEA     T+   AR    V L C + G           
Sbjct: 1   MTSSSTPAPRATLLVIFAHPDDEAFSVGGTLTHYARQGVRVVLACATRGEAGKITVPGMT 60

Query: 82  -YNQGETRKKELLQSCDVLGIPLSSVMIIDNRD-----FPDDPGMQWDTEHVAR--VLLQ 133
             + G  R++EL ++C  L I     +   +         DDP    +   +     L  
Sbjct: 61  VDDLGAQREQELREACRALEIEPPVFLDYHDSGRYERTRHDDPTALMNVNPLDAEVKLRA 120

Query: 134 HIEVNGINLVVTFDAGGVSGHSNHIALYAA-VRALHSEGKLPKGCSV-------LTLQSV 185
            IE     ++VTFD  G  GH +H+ ++ A V A  S G LP G              + 
Sbjct: 121 LIEDVQPQVIVTFDPHGAYGHVDHLQMHRATVAAFFSTGHLPSGGPQRLYYTAMTHQAAA 180

Query: 186 NVLRKYISLLDLPLSLLHTQDVLFV-LNSKEVAQAKK-AMSCHRSQL 230
            + R        PL    +   L V ++    A+ KK A++ H +Q+
Sbjct: 181 QISRLGHDQSLDPLVYGVSDSTLAVTMDVGAYAENKKAALAAHGTQM 227
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
           H37Rv]
 ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
 pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
           H37Rv]
 gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
          Length = 288

 Score =  149 bits (373), Expect = 7e-35
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 22/157 (14%)

Query: 39  AESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN--------------Q 84
           +E R + V AHPDDE+   A T+   A   H V ++  + G                   
Sbjct: 2   SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRI 61

Query: 85  GETRKKELLQSCDVLGIPLSSVMIIDN--------RDFPDDPGMQWDTEHVARVLLQHIE 136
            E R+ E+ ++ ++LG+  + +  +D+           PDD   +   E     L++ + 
Sbjct: 62  AEIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVR 121

Query: 137 VNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKL 173
               +++ T+D  G   H +HI  +    A +     
Sbjct: 122 EFRPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGD 158
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
          Length = 293

 Score =  147 bits (369), Expect = 2e-34
 Identities = 31/160 (19%), Positives = 58/160 (35%), Gaps = 23/160 (14%)

Query: 37  LGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-------------- 82
           +  + R + V AHPDDE+   A T+         V ++  + G                 
Sbjct: 1   MTDQLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIE 60

Query: 83  -NQGETRKKELLQSCDVLGIPLSSVMIIDN--------RDFPDDPGMQWDTEHVARVLLQ 133
            N  E R+KE+ ++ ++LG+    +  +D+           P+      D +  A  L++
Sbjct: 61  ENIHEVRRKEMDEAREILGVGQEWLGFVDSGLPEGDPLPPLPEGCFALEDVDKAAGELVR 120

Query: 134 HIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKL 173
            I      ++ T+D  G   H +HI  +            
Sbjct: 121 KIRSFRPQVITTYDENGGYPHPDHIMTHKITMVAFEGAAD 160
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
           CDC1551]
 gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 223

 Score =  147 bits (369), Expect = 2e-34
 Identities = 48/201 (23%), Positives = 78/201 (37%), Gaps = 18/201 (8%)

Query: 36  RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY-------YNQGETR 88
           RL      L V AHPDDE+      +         +  LCF+ G          N GE R
Sbjct: 6   RLPCAHEVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVR 65

Query: 89  KKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA 148
           ++EL  +  VLG+    ++       PD+   Q     + + ++  +   G +L++ FD 
Sbjct: 66  REELAAAAQVLGVDHVQLLAY-----PDNGLAQIPLNELTQRVVDALA--GADLLLVFDD 118

Query: 149 GGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVL 208
            GV+GH +H     A  A  S   +P     L     + L    S         H    L
Sbjct: 119 NGVTGHPDHRRATEAALAAASTPGIPVLAWALPQPIADRLNAEFSASFGGRGHGH----L 174

Query: 209 FVLNSKEVAQAKKAMSCHRSQ 229
            ++   + ++   A+ CH +Q
Sbjct: 175 DIMIEVDRSRQLAAIGCHFTQ 195
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
           tuberculosis H37Rv]
 pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
           H37Rv]
          Length = 223

 Score =  146 bits (366), Expect = 4e-34
 Identities = 48/201 (23%), Positives = 78/201 (37%), Gaps = 18/201 (8%)

Query: 36  RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY-------YNQGETR 88
           RL      L V AHPDDE+      +         +  LCF+ G          N GE R
Sbjct: 6   RLPCAHEVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVR 65

