Sequences with E-value BETTER than threshold (0.002) 161 5e-39
155 4e-37
151 6e-36
151 6e-36
141 6e-33
136 1e-31
136 3e-31
134 7e-31
133 2e-30
133 2e-30
132 4e-30
131 7e-30
130 1e-29
123 1e-27
122 3e-27
122 4e-27
121 5e-27
121 6e-27
120 1e-26
118 4e-26
117 1e-25
117 1e-25
115 6e-25
113 1e-24
113 2e-24
113 2e-24
112 4e-24
112 4e-24
111 4e-24
111 4e-24
110 1e-23
109 2e-23
109 3e-23
109 3e-23
108 4e-23
107 1e-22
104 7e-22
103 1e-21
103 1e-21
102 4e-21
100 1e-20
99 2e-20
100 3e-20
98 8e-20
98 1e-19
94 8e-19
91 7e-18
91 1e-17
71 1e-11
63 2e-09
Alignments
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
deacetylase [Schizosaccharomyces pombe]
Length = 248
Score = 161 bits (405), Expect = 5e-39
Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 7 LIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRAL-LQAGHRVFVL 65
L+VT + VL S L +S IL + AHPDDE+MFF PTI L Q RV VL
Sbjct: 8 LLVTAIAVLSTANESSSGQEKLAVES-ILFVFAHPDDESMFFGPTIDYLGNQHSTRVHVL 66
Query: 66 CISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDT--WNRNALCQIVMRH 123
C+SNGN DGLG +R +EL AASK I ++V + + DG W+ + + + +
Sbjct: 67 CLSNGNADGLGSVREKELVVAASKYQIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQI 126
Query: 124 VEVLAADTVISFDSHGVSGHHNHARY 149
+E T+I+FD+ G+SGH NH
Sbjct: 127 IERYNIKTLITFDNKGISGHPNHIAC 152
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
Length = 252
Score = 155 bits (389), Expect = 4e-37
Identities = 58/153 (37%), Positives = 87/153 (55%), Gaps = 12/153 (7%)
Query: 7 LIVTLLLVLLLIFA----------VRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALL 56
L+ L VL F R L ++SR LL+IAHPDDE MFF+PT+ L
Sbjct: 6 LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPTVLGLA 65
Query: 57 QAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFAD--GDTWNRN 114
+ H V++LC S GN+ G+ R +EL ++ LGI S V+ +D +F D G W+
Sbjct: 66 RLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGMQWDTE 125
Query: 115 ALCQIVMRHVEVLAADTVISFDSHGVSGHHNHA 147
+ +++++H+EV + V++FD+ GVSGH NH
Sbjct: 126 HVARVLLQHIEVNGINLVVTFDAGGVSGHSNHI 158
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
Length = 151
Score = 151 bits (380), Expect = 6e-36
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MLPLILLIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGH 60
MLPLILLIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGH
Sbjct: 1 MLPLILLIVTLLLVLLLIFAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGH 60
Query: 61 RVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIV 120
RVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIV
Sbjct: 61 RVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIV 120
Query: 121 MRHVEVLAADTVISFDSHGVSGHHNHARYRP 151
MRHVEVLAADTVISFDSHGVSGHHNHARYRP
Sbjct: 121 MRHVEVLAADTVISFDSHGVSGHHNHARYRP 151
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
Length = 252
Score = 151 bits (379), Expect = 6e-36
Identities = 55/153 (35%), Positives = 82/153 (52%), Gaps = 12/153 (7%)
Query: 7 LIVTLLLVLLLIFA----------VRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALL 56
L+ + VL F + SR L++IAHPDDE MFF+PTI L
Sbjct: 6 LLCVAVAVLTWGFLRVWNSAERMRSPEQAGLPGAGSRALVVIAHPDDEAMFFAPTILGLA 65
Query: 57 QAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGD--TWNRN 114
+ +V +LC S+GN+ G+IR +EL ++ + LGI S V+ +D EF D W+
Sbjct: 66 RLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQWDTE 125
Query: 115 ALCQIVMRHVEVLAADTVISFDSHGVSGHHNHA 147
+ +++H+ A D V++FD+ GVSGH NH
Sbjct: 126 HVASTILQHIHANATDLVVTFDAEGVSGHSNHI 158
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
