Sequences with E-value BETTER than threshold (0.002) 333 2e-90
321 9e-87
253 3e-66
250 2e-65
238 7e-62
200 2e-50
191 8e-48
189 3e-47
186 3e-46
184 2e-45
175 8e-43
168 6e-41
166 5e-40
163 4e-39
158 1e-37
149 7e-35
147 2e-34
147 2e-34
146 4e-34
145 5e-34
142 5e-33
142 6e-33
141 1e-32
139 4e-32
139 6e-32
138 1e-31
137 2e-31
136 3e-31
136 5e-31
136 5e-31
133 4e-30
131 8e-30
131 1e-29
131 2e-29
128 1e-28
126 3e-28
125 9e-28
122 5e-27
122 5e-27
121 2e-26
119 7e-26
116 3e-25
113 3e-24
111 1e-23
110 4e-23
103 3e-21
103 4e-21
100 3e-20
86 4e-16
84 3e-15
Alignments
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
Length = 252
Score = 333 bits (846), Expect = 2e-90
Identities = 195/252 (77%), Positives = 213/252 (84%)
Query: 1 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
ME + LLCVA+AVL WGFL VW+S+ERM+S EQ G GA SR L+VIAHPDDEAMFFAPT
Sbjct: 1 MEVVGLLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPT 60
Query: 61 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
+LGLARL+ V LLCFS+GNYYNQGE RKKELLQSC VLGIP S VMIID R+FPDDP +
Sbjct: 61 ILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEV 120
Query: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
QWDTEHVA +LQHI N +LVVTFDA GVSGHSNHIALY AVRALHS GKLP+GCSVL
Sbjct: 121 QWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVL 180
Query: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
TLQSVNVLRKY+ LLDLP +LL Q VLFVL SKEVAQAKKAMSCHRSQLLWFR LY +F
Sbjct: 181 TLQSVNVLRKYVFLLDLPWTLLSPQGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLYTVF 240
Query: 241 SRYMRINSLSFL 252
SRYM +NSL L
Sbjct: 241 SRYMSVNSLQLL 252
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
Length = 252
Score = 321 bits (815), Expect = 9e-87
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
Sbjct: 1 MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
Query: 61 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
Sbjct: 61 VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
Query: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
Sbjct: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
Query: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
Sbjct: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
Query: 241 SRYMRINSLSFL 252
SRYMRINSLSFL
Sbjct: 241 SRYMRINSLSFL 252
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
Length = 390
Score = 253 bits (641), Expect = 3e-66
Identities = 94/241 (39%), Positives = 131/241 (54%), Gaps = 27/241 (11%)
Query: 35 GRLGAESRTLLVIAHPDDEAMFFAPTVLGLAR-LRHWVYLLCFSAGN------------- 80
+ R LL+ AHPDDE MFF P + L + VY+LC S G
Sbjct: 134 PKTACMERVLLITAHPDDECMFFGPLIYSLTQRQGCQVYILCLSNGETTSSDIIPKPPID 193
Query: 81 --------YYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLL 132
+ ++ + R++EL +SC LGIP S++++++ + PDDP + W + VA ++L
Sbjct: 194 LEALNESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVASLIL 253
Query: 133 QHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK----GCSVLTLQSVNVL 188
IE I + TFD GVS H NH A+Y A +L LPK C TL S+NV+
Sbjct: 254 HTIESLDIQAIFTFDRDGVSSHPNHCAVYYAAASLCLANLLPKGEEAYCKFYTLDSINVV 313
Query: 189 RKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIFSRYMRINS 248
RKY+S+LDL + + +LN KE A + AM H+SQ+ WFR LYI FSRYM INS
Sbjct: 314 RKYLSILDLLCTCFMSTH-WCILNWKEAAIVRSAMMEHQSQMRWFRWLYIYFSRYMFINS 372
Query: 249 L 249
+
Sbjct: 373 M 373
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
deacetylase [Schizosaccharomyces pombe]
Length = 248
Score = 250 bits (634), Expect = 2e-65
Identities = 89/251 (35%), Positives = 129/251 (50%), Gaps = 21/251 (8%)
Query: 6 LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65
LL A+AVL+ ++E +E +L ES L V AHPDDE+MFF PT+ L
Sbjct: 8 LLVTAIAVLS-------TANESSSGQE---KLAVES-ILFVFAHPDDESMFFGPTIDYLG 56
Query: 66 RLRH-WVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDT 124
V++LC S GN G R+KEL+ + I ++V ++ + D +WD
Sbjct: 57 NQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDP 116
Query: 125 EHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQS 184
VA+ + Q IE I ++TFD G+SGH NHIA Y + K V L+S
Sbjct: 117 TDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIV---KATPQVQVFVLES 173
Query: 185 VNVLRKYISLLDLPLSLLHTQ-----DVLFVLNSKEVAQAKKAM-SCHRSQLLWFRRLYI 238
VN+ RKYIS LD +L+ +Q ++ + K + + AM H+SQ++WFR +I
Sbjct: 174 VNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWI 233
Query: 239 IFSRYMRINSL 249
S+YM N L
Sbjct: 234 YLSKYMSNNVL 244
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
cerevisiae)
emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
Length = 304
Score = 238 bits (603), Expect = 7e-62
Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 38/278 (13%)
Query: 7 LCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTV---LG 63
L + L +L F S + + LVIAHPDDE MFF+P +
Sbjct: 21 LAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSPIISQLNS 80
Query: 64 LARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWD 123
++C S GN GETR +EL +S +L + + + DF D WD
Sbjct: 81 YFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL-LHNERAVSVQVMDFQDGMDEIWD 139
Query: 124 TEHVARVLLQHIEVNGI---NLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKG---- 176
+ + L Q I++ ++VTFD+ GVS H NH + YAAV+ L + PK
