Sequences with E-value BETTER than threshold (0.002) 281 7e-75
193 2e-48
182 6e-45
180 1e-44
176 3e-43
171 1e-41
158 9e-38
156 3e-37
154 1e-36
148 8e-35
147 1e-34
146 3e-34
138 8e-32
138 1e-31
137 1e-31
137 2e-31
135 6e-31
135 1e-30
131 1e-29
129 3e-29
129 6e-29
127 2e-28
125 6e-28
124 1e-27
124 1e-27
122 4e-27
121 9e-27
119 3e-26
119 5e-26
119 6e-26
119 6e-26
118 7e-26
118 1e-25
116 3e-25
113 3e-24
110 2e-23
110 2e-23
108 8e-23
108 1e-22
106 3e-22
101 1e-20
97 2e-19
97 2e-19
96 5e-19
96 6e-19
86 5e-16
84 3e-15
79 7e-14
74 2e-12
Alignments
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
Length = 223
Score = 281 bits (713), Expect = 7e-75
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFST 60
MVVVFLSLIVVIWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFST
Sbjct: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFST 60
Query: 61 GNADGMGSIRDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHIITFDNYGVWGHCNHRD 120
GNADGMGSIRDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHIITFDNYGVWGHCNHRD
Sbjct: 61 GNADGMGSIRDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHIITFDNYGVWGHCNHRD 120
Query: 121 VHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPW 180
VHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPW
Sbjct: 121 VHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPW 180
Query: 181 KSFKAMAQHLSQWVWFRKLFVLFSSYTYVNTLDRINPESNELL 223
KSFKAMAQHLSQWVWFRKLFVLFSSYTYVNTLDRINPESNELL
Sbjct: 181 KSFKAMAQHLSQWVWFRKLFVLFSSYTYVNTLDRINPESNELL 223
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
Length = 252
Score = 193 bits (488), Expect = 2e-48
Identities = 66/214 (30%), Positives = 103/214 (47%), Gaps = 28/214 (13%)
Query: 25 TSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACA 79
+ SRA ++ D+ FF+PTI + +LCFS+GN G IR +EL ++CA
Sbjct: 38 GAGSRALVVIAHPDDEAMFFAPTILGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCA 97
Query: 80 VLKVIP-----FDKEGICDNDSCHCNEEH----------------IITFDNYGVWGHCNH 118
VL + P DK D+ + EH ++TFD GV GH NH
Sbjct: 98 VLGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNH 157
Query: 119 RDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQ 178
++ + K G + S+N+ RKY +D+ ++LS + + +K+
Sbjct: 158 IALYKAVRALHSGGKLPEGCSVLTLQSVNVLRKYVFLLDLPWTLLSPQGVLFVL--TSKE 215
Query: 179 PWKSFKAMAQHLSQWVWFRKLFVLFSSYTYVNTL 212
++ KAM+ H SQ +WFR L+ +FS Y VN+L
Sbjct: 216 VAQAKKAMSCHRSQLLWFRHLYTVFSRYMSVNSL 249
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
Length = 185
Score = 182 bits (458), Expect = 6e-45
Identities = 151/185 (81%), Positives = 152/185 (81%), Gaps = 29/185 (15%)
Query: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATILDDGK-------------FFSPTINYFT 47
MVVVFLSLIVVIWVASFFKIFFRATSISRATILDDGK FFSPTINYFT
Sbjct: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATILDDGKEEKCDVFMDMLDRFFSPTINYFT 60
Query: 48 STACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHIITF 107
STACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHIITF
Sbjct: 61 STACNLHILCFSTGNADGMGSIRDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHIITF 120
Query: 108 DNYGVWGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKR 167
DNYGVWGHCNHRDVH + VSLNIFRKYCGPVDIWLSILSAKR
Sbjct: 121 DNYGVWGHCNHRDVHRGVL----------------YVSLNIFRKYCGPVDIWLSILSAKR 164
Query: 168 HPSKV 172
HPSKV
Sbjct: 165 HPSKV 169
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
Length = 390
Score = 180 bits (455), Expect = 1e-44
Identities = 58/248 (23%), Positives = 92/248 (36%), Gaps = 59/248 (23%)
Query: 29 RATIL-----DDGKFFSPTINYFT-STACNLHILCFSTGN-------------------- 62
R ++ D+ FF P I T C ++ILC S G
Sbjct: 141 RVLLITAHPDDECMFFGPLIYSLTQRQGCQVYILCLSNGETTSSDIIPKPPIDLEALNES 200
Query: 63 -ADGMGSIRDQELHRACAVLKVIP-----FDKEGICDNDSCHCNE--------------- 101
+ +R QEL R+C+ L + + + D+
Sbjct: 201 NFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVASLILHTIESLD 260
Query: 102 -EHIITFDNYGVWGHCNHRDVHPPIDCKI-----DSAKRIHGFLYVHQVSLNIFRKYCGP 155
+ I TFD GV H NH V+ + + Y S+N+ RKY
Sbjct: 261 IQAIFTFDRDGVSSHPNHCAVYYAAASLCLANLLPKGEEAYCKFYTLD-SINVVRKYLSI 319
Query: 156 VDIWLSILSAKRHPSKVIIIN-KQPWKSFKAMAQHLSQWVWFRKLFVLFSSYTYVNTLDR 214
+D+ + + + I+N K+ AM +H SQ WFR L++ FS Y ++N++ +
Sbjct: 320 LDLLCTCFMS----THWCILNWKEAAIVRSAMMEHQSQMRWFRWLYIYFSRYMFINSMRQ 375
Query: 215 INPESNEL 222
IN EL
Sbjct: 376 INLSDVEL 383
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
Length = 252
Score = 176 bits (444), Expect = 3e-43
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 23 RATSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRA 77
R + SR ++ D+ FF+PT+ +++LCFS GN G R +EL ++
Sbjct: 36 RLGAESRTLLVIAHPDDEAMFFAPTVLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQS 95
Query: 78 CAVLKVI-----PFDKEGICDNDSCHCNEEH----------------IITFDNYGVWGHC 116
C VL + D D+ + EH ++TFD GV GH
Sbjct: 96 CDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHS 155
Query: 117 NHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIIN 176
NH ++ + K G + S+N+ RKY +D+ LS+L + + +
Sbjct: 156 NHIALYAAVRALHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLN--S 213
Query: 177 KQPWKSFKAMAQHLSQWVWFRKLFVLFSSYTYVNTL 212
K+ ++ KAM+ H SQ +WFR+L+++FS Y +N+L
Sbjct: 214 KEVAQAKKAMSCHRSQLLWFRRLYIIFSRYMRINSL 249
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
deacetylase [Schizosaccharomyces pombe]
Length = 248