Length = 293
Score = 141 bits (354), Expect = 6e-33
Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 27/149 (18%)
Query: 28 LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG------------- 74
+ Q R++ + AHPDDE+ + T+ + G V V+ + G
Sbjct: 1 MTDQLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIE 60
Query: 75 --LGKIRARELSRAASKLGISASDVICLDYDEFADGD-----------TWNRNALCQIVM 121
+ ++R +E+ A LG+ + +D +GD + + ++
Sbjct: 61 ENIHEVRRKEMDEAREILGVGQEWLGFVDS-GLPEGDPLPPLPEGCFALEDVDKAAGELV 119
Query: 122 RHVEVLAADTVISFDSHGVSGHHNHARYR 150
R + + ++D +G H +H
Sbjct: 120 RKIRSFRPQVITTYDENGGYPHPDHIMTH 148
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 267
Score = 136 bits (342), Expect = 1e-31
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 27 PLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------LGK 77
P ++L + HPDD + TI+ L + G V C+++G L
Sbjct: 27 PFKDVEKVLCIEPHPDDCVIGMGGTIKKLTERGIEVIYACMTDGYMGTLDSSLTGHELAT 86
Query: 78 IRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDS 137
IR RE ++ LG+ + E + + ++R + D V D
Sbjct: 87 IRRREEEESSKLLGVKKIYWLNYRDTELPYS-----REVRKDLVRIIRKEKPDGVFLPDP 141
Query: 138 H-GVSGHHNHARY 149
H +H
Sbjct: 142 WLPYEAHPDHRNT 154
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
Length = 288
Score = 136 bits (340), Expect = 3e-31
Identities = 31/145 (21%), Positives = 58/145 (39%), Gaps = 24/145 (16%)
Query: 30 SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNF--------------DGL 75
S+ R++ + AHPDDE+ + T+ GHRV V+ ++ G +
Sbjct: 2 SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRI 61
Query: 76 GKIRARELSRAASKLGISASDVICLDY--------DEFADG--DTWNRNALCQIVMRHVE 125
+IR E+++AA LG+ + + +D D + ++R V
Sbjct: 62 AEIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVR 121
Query: 126 VLAADTVISFDSHGVSGHHNHARYR 150
+ ++D +G H +H R
Sbjct: 122 EFRPHVMTTYDENGGYPHPDHIRCH 146
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 134 bits (336), Expect = 7e-31
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 25 PIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------L 75
P ++L + HPDD + TI+ L G V +C+++G L
Sbjct: 29 QNPFKDAKKVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYVCMTDGYMGTTDESLSGHEL 88
Query: 76 GKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF 135
IR +E +A LG+ + E + + + + + D V +
Sbjct: 89 AAIRRKEEEESARLLGVKKIYWLNYRDTELPYS-----REVRKDLTKILRKEQPDGVFAP 143
Query: 136 DSH-GVSGHHNHARY 149
D H +H R
Sbjct: 144 DPWLPYESHPDHRRT 158
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 267
Score = 133 bits (333), Expect = 2e-30
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 26 IPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------LG 76
P +++ + HPDD + TI+ L G V +C+++G L
Sbjct: 26 NPFEDAKKVICIEPHPDDCAIGMGGTIKKLSDEGVEVIYICMTDGYMGTTDEKLSGHELA 85
Query: 77 KIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFD 136
IR RE +A LG+ + E + + +++ + D V + D
Sbjct: 86 LIRRREEEESAKLLGVRKIYWLNYRDTELPYS-----REVRKDLVKIIRKEKPDGVFAPD 140
Query: 137 SH-GVSGHHNHARY 149
H +H R
Sbjct: 141 PWLPYESHPDHRRT 154
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
Length = 290
Score = 133 bits (333), Expect = 2e-30
Identities = 30/145 (20%), Positives = 57/145 (38%), Gaps = 24/145 (16%)
Query: 30 SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNF--------------DGL 75
S+ R++ + AHPDDE+ + T+ GHRV V+ ++ G +
Sbjct: 2 SELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGHI 61
Query: 76 GKIRARELSRAASKLGISASDVICLDYDEFADG----------DTWNRNALCQIVMRHVE 125