Sbjct: 140 IDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNE 199
Query: 177 ----CSVLTLQSV--NVLRKYISLL-------------------DLPLSLLHTQDVLFVL 211
+ L L+S N++ KY S + LP + +D L ++
Sbjct: 200 QPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLM 259
Query: 212 NS--KEVAQAKKAMSCHRSQLLWFRRLYIIFSRYMRIN 247
N+ + V ++ H SQ++WFR + IFSR++ +N
Sbjct: 260 NTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVN 297
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
Length = 223
Score = 200 bits (506), Expect = 2e-50
Identities = 60/202 (29%), Positives = 98/202 (47%), Gaps = 27/202 (13%)
Query: 52 DEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDN 111
D+ FF+PT+ +++LCFS GN G R +EL ++C VL + + D
Sbjct: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDK 88
Query: 112 RDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEG 171
D+ + EH ++TFD GV GH NH ++ +
Sbjct: 89 EGICDNDSCHCNEEH----------------IITFDNYGVWGHCNHRDVHPPIDCKIDSA 132
Query: 172 KLPKGCSVLTLQSVNVLRKYISLLDLPLSLL----HTQDVLFVLNSKEVAQAKKAMSCHR 227
K G + S+N+ RKY +D+ LS+L H V+ + +K+ ++ KAM+ H
Sbjct: 133 KRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIII--NKQPWKSFKAMAQHL 190
Query: 228 SQLLWFRRLYIIFSRYMRINSL 249
SQ +WFR+L+++FS Y +N+L
Sbjct: 191 SQWVWFRKLFVLFSSYTYVNTL 212
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 191 bits (483), Expect = 8e-48
Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 26/208 (12%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
+ L + HPDD + T+ L+ + V +C + G R+KE
Sbjct: 37 KVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSGHELAAIRRKEE 96
Query: 93 LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG-GV 151
+S +LG+ + + + P + V + L + + + V D
Sbjct: 97 EESARLLGVKKIYWLNYRDTELP-------YSREVRKDLTKILRKEQPDGVFAPDPWLPY 149
Query: 152 SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVL 211
H +H + +LP + +N Y S + L H +++
Sbjct: 150 ESHPDHRRTGFLAIESVAFSQLPNFSNTDLDIGLN---PYNSGSFIALYYTHKP--NYIV 204
Query: 212 NSKEVAQAK-KAMSCHRSQL---LWFRR 235
+ ++ + K KA+ HRSQ +W +
Sbjct: 205 DITDLMELKLKAIRVHRSQFPDDIWEKW 232
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 267
Score = 189 bits (478), Expect = 3e-47
Identities = 37/208 (17%), Positives = 76/208 (35%), Gaps = 27/208 (12%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
+ + + HPDD A+ T+ L+ V +C + G R++E
Sbjct: 33 KVICIEPHPDDCAIGMGGTIKKLSDEGVEVIYICMTDGYMGTTDEKLSGHELALIRRREE 92
Query: 93 LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG-GV 151
+S +LG+ + + + P + V + L++ I + V D
Sbjct: 93 EESAKLLGVRKIYWLNYRDTELP-------YSREVRKDLVKIIRKEKPDGVFAPDPWLPY 145
Query: 152 SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVL 211
H +H + +LP + +++ K S+ + L H +++
Sbjct: 146 ESHPDHRRTGFLAIESVAFSQLPNFSN----IDIDIGLKPHSVSFIALYYTHKP--NYIV 199
Query: 212 NSKEVAQAK-KAMSCHRSQL---LWFRR 235
+ ++ + K KA+ HRSQ +W
Sbjct: 200 DITDLMELKLKAIRAHRSQFTDDIWETW 227
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 267
Score = 186 bits (470), Expect = 3e-46
Identities = 36/208 (17%), Positives = 69/208 (32%), Gaps = 27/208 (12%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
+ L + HPDD + T+ L V C + G R++E
Sbjct: 33 KVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREE 92
Query: 93 LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG-GV 151
+S +LG+ + + + P + V + L++ I + V D
Sbjct: 93 EESSKLLGVKKIYWLNYRDTELP-------YSREVRKDLVRIIRKEKPDGVFLPDPWLPY 145
Query: 152 SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVL 211
H +H + LP +V + +S + L + + +
Sbjct: 146 EAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGL--GPHQVSFIALYYT----NKPNYFV 199
Query: 212 NSKEVAQAK-KAMSCHRSQL---LWFRR 235
+ +V + K KA+ H+SQ +W
Sbjct: 200 DITDVMELKLKAIRTHKSQFPDDVWEVW 227
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75562 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
Length = 237
Score = 184 bits (463), Expect = 2e-45
Identities = 49/220 (22%), Positives = 79/220 (35%), Gaps = 32/220 (14%)
Query: 30 SREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY------- 82
G + LL++ HPDDE + T++ L+ + G
Sbjct: 2 LPTMTSETGKGLKLLLIVPHPDDEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCD 61
Query: 83 ---NQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNG 139
R EL +V+G+ + + + FPD + E + + +E
Sbjct: 62 GPEELARMRAVELAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLR 121
Query: 140 INLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYIS------ 193
V+TF G +GH +H+ + AV+A L S VL Y S
Sbjct: 122 PETVLTFPPNGSNGHPDHMTTHRAVKAAWD---------RLPAGSRPVLWYYASETPPEN 172
Query: 194 --LLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLL 231
L L +DV ++ K +A++CHRSQ L
Sbjct: 173 EELRAAWLPPTVKRDVSALVTRK-----LQAIACHRSQAL 207
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 221
Score = 175 bits (440), Expect = 8e-43
Identities = 44/209 (21%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 37 LGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-NQG---------- 85
+ E L++ HPDDE A T+ + V C + G N G
Sbjct: 1 MTDERHVLVIFPHPDDETFSSAGTLASYIQKGIPVTYACLTLGQMGRNLGNPPFATRESL 60
Query: 86 -ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVV 144
R++EL ++C V+GI + D EH+ ++ I+ +L++
Sbjct: 61 PSIRERELEEACKVIGIT-----DLRKMGLRDKTVEFEPYEHIDGMIKSLIDDTNPSLII 115
