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GPI Anchor Biosynthesis Report: NP_492873.1 (PIG-L family, Caenorhabditis elegans)




BLASTP 2.1.1 [Aug-8-2000]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
         (151 letters)

Database: nr
           887,402 sequences; 277,845,442 total letters

Searching..................................................

Converged !!!


Results of PSI-Blast iteration 3

Distribution of 50 Blast Hits on the Query Sequence


Sequences with E-value BETTER than threshold (0.002)

sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidyli... 161 5e-39
ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class ... 155 4e-37
ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans... 151 6e-36
sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-... 151 6e-36
emb|CAC18708.2| (AL451182) conserved hypothetical protein [Strep... 141 6e-33
ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus ab... 136 1e-31
ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycoba... 136 3e-31
ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus ho... 134 7e-31
gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furio... 133 2e-30
ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Myc... 133 2e-30
ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Myc... 132 4e-30
ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylino... 131 7e-30
ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Dei... 130 1e-29
ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thali... 123 1e-27
ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Sta... 122 3e-27
gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melano... 122 4e-27
ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Dei... 121 5e-27
ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycoba... 121 6e-27
ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [B... 120 1e-26
emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces co... 118 4e-26
ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [B... 117 1e-25
ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar t... 117 1e-25
emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophi... 115 6e-25
emb|CAC16965.1| (AL450350) conserved hypothetical protein [Strep... 113 1e-24
gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabi... 113 2e-24
ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thali... 113 2e-24
ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sul... 112 4e-24
gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum] 112 4e-24
gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum] 111 4e-24
ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clo... 111 4e-24
ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus r... 110 1e-23
emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Stre... 109 2e-23
ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycob... 109 3e-23
ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium... 109 3e-23
ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [... 108 4e-23
ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [... 107 1e-22
ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical p... 104 7e-22
emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces ro... 103 1e-21
emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces co... 103 1e-21
ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sin... 102 4e-21
sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA ... 100 1e-20
pir||S44952 lmbE protein - Streptomyces lincolnensis >gi|2127551... 99 2e-20
emb|CAC04222.1| (AL391515) conserved hypothetical protein [Strep... 100 3e-20
ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefacie... 98 8e-20
ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agr... 98 1e-19
ref|NP_437291.1| (NC_003078) conserved hypothetical protein, pos... 94 8e-19
gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolat... 91 7e-18
ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium... 91 1e-17
ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Dei... 71 1e-11
ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus r... 63 2e-09
Alignments
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
 emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
           deacetylase [Schizosaccharomyces pombe]
          Length = 248

 Score =  161 bits (405), Expect = 5e-39
 Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 4/146 (2%)

Query: 7   LIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRAL-LQAGHRVFVL 65
           L+VT + VL       S    L  +S IL + AHPDDE+MFF PTI  L  Q   RV VL
Sbjct: 8   LLVTAIAVLSTANESSSGQEKLAVES-ILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVL 66

Query: 66  CISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDT--WNRNALCQIVMRH 123
           C+SNGN DGLG +R +EL  AASK  I  ++V  +   +  DG    W+   + + + + 
Sbjct: 67  CLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQI 126

Query: 124 VEVLAADTVISFDSHGVSGHHNHARY 149
           +E     T+I+FD+ G+SGH NH   
Sbjct: 127 IERYNIKTLITFDNKGISGHPNHIAC 152
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
 sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (Phosphatidylinositol-glycan biosynthesis, class L
           protein) (PIG-L)
 dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
          Length = 252

 Score =  155 bits (389), Expect = 4e-37
 Identities = 58/153 (37%), Positives = 87/153 (55%), Gaps = 12/153 (7%)

Query: 7   LIVTLLLVLLLIFA----------VRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALL 56
           L+   L VL   F            R     L ++SR LL+IAHPDDE MFF+PT+  L 
Sbjct: 6   LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65

Query: 57  QAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFAD--GDTWNRN 114
           +  H V++LC S GN+   G+ R +EL ++   LGI  S V+ +D  +F D  G  W+  
Sbjct: 66  RLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTE 125

Query: 115 ALCQIVMRHVEVLAADTVISFDSHGVSGHHNHA 147
            + +++++H+EV   + V++FD+ GVSGH NH 
Sbjct: 126 HVARVLLQHIEVNGINLVVTFDAGGVSGHSNHI 158
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
 pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
 emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
          Length = 151

 Score =  151 bits (380), Expect = 6e-36
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MLPLILLIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGH 60
           MLPLILLIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGH
Sbjct: 1   MLPLILLIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGH 60

Query: 61  RVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIV 120
           RVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIV
Sbjct: 61  RVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIV 120

Query: 121 MRHVEVLAADTVISFDSHGVSGHHNHARYRP 151
           MRHVEVLAADTVISFDSHGVSGHHNHARYRP
Sbjct: 121 MRHVEVLAADTVISFDSHGVSGHHNHARYRP 151
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (Phosphatidylinositol-glycan biosynthesis, class L
           protein) (PIG-L)
 dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
          Length = 252

 Score =  151 bits (379), Expect = 6e-36
 Identities = 55/153 (35%), Positives = 82/153 (52%), Gaps = 12/153 (7%)

Query: 7   LIVTLLLVLLLIFA----------VRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALL 56
           L+   + VL   F                    + SR L++IAHPDDE MFF+PTI  L 
Sbjct: 6   LLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPTILGLA 65