Query: 89  KKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA 148
           ++EL  +  VLG+    ++       PD+   Q     + + ++  +   G +L++ FD 
Sbjct: 66  REELAAAAQVLGVDHVQLLAY-----PDNGLAQIPLNELTQRVVDALA--GADLLLVFDD 118

Query: 149 GGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVL 208
            GV+GH +H     A  A  S   +P     L     + L    S         H    L
Sbjct: 119 NGVTGHPDHRRATEAALAAASTPSIPVLAWALPQPIADRLNAEFSASFGGRGHGH----L 174

Query: 209 FVLNSKEVAQAKKAMSCHRSQ 229
            ++   + ++   A+ CH +Q
Sbjct: 175 DIMIEVDRSRQLAAIGCHFTQ 195
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
          Length = 221

 Score =  145 bits (365), Expect = 5e-34
 Identities = 56/207 (27%), Positives = 87/207 (41%), Gaps = 41/207 (19%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-NQGE-----------TRK 89
             L+++ HPDDE+   A  +    +    V   C + G    N G+            RK
Sbjct: 4   HVLVILPHPDDESYGVAGLIALNRKKDIPVTYACATLGEMGRNMGDPFFANRETLPLLRK 63

Query: 90  KELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA- 148
           +EL+ +C  + I    ++ +      D      D E++A ++ + I+    +L+VTF   
Sbjct: 64  QELINACKEMDINDLRMLGLR-----DKTLEFEDDEYLADIMEEIIDDVKPSLIVTFYPG 118

Query: 149 GGVSGHSNHIALYAAV-RALHSEGK--LPKG-CSVLTLQSVNVLRKYISLLDLPLSLLHT 204
            GV  H +H A   AV RAL+ + K   P+  C  +T     V              L  
Sbjct: 119 HGV--HPDHDACGEAVIRALYRKKKEDRPRTICMAITRNREEV--------------LGE 162

Query: 205 QDVLFVLNSKEVAQAK-KAMSCHRSQL 230
            DV  VL+ KEVA  K  A+  HR+Q 
Sbjct: 163 ADV--VLDIKEVADIKMNALRAHRTQT 187
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
 emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
          Length = 308

 Score =  142 bits (357), Expect = 5e-33
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 26/148 (17%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN----------------YYNQG 85
           R L V AHPDDE++    T+         V ++  + G                     G
Sbjct: 6   RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65

Query: 86  ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDP----------GMQWDTEHVARVLLQHI 135
             R  EL ++   LG+     +    R                 +  D       L+  I
Sbjct: 66  GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125

Query: 136 EVNGINLVVTFDAGGVSGHSNHIALYAA 163
                ++VVT+D  G  GH +H+  +  
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTHFI 153
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
           mediterranei]
          Length = 255

 Score =  142 bits (356), Expect = 6e-33
 Identities = 35/208 (16%), Positives = 67/208 (31%), Gaps = 24/208 (11%)

Query: 46  VIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-----------NQGETRKKELLQ 94
             AHP+D+       +       H V L+  + G                G+ R  E   
Sbjct: 7   FHAHPNDDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVEARA 66

Query: 95  SCDVLGIPLSSVMIIDNRDFP-----DDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG 149
           + DVLG+     +   +                D E  AR L   +     +++  +D  
Sbjct: 67  AADVLGVDRLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTVYDEK 126

Query: 150 GVSGHSNHIALY----AAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSL---L 202
           G  G  +HI ++     A     +        +   +++   +    + +DLP       
Sbjct: 127 GTYGDPDHIQVHRVGTRAAELAGTAKVFQSTINREHIKANQRVLAEQAGVDLPAGPDFGT 186

Query: 203 HTQDVLFVLN-SKEVAQAKKAMSCHRSQ 229
              ++   ++ S      +KA+  H SQ
Sbjct: 187 PEAELTCRVDVSAYTEYKRKALLAHASQ 214
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
           radiodurans]
          Length = 239

 Score =  141 bits (354), Expect = 1e-32
 Identities = 38/212 (17%), Positives = 69/212 (31%), Gaps = 35/212 (16%)

Query: 29  KSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGE-- 86
             +   G        L +  HPDD  +    T++ LA+    V +L  + G    QG   
Sbjct: 4   TLQTVYGE-AQPLDWLCLAPHPDDAEIGAGGTLIRLAQAGRAVGILELTRGEKGTQGTPA 62

Query: 87  TRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTF 146
            R+ E + +  ++ +     + + + +  D P         A  L   +      ++V  
Sbjct: 63  ERQAECVAAARLMDLSWRGQLGLPDGELADTPP-------FAHALAAALRTVRPRVLVV- 114

Query: 147 DAGGVSGHSNH--------IALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLP 198
                  H +H         A++ A       G  P     + L        Y    D+ 
Sbjct: 115 -PHWHDRHPDHFGTYHLTKRAIHLAALKKADLGGDPWRVQRVLL--------YQGNSDIS 165