Query: 145 TFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHT 204
+F G + H +H A AV + + + L D +L
Sbjct: 116 SFYP-GYAVHPDHEATADAV---------IRTVERMPKEERPRLTLVAFSNDATEALGEP 165
Query: 205 QDVLFVLNSKEVAQAKKAMSCHRSQLLWF 233
+ + KE+ KA H SQ F
Sbjct: 166 DIQNDITDFKELKI--KAFEAHASQTGPF 192
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 168 bits (424), Expect = 6e-41
Identities = 48/209 (22%), Positives = 79/209 (36%), Gaps = 37/209 (17%)
Query: 40 ESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-NQG-----------ET 87
E L++ HPDDEA + T+ + V C + G N G +
Sbjct: 4 ERHVLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESLPDI 63
Query: 88 RKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFD 147
RKKEL++S + +GI ++ ++ D + ++ + +L++TF
Sbjct: 64 RKKELIKSAEAMGIEDLRMLGYRDKTI-----EFEDETKLTDMVSDLMAELNPSLIITFY 118
Query: 148 AGGVSGHSNHIALYAAVRALHS---EGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHT 204
G S H +H A AV + PK ++ + L
Sbjct: 119 P-GYSVHPDHEATGRAVVRAVRRLEKSMRPK-------------LYGVAFSNGHQEELGD 164
Query: 205 QDVLFVLNSKEVAQAKK-AMSCHRSQLLW 232
D+LF + VA+ KK A+ H SQ W
Sbjct: 165 PDILF--DISPVAEQKKAAIRAHISQTAW 191
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
proteins [Bacillus subtilis]
sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 166 bits (417), Expect = 5e-40
Identities = 33/195 (16%), Positives = 71/195 (35%), Gaps = 18/195 (9%)
Query: 43 TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGET--RKKELLQSCDVLG 100
L AH DD + T+ + V + + + G RK+E ++ +LG
Sbjct: 6 VLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTEAELSSNGTVSLRKEEAAEAARILG 65
Query: 101 IPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIAL 160
+ + +R ++ R ++ I + V F H +H
Sbjct: 66 ADKRIQLTLPDRGL-------IMSDQAIRSIVTVIRICRPKAV--FMPYKKDRHPDHGNA 116
Query: 161 YAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQD-VLFVLNSKEVAQA 219
A V + K +L + V + Y ++ + H D V+ + ++ E
Sbjct: 117 AALVEEAIFSAGIHKYKDEKSLPAHKVSKVYYYMI----NGFHQPDFVIDISDTIEAK-- 170
Query: 220 KKAMSCHRSQLLWFR 234
K++++ ++SQ + +
Sbjct: 171 KQSLNAYKSQFIPSK 185
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 221
Score = 163 bits (409), Expect = 4e-39
Identities = 48/209 (22%), Positives = 85/209 (39%), Gaps = 31/209 (14%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN---------QGETRKKEL 92
R L + HPDDE T+ LA H +Y++ + G+ + E R+KE
Sbjct: 2 RILFISPHPDDECDNAGGTLAKLA-KSHEIYIVYMTDGSAGSPNPEERGEKLAEIRRKEA 60
Query: 93 LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVS 152
L+ VLGI + ++ D ++ +E VA++L + N+++ +
Sbjct: 61 LEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREI----KPNIII--YPSLLD 114
Query: 153 GHSNHIALYA----AVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVL 208
GH++H + A+R + + L + S +V D LL
Sbjct: 115 GHNDHWSGGYITRIAIRKVGITVNELSYLNWLPIPSKSVF-------DAIKYLLIPFHRK 167
Query: 209 FVLNSKEVAQAK-KAMSCHRSQLLWFRRL 236
++ +E + K +AM H SQ F+ L
Sbjct: 168 IKVDIREYKRIKLEAMKKHESQ---FKYL 193
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75517 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
Length = 281
Score = 158 bits (397), Expect = 1e-37
Identities = 56/227 (24%), Positives = 85/227 (36%), Gaps = 28/227 (12%)
Query: 32 EQGGRLGAESR-TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY--------- 81
A L++ AHPDDEA T+ AR V L C + G
Sbjct: 1 MTSSSTPAPRATLLVIFAHPDDEAFSVGGTLTHYARQGVRVVLACATRGEAGKITVPGMT 60
Query: 82 -YNQGETRKKELLQSCDVLGIPLSSVMIIDNRD-----FPDDPGMQWDTEHVAR--VLLQ 133
+ G R++EL ++C L I + + DDP + + L
Sbjct: 61 VDDLGAQREQELREACRALEIEPPVFLDYHDSGRYERTRHDDPTALMNVNPLDAEVKLRA 120
Query: 134 HIEVNGINLVVTFDAGGVSGHSNHIALYAA-VRALHSEGKLPKGCSV-------LTLQSV 185
IE ++VTFD G GH +H+ ++ A V A S G LP G +
Sbjct: 121 LIEDVQPQVIVTFDPHGAYGHVDHLQMHRATVAAFFSTGHLPSGGPQRLYYTAMTHQAAA 180
Query: 186 NVLRKYISLLDLPLSLLHTQDVLFV-LNSKEVAQAKK-AMSCHRSQL 230
+ R PL + L V ++ A+ KK A++ H +Q+
Sbjct: 181 QISRLGHDQSLDPLVYGVSDSTLAVTMDVGAYAENKKAALAAHGTQM 227
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
Length = 288
Score = 149 bits (373), Expect = 7e-35
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 22/157 (14%)
Query: 39 AESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN--------------Q 84
+E R + V AHPDDE+ A T+ A H V ++ + G
Sbjct: 2 SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRI 61
Query: 85 GETRKKELLQSCDVLGIPLSSVMIIDN--------RDFPDDPGMQWDTEHVARVLLQHIE 136
E R+ E+ ++ ++LG+ + + +D+ PDD + E L++ +
Sbjct: 62 AEIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVR 121
Query: 137 VNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKL 173
+++ T+D G H +HI + A +
Sbjct: 122 EFRPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGD 158
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
Length = 293
Score = 147 bits (369), Expect = 2e-34
Identities = 31/160 (19%), Positives = 58/160 (35%), Gaps = 23/160 (14%)
Query: 37 LGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-------------- 82
+ + R + V AHPDDE+ A T+ V ++ + G
Sbjct: 1 MTDQLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIE 60
Query: 83 -NQGETRKKELLQSCDVLGIPLSSVMIIDN--------RDFPDDPGMQWDTEHVARVLLQ 133
N E R+KE+ ++ ++LG+ + +D+ P+ D + A L++
Sbjct: 61 ENIHEVRRKEMDEAREILGVGQEWLGFVDSGLPEGDPLPPLPEGCFALEDVDKAAGELVR 120