Query: 57  QAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGD--TWNRN 114
           +   +V +LC S+GN+   G+IR +EL ++ + LGI  S V+ +D  EF D     W+  
Sbjct: 66  RLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTE 125

Query: 115 ALCQIVMRHVEVLAADTVISFDSHGVSGHHNHA 147
            +   +++H+   A D V++FD+ GVSGH NH 
Sbjct: 126 HVASTILQHIHANATDLVVTFDAEGVSGHSNHI 158
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
          Length = 293

 Score =  141 bits (354), Expect = 6e-33
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 27/149 (18%)

Query: 28  LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG------------- 74
           +  Q R++ + AHPDDE+   + T+   +  G  V V+  + G                 
Sbjct: 1   MTDQLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIE 60

Query: 75  --LGKIRARELSRAASKLGISASDVICLDYDEFADGD-----------TWNRNALCQIVM 121
             + ++R +E+  A   LG+    +  +D     +GD             + +     ++
Sbjct: 61  ENIHEVRRKEMDEAREILGVGQEWLGFVDS-GLPEGDPLPPLPEGCFALEDVDKAAGELV 119

Query: 122 RHVEVLAADTVISFDSHGVSGHHNHARYR 150
           R +       + ++D +G   H +H    
Sbjct: 120 RKIRSFRPQVITTYDENGGYPHPDHIMTH 148
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
 pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
 emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
          Length = 267

 Score =  136 bits (342), Expect = 1e-31
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 27  PLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------LGK 77
           P     ++L +  HPDD  +    TI+ L + G  V   C+++G             L  
Sbjct: 27  PFKDVEKVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELAT 86

Query: 78  IRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDS 137
           IR RE   ++  LG+     +     E           + + ++R +     D V   D 
Sbjct: 87  IRRREEEESSKLLGVKKIYWLNYRDTELPYS-----REVRKDLVRIIRKEKPDGVFLPDP 141

Query: 138 H-GVSGHHNHARY 149
                 H +H   
Sbjct: 142 WLPYEAHPDHRNT 154
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
           H37Rv]
 ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
 pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
           H37Rv]
 gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
          Length = 288

 Score =  136 bits (340), Expect = 3e-31
 Identities = 31/145 (21%), Positives = 58/145 (39%), Gaps = 24/145 (16%)

Query: 30  SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNF--------------DGL 75
           S+ R++ + AHPDDE+   + T+      GHRV V+ ++ G                  +
Sbjct: 2   SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRI 61

Query: 76  GKIRARELSRAASKLGISASDVICLDY--------DEFADG--DTWNRNALCQIVMRHVE 125
            +IR  E+++AA  LG+  + +  +D             D            + ++R V 
Sbjct: 62  AEIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVR 121

Query: 126 VLAADTVISFDSHGVSGHHNHARYR 150
                 + ++D +G   H +H R  
Sbjct: 122 EFRPHVMTTYDENGGYPHPDHIRCH 146
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
 pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
 dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 272

 Score =  134 bits (336), Expect = 7e-31
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 25  PIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------L 75
             P     ++L +  HPDD  +    TI+ L   G  V  +C+++G             L
Sbjct: 29  QNPFKDAKKVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSGHEL 88

Query: 76  GKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF 135
             IR +E   +A  LG+     +     E           + + + + +     D V + 
Sbjct: 89  AAIRRKEEEESARLLGVKKIYWLNYRDTELPYS-----REVRKDLTKILRKEQPDGVFAP 143

Query: 136 DSH-GVSGHHNHARY 149
           D       H +H R 
Sbjct: 144 DPWLPYESHPDHRRT 158
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
          Length = 267

 Score =  133 bits (333), Expect = 2e-30
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 26  IPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------LG 76
            P     +++ +  HPDD  +    TI+ L   G  V  +C+++G             L 
Sbjct: 26  NPFEDAKKVICIEPHPDDCAIGMGGTIKKLSDEGVEVIYICMTDGYMGTTDEKLSGHELA 85

Query: 77  KIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFD 136
            IR RE   +A  LG+     +     E           + + +++ +     D V + D
Sbjct: 86  LIRRREEEESAKLLGVRKIYWLNYRDTELPYS-----REVRKDLVKIIRKEKPDGVFAPD 140

Query: 137 SH-GVSGHHNHARY 149
                  H +H R 
Sbjct: 141 PWLPYESHPDHRRT 154
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
 gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
 emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
          Length = 290

 Score =  133 bits (333), Expect = 2e-30
 Identities = 30/145 (20%), Positives = 57/145 (38%), Gaps = 24/145 (16%)

Query: 30  SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNF--------------DGL 75
           S+ R++ + AHPDDE+   + T+      GHRV V+ ++ G                  +
Sbjct: 2   SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGHI 61

Query: 76  GKIRARELSRAASKLGISASDVICLDYDEFADG----------DTWNRNALCQIVMRHVE 125
            +IR  E+++AA  LG+  + +  +D                          + ++R V 
Sbjct: 62  AEIRRDEMAKAAEILGVEHTWLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVVR 121

Query: 126 VLAADTVISFDSHGVSGHHNHARYR 150
                 + ++D +G   H +H R  
Sbjct: 122 KFRPHVLTTYDENGGYPHPDHIRCH 146
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
 emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
          Length = 308

 Score =  132 bits (330), Expect = 4e-30
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN----------------FDGLG 76
           R+L + AHPDDE++    TI      G +V V+  + G                  D LG
Sbjct: 6   RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65