Query: 199 LSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQL 230
            ++L   D+  V+   E      A+  H SQ 
Sbjct: 166 ANVLV--DIGSVMTEWEA-----AIRAHTSQF 190
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
 gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
 emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
          Length = 290

 Score =  139 bits (349), Expect = 4e-32
 Identities = 48/241 (19%), Positives = 83/241 (33%), Gaps = 50/241 (20%)

Query: 39  AESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN--------------YYNQ 84
           +E R + V AHPDDE+   A T+   A   H V ++  + G               + + 
Sbjct: 2   SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGHI 61

Query: 85  GETRKKELLQSCDVLGIPLSSVMIIDN--------RDFPDDPGMQWDTEHVARVLLQHIE 136
            E R+ E+ ++ ++LG+  + +  ID+           PDD       E     L++ + 
Sbjct: 62  AEIRRDEMAKAAEILGVEHTWLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVVR 121

Query: 137 VNGINLVVTFDAGGVSGHSNHIALYA----AVRALHS-----EGKLPKGCSVLT-----L 182
               +++ T+D  G   H +HI  +     A  A        +   P   S L      L
Sbjct: 122 KFRPHVLTTYDENGGYPHPDHIRCHQVSVDAYEAACDYRRFPDAGKPWTVSKLYYNHGFL 181

Query: 183 QSVNVLRK-------YISLLDLPL---SLLHTQDVLFVLNSKEVAQAK----KAMSCHRS 228
           ++   L              D  L   +  H      V    E +        A+  H +
Sbjct: 182 RARMQLLHDEFAKHGQAGPFDKWLAQSNPAHDPFESRVTTRVECSAYFSQRDDALRAHAT 241

Query: 229 Q 229
           Q
Sbjct: 242 Q 242
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 295

 Score =  139 bits (348), Expect = 6e-32
 Identities = 48/207 (23%), Positives = 71/207 (34%), Gaps = 35/207 (16%)

Query: 40  ESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN-------------QGE 86
             R LLV AHPDDE++    T+   A     V L+  + G                  G 
Sbjct: 6   GRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSGAALGG 65

Query: 87  TRKKELLQSCDVLGIPLSSVMI----IDNRDF-----PDDPGMQWD--TEHVARVLLQHI 135
            R+ EL  +   LG+    ++       +         DDPG  W    +  A +L+  I
Sbjct: 66  HRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAALLVDVI 125

Query: 136 EVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSV--LTLQSVNVLRKYIS 193
                 ++VT+D  G  GH +HI  +              GC V  +    V   R   +
Sbjct: 126 REVRPQVLVTYDPNGGYGHPDHIQAHRIAMRAAELAAE-AGCPVAKVYWNRVPRSRVEDA 184

Query: 194 LL----DLPLSLLHTQ----DVLFVLN 212
                 DLP           DV  V++
Sbjct: 185 FARLRDDLPGLPFEKAAGVEDVPGVVD 211
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
           tumefaciens str. C58 (Cereon)]
 gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
          Length = 815

 Score =  138 bits (345), Expect = 1e-31
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 36/192 (18%)

Query: 15  AWGFLWVWDSSERMKSREQGGRLGAESR----------TLLVIAHPDDEAMFFAPTVLGL 64
            W    + +  ER++ +     L    R           +   AHPDDE       +   
Sbjct: 10  YWRRPPMLNPRERIERQMADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYF 66

Query: 65  -ARLRHWVYLLCFSAGNYYN----------QGETRKKELLQSCDVLGIP-----LSSVMI 108
              L     + C + G               G  R +EL ++  V+             I
Sbjct: 67  RTELGMRTIIACSTRGEGGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADI 126

Query: 109 IDNRDFP---DDPGMQWDTEHVARVLLQHIEVNGINLVV-TF-DAGGVSGHSNHIALYAA 163
           I +  F    D    +W    +   L++       ++V+ TF D  G  GH  H A+  A
Sbjct: 127 IHDFGFSKDGDQTFGRWGQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRA 184

Query: 164 VRALHSEGKLPK 175
            ++  +    P 
Sbjct: 185 AKSAITLAADPS 196
>ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clostridium
           perfringens]
 dbj|BAB80196.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
          Length = 601

 Score =  137 bits (343), Expect = 2e-31
 Identities = 24/153 (15%), Positives = 57/153 (36%), Gaps = 6/153 (3%)

Query: 6   LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65
           + C+ + +  +      D      +      +      ++++ H DDE      T+  L 
Sbjct: 18  IFCIVMTL--FISTANMDYGSNFSNSIDYSEMWTNKEIMVIVPHQDDEINLAGATIKRLI 75