Score = 171 bits (430), Expect = 1e-41
Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 34 DDGKFFSPTINYFTST-ACNLHILCFSTGNADGMGSIRDQELHRACAVLKV--------- 83
D+ FF PTI+Y + + +H+LC S GNADG+GS+R++EL A + ++
Sbjct: 43 DESMFFGPTIDYLGNQHSTRVHVLCLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVS 102
Query: 84 IPFDKEGI---CD-NDSCHCNEEHI--------ITFDNYGVWGHCNHRDVHPPIDCKIDS 131
P ++G+ D D + I ITFDN G+ GH NH + + +
Sbjct: 103 DPQLQDGMQAKWDPTDVAKHISQIIERYNIKTLITFDNKGISGHPNHIACYEGAMKIVKA 162
Query: 132 AKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIIN---KQPWKSFKAM-A 187
+ S+NIFRKY +D +++ ++ + III+ K + AM
Sbjct: 163 TPQ---VQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVR 219
Query: 188 QHLSQWVWFRKLFVLFSSYTYVNTLDR 214
H SQ VWFR ++ S Y N L R
Sbjct: 220 GHKSQMVWFRYGWIYLSKYMSNNVLKR 246
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 267
Score = 158 bits (397), Expect = 9e-38
Identities = 29/192 (15%), Positives = 50/192 (25%), Gaps = 34/192 (17%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNAD---------GMGSIRDQELHRACAVLKVI 84
D TI T + C + G + +IR +E + +L V
Sbjct: 43 DCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELATIRRREEEESSKLLGVK 102
Query: 85 PFDKEGICDNDS---CHCNEEHII---------TFDNY---GVWGHCNHRDVHPPIDCKI 129
D + ++ + F H +HR+ +
Sbjct: 103 KIYWLNYRDTELPYSREVRKDLVRIIRKEKPDGVFLPDPWLPYEAHPDHRNTGFLALDAV 162
Query: 130 DSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQH 189
+ + S GP + L P+ + I KA+ H
Sbjct: 163 AFSPLPN-------FSNVDVEIGLGPHQVSFIALYYTNKPNYFVDITDVMELKLKAIRTH 215
Query: 190 LSQW---VWFRK 198
SQ+ VW
Sbjct: 216 KSQFPDDVWEVW 227
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 156 bits (393), Expect = 3e-37
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 33/192 (17%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNAD---------GMGSIRDQELHRACAVLKVI 84
D TI + + +C + G + +IR +E + +L V
Sbjct: 47 DCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSGHELAAIRRKEEEESARLLGVK 106
Query: 85 PFDKEGICDNDSCHCN------------EEHIITFDNY---GVWGHCNHRDVHPPIDCKI 129
D + + E+ F H +HR +
Sbjct: 107 KIYWLNYRDTELPYSREVRKDLTKILRKEQPDGVFAPDPWLPYESHPDHRRTGFLAIESV 166
Query: 130 DSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQH 189
++ + + LN + L P+ ++ I KA+ H
Sbjct: 167 AFSQLPNFSNTDLDIGLNPYNSGSF------IALYYTHKPNYIVDITDLMELKLKAIRVH 220
Query: 190 LSQW---VWFRK 198
SQ+ +W +
Sbjct: 221 RSQFPDDIWEKW 232
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 267
Score = 154 bits (387), Expect = 1e-36
Identities = 26/192 (13%), Positives = 50/192 (25%), Gaps = 34/192 (17%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNAD---------GMGSIRDQELHRACAVLKVI 84
D TI + + +C + G + IR +E + +L V
Sbjct: 43 DCAIGMGGTIKKLSDEGVEVIYICMTDGYMGTTDEKLSGHELALIRRREEEESAKLLGVR 102
Query: 85 PFDKEGICDNDS---CHCNEEHI---------ITFDNY---GVWGHCNHRDVHPPIDCKI 129
D + ++ + F H +HR +
Sbjct: 103 KIYWLNYRDTELPYSREVRKDLVKIIRKEKPDGVFAPDPWLPYESHPDHRRTGFLAIESV 162
Query: 130 DSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQH 189
++ + S P + L P+ ++ I KA+ H
Sbjct: 163 AFSQLPN-------FSNIDIDIGLKPHSVSFIALYYTHKPNYIVDITDLMELKLKAIRAH 215
Query: 190 LSQW---VWFRK 198
SQ+ +W
Sbjct: 216 RSQFTDDIWETW 227
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 148 bits (372), Expect = 8e-35
Identities = 35/203 (17%), Positives = 58/203 (28%), Gaps = 49/203 (24%)
Query: 27 ISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNAD------------GMGSI 69
++ D+ S TI F + C + G + I
Sbjct: 4 ERHVLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESLPDI 63
Query: 70 RDQELHRACAVLKVIPFDKEGICD----------------NDSCHCNEEHIITFDNYGVW 113
R +EL ++ + + G D + N IITF G
Sbjct: 64 RKKELIKSAEAMGIEDLRMLGYRDKTIEFEDETKLTDMVSDLMAELNPSLIITF-YPGYS 122
Query: 114 GHCNHRDVHPPIDCKIDS-AKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKV 172
H +H + + K + LY S N ++ G DI +
Sbjct: 123 VHPDHEATGRAVVRAVRRLEKSMRPKLYGVAFS-NGHQEELGDPDI-------------L 168
Query: 173 IIINKQPWKSFKAMAQHLSQWVW 195
I+ + A+ H+SQ W
Sbjct: 169 FDISPVAEQKKAAIRAHISQTAW 191
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
cerevisiae)
emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
Length = 304
Score = 147 bits (370), Expect = 1e-34
Identities = 65/235 (27%), Positives = 95/235 (39%), Gaps = 55/235 (23%)
Query: 34 DDGKFFSPTINYFTS---TACNLHILCFSTGNADGMGSIRDQELHRACAVL--------- 81
D+ FFSP I+ S +I+C S GNA+G+G R +EL+ + A+L
Sbjct: 66 DEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHNERAVSV 125
Query: 82 KVIPFD--KEGICDNDSC------------HCNEEHIITFDNYGVWGHCNHRDVHPPIDC 127
+V+ F + I D DS H + I+TFD+YGV H NH+ + +
Sbjct: 126 QVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCYAAVKK 185
Query: 128 KIDSAKRIHGF----------LYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVII--- 174
+D + LY+ NI KY + L IL P + II
Sbjct: 186 LVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRRIIQAL 245
Query: 175 ---------------INKQPWKSFKAM-AQHLSQWVWFRKLFVLFSSYTYVNTLD 213
+ Q +F M H SQ VWFR + +FS + +VN D
Sbjct: 246 PPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVNEFD 300
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75517 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
Length = 281
Score = 146 bits (367), Expect = 3e-34
Identities = 35/223 (15%), Positives = 67/223 (29%), Gaps = 53/223 (23%)
Query: 24 ATSISRATIL-------DDGKFFSPTINYFTSTACNLHILCFSTGNAD----------GM 66