Query: 77  KIRARELSRAASKLGISASDVI--CLDYDEFADG----------DTWNRNALCQIVMRHV 124
             R  EL+ A   LG+SA   +     + +                 + N     ++  +
Sbjct: 66  GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125

Query: 125 EVLAADTVISFDSHGVSGHHNHARYR 150
             L    V+++D HG  GH +H    
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTH 151
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
           de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
 sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
 pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
           cerevisiae)
 emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
 dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
          Length = 304

 Score =  131 bits (328), Expect = 7e-30
 Identities = 49/167 (29%), Positives = 82/167 (48%), Gaps = 23/167 (13%)

Query: 5   ILLIVTLLLVLLLIFAVRSHPIPLLSQS--------------RILLLIAHPDDETMFFSP 50
           +L  +T L ++L I  +   P  +   +               I L+IAHPDDE MFFSP
Sbjct: 14  LLYKITKLAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSP 73

Query: 51  TIRALLQAGHRVF---VLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFAD 107
            I  L     R     ++C+S GN +GLG+ R REL+ +A+ L +     + +   +F D
Sbjct: 74  IISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL-LHNERAVSVQVMDFQD 132

Query: 108 GDT--WNRNALCQIVMRHVEVLAA---DTVISFDSHGVSGHHNHARY 149
           G    W+ +++   + + +++        +++FDS+GVS H NH   
Sbjct: 133 GMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSC 179
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
           radiodurans]
 pir||F75517 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 281

 Score =  130 bits (326), Expect = 1e-29
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 26/151 (17%)

Query: 21  VRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------- 73
             S P P   ++ +L++ AHPDDE      T+    + G RV + C + G          
Sbjct: 3   SSSTPAP---RATLLVIFAHPDDEAFSVGGTLTHYARQGVRVVLACATRGEAGKITVPGM 59

Query: 74  ---GLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQ-----------I 119
               LG  R +EL  A   L I     + LDY +    +    +                
Sbjct: 60  TVDDLGAQREQELREACRALEIEPP--VFLDYHDSGRYERTRHDDPTALMNVNPLDAEVK 117

Query: 120 VMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
           +   +E +    +++FD HG  GH +H +  
Sbjct: 118 LRALIEDVQPQVIVTFDPHGAYGHVDHLQMH 148
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
          Length = 223

 Score =  123 bits (308), Expect = 1e-27
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 26/147 (17%)

Query: 7   LIVTLLLVLLLIFAVRSHPIPL--LSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFV 64
           ++V  L ++++I+      I     S SR  +L     D+  FFSPTI         + +
Sbjct: 1   MVVVFLSLIVVIWVASFFKIFFRATSISRATIL-----DDGKFFSPTINYFTSTACNLHI 55

Query: 65  LCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHV 124
           LC S GN DG+G IR +EL RA + L +     I  D +   D D+      C     H+
Sbjct: 56  LCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDKEGICDNDS------CHCNEEHI 104

Query: 125 EVLAADTVISFDSHGVSGHHNHARYRP 151
                   I+FD++GV GH NH    P
Sbjct: 105 --------ITFDNYGVWGHCNHRDVHP 123
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus Mu50]
 ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus N315]
 dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus N315]
 dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
           subsp. aureus Mu50]
          Length = 221

 Score =  122 bits (305), Expect = 3e-27
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 16/131 (12%)

Query: 28  LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------GL 75
           +  +  +L++  HPDDET   + T+ + +Q G  V   C++ G                L
Sbjct: 1   MTDERHVLVIFPHPDDETFSSAGTLASYIQKGIPVTYACLTLGQMGRNLGNPPFATRESL 60

Query: 76  GKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF 135
             IR REL  A   +GI+    + L        +      +  ++   ++      +ISF
Sbjct: 61  PSIRERELEEACKVIGITDLRKMGLRD---KTVEFEPYEHIDGMIKSLIDDTNPSLIISF 117

Query: 136 DSHGVSGHHNH 146
              G + H +H
Sbjct: 118 YP-GYAVHPDH 127
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
          Length = 390

 Score =  122 bits (305), Expect = 4e-27
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 24/140 (17%)

Query: 31  QSRILLLIAHPDDETMFFSPTIRALLQ-AGHRVFVLCISNGN------------------ 71
             R+LL+ AHPDDE MFF P I +L Q  G +V++LC+SNG                   
Sbjct: 139 MERVLLITAHPDDECMFFGPLIYSLTQRQGCQVYILCLSNGETTSSDIIPKPPIDLEALN 198

Query: 72  ---FDGLGKIRARELSRAASKLGISASDVICLDYDEFADGD--TWNRNALCQIVMRHVEV 126
              F+   K+R +EL R+ SKLGI  S+++ ++     D     W  +A+  +++  +E 
Sbjct: 199 ESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVASLILHTIES 258

Query: 127 LAADTVISFDSHGVSGHHNH 146
           L    + +FD  GVS H NH
Sbjct: 259 LDIQAIFTFDRDGVSSHPNH 278
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
           radiodurans]
 pir||G75562 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 237

 Score =  121 bits (303), Expect = 5e-27
 Identities = 31/130 (23%), Positives = 58/130 (43%), Gaps = 12/130 (9%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG----------LGKIRARE 82
           ++LL++ HPDDE    S T+   L AG    ++ ++ G              L ++RA E
Sbjct: 14  KLLLIVPHPDDEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCDGPEELARMRAVE 73