Query: 134 HIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKL 173
I ++ T+D G H +HI +
Sbjct: 121 KIRSFRPQVITTYDENGGYPHPDHIMTHKITMVAFEGAAD 160
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 147 bits (369), Expect = 2e-34
Identities = 48/201 (23%), Positives = 78/201 (37%), Gaps = 18/201 (8%)
Query: 36 RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY-------YNQGETR 88
RL L V AHPDDE+ + + LCF+ G N GE R
Sbjct: 6 RLPCAHEVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVR 65
Query: 89 KKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA 148
++EL + VLG+ ++ PD+ Q + + ++ + G +L++ FD
Sbjct: 66 REELAAAAQVLGVDHVQLLAY-----PDNGLAQIPLNELTQRVVDALA--GADLLLVFDD 118
Query: 149 GGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVL 208
GV+GH +H A A S +P L + L S H L
Sbjct: 119 NGVTGHPDHRRATEAALAAASTPGIPVLAWALPQPIADRLNAEFSASFGGRGHGH----L 174
Query: 209 FVLNSKEVAQAKKAMSCHRSQ 229
++ + ++ A+ CH +Q
Sbjct: 175 DIMIEVDRSRQLAAIGCHFTQ 195
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
tuberculosis H37Rv]
pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
H37Rv]
Length = 223
Score = 146 bits (366), Expect = 4e-34
Identities = 48/201 (23%), Positives = 78/201 (37%), Gaps = 18/201 (8%)
Query: 36 RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY-------YNQGETR 88
RL L V AHPDDE+ + + LCF+ G N GE R
Sbjct: 6 RLPCAHEVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVR 65
Query: 89 KKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA 148
++EL + VLG+ ++ PD+ Q + + ++ + G +L++ FD
Sbjct: 66 REELAAAAQVLGVDHVQLLAY-----PDNGLAQIPLNELTQRVVDALA--GADLLLVFDD 118
Query: 149 GGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVL 208
GV+GH +H A A S +P L + L S H L
Sbjct: 119 NGVTGHPDHRRATEAALAAASTPSIPVLAWALPQPIADRLNAEFSASFGGRGHGH----L 174
Query: 209 FVLNSKEVAQAKKAMSCHRSQ 229
++ + ++ A+ CH +Q
Sbjct: 175 DIMIEVDRSRQLAAIGCHFTQ 195
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
Length = 221
Score = 145 bits (365), Expect = 5e-34
Identities = 56/207 (27%), Positives = 87/207 (41%), Gaps = 41/207 (19%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-NQGE-----------TRK 89
L+++ HPDDE+ A + + V C + G N G+ RK
Sbjct: 4 HVLVILPHPDDESYGVAGLIALNRKKDIPVTYACATLGEMGRNMGDPFFANRETLPLLRK 63
Query: 90 KELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA- 148
+EL+ +C + I ++ + D D E++A ++ + I+ +L+VTF
Sbjct: 64 QELINACKEMDINDLRMLGLR-----DKTLEFEDDEYLADIMEEIIDDVKPSLIVTFYPG 118
Query: 149 GGVSGHSNHIALYAAV-RALHSEGK--LPKG-CSVLTLQSVNVLRKYISLLDLPLSLLHT 204
GV H +H A AV RAL+ + K P+ C +T V L
Sbjct: 119 HGV--HPDHDACGEAVIRALYRKKKEDRPRTICMAITRNREEV--------------LGE 162
Query: 205 QDVLFVLNSKEVAQAK-KAMSCHRSQL 230
DV VL+ KEVA K A+ HR+Q
Sbjct: 163 ADV--VLDIKEVADIKMNALRAHRTQT 187
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 308
Score = 142 bits (357), Expect = 5e-33
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 26/148 (17%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN----------------YYNQG 85
R L V AHPDDE++ T+ V ++ + G G
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65
Query: 86 ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDP----------GMQWDTEHVARVLLQHI 135
R EL ++ LG+ + R + D L+ I
Sbjct: 66 GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125
Query: 136 EVNGINLVVTFDAGGVSGHSNHIALYAA 163
++VVT+D G GH +H+ +
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTHFI 153
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
mediterranei]
Length = 255
Score = 142 bits (356), Expect = 6e-33
Identities = 35/208 (16%), Positives = 67/208 (31%), Gaps = 24/208 (11%)
Query: 46 VIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-----------NQGETRKKELLQ 94
AHP+D+ + H V L+ + G G+ R E
Sbjct: 7 FHAHPNDDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVEARA 66
Query: 95 SCDVLGIPLSSVMIIDNRDFP-----DDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAG 149
+ DVLG+ + + D E AR L + +++ +D
Sbjct: 67 AADVLGVDRLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTVYDEK 126
Query: 150 GVSGHSNHIALY----AAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSL---L 202
G G +HI ++ A + + +++ + + +DLP
Sbjct: 127 GTYGDPDHIQVHRVGTRAAELAGTAKVFQSTINREHIKANQRVLAEQAGVDLPAGPDFGT 186
Query: 203 HTQDVLFVLN-SKEVAQAKKAMSCHRSQ 229
++ ++ S +KA+ H SQ
Sbjct: 187 PEAELTCRVDVSAYTEYKRKALLAHASQ 214
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
radiodurans]
Length = 239
Score = 141 bits (354), Expect = 1e-32
Identities = 38/212 (17%), Positives = 69/212 (31%), Gaps = 35/212 (16%)
Query: 29 KSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGE-- 86
+ G L + HPDD + T++ LA+ V +L + G QG
Sbjct: 4 TLQTVYGE-AQPLDWLCLAPHPDDAEIGAGGTLIRLAQAGRAVGILELTRGEKGTQGTPA 62
Query: 87 TRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTF 146
R+ E + + ++ + + + + + D P A L + ++V
Sbjct: 63 ERQAECVAAARLMDLSWRGQLGLPDGELADTPP-------FAHALAAALRTVRPRVLVV- 114
Query: 147 DAGGVSGHSNH--------IALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLP 198
H +H A++ A G P + L Y D+
Sbjct: 115 -PHWHDRHPDHFGTYHLTKRAIHLAALKKADLGGDPWRVQRVLL--------YQGNSDIS 165
Query: 199 LSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQL 230
++L D+ V+ E A+ H SQ