+IR E+++AA LG+ + + +D + ++R V
Sbjct: 62 AEIRRDEMAKAAEILGVEHTWLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVVR 121
Query: 126 VLAADTVISFDSHGVSGHHNHARYR 150
+ ++D +G H +H R
Sbjct: 122 KFRPHVLTTYDENGGYPHPDHIRCH 146
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 308
Score = 132 bits (330), Expect = 4e-30
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 28/146 (19%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN----------------FDGLG 76
R+L + AHPDDE++ TI G +V V+ + G D LG
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65
Query: 77 KIRARELSRAASKLGISASDVI--CLDYDEFADG----------DTWNRNALCQIVMRHV 124
R EL+ A LG+SA + + + + N ++ +
Sbjct: 66 GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125
Query: 125 EVLAADTVISFDSHGVSGHHNHARYR 150
L V+++D HG GH +H
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTH 151
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
cerevisiae)
emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
Length = 304
Score = 131 bits (328), Expect = 7e-30
Identities = 49/167 (29%), Positives = 82/167 (48%), Gaps = 23/167 (13%)
Query: 5 ILLIVTLLLVLLLIFAVRSHPIPLLSQS--------------RILLLIAHPDDETMFFSP 50
+L +T L ++L I + P + + I L+IAHPDDE MFFSP
Sbjct: 14 LLYKITKLAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSP 73
Query: 51 TIRALLQAGHRVF---VLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFAD 107
I L R ++C+S GN +GLG+ R REL+ +A+ L + + + +F D
Sbjct: 74 IISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL-LHNERAVSVQVMDFQD 132
Query: 108 GDT--WNRNALCQIVMRHVEVLAA---DTVISFDSHGVSGHHNHARY 149
G W+ +++ + + +++ +++FDS+GVS H NH
Sbjct: 133 GMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSC 179
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75517 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
Length = 281
Score = 130 bits (326), Expect = 1e-29
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 26/151 (17%)
Query: 21 VRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------- 73
S P P ++ +L++ AHPDDE T+ + G RV + C + G
Sbjct: 3 SSSTPAP---RATLLVIFAHPDDEAFSVGGTLTHYARQGVRVVLACATRGEAGKITVPGM 59
Query: 74 ---GLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQ-----------I 119
LG R +EL A L I + LDY + + +
Sbjct: 60 TVDDLGAQREQELREACRALEIEPP--VFLDYHDSGRYERTRHDDPTALMNVNPLDAEVK 117
Query: 120 VMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
+ +E + +++FD HG GH +H +
Sbjct: 118 LRALIEDVQPQVIVTFDPHGAYGHVDHLQMH 148
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
Length = 223
Score = 123 bits (308), Expect = 1e-27
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 26/147 (17%)
Query: 7 LIVTLLLVLLLIFAVRSHPIPL--LSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFV 64
++V L ++++I+ I S SR +L D+ FFSPTI + +
Sbjct: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATIL-----DDGKFFSPTINYFTSTACNLHI 55
Query: 65 LCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHV 124
LC S GN DG+G IR +EL RA + L + I D + D D+ C H+
Sbjct: 56 LCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDKEGICDNDS------CHCNEEHI 104
Query: 125 EVLAADTVISFDSHGVSGHHNHARYRP 151
I+FD++GV GH NH P
Sbjct: 105 --------ITFDNYGVWGHCNHRDVHP 123
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 221
Score = 122 bits (305), Expect = 3e-27
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 28 LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------GL 75
+ + +L++ HPDDET + T+ + +Q G V C++ G L
Sbjct: 1 MTDERHVLVIFPHPDDETFSSAGTLASYIQKGIPVTYACLTLGQMGRNLGNPPFATRESL 60