+T RAT+L D+ T+ ++ + + C + G A +
Sbjct: 5 STPAPRATLLVIFAHPDDEAFSVGGTLTHYARQGVRVVLACATRGEAGKITVPGMTVDDL 64
Query: 67 GSIRDQELHRACAVLKVIPFDKEGICDND----------------------------SCH 98
G+ R+QEL AC L++ P D+
Sbjct: 65 GAQREQELREACRALEIEPPVFLDYHDSGRYERTRHDDPTALMNVNPLDAEVKLRALIED 124
Query: 99 CNEEHIITFDNYGVWGHCNHRDVHPPIDCK-IDSAKRIHGFLYVHQVSLNIFR-----KY 152
+ I+TFD +G +GH +H +H + G + +
Sbjct: 125 VQPQVIVTFDPHGAYGHVDHLQMHRATVAAFFSTGHLPSGGPQRLYYTAMTHQAAAQISR 184
Query: 153 CGPVDIWLSILS--AKRHPSKVIIINKQPWKSFKAMAQHLSQW 193
G ++ + + + + A+A H +Q
Sbjct: 185 LGHDQSLDPLVYGVSDSTLAVTMDVGAYAENKKAALAAHGTQM 227
>ref|NP_385870.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC46343.1| (AL591788) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 244
Score = 138 bits (346), Expect = 8e-32
Identities = 26/219 (11%), Positives = 46/219 (20%), Gaps = 53/219 (24%)
Query: 25 TSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSI---------- 69
++ D I + ++C S G +
Sbjct: 1 MHQKTGLVVSAHSADFVWRAGGAIAAHARQGYAVTVVCLSFGERGESAKLWKKSGMTLET 60
Query: 70 ----RDQELHRACAVLKVIPFDKEGICD--------------NDSCHCNEEHIITF---D 108
R +E A L V + D + E ++T D
Sbjct: 61 VKADRRREAENAAKALGVHDILFYDLGDYPIQVTPEAFDRLVDLYREIRPEFMLTHSRQD 120
Query: 109 NYGVWGHC--NHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAK 166
Y H H + + K L Y
Sbjct: 121 PYNFD-HPMATEFAQHARVIAQAHGHKPSTPVL-----GAPPV--YLFEPHQPEQC---N 169
Query: 167 RHPSKVIIINKQPWKSFKAMAQHLSQWVWFRKLFVLFSS 205
P+ ++ I K A+ Q L+ ++
Sbjct: 170 WKPNFLLDITDVWEKKLAAIKCMEGQ----EHLWEYYTR 204
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
Length = 288
Score = 138 bits (345), Expect = 1e-31
Identities = 29/264 (10%), Positives = 61/264 (22%), Gaps = 91/264 (34%)
Query: 25 TSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADG-------------- 65
S R + D+ + T+ + + ++ + G
Sbjct: 1 MSELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGR 60
Query: 66 MGSIRDQELHRACAVLKVIPFDKEGICDNDS----------------------------- 96
+ IR E+ +A +L V G D+
Sbjct: 61 IAEIRRDEMTKAAEILGVEHT-WLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRV 119
Query: 97 -CHCNEEHIITFDNYGVWGHCNHRDVHPPIDCKIDS---------AKRIHGFLYVHQV-- 144
+ T+D G + H +H H ++ A ++ V
Sbjct: 120 VREFRPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGDFCRFPDAGEPWTVSKLYYVHG 179
Query: 145 -----------------SLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMA 187
F ++ D + + +K + A+
Sbjct: 180 FLRERMQMLQDEFARHGQRGPFEQWLAYWD--PDHDFLTSRVTTRVECSKYFSQRDDALR 237
Query: 188 QHLSQ-----------WVWFRKLF 200
H +Q W +L+
Sbjct: 238 AHATQIDPNAEFFAAPLAWQERLW 261
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 221
Score = 137 bits (344), Expect = 1e-31
Identities = 37/206 (17%), Positives = 59/206 (27%), Gaps = 49/206 (23%)
Query: 25 TSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNAD------------GMG 67
T ++ D+ + T+ + + C + G +
Sbjct: 2 TDERHVLVIFPHPDDETFSSAGTLASYIQKGIPVTYACLTLGQMGRNLGNPPFATRESLP 61
Query: 68 SIRDQELHRACAVLKVIPFDKEGICD-----NDSCHCN-----------EEHIITFDNYG 111
SIR++EL AC V+ + K G+ D H + II+F G
Sbjct: 62 SIRERELEEACKVIGITDLRKMGLRDKTVEFEPYEHIDGMIKSLIDDTNPSLIISF-YPG 120
Query: 112 VWGHCNHRDVHPPIDCKIDS-AKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPS 170
H +H + ++ K L + S N + G DI
Sbjct: 121 YAVHPDHEATADAVIRTVERMPKEERPRLTLVAFS-NDATEALGEPDIQN---------- 169
Query: 171 KVIIINKQPWKSFKAMAQHLSQWVWF 196
I KA H SQ F
Sbjct: 170 ---DITDFKELKIKAFEAHASQTGPF 192
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
Length = 293
Score = 137 bits (343), Expect = 2e-31
Identities = 32/254 (12%), Positives = 62/254 (23%), Gaps = 82/254 (32%)
Query: 25 TSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADG-------------- 65
T R + D+ + T+ + S ++ ++ + G
Sbjct: 2 TDQLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIEE 61
Query: 66 -MGSIRDQELHRACAVLKVIPFDKEGICDNDSCH-------------------------- 98
+ +R +E+ A +L V + G D+
Sbjct: 62 NIHEVRRKEMDEAREILGVG-QEWLGFVDSGLPEGDPLPPLPEGCFALEDVDKAAGELVR 120
Query: 99 ----CNEEHIITFDNYGVWGHCNHRDVHPPIDCKIDS--------------AKRIHGFLY 140
+ I T+D G + H +H H + A + Y
Sbjct: 121 KIRSFRPQVITTYDENGGYPHPDHIMTHKITMVAFEGAADTEKYPESEYGTAYQPLKVYY 180
Query: 141 VHQVSLNIFR-------------KYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMA 187
+ Y + W +R + + KA+
Sbjct: 181 NQGFNRPRTEALHHALLDRGLESPYEDWLKRWSEFERKERTLTTHVPCADFFEIRDKALI 240
Query: 188 QHLSQW----VWFR 197
H +Q WFR
Sbjct: 241 AHATQIDPEGGWFR 254
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 135 bits (339), Expect = 6e-31
Identities = 27/196 (13%), Positives = 51/196 (25%), Gaps = 36/196 (18%)
Query: 12 IWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNADGMG--SI 69
+ V + D T+ + + IL + G G
Sbjct: 4 LLVVAPHPD-------------DGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEE 50
Query: 70 RDQELHRACAVLKVIPFDKEGICDNDSCHCNEEHI------------ITFDNYGVWGHCN 117
R++E+ A +L + G D E+ + + F H +
Sbjct: 51 REKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLEADRHPD 110
Query: 118 HRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINK 177
H + A L + Y G PS ++ I+
Sbjct: 111 HTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHP---------FAPSFLVKISA 161
Query: 178 QPWKSFKAMAQHLSQW 193
+ A+ + SQ+
Sbjct: 162 FIDQWEAAVLAYRSQF 177
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75562 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