Query: 66  RLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQW--- 122
              + V ++  + G++   G  R KE +++  +LG+   +V+ +   D  ++        
Sbjct: 76  DNGNNVKVVFATNGDFKGLGTKRIKEAVEAVRILGVNSENVIFLGYGDRWEETKEHIYNS 135

Query: 123 DTEHVARVLLQHIEVNGINLVVTFDAGGVSGHS 155
           D   +    +   E  G +  + F    +SG  
Sbjct: 136 DDNKIISSYIGKNETYGTDKYLDF-RSSISGEP 167
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
 pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
 emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
          Length = 151

 Score =  136 bits (342), Expect = 3e-31
 Identities = 51/123 (41%), Positives = 79/123 (63%), Gaps = 2/123 (1%)

Query: 37  LGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSC 96
           L ++SR LL+IAHPDDE MFF+PT+  L +  H V++LC S GN+   G+ R +EL ++ 
Sbjct: 28  LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKIRARELSRAA 87

Query: 97  DVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSN 156
             LGI  S V+ +D  +F D     W+   + +++++H+EV   + V++FD+ GVSGH N
Sbjct: 88  SKLGISASDVICLDYDEFADGD--TWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHN 145

Query: 157 HIA 159
           H  
Sbjct: 146 HAR 148
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
 dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
          Length = 231

 Score =  136 bits (340), Expect = 5e-31
 Identities = 38/192 (19%), Positives = 64/192 (32%), Gaps = 17/192 (8%)

Query: 41  SRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGET--RKKELLQSCDV 98
              L   AHPDD  +    T+    +  H V +   +     + G    R+KE   +  +
Sbjct: 4   LDILAFGAHPDDVEIGMGATLYHYRQKGHRVGICNLTKAELSSNGTVEQRQKEAADASRI 63

Query: 99  LGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHI 158
           LGI     + + +R    +P  Q         ++  I          F    V  H +H 
Sbjct: 64  LGIDERIQLDLPDRGLR-NPSEQQVRN-----IVSVIRHCQPT--FVFVPYPVDRHPDHG 115

Query: 159 ALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQ 218
                V+      ++    +      V  L  Y+        LL       V +  EV Q
Sbjct: 116 HCAELVKEAVFNARIRNYKAEGGAHHVQDLFYYMINSFERPDLLV-----DVSHCYEVKQ 170

Query: 219 AKKAMSCHRSQL 230
           A  A++ ++SQ 
Sbjct: 171 A--ALNAYKSQF 180
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
          Length = 277

 Score =  136 bits (340), Expect = 5e-31
 Identities = 46/226 (20%), Positives = 77/226 (33%), Gaps = 39/226 (17%)

Query: 43  TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSA------------GNYYN----QGE 86
            + V AHPDDEA      +   A       L+  +             G+  +       
Sbjct: 8   LMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGHDPAAVAL 67

Query: 87  TRKKELLQSCDVLGIPLSSVMIIDNRDF-----PDDPGMQW--DTEHVARVLLQHIEVNG 139
            R++EL +S D+L I     +   +         D PG  W    E  A  L + +    
Sbjct: 68  MRRRELEESRDILKISDLETLDYADSGMMGWPSNDAPGSFWRTPVEEGAARLAELMRHYR 127

Query: 140 INLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLL---- 195
            ++VVT+D  G  GH +HI  +    A      L       T     + R    +     
Sbjct: 128 PDVVVTYDENGFYGHPDHIQAHRITMAALEMTTLTPKVYWTTAPRSMMQRFGEIMREFHP 187

Query: 196 DLPLSL-----------LHTQDVLFVLNSKEVA-QAKKAMSCHRSQ 229
           D+P              L  +++   +++   + Q   A++ H SQ
Sbjct: 188 DMPEPDPAEAAAMAEIGLPDEEITTWVDTTSFSGQKFDALAAHASQ 233
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
           H37Rv]
 ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
           CDC1551]
 pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
           H37Rv]
 gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 303

 Score =  133 bits (332), Expect = 4e-30
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 26/141 (18%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN----------------YYNQG 85
           R L V AHPDDE++    T+         V+++  + G                     G
Sbjct: 6   RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65

Query: 86  ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDP----------GMQWDTEHVARVLLQHI 135
             R  EL  +   LG+     +    R                 +  D       L+  I
Sbjct: 66  GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125

Query: 136 EVNGINLVVTFDAGGVSGHSN 156
                ++VVT+D  G  GH +
Sbjct: 126 RELRPHVVVTYDPNGGYGHPD 146
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
           A3(2)]
          Length = 247

 Score =  131 bits (329), Expect = 8e-30
 Identities = 31/173 (17%), Positives = 53/173 (29%), Gaps = 22/173 (12%)