Sbjct: 166 ANVLV--DIGSVMTEWEA-----AIRAHTSQF 190
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
Length = 290
Score = 139 bits (349), Expect = 4e-32
Identities = 48/241 (19%), Positives = 83/241 (33%), Gaps = 50/241 (20%)
Query: 39 AESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN--------------YYNQ 84
+E R + V AHPDDE+ A T+ A H V ++ + G + +
Sbjct: 2 SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGHI 61
Query: 85 GETRKKELLQSCDVLGIPLSSVMIIDN--------RDFPDDPGMQWDTEHVARVLLQHIE 136
E R+ E+ ++ ++LG+ + + ID+ PDD E L++ +
Sbjct: 62 AEIRRDEMAKAAEILGVEHTWLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVVR 121
Query: 137 VNGINLVVTFDAGGVSGHSNHIALYA----AVRALHS-----EGKLPKGCSVLT-----L 182
+++ T+D G H +HI + A A + P S L L
Sbjct: 122 KFRPHVLTTYDENGGYPHPDHIRCHQVSVDAYEAACDYRRFPDAGKPWTVSKLYYNHGFL 181
Query: 183 QSVNVLRK-------YISLLDLPL---SLLHTQDVLFVLNSKEVAQAK----KAMSCHRS 228
++ L D L + H V E + A+ H +
Sbjct: 182 RARMQLLHDEFAKHGQAGPFDKWLAQSNPAHDPFESRVTTRVECSAYFSQRDDALRAHAT 241
Query: 229 Q 229
Q
Sbjct: 242 Q 242
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 295
Score = 139 bits (348), Expect = 6e-32
Identities = 48/207 (23%), Positives = 71/207 (34%), Gaps = 35/207 (16%)
Query: 40 ESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN-------------QGE 86
R LLV AHPDDE++ T+ A V L+ + G G
Sbjct: 6 GRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSGAALGG 65
Query: 87 TRKKELLQSCDVLGIPLSSVMI----IDNRDF-----PDDPGMQWD--TEHVARVLLQHI 135
R+ EL + LG+ ++ + DDPG W + A +L+ I
Sbjct: 66 HRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAALLVDVI 125
Query: 136 EVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSV--LTLQSVNVLRKYIS 193
++VT+D G GH +HI + GC V + V R +
Sbjct: 126 REVRPQVLVTYDPNGGYGHPDHIQAHRIAMRAAELAAE-AGCPVAKVYWNRVPRSRVEDA 184
Query: 194 LL----DLPLSLLHTQ----DVLFVLN 212
DLP DV V++
Sbjct: 185 FARLRDDLPGLPFEKAAGVEDVPGVVD 211
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 815
Score = 138 bits (345), Expect = 1e-31
Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 36/192 (18%)
Query: 15 AWGFLWVWDSSERMKSREQGGRLGAESR----------TLLVIAHPDDEAMFFAPTVLGL 64
W + + ER++ + L R + AHPDDE +
Sbjct: 10 YWRRPPMLNPRERIERQMADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYF 66
Query: 65 -ARLRHWVYLLCFSAGNYYN----------QGETRKKELLQSCDVLGIP-----LSSVMI 108
L + C + G G R +EL ++ V+ I
Sbjct: 67 RTELGMRTIIACSTRGEGGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADI 126
Query: 109 IDNRDFP---DDPGMQWDTEHVARVLLQHIEVNGINLVV-TF-DAGGVSGHSNHIALYAA 163
I + F D +W + L++ ++V+ TF D G GH H A+ A
Sbjct: 127 IHDFGFSKDGDQTFGRWGQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRA 184
Query: 164 VRALHSEGKLPK 175
++ + P
Sbjct: 185 AKSAITLAADPS 196
>ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80196.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
Length = 601
Score = 137 bits (343), Expect = 2e-31
Identities = 24/153 (15%), Positives = 57/153 (36%), Gaps = 6/153 (3%)
Query: 6 LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65
+ C+ + + + D + + ++++ H DDE T+ L
Sbjct: 18 IFCIVMTL--FISTANMDYGSNFSNSIDYSEMWTNKEIMVIVPHQDDEINLAGATIKRLI 75
Query: 66 RLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQW--- 122
+ V ++ + G++ G R KE +++ +LG+ +V+ + D ++
Sbjct: 76 DNGNNVKVVFATNGDFKGLGTKRIKEAVEAVRILGVNSENVIFLGYGDRWEETKEHIYNS 135
Query: 123 DTEHVARVLLQHIEVNGINLVVTFDAGGVSGHS 155
D + + E G + + F +SG
Sbjct: 136 DDNKIISSYIGKNETYGTDKYLDF-RSSISGEP 167
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
Length = 151
Score = 136 bits (342), Expect = 3e-31
Identities = 51/123 (41%), Positives = 79/123 (63%), Gaps = 2/123 (1%)
Query: 37 LGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSC 96
L ++SR LL+IAHPDDE MFF+PT+ L + H V++LC S GN+ G+ R +EL ++
Sbjct: 28 LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKIRARELSRAA 87
Query: 97 DVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSN 156
LGI S V+ +D +F D W+ + +++++H+EV + V++FD+ GVSGH N
Sbjct: 88 SKLGISASDVICLDYDEFADGD--TWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHN 145
Query: 157 HIA 159
H
Sbjct: 146 HAR 148
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 136 bits (340), Expect = 5e-31
Identities = 38/192 (19%), Positives = 64/192 (32%), Gaps = 17/192 (8%)
Query: 41 SRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGET--RKKELLQSCDV 98
L AHPDD + T+ + H V + + + G R+KE + +
Sbjct: 4 LDILAFGAHPDDVEIGMGATLYHYRQKGHRVGICNLTKAELSSNGTVEQRQKEAADASRI 63
Query: 99 LGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHI 158
LGI + + +R +P Q ++ I F V H +H
Sbjct: 64 LGIDERIQLDLPDRGLR-NPSEQQVRN-----IVSVIRHCQPT--FVFVPYPVDRHPDHG 115
Query: 159 ALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQ 218
V+ ++ + V L Y+ LL V + EV Q
Sbjct: 116 HCAELVKEAVFNARIRNYKAEGGAHHVQDLFYYMINSFERPDLLV-----DVSHCYEVKQ 170
Query: 219 AKKAMSCHRSQL 230
A A++ ++SQ
Sbjct: 171 A--ALNAYKSQF 180
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
Length = 277
Score = 136 bits (340), Expect = 5e-31
Identities = 46/226 (20%), Positives = 77/226 (33%), Gaps = 39/226 (17%)
Query: 43 TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSA------------GNYYN----QGE 86
+ V AHPDDEA + A L+ + G+ +