Length = 237
Score = 135 bits (337), Expect = 1e-30
Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 41/191 (21%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNAD----------GMGSIRDQELHRACAVLKV 83
D+ S T+ + + + ++ + G A + +R EL V+ +
Sbjct: 24 DEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCDGPEELARMRAVELAACLEVIGL 83
Query: 84 -------------IPFDKEGICDNDS--------CHCNEEHIITFDNYGVWGHCNHRDVH 122
+ + E ++TF G GH +H H
Sbjct: 84 TTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLRPETVLTFPPNGSNGHPDHMTTH 143
Query: 123 PPIDCKIDSAK-RIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWK 181
+ D L+ + + + P+ ++ +
Sbjct: 144 RAVKAAWDRLPAGSRPVLWYYASETPPENEELRAAWLP---------PTVKRDVSALVTR 194
Query: 182 SFKAMAQHLSQ 192
+A+A H SQ
Sbjct: 195 KLQAIACHRSQ 205
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 131 bits (327), Expect = 1e-29
Identities = 21/183 (11%), Positives = 45/183 (24%), Gaps = 40/183 (21%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMG--SIRDQELHRACAVLKVIPFDKEGI 91
D T+ ++ + I + G R +E A +L + + +
Sbjct: 15 DVEIGMGATLYHYRQKGHRVGICNLTKAELSSNGTVEQRQKEAADASRILGIDERIQLDL 74
Query: 92 CDNDSC-----HCNE--------EHIITFDNYGVWGHCNHRDVHPPIDCK--------ID 130
D + F Y V H +H +
Sbjct: 75 PDRGLRNPSEQQVRNIVSVIRHCQPTFVFVPYPVDRHPDHGHCAELVKEAVFNARIRNYK 134
Query: 131 SAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQHL 190
+ H + +N F + P ++ ++ A+ +
Sbjct: 135 AEGGAHHVQDLFYYMINSFER-----------------PDLLVDVSHCYEVKQAALNAYK 177
Query: 191 SQW 193
SQ+
Sbjct: 178 SQF 180
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
Length = 290
Score = 129 bits (324), Expect = 3e-29
Identities = 32/264 (12%), Positives = 68/264 (25%), Gaps = 91/264 (34%)
Query: 25 TSISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADG-------------- 65
S R + D+ + T+ + + ++ + G
Sbjct: 1 MSELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGH 60
Query: 66 MGSIRDQELHRACAVLKVIPFDKEGICDND------------------------------ 95
+ IR E+ +A +L V G D+
Sbjct: 61 IAEIRRDEMAKAAEILGVEHT-WLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRV 119
Query: 96 SCHCNEEHIITFDNYGVWGHCNHRDVHPPIDCKIDS---------AKRIHGFLYVHQVSL 146
+ T+D G + H +H H ++ A + ++
Sbjct: 120 VRKFRPHVLTTYDENGGYPHPDHIRCHQVSVDAYEAACDYRRFPDAGKPWTVSKLYY--N 177
Query: 147 NIFRKY--------------CGPVDIWLSILSAKRHP-----SKVIIINKQPWKSFKAMA 187
+ F + GP D WL+ + P + + + + A+
Sbjct: 178 HGFLRARMQLLHDEFAKHGQAGPFDKWLAQSNPAHDPFESRVTTRVECSAYFSQRDDALR 237
Query: 188 QHLSQ-----------WVWFRKLF 200
H +Q W ++L+
Sbjct: 238 AHATQIDPKAEFFAAPISWQQRLW 261
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
Length = 228
Score = 129 bits (322), Expect = 6e-29
Identities = 24/199 (12%), Positives = 44/199 (22%), Gaps = 38/199 (19%)
Query: 14 VASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGN---ADGMGSIR 70
V + D+ TI + + + + G D + R
Sbjct: 13 VVAPHPD-------------DEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATAR 59
Query: 71 DQ-ELHRACAVLKVIPFDKEGICDNDSCH--------------CNEEHIITFDNYGVWGH 115
Q E +A L V + + H
Sbjct: 60 IQAEARQAHRALGVTETIWLRLPAAQLAETAHATVNAALLELVHRLSPQTVLLPFVGDMH 119
Query: 116 CNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIII 175
+H+ + L + + + LS P+ + I
Sbjct: 120 MDHQLTFTSALVACRPHQAEFPKLVLAYET-------LSETNWNAPYLSPAFVPNVFVDI 172
Query: 176 NKQPWKSFKAMAQHLSQWV 194
++ KAM SQ
Sbjct: 173 SEHLEAKLKAMELFASQVR 191
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
proteins [Bacillus subtilis]
sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 127 bits (317), Expect = 2e-28
Identities = 29/186 (15%), Positives = 54/186 (28%), Gaps = 41/186 (22%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMG--SIRDQELHRACAVLKVIPFDKEGI 91
D TI F + I + G S+R +E A +L + +
Sbjct: 15 DVEIGMGGTIAKFVKQEKKVMICDLTEAELSSNGTVSLRKEEAAEAARILGADKRIQLTL 74
Query: 92 CDNDSCHCN--EEHIIT----------FDNYGVWGHCNHRDVHPPIDCKI---------- 129
D + I+T F Y H +H + ++ I
Sbjct: 75 PDRGLIMSDQAIRSIVTVIRICRPKAVFMPYKKDRHPDHGNAAALVEEAIFSAGIHKYKD 134
Query: 130 DSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQH 189
+ + H V+ +N F + P VI I+ +++ +
Sbjct: 135 EKSLPAHKVSKVYYYMINGFHQ-----------------PDFVIDISDTIEAKKQSLNAY 177
Query: 190 LSQWVW 195
SQ++
Sbjct: 178 KSQFIP 183
>ref|NP_403747.1| (NC_003143) hypothetical protein [Yersinia pestis]
emb|CAC88949.1| (AJ414141) hypothetical protein [Yersinia pestis]
Length = 310
Score = 125 bits (313), Expect = 6e-28
Identities = 30/217 (13%), Positives = 52/217 (23%), Gaps = 52/217 (23%)
Query: 26 SISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQ-------- 72
A ++ D I +HI+C S G + +
Sbjct: 70 PQKTALVVSAHSADFVWRAGGAIALHVEQGYQVHIVCLSYGERGESAKLWRKGDMTEERV 129
Query: 73 ------ELHRACAVLK--VIPFDKEGIC---DNDS--------CHCNEEHIITF---DNY 110
E A VL + FD D +S ++T D Y
Sbjct: 130 KASRHTEAQAAANVLGASIEFFDMGDYPLRADKESLFRLADVFRRIQPHFVLTHSLADPY 189
Query: 111 GVWGHC--NHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRH 168
H + I + + R + + YC
Sbjct: 190 NYD-HPLAANLAQEARIIAQAE-GYRPGEAI----IGAPPV--YCFEPHQPEQCG---WK 238
Query: 169 PSKVIIINKQPWKSFKAMAQHLSQWVWFRKLFVLFSS 205
P ++ I K + A+ Q L+ ++
Sbjct: 239 PDVLLDITSVWEKKYAAIQCMAGQ----EHLWEYYTR 271
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 124 bits (311), Expect = 1e-27
Identities = 28/190 (14%), Positives = 52/190 (26%), Gaps = 47/190 (24%)
Query: 28 SRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNAD----------GMGSIRDQ 72