Query: 28  MKSREQG---GRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-- 82
           M            G   R L V+AHPDD     A  +         V  +  + G     
Sbjct: 1   MTEPTITQLEPMPGDWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGID 60

Query: 83  -----NQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEV 137
                     R++E   S  V+G+     +   +       G+      + R +   I  
Sbjct: 61  TLAPAECAPLREREQRASAAVVGVSEVEFLDHRD-------GVVEYGTALRRDIAAAIRR 113

Query: 138 NGINLVVTF---DAGGV--SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSV 185
           +   LV+T    D  G       +H+A+  A     ++         LT + +
Sbjct: 114 HRPELVITMNHRDTWGGVAWNTPDHVAVGRATLDAAADAGNRWIFPELTDRGL 166
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
          Length = 227

 Score =  131 bits (327), Expect = 1e-29
 Identities = 38/193 (19%), Positives = 62/193 (31%), Gaps = 18/193 (9%)

Query: 40  ESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQG--ETRKKELLQSCD 97
               L+V  HPDD  +    T+           +L  + G   ++G  E R+KE+ ++  
Sbjct: 1   MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASR 60

Query: 98  VLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNH 157
           +LG+     +   +    D P  +         L Q +      +V  F       H +H
Sbjct: 61  ILGLDFRGNLGFPDGGLADVPEQRL-------KLAQALRRLRPRVV--FAPLEADRHPDH 111

Query: 158 IALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVA 217
            A      A      L K         V  L  Y        S L    +   ++  E  
Sbjct: 112 TAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVK--ISAFIDQWEA- 168

Query: 218 QAKKAMSCHRSQL 230
               A+  +RSQ 
Sbjct: 169 ----AVLAYRSQF 177
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
           solfataricus]
 gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 193

 Score =  131 bits (327), Expect = 2e-29
 Identities = 27/143 (18%), Positives = 52/143 (35%), Gaps = 22/143 (15%)

Query: 36  RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY----------NQG 85
           +     R L+V  HPDDE +    T+       + + ++  + G Y              
Sbjct: 3   KSSCMRRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELI 62

Query: 86  ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVT 145
           E R++E L++  +LGI     +  ++    ++         +A  L ++         V 
Sbjct: 63  EIRRQEALRATKILGIDEVKFLNFEDSKVSEEDAE----NALAEFLREND--------VV 110

Query: 146 FDAGGVSGHSNHIALYAAVRALH 168
           F       H +H  +  AV  L+
Sbjct: 111 FSPIPFDNHPDHANIGKAVEKLY 133
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
 gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 800

 Score =  128 bits (320), Expect = 1e-28
 Identities = 35/186 (18%), Positives = 60/186 (31%), Gaps = 36/186 (19%)

Query: 21  VWDSSERMKSREQGGRLGAESR----------TLLVIAHPDDEAMFFAPTVLGL-ARLRH 69
           + +  ER++ +     L    R           +   AHPDDE       +      L  
Sbjct: 1   MLNPRERIERQMADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYFRTELGM 57

Query: 70  WVYLLCFSAGNYYN----------QGETRKKELLQSCDVLGIP-----LSSVMIIDNRDF 114
              + C + G               G  R +EL ++  V+             II +  F
Sbjct: 58  RTIIACSTRGEGGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGF 117

Query: 115 P---DDPGMQWDTEHVARVLLQHIEVNGINLVV-TF-DAGGVSGHSNHIALYAAVRALHS 169
               D    +W    +   L++       ++V+ TF D  G  GH  H A+  A ++  +
Sbjct: 118 SKDGDQTFGRWGQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRAAKSAIT 175

Query: 170 EGKLPK 175
               P 
Sbjct: 176 LAADPS 181
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
 pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
 emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
          Length = 124

 Score =  126 bits (316), Expect = 3e-28
 Identities = 36/112 (32%), Positives = 62/112 (55%)

Query: 56  FFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFP 115
           FF+PT+  LA     +++LC S GN    G  R  EL ++C VL +PL  + I+++ +  
Sbjct: 7   FFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQ 66

Query: 116 DDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRAL 167
           D  G  W  + +  ++ + +  + I+ ++TFD  GVSGH NH  ++  V  +
Sbjct: 67  DGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVLYV 118
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
          Length = 185

 Score =  125 bits (312), Expect = 9e-28
 Identities = 42/156 (26%), Positives = 64/156 (40%), Gaps = 41/156 (26%)

Query: 56  FFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFP 115
           FF+PT+         +++LCFS GN    G  R +EL ++C VL +     +  D     
Sbjct: 51  FFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDKEGIC 105

Query: 116 DDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK 175
           D+     + EH                ++TFD  GV GH NH  ++  V  +        
Sbjct: 106 DNDSCHCNEEH----------------IITFDNYGVWGHCNHRDVHRGVLYV-------- 141