Sbjct: 8 LMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGHDPAAVAL 67
Query: 87 TRKKELLQSCDVLGIPLSSVMIIDNRDF-----PDDPGMQW--DTEHVARVLLQHIEVNG 139
R++EL +S D+L I + + D PG W E A L + +
Sbjct: 68 MRRRELEESRDILKISDLETLDYADSGMMGWPSNDAPGSFWRTPVEEGAARLAELMRHYR 127
Query: 140 INLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLL---- 195
++VVT+D G GH +HI + A L T + R +
Sbjct: 128 PDVVVTYDENGFYGHPDHIQAHRITMAALEMTTLTPKVYWTTAPRSMMQRFGEIMREFHP 187
Query: 196 DLPLSL-----------LHTQDVLFVLNSKEVA-QAKKAMSCHRSQ 229
D+P L +++ +++ + Q A++ H SQ
Sbjct: 188 DMPEPDPAEAAAMAEIGLPDEEITTWVDTTSFSGQKFDALAAHASQ 233
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
Length = 303
Score = 133 bits (332), Expect = 4e-30
Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 26/141 (18%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN----------------YYNQG 85
R L V AHPDDE++ T+ V+++ + G G
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65
Query: 86 ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDP----------GMQWDTEHVARVLLQHI 135
R EL + LG+ + R + D L+ I
Sbjct: 66 GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125
Query: 136 EVNGINLVVTFDAGGVSGHSN 156
++VVT+D G GH +
Sbjct: 126 RELRPHVVVTYDPNGGYGHPD 146
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 131 bits (329), Expect = 8e-30
Identities = 31/173 (17%), Positives = 53/173 (29%), Gaps = 22/173 (12%)
Query: 28 MKSREQG---GRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY-- 82
M G R L V+AHPDD A + V + + G
Sbjct: 1 MTEPTITQLEPMPGDWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGID 60
Query: 83 -----NQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEV 137
R++E S V+G+ + + G+ + R + I
Sbjct: 61 TLAPAECAPLREREQRASAAVVGVSEVEFLDHRD-------GVVEYGTALRRDIAAAIRR 113
Query: 138 NGINLVVTF---DAGGV--SGHSNHIALYAAVRALHSEGKLPKGCSVLTLQSV 185
+ LV+T D G +H+A+ A ++ LT + +
Sbjct: 114 HRPELVITMNHRDTWGGVAWNTPDHVAVGRATLDAAADAGNRWIFPELTDRGL 166
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 131 bits (327), Expect = 1e-29
Identities = 38/193 (19%), Positives = 62/193 (31%), Gaps = 18/193 (9%)
Query: 40 ESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQG--ETRKKELLQSCD 97
L+V HPDD + T+ +L + G ++G E R+KE+ ++
Sbjct: 1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASR 60
Query: 98 VLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNH 157
+LG+ + + D P + L Q + +V F H +H
Sbjct: 61 ILGLDFRGNLGFPDGGLADVPEQRL-------KLAQALRRLRPRVV--FAPLEADRHPDH 111
Query: 158 IALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVA 217
A A L K V L Y S L + ++ E
Sbjct: 112 TAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVK--ISAFIDQWEA- 168
Query: 218 QAKKAMSCHRSQL 230
A+ +RSQ
Sbjct: 169 ----AVLAYRSQF 177
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 131 bits (327), Expect = 2e-29
Identities = 27/143 (18%), Positives = 52/143 (35%), Gaps = 22/143 (15%)
Query: 36 RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYY----------NQG 85
+ R L+V HPDDE + T+ + + ++ + G Y
Sbjct: 3 KSSCMRRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELI 62
Query: 86 ETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVT 145
E R++E L++ +LGI + ++ ++ +A L ++ V
Sbjct: 63 EIRRQEALRATKILGIDEVKFLNFEDSKVSEEDAE----NALAEFLREND--------VV 110
Query: 146 FDAGGVSGHSNHIALYAAVRALH 168
F H +H + AV L+
Sbjct: 111 FSPIPFDNHPDHANIGKAVEKLY 133
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 800
Score = 128 bits (320), Expect = 1e-28
Identities = 35/186 (18%), Positives = 60/186 (31%), Gaps = 36/186 (19%)
Query: 21 VWDSSERMKSREQGGRLGAESR----------TLLVIAHPDDEAMFFAPTVLGL-ARLRH 69
+ + ER++ + L R + AHPDDE + L
Sbjct: 1 MLNPRERIERQMADPWLIRLHRKLSALKSTVTVMHTGAHPDDEQ---NGLLAYFRTELGM 57
Query: 70 WVYLLCFSAGNYYN----------QGETRKKELLQSCDVLGIP-----LSSVMIIDNRDF 114
+ C + G G R +EL ++ V+ II + F
Sbjct: 58 RTIIACSTRGEGGQNALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGF 117
Query: 115 P---DDPGMQWDTEHVARVLLQHIEVNGINLVV-TF-DAGGVSGHSNHIALYAAVRALHS 169
D +W + L++ ++V+ TF D G GH H A+ A ++ +
Sbjct: 118 SKDGDQTFGRWGQNRIVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAMTRAAKSAIT 175
Query: 170 EGKLPK 175
P
Sbjct: 176 LAADPS 181
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 124
Score = 126 bits (316), Expect = 3e-28
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 56 FFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFP 115
FF+PT+ LA +++LC S GN G R EL ++C VL +PL + I+++ +
Sbjct: 7 FFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQ 66
Query: 116 DDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRAL 167
D G W + + ++ + + + I+ ++TFD GVSGH NH ++ V +
Sbjct: 67 DGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVLYV 118
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
Length = 185
Score = 125 bits (312), Expect = 9e-28
Identities = 42/156 (26%), Positives = 64/156 (40%), Gaps = 41/156 (26%)
Query: 56 FFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFP 115
FF+PT+ +++LCFS GN G R +EL ++C VL + + D
Sbjct: 51 FFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDKEGIC 105
Query: 116 DDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPK 175
D+ + EH ++TFD GV GH NH ++ V +
Sbjct: 106 DNDSCHCNEEH----------------IITFDNYGVWGHCNHRDVHRGVLYV-------- 141