R I+ D+ TI F + ++ + G + IR Q
Sbjct: 8 RRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRRQ 67
Query: 73 ELHRACAVLKVIPFDKEGICDN---------DSCHCNEEHIITFDNYGVWGHCNHRDVHP 123
E RA +L + D+ E+ + F H +H ++
Sbjct: 68 EALRATKILGIDEVKFLNFEDSKVSEEDAENALAEFLRENDVVFSPIPFDNHPDHANIGK 127
Query: 124 PIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSF 183
++ +A +L +N I K
Sbjct: 128 AVEKLYPNAY---FYLIWGNTQVNW--------------------REVKFDIRKYKESKL 164
Query: 184 KAMAQHLSQW 193
+A+ Q++SQ
Sbjct: 165 RAINQYISQI 174
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
Length = 277
Score = 124 bits (311), Expect = 1e-27
Identities = 25/241 (10%), Positives = 57/241 (23%), Gaps = 71/241 (29%)
Query: 10 VVIWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNAD----- 64
+ + D+ + + + ++ + G
Sbjct: 6 LTLMAVHAHPD-------------DEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGG 52
Query: 65 -----------GMGSIRDQELHRACAVLKVIPFDKEGICDND------------------ 95
+ +R +EL + +LK+ + D+
Sbjct: 53 VKPGDPGHDPAAVALMRRRELEESRDILKISDLETLDYADSGMMGWPSNDAPGSFWRTPV 112
Query: 96 ----------SCHCNEEHIITFDNYGVWGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVS 145
H + ++T+D G +GH +H H ++ +
Sbjct: 113 EEGAARLAELMRHYRPDVVVTYDENGFYGHPDHIQAHRITMAALEMTTLTPKVYWTTAPR 172
Query: 146 LNIFRKY----CGPVDIWLS----------ILSAKRHPSKVIIINKQPWKSFKAMAQHLS 191
+ R D+ I + + + F A+A H S
Sbjct: 173 SMMQRFGEIMREFHPDMPEPDPAEAAAMAEIGLPDEEITTWVDTTSFSGQKFDALAAHAS 232
Query: 192 Q 192
Q
Sbjct: 233 Q 233
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
Length = 221
Score = 122 bits (306), Expect = 4e-27
Identities = 30/209 (14%), Positives = 49/209 (23%), Gaps = 57/209 (27%)
Query: 14 VASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNAD--------- 64
V D+ + I + C + G
Sbjct: 7 VILPHPD-------------DESYGVAGLIALNRKKDIPVTYACATLGEMGRNMGDPFFA 53
Query: 65 ---GMGSIRDQELHRACAVLKVIPFDKEGIC--------DNDSCHCNEEH--------II 105
+ +R QEL AC + + G+ D EE I+
Sbjct: 54 NRETLPLLRKQELINACKEMDINDLRMLGLRDKTLEFEDDEYLADIMEEIIDDVKPSLIV 113
Query: 106 TFDNYGVWGHCNHRDVHPPIDCK-IDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILS 164
TF G H +H + K ++ N + G D
Sbjct: 114 TF-YPGHGVHPDHDACGEAVIRALYRKKKEDRPRTICMAITRNR-EEVLGEAD------- 164
Query: 165 AKRHPSKVIIINKQPWKSFKAMAQHLSQW 193
V+ I + A+ H +Q
Sbjct: 165 ------VVLDIKEVADIKMNALRAHRTQT 187
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 121 bits (303), Expect = 9e-27
Identities = 26/203 (12%), Positives = 54/203 (25%), Gaps = 39/203 (19%)
Query: 22 FRATSI--SRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNAD-------GMG 67
RA + D + I +T + + + G A
Sbjct: 9 LEPMPGDWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGIDTLAPAECA 68
Query: 68 SIRDQELHRACAVLKVIPFDKEGICDN--------------DSCHCNEEHIITF---DNY 110
+R++E + AV+ V + D E +IT D +
Sbjct: 69 PLREREQRASAAVVGVSEVEFLDHRDGVVEYGTALRRDIAAAIRRHRPELVITMNHRDTW 128
Query: 111 GV--WGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRH 168
G W +H V A F + L + ++
Sbjct: 129 GGVAWNTPDHVAVGRATLDAAADAGNRWIFPELTDRGLEP------WNGVRWVAVAGSSS 182
Query: 169 PSKVIIINKQPWKSFKAMAQHLS 191
P+ + ++ +++ +H +
Sbjct: 183 PTHAVDATPGMERAVRSLLEHRT 205
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
radiodurans]
Length = 239
Score = 119 bits (298), Expect = 3e-26
Identities = 26/210 (12%), Positives = 49/210 (22%), Gaps = 59/210 (28%)
Query: 16 SFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNADGMG--SIRDQE 73
+ D T+ + IL + G G + R E
Sbjct: 21 APHPD-------------DAEIGAGGTLIRLAQAGRAVGILELTRGEKGTQGTPAERQAE 67
Query: 74 LHRACAVLKVIPFDKEGICDNDSCH--------------CNEEHIITFDNYGVWGHCNH- 118
A ++ + + G+ D + ++ + H +H
Sbjct: 68 CVAAARLMDLSWRGQLGLPDGELADTPPFAHALAAALRTVRPRVLVV--PHWHDRHPDHF 125
Query: 119 -------RDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSK 171
R +H K D V N + +
Sbjct: 126 GTYHLTKRAIHLAALKKADLGGDPWRVQRVLLYQGN-----------------SDISANV 168
Query: 172 VIIINKQPWKSFKAMAQHLSQWVWFRKLFV 201
++ I + A+ H SQ F +V
Sbjct: 169 LVDIGSVMTEWEAAIRAHTSQ---FAGGYV 195
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 308
Score = 119 bits (296), Expect = 5e-26
Identities = 37/248 (14%), Positives = 60/248 (23%), Gaps = 82/248 (33%)
Query: 29 RATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGN----------------ADGMG 67
R + D+ TI ++TS + ++ + G AD +G
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65
Query: 68 SIRDQELHRACAVLKVIPFDKEG----ICDNDS--------------------------- 96
R EL A L V G D+
Sbjct: 66 GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125
Query: 97 CHCNEEHIITFDNYGVWGHCNHRDVHPPID----------------CKIDSAKRIHGFLY 140
++T+D +G +GH +H H + Y
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTHFITAAAVASSGVAAGLEVGADEYPGKPWKVPKFY 185
Query: 141 VHQVSLNIFR--------KYCGPVDIWLS------ILSAKRHPSKVIIINKQPWKSFKAM 186
+L+ F K P S K + V + A+
Sbjct: 186 WSVFALSAFEAGMNALQGKDLRPEWTIPPREEFYFGYSDKDIDAVVEATSDVWAAKTAAL 245
Query: 187 AQHLSQWV 194
H +Q V
Sbjct: 246 TAHATQVV 253
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 119 bits (296), Expect = 6e-26
Identities = 24/192 (12%), Positives = 49/192 (25%), Gaps = 54/192 (28%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMG--SIRDQELHRACAVLKVIPFDKEGI 91
D T+ + + + G +G R QE A + + ++ +
Sbjct: 21 DVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGYVAREQLDL 80