Query: 176 GCSVLTLQSVNVLRKYISLLDLPLSLL----HTQDV 207
                   S+N+ RKY   +D+ LS+L    H   V
Sbjct: 142 --------SLNIFRKYCGPVDIWLSILSAKRHPSKV 169
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
          Length = 250

 Score =  122 bits (306), Expect = 5e-27
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 44  LLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQG--ETRKKELLQSCDVLGI 101
           L   AHPDD  +    T+L +      V +   +AG     G  ETR++E   + + +G 
Sbjct: 13  LAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGY 72

Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALY 161
                + + +          + T+     +++ I     + V  F       H +H+   
Sbjct: 73  VAREQLDLGDS-------ELFYTKESLHKIIRIIRKYRPDTV--FCNPPDERHPDHMKAS 123

Query: 162 AAVRALH 168
             +    
Sbjct: 124 RLIYEAC 130
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
          Length = 240

 Score =  122 bits (306), Expect = 5e-27
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 44  LLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQG--ETRKKELLQSCDVLGI 101
           L   AHPDD  +    T+L +      V +   +AG     G  ETR++E   + + +G 
Sbjct: 13  LAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGY 72

Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALY 161
                + + +          + T+     +++ I     + V  F       H +H+   
Sbjct: 73  VAREQLDLGDS-------ELFYTKESLHKIIRIIRKYRPDTV--FCNPPDERHPDHMKAS 123

Query: 162 AAVRALH 168
             +    
Sbjct: 124 RLIYEAC 130
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
 gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
          Length = 185

 Score =  121 bits (302), Expect = 2e-26
 Identities = 22/132 (16%), Positives = 45/132 (33%), Gaps = 10/132 (7%)

Query: 43  TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGET-RKKELLQSCDVLGI 101
            L + AHPDD  +    ++  LA+   ++  +  + GN    G   R +E   +  +LG 
Sbjct: 19  ILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGC 78

Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGI---NLVVTFDAGGVSGHSNHI 158
             +  +   +               +   L   I+        ++  +       H +H+
Sbjct: 79  HQTIHLNFADTR------AHLQLNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHL 132

Query: 159 ALYAAVRALHSE 170
           A+Y A       
Sbjct: 133 AVYQASMVACRT 144
>pir||S44952 lmbE protein - Streptomyces lincolnensis
 pir||S69814 lmbE protein - Streptomyces lincolnensis
 emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
          Length = 270

 Score =  119 bits (296), Expect = 7e-26
 Identities = 38/230 (16%), Positives = 65/230 (27%), Gaps = 39/230 (16%)

Query: 43  TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN--------------QGETR 88
            L V AHPDDEA     TV           L+  + G                      R
Sbjct: 5   LLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVR 64

Query: 89  KKELLQSCDVLGIPLSSVMIIDNRDFPD-----DPGMQWDTEHVARVLLQHIEVNGINLV 143
             EL  S   LG      +   +          +  ++   +  A  L + I     ++V
Sbjct: 65  SAELDASARNLGYSAVHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPDVV 124

Query: 144 VTF-DAGGVSGHSNHIALYA-AVRALHSEGKLPK-GCSVLTLQSV----------NVLRK 190
           + +        H +HI       R +      P       + +             V   
Sbjct: 125 IGYGTNHTRDPHPDHIRANEVLTRRVDLLDHTPAVYHIAFSRRRHRALHQACVDSGVPSP 184

Query: 191 YISLLDLPLSLLHTQDVLFVLNSKE---VAQAKKAMSCHRSQL----LWF 233
           Y   L  P      + +  +++  +   V +   A+  H +Q+     WF
Sbjct: 185 YEGGLSAPPGAFDDEWITTLVDVTKGDAVERRLDALRSHVTQVPPASGWF 234
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
 emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
          Length = 218

 Score =  116 bits (290), Expect = 3e-25
 Identities = 35/189 (18%), Positives = 67/189 (34%), Gaps = 26/189 (13%)

Query: 43  TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN-YYNQGETRKKELLQSCDVLGI 101
            L+V+AHPDD  +     +   A     V + C + G    +  E R++E L + ++LG+
Sbjct: 4   VLVVVAHPDDAEIAMGMRIHWYALNGATVRVHCLTTGTPAPDGTEVRRQECLSAGELLGV 63

Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALY 161
              +   I +  F ++ G       +   L         +++ T        H +H    
Sbjct: 64  DQYTFSSIPDTRFVENRG------RINADLFDVFREARPDIIYTHYPD--DQHLDHSVTA 115

Query: 162 AAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKK 221
             V  +               +    LR + S    P S+    +  F   ++ +    +
Sbjct: 116 REVTTVAR-------------REAPNLRHFRS----PYSVGFEPNEFFFGTAELLEAKVR 158