Query: 76 GKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF 135
IR REL A +GI+ + L + + ++ ++ +ISF
Sbjct: 61 PSIRERELEEACKVIGITDLRKMGLRD---KTVEFEPYEHIDGMIKSLIDDTNPSLIISF 117
Query: 136 DSHGVSGHHNH 146
G + H +H
Sbjct: 118 YP-GYAVHPDH 127
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
Length = 390
Score = 122 bits (305), Expect = 4e-27
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 31 QSRILLLIAHPDDETMFFSPTIRALLQ-AGHRVFVLCISNGN------------------ 71
R+LL+ AHPDDE MFF P I +L Q G +V++LC+SNG
Sbjct: 139 MERVLLITAHPDDECMFFGPLIYSLTQRQGCQVYILCLSNGETTSSDIIPKPPIDLEALN 198
Query: 72 ---FDGLGKIRARELSRAASKLGISASDVICLDYDEFADGD--TWNRNALCQIVMRHVEV 126
F+ K+R +EL R+ SKLGI S+++ ++ D W +A+ +++ +E
Sbjct: 199 ESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVASLILHTIES 258
Query: 127 LAADTVISFDSHGVSGHHNH 146
L + +FD GVS H NH
Sbjct: 259 LDIQAIFTFDRDGVSSHPNH 278
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75562 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
Length = 237
Score = 121 bits (303), Expect = 5e-27
Identities = 31/130 (23%), Positives = 58/130 (43%), Gaps = 12/130 (9%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG----------LGKIRARE 82
++LL++ HPDDE S T+ L AG ++ ++ G L ++RA E
Sbjct: 14 KLLLIVPHPDDEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCDGPEELARMRAVE 73
Query: 83 LSRAASKLGISASDVICLDYDEFADG--DTWNRNALCQIVMRHVEVLAADTVISFDSHGV 140
L+ +G++ + + +F D + L + +E L +TV++F +G
Sbjct: 74 LAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAREAMERLRPETVLTFPPNGS 133
Query: 141 SGHHNHARYR 150
+GH +H
Sbjct: 134 NGHPDHMTTH 143
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
Length = 303
Score = 121 bits (303), Expect = 6e-27
Identities = 31/141 (21%), Positives = 52/141 (35%), Gaps = 28/141 (19%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN----------------FDGLG 76
R+L + AHPDDE++ TI G +V V+ + G D LG
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65
Query: 77 KIRARELSRAASKLGISASDVI--CLDYDEFADG----------DTWNRNALCQIVMRHV 124
R EL+ A LG+SA + + + + ++ +
Sbjct: 66 GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125
Query: 125 EVLAADTVISFDSHGVSGHHN 145
L V+++D +G GH +
Sbjct: 126 RELRPHVVVTYDPNGGYGHPD 146
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 120 bits (300), Expect = 1e-26
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 28 LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------GL 75
+ + +L++ HPDDE S TI + G V C++ G L
Sbjct: 1 MNQERHVLVIFPHPDDEAFGVSGTIALFRKQGVPVTYACLTLGEMGRNLGNPPFATRESL 60
Query: 76 GKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF 135
IR +EL ++A +GI D+ L Y + + + L +V + L +I+F
Sbjct: 61 PDIRKKELIKSAEAMGI--EDLRMLGYRD-KTIEFEDETKLTDMVSDLMAELNPSLIITF 117
Query: 136 DSHGVSGHHNH 146
G S H +H
Sbjct: 118 YP-GYSVHPDH 127
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 295
Score = 118 bits (296), Expect = 4e-26
Identities = 27/151 (17%), Positives = 55/151 (35%), Gaps = 28/151 (18%)
Query: 28 LLS--QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------ 73
+ R+LL+ AHPDDE++ T+ G V ++ + G
Sbjct: 1 MTDLPGRRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSG 60
Query: 74 -GLGKIRARELSRAASKLGISASDVIC--LDYDEFADGDTWNRNA-----------LCQI 119
LG R EL+ A LG+ ++ Y + + + +
Sbjct: 61 AALGGHRRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAAL 120
Query: 120 VMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
++ + + ++++D +G GH +H +
Sbjct: 121 LVDVIREVRPQVLVTYDPNGGYGHPDHIQAH 151