Query: 92 CDNDS--------------CHCNEEHIITFDNYGVWGHCNHR--------DVHPPIDCKI 129
D++ + F N H +H + KI
Sbjct: 81 GDSELFYTKESLHKIIRIIRKYRPD--TVFCNPPDERHPDHMKASRLIYEACYYAGLRKI 138
Query: 130 D--------SAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWK 181
+ +A R LY Q + P V+ ++ +
Sbjct: 139 ETFDGGLPQAAHRPRHLLYYIQFK--------------------QLEPQIVVDVSSTFER 178
Query: 182 SFKAMAQHLSQW 193
S + +Q+
Sbjct: 179 SRAGIEAFGTQF 190
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 292
Score = 119 bits (296), Expect = 6e-26
Identities = 22/216 (10%), Positives = 49/216 (22%), Gaps = 53/216 (24%)
Query: 16 SFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNA--------DGMG 67
+ D+ ++ + + + G A + +
Sbjct: 54 APHPD-------------DETLGCGGVSAKKLASGVEVRFVFVTDGAASHRRLISPEELR 100
Query: 68 SIRDQELHRACAVLKV--IPFDKEGICDND---------------SCHCNEEHIITFDNY 110
S R+ E A L D + + + F +
Sbjct: 101 SRRESEALEAVHRLGASSESVTFLRFPDAEASHHIHAITKAIVPLLERWRPQSV--FVTH 158
Query: 111 GVWGHCNHRDVHPPIDCKIDSAKRIHGFL---YVHQVSLNIFRKYCGPVDIWLSILSAKR 167
+H V+ + + R + R +W + L
Sbjct: 159 AKDPPSDHIAVNAAVRAALRWHGRPLTVFEYPVWYWYHWPWVRPAGDLPGMWRTTLRQTV 218
Query: 168 H----------PSKVIIINKQPWKSFKAMAQHLSQW 193
+ ++ I + A+A H+SQ
Sbjct: 219 KTVAGLRALSALNTLVPIGEFLDVKRHALAAHVSQT 254
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
Length = 250
Score = 118 bits (295), Expect = 7e-26
Identities = 24/192 (12%), Positives = 49/192 (25%), Gaps = 54/192 (28%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMG--SIRDQELHRACAVLKVIPFDKEGI 91
D T+ + + + G +G R QE A + + ++ +
Sbjct: 21 DVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMGYVAREQLDL 80
Query: 92 CDNDS--------------CHCNEEHIITFDNYGVWGHCNHR--------DVHPPIDCKI 129
D++ + F N H +H + KI
Sbjct: 81 GDSELFYTKESLHKIIRIIRKYRPD--TVFCNPPDERHPDHMKASRLIYEACYYAGLRKI 138
Query: 130 D--------SAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWK 181
+ +A R LY Q + P V+ ++ +
Sbjct: 139 ETFDGGLPQAAHRPRHLLYYIQFK--------------------QLEPQIVVDVSSTFER 178
Query: 182 SFKAMAQHLSQW 193
S + +Q+
Sbjct: 179 SRAGIEAFGTQF 190
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
mediterranei]
Length = 255
Score = 118 bits (294), Expect = 1e-25
Identities = 29/210 (13%), Positives = 52/210 (23%), Gaps = 43/210 (20%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNAD-----------GMGSIRDQELHRACAVLK 82
DD + + ++ + G +G R E A VL
Sbjct: 13 DDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVEARAAADVLG 72
Query: 83 VIPFDKEGICDND--------------------------SCHCNEEHIITFDNYGVWGHC 116
V + G D+ + + +D G +G
Sbjct: 73 VDRLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTVYDEKGTYGDP 132
Query: 117 NHRDVHPPIDCKIDSAKRIHGFLYVHQV----SLNIFRKYCGPVDIW--LSILSAKRHPS 170
+H VH + A F + VD+ + + +
Sbjct: 133 DHIQVHRVGTRAAELAGTAKVFQSTINREHIKANQRVLAEQAGVDLPAGPDFGTPEAELT 192
Query: 171 KVIIINKQPWKSFKAMAQHLSQWVWFRKLF 200
+ ++ KA+ H SQ LF
Sbjct: 193 CRVDVSAYTEYKRKALLAHASQITPQSTLF 222
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 295
Score = 116 bits (290), Expect = 3e-25
Identities = 24/176 (13%), Positives = 46/176 (25%), Gaps = 51/176 (28%)
Query: 26 SISRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNADG-------------MG 67
R ++ D+ T+ + + ++ ++ + G +G
Sbjct: 5 PGRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSGAALG 64
Query: 68 SIRDQELHRACAVLKVIPFDKEG----ICDNDS--------------------------- 96
R EL A L V F G D+
Sbjct: 65 GHRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAALLVDV 124
Query: 97 -CHCNEEHIITFDNYGVWGHCNHRDVHPPIDCKIDSAKRIH-GFLYVHQVSLNIFR 150
+ ++T+D G +GH +H H + A V+ + R
Sbjct: 125 IREVRPQVLVTYDPNGGYGHPDHIQAHRIAMRAAELAAEAGCPVAKVYWNRVPRSR 180
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
Length = 185
Score = 113 bits (282), Expect = 3e-24
Identities = 20/180 (11%), Positives = 40/180 (22%), Gaps = 44/180 (24%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGMGSI-RDQELHRACAVLKVIPFDKEGIC 92
D ++ + + +TGN+ G I R +E A +L
Sbjct: 28 DIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGCHQTIHLNFA 87
Query: 93 D-----------NDSCHC-------NEEHIITFDNYGVWGHCNHRDVHPPIDCKIDSAKR 134
D + + E + + + H +H V+ + +
Sbjct: 88 DTRAHLQLNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHLAVYQASMVACRTIPQ 147
Query: 135 I---HGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQHLS 191
I +F A+ +H S
Sbjct: 148 ILGYETPSTWLSFMPQVFESVKEE----------------------YFTVKLAALKKHKS 185
>emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces rochei]
Length = 234
Score = 110 bits (275), Expect = 2e-23
Identities = 22/209 (10%), Positives = 43/209 (20%), Gaps = 50/209 (23%)
Query: 14 VASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNADGMGS----- 68
V + DD ++ + ++ +
Sbjct: 9 VVAPHPD-------------DDVIGCGGSMAKHVREGARVTVVVVIGRERSALDDAVTEA 55
Query: 69 IRDQELHRACAVLKVI-PFDKEGICDN---------DSCHCNEEH--IITFDNYGVWGHC 116
E A +L V + + D E + + +
Sbjct: 56 EFAAETENAAKILGVHRCVRFDESSRDFAPSRRIHLDLVRVLREVRPQVVYLPHDNDDDV 115
Query: 117 NHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLS---ILSAKRHP---- 169
HR VH + S F + G + + P
Sbjct: 116 EHRMVHRLTTEAL-----------WMAQS--EFFQEAGECPMPAPRLVLGYEVWSPMARY 162
Query: 170 SKVIIINKQPWKSFKAMAQHLSQWVWFRK 198
I + +AM ++SQ
Sbjct: 163 QYAEDIGEHIHTKVEAMRAYVSQLRHAAW 191
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 221
Score = 110 bits (275), Expect = 2e-23