Query: 222 AMSCHRSQL 230
           A+ C  SQ 
Sbjct: 159 ALKCFASQT 167
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
 emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
          Length = 292

 Score =  113 bits (281), Expect = 3e-24
 Identities = 30/144 (20%), Positives = 44/144 (29%), Gaps = 14/144 (9%)

Query: 46  VIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY--------YNQGETRKKELLQSCD 97
              HPDDE +               V  +  + G                R+ E L++  
Sbjct: 53  FAPHPDDETLGCGGVSAKKLASGVEVRFVFVTDGAASHRRLISPEELRSRRESEALEAVH 112

Query: 98  VLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNH 157
            LG    SV  +    FPD          + + ++  +E      V  F        S+H
Sbjct: 113 RLGASSESVTFLR---FPDAEASH-HIHAITKAIVPLLERWRPQSV--FVTHAKDPPSDH 166

Query: 158 IALYAAVRALHSEGKLPKGCSVLT 181
           IA+ AAVRA       P       
Sbjct: 167 IAVNAAVRAALRWHGRPLTVFEYP 190
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
 pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
 gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
          Length = 252

 Score =  111 bits (277), Expect = 1e-23
 Identities = 26/147 (17%), Positives = 46/147 (30%), Gaps = 20/147 (13%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN-YYNQGE--------TRKKEL 92
           R + V AHPDDE +    T+   AR    V L+  + G      G+         R++  
Sbjct: 2   RIMAVFAHPDDE-IGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHG 60

Query: 93  LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVS 152
               D +G        + +                A  L +       + V+T+      
Sbjct: 61  AWVADKIGA-KYHFFDMGDSRMTGGRDE-------ALQLARLYATFRPHAVITWSDD--H 110

Query: 153 GHSNHIALYAAVRALHSEGKLPKGCSV 179
            H +H           +  ++PK  + 
Sbjct: 111 PHPDHRMTAKIAFDAVTLARIPKILNE 137
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
           membrane-associated [Sinorhizobium meliloti]
 emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
           membrane-associated [Sinorhizobium meliloti]
          Length = 228

 Score =  110 bits (273), Expect = 4e-23
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 24/196 (12%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAG---NYYNQGETRKK-ELLQSCD 97
           RTL+V  HPDDE +    T+  LA     V++   + G    +  +   R + E  Q+  
Sbjct: 10  RTLVVAPHPDDEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATARIQAEARQAHR 69

Query: 98  VLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNH 157
            LG+  +  + +      +      +       LL+ +       V+         H +H
Sbjct: 70  ALGVTETIWLRLPAAQLAETAHATVN-----AALLELVHRLSPQTVLL--PFVGDMHMDH 122

Query: 158 IALYAAVRALHSEGKL--PKGCSVL-TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSK 214
              + +        +   PK      TL   N    Y+S   +P            ++  
Sbjct: 123 QLTFTSALVACRPHQAEFPKLVLAYETLSETNWNAPYLSPAFVP---------NVFVDIS 173

Query: 215 EVAQAK-KAMSCHRSQ 229
           E  +AK KAM    SQ
Sbjct: 174 EHLEAKLKAMELFASQ 189
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
          Length = 247

 Score =  103 bits (256), Expect = 3e-21
 Identities = 27/145 (18%), Positives = 45/145 (30%), Gaps = 9/145 (6%)

Query: 35  GRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY--YNQGETRKKEL 92
                  R L V+AHPDD     +  V         V  L  + G          R   L
Sbjct: 11  SMPDDWRRALAVVAHPDDLEYGCSAAVASWVADGKDVAYLLATRGEAGIDTLDPGRAGPL 70

Query: 93  LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTF---DAG 149
            ++          V  ++  D  D   +      + R +   +  +   LV+T    D  
Sbjct: 71  REAEQRAAAAAVGVRAVEFLDHRDG--VIEYGASLRRDIAAAVRRHRPELVITLNHRDTW 128

Query: 150 --GVSGHSNHIALYAAVRALHSEGK 172
             G     +H+A+  AV    ++  
Sbjct: 129 AAGAWNTPDHVAVGRAVLDAAADAG 153
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
 dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
          Length = 229

 Score =  103 bits (255), Expect = 4e-21
 Identities = 38/194 (19%), Positives = 60/194 (30%), Gaps = 35/194 (18%)

Query: 42  RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN------QGETRKKELLQS 95
           + L + AHPDD  +F   T+   A     +     + G              R++E   +
Sbjct: 2   KILALGAHPDDIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAA 61

Query: 96  CDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHS 155
              L       +   +       G       +   L   I   G +LV+T        H+
Sbjct: 62  -AGLLGAAPRFLDFPD-------GELVADAALIGALKTLIAGTGPDLVITHAPNDY--HA 111