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 117 bits (292), Expect = 1e-25
Identities = 26/122 (21%), Positives = 43/122 (34%), Gaps = 8/122 (6%)
Query: 30 SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKI--RARELSRAA 87
S+ IL AHPDD + T+ Q GHRV + ++ G + R +E + A+
Sbjct: 2 SKLDILAFGAHPDDVEIGMGATLYHYRQKGHRVGICNLTKAELSSNGTVEQRQKEAADAS 61
Query: 88 SKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHA 147
LGI + L + + ++ F + V H +H
Sbjct: 62 RILGIDERIQLDLPDRGLRNPSEQQVRNIVSVIRH------CQPTFVFVPYPVDRHPDHG 115
Query: 148 RY 149
Sbjct: 116 HC 117
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
proteins [Bacillus subtilis]
sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 117 bits (291), Expect = 1e-25
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 31 QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKI--RARELSRAAS 88
+ +L AH DD + TI ++ +V + ++ G + R E + AA
Sbjct: 3 NADVLAFGAHSDDVEIGMGGTIAKFVKQEKKVMICDLTEAELSSNGTVSLRKEEAAEAAR 62
Query: 89 KLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
LG + L D + ++ + + V F + H +H
Sbjct: 63 ILGADKRIQLTLPDRGLIMSDQA-----IRSIVTVIRICRPKAV--FMPYKKDRHPDH 113
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 115 bits (286), Expect = 6e-25
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 31 QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLG--KIRARELSRAAS 88
+L++ HPDD + T+ G +L ++ G G + R +E++ A+
Sbjct: 1 MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASR 60
Query: 89 KLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
LG+ F DG + + + + L V F H +H
Sbjct: 61 ILGLD-----FRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVV--FAPLEADRHPDH 111
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
Length = 277
Score = 113 bits (283), Expect = 1e-24
Identities = 29/151 (19%), Positives = 53/151 (34%), Gaps = 30/151 (19%)
Query: 28 LLSQ-SRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISN------------GNFDG 74
+ + ++ + AHPDDE + G R ++ ++ G+
Sbjct: 1 MTDRPLTLMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGH 60
Query: 75 ----LGKIRARELSRAASKLGISASDVICLDYDEFAD---------GDTW--NRNALCQI 119
+ +R REL + L I SD+ LDY + G W
Sbjct: 61 DPAAVALMRRRELEESRDILKI--SDLETLDYADSGMMGWPSNDAPGSFWRTPVEEGAAR 118
Query: 120 VMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
+ + D V+++D +G GH +H +
Sbjct: 119 LAELMRHYRPDVVVTYDENGFYGHPDHIQAH 149
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
Length = 185
Score = 113 bits (281), Expect = 2e-24
Identities = 47/158 (29%), Positives = 67/158 (41%), Gaps = 37/158 (23%)
Query: 7 LIVTLLLVLLLIFAVRSHPIPL--LSQSRILLLIAHPDD--ETM----------FFSPTI 52
++V L ++++I+ I S SR +L DD E FFSPTI
Sbjct: 1 MVVVFLSLIVVIWVASFFKIFFRATSISRATIL----DDGKEEKCDVFMDMLDRFFSPTI 56
Query: 53 RALLQAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWN 112
+ +LC S GN DG+G IR +EL RA + L + I D + D D+
Sbjct: 57 NYFTSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKV-----IPFDKEGICDNDS-- 109
Query: 113 RNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
C H+ I+FD++GV GH NH
Sbjct: 110 ----CHCNEEHI--------ITFDNYGVWGHCNHRDVH 135
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 124
Score = 113 bits (281), Expect = 2e-24
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 47 FFSPTIRALLQAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFA 106
FFSPTI L + +LC+S GN DG+G IR EL RA + L + + L++
Sbjct: 7 FFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQ 66
Query: 107 D--GDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARYR 150