Query: 83  LSRAASKLGISASDVICLDYDEFADG--DTWNRNALCQIVMRHVEVLAADTVISFDSHGV 140
           L+     +G++ +     +  +F D     +    L +     +E L  +TV++F  +G 
Sbjct: 74  LAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLRPETVLTFPPNGS 133

Query: 141 SGHHNHARYR 150
           +GH +H    
Sbjct: 134 NGHPDHMTTH 143
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
           H37Rv]
 ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
           CDC1551]
 pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
           H37Rv]
 gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 303

 Score =  121 bits (303), Expect = 6e-27
 Identities = 31/141 (21%), Positives = 52/141 (35%), Gaps = 28/141 (19%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN----------------FDGLG 76
           R+L + AHPDDE++    TI      G +V V+  + G                  D LG
Sbjct: 6   RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65

Query: 77  KIRARELSRAASKLGISASDVI--CLDYDEFADG----------DTWNRNALCQIVMRHV 124
             R  EL+ A   LG+SA   +     + +                 +       ++  +
Sbjct: 66  GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125

Query: 125 EVLAADTVISFDSHGVSGHHN 145
             L    V+++D +G  GH +
Sbjct: 126 RELRPHVVVTYDPNGGYGHPD 146
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
 dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
          Length = 227

 Score =  120 bits (300), Expect = 1e-26
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 16/131 (12%)

Query: 28  LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------GL 75
           +  +  +L++  HPDDE    S TI    + G  V   C++ G                L
Sbjct: 1   MNQERHVLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESL 60

Query: 76  GKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF 135
             IR +EL ++A  +GI   D+  L Y +    +  +   L  +V   +  L    +I+F
Sbjct: 61  PDIRKKELIKSAEAMGI--EDLRMLGYRD-KTIEFEDETKLTDMVSDLMAELNPSLIITF 117

Query: 136 DSHGVSGHHNH 146
              G S H +H
Sbjct: 118 YP-GYSVHPDH 127
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 295

 Score =  118 bits (296), Expect = 4e-26
 Identities = 27/151 (17%), Positives = 55/151 (35%), Gaps = 28/151 (18%)

Query: 28  LLS--QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------ 73
           +      R+LL+ AHPDDE++    T+      G  V ++  + G               
Sbjct: 1   MTDLPGRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSG 60

Query: 74  -GLGKIRARELSRAASKLGISASDVIC--LDYDEFADGDTWNRNA-----------LCQI 119
             LG  R  EL+ A   LG+    ++     Y +       + +               +
Sbjct: 61  AALGGHRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAAL 120

Query: 120 VMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
           ++  +  +    ++++D +G  GH +H +  
Sbjct: 121 LVDVIREVRPQVLVTYDPNGGYGHPDHIQAH 151
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
 dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
          Length = 231

 Score =  117 bits (292), Expect = 1e-25
 Identities = 26/122 (21%), Positives = 43/122 (34%), Gaps = 8/122 (6%)

Query: 30  SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKI--RARELSRAA 87
           S+  IL   AHPDD  +    T+    Q GHRV +  ++       G +  R +E + A+
Sbjct: 2   SKLDILAFGAHPDDVEIGMGATLYHYRQKGHRVGICNLTKAELSSNGTVEQRQKEAADAS 61

Query: 88  SKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHA 147
             LGI     + L      +        +  ++              F  + V  H +H 
Sbjct: 62  RILGIDERIQLDLPDRGLRNPSEQQVRNIVSVIRH------CQPTFVFVPYPVDRHPDHG 115

Query: 148 RY 149
             
Sbjct: 116 HC 117
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
           proteins [Bacillus subtilis]
 sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
 pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
 gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
 gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
 emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
           [Bacillus subtilis]
          Length = 224

 Score =  117 bits (291), Expect = 1e-25
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 31  QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKI--RARELSRAAS 88
            + +L   AH DD  +    TI   ++   +V +  ++       G +  R  E + AA 
Sbjct: 3   NADVLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTEAELSSNGTVSLRKEEAAEAAR 62

Query: 89  KLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
            LG      + L        D        + ++  + +     V  F  +    H +H
Sbjct: 63  ILGADKRIQLTLPDRGLIMSDQA-----IRSIVTVIRICRPKAV--FMPYKKDRHPDH 113
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
          Length = 227

 Score =  115 bits (286), Expect = 6e-25
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 31  QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLG--KIRARELSRAAS 88
              +L++  HPDD  +    T+      G    +L ++ G     G  + R +E++ A+ 
Sbjct: 1   MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASR 60

Query: 89  KLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
            LG+            F DG   +       + + +  L    V  F       H +H
Sbjct: 61  ILGLD-----FRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVV--FAPLEADRHPDH 111
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
          Length = 277

 Score =  113 bits (283), Expect = 1e-24
 Identities = 29/151 (19%), Positives = 53/151 (34%), Gaps = 30/151 (19%)

Query: 28  LLSQ-SRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISN------------GNFDG 74
           +  +   ++ + AHPDDE       +      G R  ++  ++            G+   
Sbjct: 1   MTDRPLTLMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGH 60

Query: 75  ----LGKIRARELSRAASKLGISASDVICLDYDEFAD---------GDTW--NRNALCQI 119
               +  +R REL  +   L I  SD+  LDY +            G  W          
Sbjct: 61  DPAAVALMRRRELEESRDILKI--SDLETLDYADSGMMGWPSNDAPGSFWRTPVEEGAAR 118