Query: 156 NHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKE 215
           +H AL  +VR   S         VL            ++     S  H  D+      K 
Sbjct: 112 DHRALSDSVRIAASFA-----VPVLHAD---------TMGGTGFSPTHYVDISAHAEIK- 156

Query: 216 VAQAKKAMSCHRSQ 229
                KA+  H+SQ
Sbjct: 157 ----AKAIRMHQSQ 166
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
 pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
 gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
          Length = 232

 Score =  100 bits (248), Expect = 3e-20
 Identities = 37/197 (18%), Positives = 68/197 (33%), Gaps = 26/197 (13%)

Query: 45  LVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGE----------TRKKELLQ 94
           +V  HPDDEA+     +  LA     V+ L  + G + +              R  E  +
Sbjct: 15  VVAPHPDDEALGCGALLAALAEAGREVWALLLTDGGFSHPASKAYPRPRLSAVRLAEWRE 74

Query: 95  SCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGH 154
              VLG+P +  + +     PD    +  T      + Q         V+         H
Sbjct: 75  GLSVLGVPPARTVAL---GLPDGALGEHLTAAARAQVRQAFAQARPGTVLL--PWERDPH 129

Query: 155 SNHIALYAAVRALH-SEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNS 213
            +H A +  +R +  S+    +    L  +  +         D P      +    V + 
Sbjct: 130 PDHRAAWHLLRGVLPSDTLALEYAVWLPERGAD--------ADWPRPDEVEELTFAVGDW 181

Query: 214 KEVAQAKKAMSCHRSQL 230
           ++     +A++ HR+QL
Sbjct: 182 RDAKA--RAIASHRTQL 196
>ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Deinococcus
           radiodurans]
 pir||A75600 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF12252.1|AE001862_78 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 350

 Score = 86.3 bits (212), Expect = 4e-16
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 30/136 (22%)

Query: 9   VALAVLAWGFLWVWDSSERMK---SREQGGRLG------AESRTLLVIAHPDDEAMFFAP 59
           V +AV+  G     +S    +      Q  RL       A  R LL+  HPDDE +    
Sbjct: 20  VVIAVVGLGLAAWINSPLVARWFGGERQVARLAGTPPFRAGQRVLLLAPHPDDETLCCGG 79

Query: 60  TVLGLARLRHWVYLLCFSAG-------------------NYYNQGETRKKELLQSCDVLG 100
           TV         V++   +AG                   N    G+TR  E  ++  VLG
Sbjct: 80  TVQQARAAGAEVFIAWMTAGDGFEFDAALTEHVLVPRPHNMRALGQTRAGEAERAAAVLG 139

Query: 101 I--PLSSVMIIDNRDF 114
           +    + ++   +   
Sbjct: 140 VPADHTFMLGYPDGGL 155
>pir||D69906 hypothetical protein yojG - Bacillus subtilis
 emb|CAB13838.1| (Z99114) yojG [Bacillus subtilis]
 gb|AAC17855.1| (AF026147) YojG [Bacillus subtilis]
          Length = 142

 Score = 83.6 bits (205), Expect = 3e-15
 Identities = 38/124 (30%), Positives = 54/124 (42%), Gaps = 24/124 (19%)

Query: 113 DFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA-GGVSGHSNHIALYAAV-RALHSE 170
              D      D E++A ++ + I+    +L+VTF    GV  H +H A   AV RAL+ +
Sbjct: 3   GLRDKTLEFEDDEYLADIMEEIIDDVKPSLIVTFYPGHGV--HPDHDACGEAVIRALYRK 60

Query: 171 GK--LPKG-CSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAK-KAMSCH 226
            K   P+  C  +T     V              L   DV  VL+ KEVA  K  A+  H
Sbjct: 61  KKEDRPRTICMAITRNREEV--------------LGEADV--VLDIKEVADIKMNALRAH 104

Query: 227 RSQL 230
           R+Q 
Sbjct: 105 RTQT 108
CPU time:    74.55 user secs.	    2.32 sys. secs	   76.87 total secs.

  Database: nr
    Posted date:  Apr 21, 2002  2:19 PM
  Number of letters in database: 277,845,442
  Number of sequences in database:  887,402
  
Lambda     K      H
   0.317    0.177    0.515 

Gapped
Lambda     K      H
   0.270   0.0621    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183394144
Number of Sequences: 887402
Number of extensions: 9064274
Number of successful extensions: 38493
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 38224
Number of HSP's gapped (non-prelim): 153
length of query: 252
length of database: 277,845,442
effective HSP length: 52
effective length of query: 200
effective length of database: 231,700,538
effective search space: 46340107600
effective search space used: 46340107600
T: 11
A: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.8 bits)
S2: 73 (32.4 bits)