D G W+ + L +I+ V T+I+FD++GVSGH NH
Sbjct: 67 DGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVH 112
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 112 bits (279), Expect = 4e-24
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 31 QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG----------LGKIRA 80
R+L++ HPDDET+ TI+ + G+++ V+ +++G + L +IR
Sbjct: 7 MRRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRR 66
Query: 81 RELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGV 140
+E RA LGI V L++++ + NAL + + + + F
Sbjct: 67 QEALRATKILGIDE--VKFLNFEDSKVSEEDAENALAEFLREND--------VVFSPIPF 116
Query: 141 SGHHNHAR 148
H +HA
Sbjct: 117 DNHPDHAN 124
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 112 bits (279), Expect = 4e-24
Identities = 24/118 (20%), Positives = 45/118 (37%), Gaps = 9/118 (7%)
Query: 34 ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLG--KIRARELSRAASKLG 91
L AHPDD + T+ ++ G V V ++ G LG + R +E + A ++G
Sbjct: 12 ALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMG 71
Query: 92 ISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARY 149
+ + + D + + ++R + DTV H +H +
Sbjct: 72 Y-----VAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPD--ERHPDHMKA 122
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
Length = 250
Score = 111 bits (278), Expect = 4e-24
Identities = 24/118 (20%), Positives = 45/118 (37%), Gaps = 9/118 (7%)
Query: 34 ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLG--KIRARELSRAASKLG 91
L AHPDD + T+ ++ G V V ++ G LG + R +E + A ++G
Sbjct: 12 ALAFGAHPDDVELACGATLLKIMDEGKPVAVCDLTAGEMGTLGTAETRRQEAALATERMG 71
Query: 92 ISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARY 149
+ + + D + + ++R + DTV H +H +
Sbjct: 72 Y-----VAREQLDLGDSELFYTKESLHKIIRIIRKYRPDTVFCNPPD--ERHPDHMKA 122
>ref|NP_561406.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80196.1| (AP003187) conserved hypothetical protein [Clostridium perfringens]
Length = 601
Score = 111 bits (278), Expect = 4e-24
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 2 LPLILLIVTLLLVLLLI-------FAVRSHPIPLLSQSRILLLIAHPDDETMFFSPTIRA 54
+ +I+ + + L + F+ + + I++++ H DDE TI+
Sbjct: 14 ISIIIFCIVMTLFISTANMDYGSNFSNSIDYSEMWTNKEIMVIVPHQDDEINLAGATIKR 73
Query: 55 LLQAGHRVFVLCISNGNFDGLGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRN 114
L+ G+ V V+ +NG+F GLG R +E A LG+++ +VI L Y GD W
Sbjct: 74 LIDNGNNVKVVFATNGDFKGLGTKRIKEAVEAVRILGVNSENVIFLGY-----GDRW--- 125
Query: 115 ALCQIVMRHVEVLAADTVI 133
+ H+ + +I
Sbjct: 126 ---EETKEHIYNSDDNKII 141
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
Length = 252
Score = 110 bits (275), Expect = 1e-23
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN-FDGLGKIRARELSRAASKLG 91
RI+ + AHPDDE + T+ + G V ++ + G G E+ R + G
Sbjct: 2 RIMAVFAHPDDE-IGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHG 60
Query: 92 ISASDVICLDYDEFADGDT--WNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNHARY 149
+D I Y F GD+ + R VI++ H +H
Sbjct: 61 AWVADKIGAKYHFFDMGDSRMTGGRDEALQLARLYATFRPHAVITWSDD--HPHPDHRMT 118
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 109 bits (272), Expect = 2e-23
Identities = 28/132 (21%), Positives = 49/132 (36%), Gaps = 17/132 (12%)
Query: 30 SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD--GL-----GKIRARE 82
R L ++AHPDD + I A G V + + G L +R RE
Sbjct: 15 DWRRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGIDTLAPAECAPLRERE 74
Query: 83 LSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISF---DSHG 139