Query: 120 VMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
           +   +     D V+++D +G  GH +H +  
Sbjct: 119 LAELMRHYRPDVVVTYDENGFYGHPDHIQAH 149
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
          Length = 185

 Score =  113 bits (281), Expect = 2e-24
 Identities = 47/158 (29%), Positives = 67/158 (41%), Gaps = 37/158 (23%)

Query: 7   LIVTLLLVLLLIFAVRSHPIPL--LSQSRILLLIAHPDD--ETM----------FFSPTI 52
           ++V  L ++++I+      I     S SR  +L    DD  E            FFSPTI
Sbjct: 1   MVVVFLSLIVVIWVASFFKIFFRATSISRATIL----DDGKEEKCDVFMDMLDRFFSPTI 56

Query: 53  RALLQAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWN 112
                    + +LC S GN DG+G IR +EL RA + L +     I  D +   D D+  
Sbjct: 57  NYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDKEGICDNDS-- 109

Query: 113 RNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
               C     H+        I+FD++GV GH NH    
Sbjct: 110 ----CHCNEEHI--------ITFDNYGVWGHCNHRDVH 135
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
 pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
 emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
          Length = 124

 Score =  113 bits (281), Expect = 2e-24
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 47  FFSPTIRALLQAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFA 106
           FFSPTI  L      + +LC+S GN DG+G IR  EL RA + L +    +  L++    
Sbjct: 7   FFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQ 66

Query: 107 D--GDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
           D  G  W+ + L +I+   V      T+I+FD++GVSGH NH    
Sbjct: 67  DGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVH 112
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
           solfataricus]
 gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 193

 Score =  112 bits (279), Expect = 4e-24
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 31  QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG----------LGKIRA 80
             R+L++  HPDDET+    TI+   + G+++ V+ +++G +            L +IR 
Sbjct: 7   MRRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRR 66

Query: 81  RELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGV 140
           +E  RA   LGI    V  L++++    +    NAL + +  +         + F     
Sbjct: 67  QEALRATKILGIDE--VKFLNFEDSKVSEEDAENALAEFLREND--------VVFSPIPF 116

Query: 141 SGHHNHAR 148
             H +HA 
Sbjct: 117 DNHPDHAN 124
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
          Length = 240

 Score =  112 bits (279), Expect = 4e-24
 Identities = 24/118 (20%), Positives = 45/118 (37%), Gaps = 9/118 (7%)

Query: 34  ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLG--KIRARELSRAASKLG 91
            L   AHPDD  +    T+  ++  G  V V  ++ G    LG  + R +E + A  ++G
Sbjct: 12  ALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMG 71

Query: 92  ISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARY 149
                 +  +  +  D + +        ++R +     DTV          H +H + 
Sbjct: 72  Y-----VAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPD--ERHPDHMKA 122
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
          Length = 250

 Score =  111 bits (278), Expect = 4e-24
 Identities = 24/118 (20%), Positives = 45/118 (37%), Gaps = 9/118 (7%)

Query: 34  ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLG--KIRARELSRAASKLG 91
            L   AHPDD  +    T+  ++  G  V V  ++ G    LG  + R +E + A  ++G
Sbjct: 12  ALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMG 71

Query: 92  ISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARY 149
                 +  +  +  D + +        ++R +     DTV          H +H + 
Sbjct: 72  Y-----VAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPD--ERHPDHMKA 122
>ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clostridium
           perfringens]
 dbj|BAB80196.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
          Length = 601

 Score =  111 bits (278), Expect = 4e-24
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 18/139 (12%)

Query: 2   LPLILLIVTLLLVLLLI-------FAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRA 54
           + +I+  + + L +          F+       + +   I++++ H DDE      TI+ 
Sbjct: 14  ISIIIFCIVMTLFISTANMDYGSNFSNSIDYSEMWTNKEIMVIVPHQDDEINLAGATIKR 73

Query: 55  LLQAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRN 114
           L+  G+ V V+  +NG+F GLG  R +E   A   LG+++ +VI L Y     GD W   
Sbjct: 74  LIDNGNNVKVVFATNGDFKGLGTKRIKEAVEAVRILGVNSENVIFLGY-----GDRW--- 125

Query: 115 ALCQIVMRHVEVLAADTVI 133
              +    H+     + +I
Sbjct: 126 ---EETKEHIYNSDDNKII 141
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
 pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
 gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
          Length = 252

 Score =  110 bits (275), Expect = 1e-23
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN-FDGLGKIRARELSRAASKLG 91
           RI+ + AHPDDE +    T+    + G  V ++  + G      G     E+ R   + G
Sbjct: 2   RIMAVFAHPDDE-IGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHG 60

Query: 92  ISASDVICLDYDEFADGDT--WNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARY 149
              +D I   Y  F  GD+           + R         VI++       H +H   
Sbjct: 61  AWVADKIGAKYHFFDMGDSRMTGGRDEALQLARLYATFRPHAVITWSDD--HPHPDHRMT 118
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
           A3(2)]
          Length = 247

 Score =  109 bits (272), Expect = 2e-23
 Identities = 28/132 (21%), Positives = 49/132 (36%), Gaps = 17/132 (12%)

Query: 30  SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD--GL-----GKIRARE 82
              R L ++AHPDD     +  I A    G  V  +  + G      L       +R RE
Sbjct: 15  DWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGIDTLAPAECAPLRERE 74

Query: 83  LSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF---DSHG 139
              +A+ +G+S      +++ +  DG      AL + +   +     + VI+    D+ G
Sbjct: 75  QRASAAVVGVSE-----VEFLDHRDGVVEYGTALRRDIAAAIRRHRPELVITMNHRDTWG 129

Query: 140 V--SGHHNHARY 149
                  +H   
Sbjct: 130 GVAWNTPDHVAV 141
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
           tuberculosis H37Rv]
 pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis  (strain
           H37RV)
 emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
           H37Rv]
          Length = 223

 Score =  109 bits (271), Expect = 3e-23
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG-------LGKIRARELSR 85
            +L + AHPDDE+      +      G R+  LC ++G           LG++R  EL+ 
Sbjct: 12  EVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAA 71

Query: 86  AASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHN 145
           AA  LG+    ++    +  A       N L Q V+  +    AD ++ FD +GV+GH +
Sbjct: 72  AAQVLGVDHVQLLAYPDNGLA---QIPLNELTQRVVDALA--GADLLLVFDDNGVTGHPD 126

Query: 146 HAR 148
           H R
Sbjct: 127 HRR 129
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
           CDC1551]
 gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 223

 Score =  109 bits (271), Expect = 3e-23
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG-------LGKIRARELSR 85
            +L + AHPDDE+      +      G R+  LC ++G           LG++R  EL+ 
Sbjct: 12  EVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAA 71

Query: 86  AASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHN 145
           AA  LG+    ++    +  A       N L Q V+  +    AD ++ FD +GV+GH +
Sbjct: 72  AAQVLGVDHVQLLAYPDNGLA---QIPLNELTQRVVDALA--GADLLLVFDDNGVTGHPD 126

Query: 146 HAR 148
           H R
Sbjct: 127 HRR 129
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
          Length = 221

 Score =  108 bits (270), Expect = 4e-23
 Identities = 23/129 (17%), Positives = 48/129 (36%), Gaps = 16/129 (12%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------GLGKIRA 80
            +L+++ HPDDE+   +  I    +    V   C + G                L  +R 
Sbjct: 4   HVLVILPHPDDESYGVAGLIALNRKKDIPVTYACATLGEMGRNMGDPFFANRETLPLLRK 63

Query: 81  RELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGV 140
           +EL  A  ++ I+   ++ L        +  +   L  I+   ++ +    +++F   G 
Sbjct: 64  QELINACKEMDINDLRMLGLRDKTL---EFEDDEYLADIMEEIIDDVKPSLIVTFYP-GH 119

Query: 141 SGHHNHARY 149
             H +H   
Sbjct: 120 GVHPDHDAC 128
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
           radiodurans]
          Length = 239

 Score =  107 bits (266), Expect = 1e-22
 Identities = 25/114 (21%), Positives = 40/114 (34%), Gaps = 9/114 (7%)

Query: 35  LLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGK--IRARELSRAASKLGI 92
           L L  HPDD  +    T+  L QAG  V +L ++ G     G    R  E   AA  +  
Sbjct: 18  LCLAPHPDDAEIGAGGTLIRLAQAGRAVGILELTRGEKGTQGTPAERQAECVAAARLM-- 75

Query: 93  SASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
              D+         DG+  +       +   +  +    ++    H    H +H
Sbjct: 76  ---DLSWRGQLGLPDGELADTPPFAHALAAALRTVRPRVLVV--PHWHDRHPDH 124
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
           tokodaii]
 dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
           tokodaii]
          Length = 221

 Score =  104 bits (259), Expect = 7e-22
 Identities = 26/125 (20%), Positives = 49/125 (38%), Gaps = 18/125 (14%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------LGKIRAREL 83
           RIL +  HPDDE      T+  L    H ++++ +++G+            L +IR +E 
Sbjct: 2   RILFISPHPDDECDNAGGTLAKLA-KSHEIYIVYMTDGSAGSPNPEERGEKLAEIRRKEA 60

Query: 84  SRAASKLGISASDVICLDYDE--FADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVS 141
                 LGI   +   L+Y +             + +I+         + +I      + 
Sbjct: 61  LEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREI----KPNIII--YPSLLD 114

Query: 142 GHHNH 146
           GH++H
Sbjct: 115 GHNDH 119
>emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces rochei]
          Length = 234

 Score =  103 bits (257), Expect = 1e-21
 Identities = 24/128 (18%), Positives = 47/128 (35%), Gaps = 12/128 (9%)

Query: 28  LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGK-----IRARE 82
           +   + +L++  HPDD+ +    ++   ++ G RV V+ +       L         A E
Sbjct: 1   MTGVTDVLVVAPHPDDDVIGCGGSMAKHVREGARVTVVVVIGRERSALDDAVTEAEFAAE 60

Query: 83  LSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSG 142
              AA  LG+      C+ +DE +  D      +   ++R +  +    V  +  H    
Sbjct: 61  TENAAKILGVH----RCVRFDESS-RDFAPSRRIHLDLVRVLREVRPQVV--YLPHDNDD 113

Query: 143 HHNHARYR 150
              H    
Sbjct: 114 DVEHRMVH 121
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
 emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
          Length = 218

 Score =  103 bits (257), Expect = 1e-21
 Identities = 23/117 (19%), Positives = 41/117 (34%), Gaps = 7/117 (5%)