Query: 176 GCSVLTLQSVNVLRKYISLLDLPLSLL----HTQDV 207
S+N+ RKY +D+ LS+L H V
Sbjct: 142 --------SLNIFRKYCGPVDIWLSILSAKRHPSKV 169
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
Length = 250
Score = 122 bits (306), Expect = 5e-27
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 11/127 (8%)
Query: 44 LLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQG--ETRKKELLQSCDVLGI 101
L AHPDD + T+L + V + +AG G ETR++E + + +G
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGY 72
Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALY 161
+ + + + T+ +++ I + V F H +H+
Sbjct: 73 VAREQLDLGDS-------ELFYTKESLHKIIRIIRKYRPDTV--FCNPPDERHPDHMKAS 123
Query: 162 AAVRALH 168
+
Sbjct: 124 RLIYEAC 130
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 122 bits (306), Expect = 5e-27
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 11/127 (8%)
Query: 44 LLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQG--ETRKKELLQSCDVLGI 101
L AHPDD + T+L + V + +AG G ETR++E + + +G
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGY 72
Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALY 161
+ + + + T+ +++ I + V F H +H+
Sbjct: 73 VAREQLDLGDS-------ELFYTKESLHKIIRIIRKYRPDTV--FCNPPDERHPDHMKAS 123
Query: 162 AAVRALH 168
+
Sbjct: 124 RLIYEAC 130
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
Length = 185
Score = 121 bits (302), Expect = 2e-26
Identities = 22/132 (16%), Positives = 45/132 (33%), Gaps = 10/132 (7%)
Query: 43 TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGET-RKKELLQSCDVLGI 101
L + AHPDD + ++ LA+ ++ + + GN G R +E + +LG
Sbjct: 19 ILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGC 78
Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGI---NLVVTFDAGGVSGHSNHI 158
+ + + + L I+ ++ + H +H+
Sbjct: 79 HQTIHLNFADTR------AHLQLNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHL 132
Query: 159 ALYAAVRALHSE 170
A+Y A
Sbjct: 133 AVYQASMVACRT 144
>pir||S44952 lmbE protein - Streptomyces lincolnensis
pir||S69814 lmbE protein - Streptomyces lincolnensis
emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
Length = 270
Score = 119 bits (296), Expect = 7e-26
Identities = 38/230 (16%), Positives = 65/230 (27%), Gaps = 39/230 (16%)
Query: 43 TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN--------------QGETR 88
L V AHPDDEA TV L+ + G R
Sbjct: 5 LLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVR 64
Query: 89 KKELLQSCDVLGIPLSSVMIIDNRDFPD-----DPGMQWDTEHVARVLLQHIEVNGINLV 143
EL S LG + + + ++ + A L + I ++V
Sbjct: 65 SAELDASARNLGYSAVHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPDVV 124
Query: 144 VTF-DAGGVSGHSNHIALYA-AVRALHSEGKLPK-GCSVLTLQSV----------NVLRK 190
+ + H +HI R + P + + V
Sbjct: 125 IGYGTNHTRDPHPDHIRANEVLTRRVDLLDHTPAVYHIAFSRRRHRALHQACVDSGVPSP 184
Query: 191 YISLLDLPLSLLHTQDVLFVLNSKE---VAQAKKAMSCHRSQL----LWF 233
Y L P + + +++ + V + A+ H +Q+ WF
Sbjct: 185 YEGGLSAPPGAFDDEWITTLVDVTKGDAVERRLDALRSHVTQVPPASGWF 234
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
Length = 218
Score = 116 bits (290), Expect = 3e-25
Identities = 35/189 (18%), Positives = 67/189 (34%), Gaps = 26/189 (13%)
Query: 43 TLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN-YYNQGETRKKELLQSCDVLGI 101
L+V+AHPDD + + A V + C + G + E R++E L + ++LG+
Sbjct: 4 VLVVVAHPDDAEIAMGMRIHWYALNGATVRVHCLTTGTPAPDGTEVRRQECLSAGELLGV 63
Query: 102 PLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALY 161
+ I + F ++ G + L +++ T H +H
Sbjct: 64 DQYTFSSIPDTRFVENRG------RINADLFDVFREARPDIIYTHYPD--DQHLDHSVTA 115
Query: 162 AAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKK 221
V + + LR + S P S+ + F ++ + +
Sbjct: 116 REVTTVAR-------------REAPNLRHFRS----PYSVGFEPNEFFFGTAELLEAKVR 158
Query: 222 AMSCHRSQL 230
A+ C SQ
Sbjct: 159 ALKCFASQT 167
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 292
Score = 113 bits (281), Expect = 3e-24
Identities = 30/144 (20%), Positives = 44/144 (29%), Gaps = 14/144 (9%)
Query: 46 VIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY--------YNQGETRKKELLQSCD 97
HPDDE + V + + G R+ E L++
Sbjct: 53 FAPHPDDETLGCGGVSAKKLASGVEVRFVFVTDGAASHRRLISPEELRSRRESEALEAVH 112
Query: 98 VLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNH 157
LG SV + FPD + + ++ +E V F S+H
Sbjct: 113 RLGASSESVTFLR---FPDAEASH-HIHAITKAIVPLLERWRPQSV--FVTHAKDPPSDH 166
Query: 158 IALYAAVRALHSEGKLPKGCSVLT 181
IA+ AAVRA P
Sbjct: 167 IAVNAAVRAALRWHGRPLTVFEYP 190
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
Length = 252
Score = 111 bits (277), Expect = 1e-23
Identities = 26/147 (17%), Positives = 46/147 (30%), Gaps = 20/147 (13%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGN-YYNQGE--------TRKKEL 92
R + V AHPDDE + T+ AR V L+ + G G+ R++
Sbjct: 2 RIMAVFAHPDDE-IGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHG 60
Query: 93 LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVS 152
D +G + + A L + + V+T+
Sbjct: 61 AWVADKIGA-KYHFFDMGDSRMTGGRDE-------ALQLARLYATFRPHAVITWSDD--H 110
Query: 153 GHSNHIALYAAVRALHSEGKLPKGCSV 179
H +H + ++PK +
Sbjct: 111 PHPDHRMTAKIAFDAVTLARIPKILNE 137
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
Length = 228
Score = 110 bits (273), Expect = 4e-23