Identities = 29/214 (13%), Positives = 55/214 (25%), Gaps = 58/214 (27%)
Query: 12 IWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNADG------ 65
I S D+ T+ + ++I+ + G+A
Sbjct: 3 ILFISPHPD-------------DECDNAGGTLAKLA-KSHEIYIVYMTDGSAGSPNPEER 48
Query: 66 ---MGSIRDQELHRACAVLKV--IPFDKEGICDNDSCHCNEEH--------------IIT 106
+ IR +E VL + D E II
Sbjct: 49 GEKLAEIRRKEALEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREIKPNIII 108
Query: 107 FDNYGVWGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAK 166
+ + + GH +H + +++N Y + I +
Sbjct: 109 YPSL-LDGHNDH----------WSGGYITRIAIRKVGITVN-ELSYLNWLPIPSKSVFDA 156
Query: 167 -------RHPSKVIIINKQPWKSFKAMAQHLSQW 193
H + I + +AM +H SQ+
Sbjct: 157 IKYLLIPFHRKIKVDIREYKRIKLEAMKKHESQF 190
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 108 bits (269), Expect = 8e-23
Identities = 34/183 (18%), Positives = 53/183 (28%), Gaps = 33/183 (18%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADG-------MGSIRDQELHRACAVLKVIPF 86
D+ + FT+ L LCF+ G A +G +R +EL A VL V
Sbjct: 22 DESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAAAAQVLGVDHV 81
Query: 87 DKEGICDNDSCHC----NEEHII----------TFDNYGVWGHCNHRDVHPPIDCKIDSA 132
DN + ++ FD+ GV GH +HR +
Sbjct: 82 QLLAYPDNGLAQIPLNELTQRVVDALAGADLLLVFDDNGVTGHPDHRRATEAALAAASTP 141
Query: 133 KRI---HGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQH 189
LN H +I ++ + A+ H
Sbjct: 142 GIPVLAWALPQPIADRLNAEFSASF-------GGRGHGHLDIMIEVD--RSRQLAAIGCH 192
Query: 190 LSQ 192
+Q
Sbjct: 193 FTQ 195
>pir||S44952 lmbE protein - Streptomyces lincolnensis
pir||S69814 lmbE protein - Streptomyces lincolnensis
emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
Length = 270
Score = 108 bits (268), Expect = 1e-22
Identities = 26/224 (11%), Positives = 60/224 (26%), Gaps = 62/224 (27%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADGM--------------GSIRDQELHRACA 79
D+ T+ ++T+ ++ + G A + ++R EL +
Sbjct: 14 DEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVRSAELDASAR 73
Query: 80 VLKVIPFDKEGICDNDS--------------------------CHCNEEHIITF-DNYGV 112
L + G D+ + +I + N+
Sbjct: 74 NLGYSAVHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPDVVIGYGTNHTR 133
Query: 113 WGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFR-------------KYCGPVDIW 159
H +H + + ++D +Y S R Y G +
Sbjct: 134 DPHPDHIRANEVLTRRVDLL-DHTPAVYHIAFSRRRHRALHQACVDSGVPSPYEGGLSAP 192
Query: 160 LSILSAKRHPSKVIIIN--KQPWKSFKAMAQHLSQW----VWFR 197
+ + ++ + + A+ H++Q WF
Sbjct: 193 PGAFDDEW-ITTLVDVTKGDAVERRLDALRSHVTQVPPASGWFA 235
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
tuberculosis H37Rv]
pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
H37Rv]
Length = 223
Score = 106 bits (264), Expect = 3e-22
Identities = 34/183 (18%), Positives = 53/183 (28%), Gaps = 33/183 (18%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADG-------MGSIRDQELHRACAVLKVIPF 86
D+ + FT+ L LCF+ G A +G +R +EL A VL V
Sbjct: 22 DESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAAAAQVLGVDHV 81
Query: 87 DKEGICDNDSCHC----NEEHII----------TFDNYGVWGHCNHRDVHPPIDCKIDSA 132
DN + ++ FD+ GV GH +HR +
Sbjct: 82 QLLAYPDNGLAQIPLNELTQRVVDALAGADLLLVFDDNGVTGHPDHRRATEAALAAASTP 141
Query: 133 KRI---HGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQH 189
LN H +I ++ + A+ H
Sbjct: 142 SIPVLAWALPQPIADRLNAEFSASF-------GGRGHGHLDIMIEVD--RSRQLAAIGCH 192
Query: 190 LSQ 192
+Q
Sbjct: 193 FTQ 195
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
Length = 151
Score = 101 bits (251), Expect = 1e-20
Identities = 44/144 (30%), Positives = 64/144 (43%), Gaps = 26/144 (18%)
Query: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATIL-----DDGKFFSPTINYFTSTACNLHI 55
++V L ++++I+ I S SR +L D+ FFSPTI + +
Sbjct: 7 LIVTLLLVLLLIFAVRSHPIPL--LSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFV 64
Query: 56 LCFSTGNADGMGSIRDQELHRACAVLKVI-----PFDKEGICDND------SCHCNEEH- 103
LC S GN DG+G IR +EL RA + L + D + D D C H
Sbjct: 65 LCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHV 124
Query: 104 -------IITFDNYGVWGHCNHRD 120
+I+FD++GV GH NH
Sbjct: 125 EVLAADTVISFDSHGVSGHHNHAR 148
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 124
Score = 97.2 bits (240), Expect = 2e-19
Identities = 59/110 (53%), Positives = 67/110 (60%), Gaps = 21/110 (19%)
Query: 38 FFSPTINYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV---------IPFDK 88
FFSPTINY S ACNLH+LC STGNADGMGSIR+ ELHRACAVLKV P +
Sbjct: 7 FFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQ 66
Query: 89 EGIC------------DNDSCHCNEEHIITFDNYGVWGHCNHRDVHPPID 126
+G + + + IITFDNYGV GHCNHRDVH +
Sbjct: 67 DGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVL 116
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 229
Score = 97.2 bits (240), Expect = 2e-19
Identities = 26/179 (14%), Positives = 47/179 (25%), Gaps = 44/179 (24%)
Query: 34 DDGKFFSPTINYFTSTACNLHILCFSTGNADG------MGSIRDQELHRACAVLKVIPFD 87
D F T+ + + L + G G + +R +E A +L P
Sbjct: 12 DIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAAAGLLGAAP-R 70
Query: 88 KEGICDNDS--------------CHCNEEHIITFDNYGVWGHCNHRDVHPPIDCKIDSAK 133
D + + +IT H +HR + + A
Sbjct: 71 FLDFPDGELVADAALIGALKTLIAGTGPDLVITHAPNDY--HADHRALSDSVRIAASFA- 127
Query: 134 RIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQHLSQ 192
+H ++ P+ + I+ KA+ H SQ
Sbjct: 128 ----VPVLHA----------------DTMGGTGFSPTHYVDISAHAEIKAKAIRMHQSQ 166