Query: 31  QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN-FDGLGKIRARELSRAASK 89
            + +L+++AHPDD  +     I      G  V V C++ G       ++R +E   A   
Sbjct: 1   MTSVLVVVAHPDDAEIAMGMRIHWYALNGATVRVHCLTTGTPAPDGTEVRRQECLSAGEL 60

Query: 90  LGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
           LG+       +    F      NR  +   +         D + +        H +H
Sbjct: 61  LGVDQYTFSSIPDTRF----VENRGRINADLFDVFREARPDIIYTHYPD--DQHLDH 111
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
 emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
          Length = 292

 Score =  102 bits (253), Expect = 4e-21
 Identities = 28/137 (20%), Positives = 51/137 (36%), Gaps = 13/137 (9%)

Query: 22  RSHPIPLLSQSRILLLI-AHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG------ 74
           R  P  +   S   ++   HPDDET+         L +G  V  + +++G          
Sbjct: 37  RFKPFDVADWSASSVIFAPHPDDETLGCGGVSAKKLASGVEVRFVFVTDGAASHRRLISP 96

Query: 75  --LGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTV 132
             L   R  E   A  +LG S+  V  L + +       + +A+ + ++  +E     +V
Sbjct: 97  EELRSRRESEALEAVHRLGASSESVTFLRFPDAEAS--HHIHAITKAIVPLLERWRPQSV 154

Query: 133 ISFDSHGVSGHHNHARY 149
             F +H      +H   
Sbjct: 155 --FVTHAKDPPSDHIAV 169
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
 gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
          Length = 185

 Score =  100 bits (248), Expect = 1e-20
 Identities = 25/120 (20%), Positives = 45/120 (36%), Gaps = 8/120 (6%)

Query: 34  ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKI-RARELSRAASKLGI 92
           IL + AHPDD  +    ++  L Q G  +  + ++ GN    G I R  E   A   LG 
Sbjct: 19  ILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGC 78

Query: 93  SASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAA---DTVISFDSHGVSGHHNHARY 149
             +  I L++ +         N +   +   ++       + +  +  H    H +H   
Sbjct: 79  HQT--IHLNFADTRAHLQ--LNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHLAV 134
>pir||S44952 lmbE protein - Streptomyces lincolnensis
 pir||S69814 lmbE protein - Streptomyces lincolnensis
 emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
          Length = 270

 Score =   99 bits (247), Expect = 2e-20
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 34  ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD--------------GLGKIR 79
           +L + AHPDDE      T+      G R  ++  ++G                     +R
Sbjct: 5   LLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVR 64

Query: 80  ARELSRAASKLGISASDVICLDYDEFADG---------DTWNRNALCQIVMRHVEVLAAD 130
           + EL  +A  LG SA  V  L Y +                  +     + R +     D
Sbjct: 65  SAELDASARNLGYSA--VHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPD 122

Query: 131 TVISF-DSHGVSGHHNHARY 149
            VI +  +H    H +H R 
Sbjct: 123 VVIGYGTNHTRDPHPDHIRA 142
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
          Length = 247

 Score = 99.5 bits (246), Expect = 3e-20
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 23  SHPIPLL----SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD--GLG 76
           S P PL        R L ++AHPDD     S  + + +  G  V  L  + G      L 
Sbjct: 4   SAPAPLRSMPDDWRRALAVVAHPDDLEYGCSAAVASWVADGKDVAYLLATRGEAGIDTLD 63

Query: 77  KIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFD 136
             RA  L  A  +   +A  V  +++ +  DG      +L + +   V     + VI+ +
Sbjct: 64  PGRAGPLREAEQRAAAAAVGVRAVEFLDHRDGVIEYGASLRRDIAAAVRRHRPELVITLN 123

Query: 137 -----SHGVSGHHNHARY 149
                + G     +H   
Sbjct: 124 HRDTWAAGAWNTPDHVAV 141
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
           tumefaciens str. C58 (Cereon)]
 gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
          Length = 815

 Score = 98.0 bits (242), Expect = 8e-20
 Identities = 40/156 (25%), Positives = 60/156 (37%), Gaps = 30/156 (19%)

Query: 19  FAVRSHPIPLLSQSRILLLI--AHPDDETMFFSPTIRAL-LQAGHRVFVLCISNGN---- 71
           + +R H      +S + ++   AHPDDE       +     + G R  + C + G     
Sbjct: 31  WLIRLHRKLSALKSTVTVMHTGAHPDDEQN---GLLAYFRTELGMRTIIACSTRGEGGQN 87

Query: 72  ------FDGLGKIRARELSRAASKLGISASDV------ICLDYDEFADGDT----WNRNA 115
                    LG IR+REL  AA  +    S +      I  D+    DGD     W +N 
Sbjct: 88  ALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRWGQNR 147

Query: 116 LCQIVMRHVEVLAADTVI-SF-DSHGVSGHHNHARY 149
           + + ++R       D VI +F D  G  GH  H   
Sbjct: 148 IVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAM 181
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
 gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 800

 Score = 97.6 bits (241), Expect = 1e-19
 Identities = 40/156 (25%), Positives = 60/156 (37%), Gaps = 30/156 (19%)

Query: 19  FAVRSHPIPLLSQSRILLLI--AHPDDETMFFSPTIRAL-LQAGHRVFVLCISNGN---- 71
           + +R H      +S + ++   AHPDDE       +     + G R  + C + G     
Sbjct: 16  WLIRLHRKLSALKSTVTVMHTGAHPDDEQN---GLLAYFRTELGMRTIIACSTRGEGGQN 72