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 24/196 (12%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAG---NYYNQGETRKK-ELLQSCD 97
RTL+V HPDDE + T+ LA V++ + G + + R + E Q+
Sbjct: 10 RTLVVAPHPDDEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATARIQAEARQAHR 69
Query: 98 VLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNH 157
LG+ + + + + + LL+ + V+ H +H
Sbjct: 70 ALGVTETIWLRLPAAQLAETAHATVN-----AALLELVHRLSPQTVLL--PFVGDMHMDH 122
Query: 158 IALYAAVRALHSEGKL--PKGCSVL-TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSK 214
+ + + PK TL N Y+S +P ++
Sbjct: 123 QLTFTSALVACRPHQAEFPKLVLAYETLSETNWNAPYLSPAFVP---------NVFVDIS 173
Query: 215 EVAQAK-KAMSCHRSQ 229
E +AK KAM SQ
Sbjct: 174 EHLEAKLKAMELFASQ 189
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
Length = 247
Score = 103 bits (256), Expect = 3e-21
Identities = 27/145 (18%), Positives = 45/145 (30%), Gaps = 9/145 (6%)
Query: 35 GRLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNY--YNQGETRKKEL 92
R L V+AHPDD + V V L + G R L
Sbjct: 11 SMPDDWRRALAVVAHPDDLEYGCSAAVASWVADGKDVAYLLATRGEAGIDTLDPGRAGPL 70
Query: 93 LQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTF---DAG 149
++ V ++ D D + + R + + + LV+T D
Sbjct: 71 REAEQRAAAAAVGVRAVEFLDHRDG--VIEYGASLRRDIAAAVRRHRPELVITLNHRDTW 128
Query: 150 --GVSGHSNHIALYAAVRALHSEGK 172
G +H+A+ AV ++
Sbjct: 129 AAGAWNTPDHVAVGRAVLDAAADAG 153
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 229
Score = 103 bits (255), Expect = 4e-21
Identities = 38/194 (19%), Positives = 60/194 (30%), Gaps = 35/194 (18%)
Query: 42 RTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYN------QGETRKKELLQS 95
+ L + AHPDD +F T+ A + + G R++E +
Sbjct: 2 KILALGAHPDDIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAA 61
Query: 96 CDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHS 155
L + + G + L I G +LV+T H+
Sbjct: 62 -AGLLGAAPRFLDFPD-------GELVADAALIGALKTLIAGTGPDLVITHAPNDY--HA 111
Query: 156 NHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKE 215
+H AL +VR S VL ++ S H D+ K
Sbjct: 112 DHRALSDSVRIAASFA-----VPVLHAD---------TMGGTGFSPTHYVDISAHAEIK- 156
Query: 216 VAQAKKAMSCHRSQ 229
KA+ H+SQ
Sbjct: 157 ----AKAIRMHQSQ 166
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
Length = 232
Score = 100 bits (248), Expect = 3e-20
Identities = 37/197 (18%), Positives = 68/197 (33%), Gaps = 26/197 (13%)
Query: 45 LVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGE----------TRKKELLQ 94
+V HPDDEA+ + LA V+ L + G + + R E +
Sbjct: 15 VVAPHPDDEALGCGALLAALAEAGREVWALLLTDGGFSHPASKAYPRPRLSAVRLAEWRE 74
Query: 95 SCDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGH 154
VLG+P + + + PD + T + Q V+ H
Sbjct: 75 GLSVLGVPPARTVAL---GLPDGALGEHLTAAARAQVRQAFAQARPGTVLL--PWERDPH 129
Query: 155 SNHIALYAAVRALH-SEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNS 213
+H A + +R + S+ + L + + D P + V +
Sbjct: 130 PDHRAAWHLLRGVLPSDTLALEYAVWLPERGAD--------ADWPRPDEVEELTFAVGDW 181
Query: 214 KEVAQAKKAMSCHRSQL 230
++ +A++ HR+QL
Sbjct: 182 RDAKA--RAIASHRTQL 196
>ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
pir||A75600 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12252.1|AE001862_78 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
Length = 350
Score = 86.3 bits (212), Expect = 4e-16
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 9 VALAVLAWGFLWVWDSSERMK---SREQGGRLG------AESRTLLVIAHPDDEAMFFAP 59
V +AV+ G +S + Q RL A R LL+ HPDDE +
Sbjct: 20 VVIAVVGLGLAAWINSPLVARWFGGERQVARLAGTPPFRAGQRVLLLAPHPDDETLCCGG 79
Query: 60 TVLGLARLRHWVYLLCFSAG-------------------NYYNQGETRKKELLQSCDVLG 100
TV V++ +AG N G+TR E ++ VLG
Sbjct: 80 TVQQARAAGAEVFIAWMTAGDGFEFDAALTEHVLVPRPHNMRALGQTRAGEAERAAAVLG 139
Query: 101 I--PLSSVMIIDNRDF 114
+ + ++ +
Sbjct: 140 VPADHTFMLGYPDGGL 155
>pir||D69906 hypothetical protein yojG - Bacillus subtilis
emb|CAB13838.1| (Z99114) yojG [Bacillus subtilis]
gb|AAC17855.1| (AF026147) YojG [Bacillus subtilis]
Length = 142
Score = 83.6 bits (205), Expect = 3e-15
Identities = 38/124 (30%), Positives = 54/124 (42%), Gaps = 24/124 (19%)
Query: 113 DFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDA-GGVSGHSNHIALYAAV-RALHSE 170
D D E++A ++ + I+ +L+VTF GV H +H A AV RAL+ +
Sbjct: 3 GLRDKTLEFEDDEYLADIMEEIIDDVKPSLIVTFYPGHGV--HPDHDACGEAVIRALYRK 60
Query: 171 GK--LPKG-CSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAK-KAMSCH 226
K P+ C +T V L DV VL+ KEVA K A+ H
Sbjct: 61 KKEDRPRTICMAITRNREEV--------------LGEADV--VLDIKEVADIKMNALRAH 104
Query: 227 RSQL 230
R+Q
Sbjct: 105 RTQT 108
CPU time: 74.55 user secs. 2.32 sys. secs 76.87 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.317 0.177 0.515
Gapped
Lambda K H
0.270 0.0621 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183394144
Number of Sequences: 887402
Number of extensions: 9064274
Number of successful extensions: 38493
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 38224
Number of HSP's gapped (non-prelim): 153
length of query: 252
length of database: 277,845,442
effective HSP length: 52
effective length of query: 200
effective length of database: 231,700,538
effective search space: 46340107600
effective search space used: 46340107600
T: 11
A: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.8 bits)
S2: 73 (32.4 bits)