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
Length = 247
Score = 96.1 bits (237), Expect = 5e-19
Identities = 28/206 (13%), Positives = 55/206 (26%), Gaps = 39/206 (18%)
Query: 19 KIFFRATSI--SRATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGNAD--GMGSI 69
R+ RA + D S + + + ++ L + G A +
Sbjct: 6 PAPLRSMPDDWRRALAVVAHPDDLEYGCSAAVASWVADGKDVAYLLATRGEAGIDTLDPG 65
Query: 70 RDQEL-----HRACAVLKVIPFDKEGICDN--------------DSCHCNEEHIITF--- 107
R L A A + V + D E +IT
Sbjct: 66 RAGPLREAEQRAAAAAVGVRAVEFLDHRDGVIEYGASLRRDIAAAVRRHRPELVITLNHR 125
Query: 108 DNY--GVWGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSA 165
D + G W +H V + A F + + L + ++
Sbjct: 126 DTWAAGAWNTPDHVAVGRAVLDAAADAGNRWIFPELAEQGLVP------WNGVRWVAVAN 179
Query: 166 KRHPSKVIIINKQPWKSFKAMAQHLS 191
PS + + +++ +H +
Sbjct: 180 SPTPSHAVSAEPGFEQGVRSLLRHRT 205
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
Length = 303
Score = 95.7 bits (236), Expect = 6e-19
Identities = 30/211 (14%), Positives = 50/211 (23%), Gaps = 66/211 (31%)
Query: 29 RATIL-----DDGKFFSPTINYFTSTACNLHILCFSTGN----------------ADGMG 67
R + D+ TI ++TS +H++ + G AD +G
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65
Query: 68 SIRDQELHRACAVLKVIPFDKEG----ICDNDS--------------------------- 96
R EL A L V G D+
Sbjct: 66 GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125
Query: 97 CHCNEEHIITFDNYGVWGHCNHRDVHP------------PIDCKIDSAKRIHGFLYVHQV 144
++T+D G +GH +H H Y +
Sbjct: 126 RELRPHVVVTYDPNGGYGHPDHVHTHTVTTAAVAAAGVGSGTADHPGDPWTVPKFYWTVL 185
Query: 145 SLNIFRKYCGPVDIWLSILSAKRHPSKVIII 175
L+ + L + + I
Sbjct: 186 GLSALISGARA--LVPDDLRPEWVLPRADEI 214
>ref|NP_414898.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||D64764 hypothetical protein b0364 - Escherichia coli
gb|AAC73467.1| (AE000143) orf, hypothetical protein [Escherichia coli K12]
Length = 136
Score = 85.9 bits (211), Expect = 5e-16
Identities = 19/157 (12%), Positives = 35/157 (22%), Gaps = 44/157 (28%)
Query: 57 CFSTGNADGMGSI-RDQELHRACAVLKVIPFDKEGICD-----------NDSCHC----- 99
+TGN+ G I R +E A +L D +
Sbjct: 2 VMTTGNSGTDGIIDRHEESRNALKILGCHQTIHLNFADTRAHLQLNDMISALEDIIKNQI 61
Query: 100 --NEEHIITFDNYGVWGHCNHRDVHPPIDCKIDSAKRI---HGFLYVHQVSLNIFRKYCG 154
+ E + + + H +H V+ + +I +F
Sbjct: 62 PSDVEIMRVYTMHDADRHQDHLAVYQASMVACRTIPQILGYETPSTWLSFMPQVFESVKE 121
Query: 155 PVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQHLS 191
A+ +H S
Sbjct: 122 E----------------------YFTVKLAALKKHKS 136
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
Length = 252
Score = 83.6 bits (205), Expect = 3e-15
Identities = 16/136 (11%), Positives = 33/136 (23%), Gaps = 30/136 (22%)
Query: 29 RATIL----DDGKFFSPTINYFTSTACNLHILCFSTGNA---------DGMGSIRDQELH 75
R + DD T+ + ++ + G + + IR +
Sbjct: 2 RIMAVFAHPDDEIGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHGA 61
Query: 76 RACAVLKVI-------PFDKEGICDNDS------CHCNEEHIITF-DNYGVWGHCNHRDV 121
+ G D +IT+ D++ H +HR
Sbjct: 62 WVADKIGAKYHFFDMGDSRMTGGRDEALQLARLYATFRPHAVITWSDDHP---HPDHRMT 118
Query: 122 HPPIDCKIDSAKRIHG 137
+ A+
Sbjct: 119 AKIAFDAVTLARIPKI 134
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
Length = 232
Score = 78.9 bits (193), Expect = 7e-14
Identities = 25/213 (11%), Positives = 46/213 (20%), Gaps = 60/213 (28%)
Query: 12 IWVASFFKIFFRATSISRATILDDGKFFSPTINYFTSTACNLHILCFSTGNADG------ 65
+WV + D+ + + L + G
Sbjct: 13 LWVVAPHPD-------------DEALGCGALLAALAEAGREVWALLLTDGGFSHPASKAY 59
Query: 66 ----MGSIRDQELHRACAVLKVIPFDK--EGICDNDSCHCNEEHI--------------I 105
+ ++R E +VL V P G+ D
Sbjct: 60 PRPRLSAVRLAEWREGLSVLGVPPARTVALGLPDGALGEHLTAAARAQVRQAFAQARPGT 119
Query: 106 TFDNYGVWGHCNHRDVHPPIDCKIDSAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSA 165
+ H +HR L S + +Y V + A
Sbjct: 120 VLLPWERDPHPDHRA--------------AWHLLRGVLPSDTLALEYA--VWLPERGADA 163
Query: 166 KRHPSKVII-----INKQPWKSFKAMAQHLSQW 193
+ + +A+A H +Q
Sbjct: 164 DWPRPDEVEELTFAVGDWRDAKARAIASHRTQL 196
>pir||D69906 hypothetical protein yojG - Bacillus subtilis
emb|CAB13838.1| (Z99114) yojG [Bacillus subtilis]
gb|AAC17855.1| (AF026147) YojG [Bacillus subtilis]
Length = 142
Score = 74.3 bits (181), Expect = 2e-12
Identities = 19/123 (15%), Positives = 32/123 (25%), Gaps = 26/123 (21%)
Query: 81 LKVIPFDKEGICDND-SCHCNEEH--------IITFDNYGVWGHCNHRDVHPPIDCK-ID 130
L + D++ EE I+TF G H +H +
Sbjct: 2 LGLRDK-TLEFEDDEYLADIMEEIIDDVKPSLIVTF-YPGHGVHPDHDACGEAVIRALYR 59
Query: 131 SAKRIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVIIINKQPWKSFKAMAQHL 190
K ++ N + G D V+ I + A+ H
Sbjct: 60 KKKEDRPRTICMAITRNR-EEVLGEAD-------------VVLDIKEVADIKMNALRAHR 105
Query: 191 SQW 193
+Q
Sbjct: 106 TQT 108
CPU time: 67.91 user secs. 3.27 sys. secs 71.18 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.315 0.176 0.509
Gapped
Lambda K H
0.270 0.0617 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166230603
Number of Sequences: 887402
Number of extensions: 8970760
Number of successful extensions: 29002
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 28768
Number of HSP's gapped (non-prelim): 99
length of query: 223
length of database: 277,845,442
effective HSP length: 48
effective length of query: 175
effective length of database: 235,250,146
effective search space: 41168775550
effective search space used: 41168775550
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.7 bits)
S2: 72 (32.1 bits)