Query: 72  ------FDGLGKIRARELSRAASKLGISASDV------ICLDYDEFADGDT----WNRNA 115
                    LG IR+REL  AA  +    S +      I  D+    DGD     W +N 
Sbjct: 73  ALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRWGQNR 132

Query: 116 LCQIVMRHVEVLAADTVI-SF-DSHGVSGHHNHARY 149
           + + ++R       D VI +F D  G  GH  H   
Sbjct: 133 IVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAM 166
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
           membrane-associated [Sinorhizobium meliloti]
 emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
           membrane-associated [Sinorhizobium meliloti]
          Length = 228

 Score = 94.4 bits (233), Expect = 8e-19
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNG---NFDGLGKIRAR-ELSRAAS 88
           R L++  HPDDE +    TI  L   G  VFV  ++ G    FD     R + E  +A  
Sbjct: 10  RTLVVAPHPDDEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATARIQAEARQAHR 69

Query: 89  KLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
            LG++ +  + L   + A         +   ++  V  L+  TV+         H +H
Sbjct: 70  ALGVTETIWLRLPAAQLA---ETAHATVNAALLELVHRLSPQTVLL--PFVGDMHMDH 122
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
           mediterranei]
          Length = 255

 Score = 91.3 bits (225), Expect = 7e-18
 Identities = 29/134 (21%), Positives = 47/134 (34%), Gaps = 22/134 (16%)

Query: 37  LIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD-----------GLGKIRARELSR 85
             AHP+D+T      +R   + GHRV ++  + G               LG  RA E   
Sbjct: 7   FHAHPNDDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVEARA 66

Query: 86  AASKLGISASDVICLDYDEFADG---------DTWNRNALCQIVMRHVEVLAADTVISFD 136
           AA  LG+    +  L Y +              T +     + +   +    AD +  +D
Sbjct: 67  AADVLGVD--RLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTVYD 124

Query: 137 SHGVSGHHNHARYR 150
             G  G  +H +  
Sbjct: 125 EKGTYGDPDHIQVH 138
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
 dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
          Length = 229

 Score = 90.9 bits (224), Expect = 1e-17
 Identities = 30/121 (24%), Positives = 48/121 (38%), Gaps = 14/121 (11%)

Query: 33  RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG------LGKIRARELSRA 86
           +IL L AHPDD  +F   T+      G  +     ++G   G      L ++R  E + A
Sbjct: 2   KILALGAHPDDIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAA 61

Query: 87  ASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
           A  LG +        + +F DG+     AL   +   +     D VI+   +    H +H
Sbjct: 62  AGLLGAAP------RFLDFPDGELVADAALIGALKTLIAGTGPDLVITHAPNDY--HADH 113

Query: 147 A 147
            
Sbjct: 114 R 114
>ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Deinococcus
           radiodurans]
 pir||A75600 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF12252.1|AE001862_78 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
          Length = 350

 Score = 70.7 bits (172), Expect = 1e-11
 Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 19/97 (19%)

Query: 27  PLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNG---------------- 70
           P  +  R+LLL  HPDDET+    T++    AG  VF+  ++ G                
Sbjct: 56  PFRAGQRVLLLAPHPDDETLCCGGTVQQARAAGAEVFIAWMTAGDGFEFDAALTEHVLVP 115

Query: 71  ---NFDGLGKIRARELSRAASKLGISASDVICLDYDE 104
              N   LG+ RA E  RAA+ LG+ A     L Y +
Sbjct: 116 RPHNMRALGQTRAGEAERAAAVLGVPADHTFMLGYPD 152
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
 pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
 gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
          Length = 232

 Score = 63.3 bits (153), Expect = 2e-09
 Identities = 28/128 (21%), Positives = 44/128 (33%), Gaps = 21/128 (16%)

Query: 36  LLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG----------LGKIRARELSR 85
           ++  HPDDE +     + AL +AG  V+ L +++G F            L  +R  E   
Sbjct: 15  VVAPHPDDEALGCGALLAALAEAGREVWALLLTDGGFSHPASKAYPRPRLSAVRLAEWRE 74

Query: 86  AASKLGISASDVICLDYDEFADGDTWNRNALC----QIVMRHVEVLAADTVISFDSHGVS 141
             S LG+  +  + L      DG       L       V +        TV+        
Sbjct: 75  GLSVLGVPPARTVAL---GLPDGAL--GEHLTAAARAQVRQAFAQARPGTVLL--PWERD 127

Query: 142 GHHNHARY 149
            H +H   
Sbjct: 128 PHPDHRAA 135
CPU time:    56.11 user secs.	    2.23 sys. secs	   58.34 total secs.

  Database: nr
    Posted date:  Apr 21, 2002  2:19 PM
  Number of letters in database: 277,845,442
  Number of sequences in database:  887,402
  
Lambda     K      H
   0.316    0.184    0.555 

Gapped
Lambda     K      H
   0.270   0.0646    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118910166
Number of Sequences: 887402
Number of extensions: 6375897
Number of successful extensions: 34173
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 33935
Number of HSP's gapped (non-prelim): 122
length of query: 151
length of database: 277,845,442
effective HSP length: 51
effective length of query: 100
effective length of database: 232,587,940
effective search space: 23258794000
effective search space used: 23258794000
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.7 bits)
S2: 70 (31.2 bits)