+A+ +G+S +++ + DG AL + + + + VI+ D+ G
Sbjct: 75 QRASAAVVGVSE-----VEFLDHRDGVVEYGTALRRDIAAAIRRHRPELVITMNHRDTWG 129
Query: 140 V--SGHHNHARY 149
+H
Sbjct: 130 GVAWNTPDHVAV 141
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
tuberculosis H37Rv]
pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
H37Rv]
Length = 223
Score = 109 bits (271), Expect = 3e-23
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG-------LGKIRARELSR 85
+L + AHPDDE+ + G R+ LC ++G LG++R EL+
Sbjct: 12 EVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAA 71
Query: 86 AASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHN 145
AA LG+ ++ + A N L Q V+ + AD ++ FD +GV+GH +
Sbjct: 72 AAQVLGVDHVQLLAYPDNGLA---QIPLNELTQRVVDALA--GADLLLVFDDNGVTGHPD 126
Query: 146 HAR 148
H R
Sbjct: 127 HRR 129
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 109 bits (271), Expect = 3e-23
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG-------LGKIRARELSR 85
+L + AHPDDE+ + G R+ LC ++G LG++R EL+
Sbjct: 12 EVLAVFAHPDDESFGLGAVLGDFTAQGTRLRGLCFTHGEASTLGRTDRNLGEVRREELAA 71
Query: 86 AASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHN 145
AA LG+ ++ + A N L Q V+ + AD ++ FD +GV+GH +
Sbjct: 72 AAQVLGVDHVQLLAYPDNGLA---QIPLNELTQRVVDALA--GADLLLVFDDNGVTGHPD 126
Query: 146 HAR 148
H R
Sbjct: 127 HRR 129
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
Length = 221
Score = 108 bits (270), Expect = 4e-23
Identities = 23/129 (17%), Positives = 48/129 (36%), Gaps = 16/129 (12%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD------------GLGKIRA 80
+L+++ HPDDE+ + I + V C + G L +R
Sbjct: 4 HVLVILPHPDDESYGVAGLIALNRKKDIPVTYACATLGEMGRNMGDPFFANRETLPLLRK 63
Query: 81 RELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGV 140
+EL A ++ I+ ++ L + + L I+ ++ + +++F G
Sbjct: 64 QELINACKEMDINDLRMLGLRDKTL---EFEDDEYLADIMEEIIDDVKPSLIVTFYP-GH 119
Query: 141 SGHHNHARY 149
H +H
Sbjct: 120 GVHPDHDAC 128
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
radiodurans]
Length = 239
Score = 107 bits (266), Expect = 1e-22
Identities = 25/114 (21%), Positives = 40/114 (34%), Gaps = 9/114 (7%)
Query: 35 LLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGK--IRARELSRAASKLGI 92
L L HPDD + T+ L QAG V +L ++ G G R E AA +
Sbjct: 18 LCLAPHPDDAEIGAGGTLIRLAQAGRAVGILELTRGEKGTQGTPAERQAECVAAARLM-- 75
Query: 93 SASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
D+ DG+ + + + + ++ H H +H
Sbjct: 76 ---DLSWRGQLGLPDGELADTPPFAHALAAALRTVRPRVLVV--PHWHDRHPDH 124
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 221
Score = 104 bits (259), Expect = 7e-22
Identities = 26/125 (20%), Positives = 49/125 (38%), Gaps = 18/125 (14%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG---------LGKIRAREL 83
RIL + HPDDE T+ L H ++++ +++G+ L +IR +E
Sbjct: 2 RILFISPHPDDECDNAGGTLAKLA-KSHEIYIVYMTDGSAGSPNPEERGEKLAEIRRKEA 60
Query: 84 SRAASKLGISASDVICLDYDE--FADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVS 141
LGI + L+Y + + +I+ + +I +
Sbjct: 61 LEGLKVLGIKKDNAFFLNYPDTKLRFHIREASERVAKILREI----KPNIII--YPSLLD 114
Query: 142 GHHNH 146
GH++H
Sbjct: 115 GHNDH 119
>emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces rochei]
Length = 234
Score = 103 bits (257), Expect = 1e-21
Identities = 24/128 (18%), Positives = 47/128 (35%), Gaps = 12/128 (9%)
Query: 28 LLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGK-----IRARE 82
+ + +L++ HPDD+ + ++ ++ G RV V+ + L A E
Sbjct: 1 MTGVTDVLVVAPHPDDDVIGCGGSMAKHVREGARVTVVVVIGRERSALDDAVTEAEFAAE 60
Query: 83 LSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSG 142
AA LG+ C+ +DE + D + ++R + + V + H
Sbjct: 61 TENAAKILGVH----RCVRFDESS-RDFAPSRRIHLDLVRVLREVRPQVV--YLPHDNDD 113
Query: 143 HHNHARYR 150
H
Sbjct: 114 DVEHRMVH 121
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
Length = 218
Score = 103 bits (257), Expect = 1e-21
Identities = 23/117 (19%), Positives = 41/117 (34%), Gaps = 7/117 (5%)
Query: 31 QSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGN-FDGLGKIRARELSRAASK 89
+ +L+++AHPDD + I G V V C++ G ++R +E A
Sbjct: 1 MTSVLVVVAHPDDAEIAMGMRIHWYALNGATVRVHCLTTGTPAPDGTEVRRQECLSAGEL 60
Query: 90 LGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
LG+ + F NR + + D + + H +H
Sbjct: 61 LGVDQYTFSSIPDTRF----VENRGRINADLFDVFREARPDIIYTHYPD--DQHLDH 111
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 292
Score = 102 bits (253), Expect = 4e-21
Identities = 28/137 (20%), Positives = 51/137 (36%), Gaps = 13/137 (9%)
Query: 22 RSHPIPLLSQSRILLLI-AHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG------ 74
R P + S ++ HPDDET+ L +G V + +++G
Sbjct: 37 RFKPFDVADWSASSVIFAPHPDDETLGCGGVSAKKLASGVEVRFVFVTDGAASHRRLISP 96
Query: 75 --LGKIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTV 132
L R E A +LG S+ V L + + + +A+ + ++ +E +V
Sbjct: 97 EELRSRRESEALEAVHRLGASSESVTFLRFPDAEAS--HHIHAITKAIVPLLERWRPQSV 154
Query: 133 ISFDSHGVSGHHNHARY 149
F +H +H
Sbjct: 155 --FVTHAKDPPSDHIAV 169
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
Length = 185
Score = 100 bits (248), Expect = 1e-20
Identities = 25/120 (20%), Positives = 45/120 (36%), Gaps = 8/120 (6%)
Query: 34 ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDGLGKI-RARELSRAASKLGI 92
IL + AHPDD + ++ L Q G + + ++ GN G I R E A LG
Sbjct: 19 ILAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGC 78
Query: 93 SASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAA---DTVISFDSHGVSGHHNHARY 149
+ I L++ + N + + ++ + + + H H +H
Sbjct: 79 HQT--IHLNFADTRAHLQ--LNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHLAV 134
>pir||S44952 lmbE protein - Streptomyces lincolnensis
pir||S69814 lmbE protein - Streptomyces lincolnensis
emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
Length = 270
Score = 99 bits (247), Expect = 2e-20
Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 26/140 (18%)
Query: 34 ILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD--------------GLGKIR 79
+L + AHPDDE T+ G R ++ ++G +R
Sbjct: 5 LLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVR 64
Query: 80 ARELSRAASKLGISASDVICLDYDEFADG---------DTWNRNALCQIVMRHVEVLAAD 130
+ EL +A LG SA V L Y + + + R + D
Sbjct: 65 SAELDASARNLGYSA--VHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPD 122
Query: 131 TVISF-DSHGVSGHHNHARY 149
VI + +H H +H R
Sbjct: 123 VVIGYGTNHTRDPHPDHIRA 142
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
Length = 247
Score = 99.5 bits (246), Expect = 3e-20
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 11/138 (7%)
Query: 23 SHPIPLL----SQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD--GLG 76
S P PL R L ++AHPDD S + + + G V L + G L
Sbjct: 4 SAPAPLRSMPDDWRRALAVVAHPDDLEYGCSAAVASWVADGKDVAYLLATRGEAGIDTLD 63
Query: 77 KIRARELSRAASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFD 136
RA L A + +A V +++ + DG +L + + V + VI+ +
Sbjct: 64 PGRAGPLREAEQRAAAAAVGVRAVEFLDHRDGVIEYGASLRRDIAAAVRRHRPELVITLN 123
Query: 137 -----SHGVSGHHNHARY 149
+ G +H
Sbjct: 124 HRDTWAAGAWNTPDHVAV 141
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 815
Score = 98.0 bits (242), Expect = 8e-20
Identities = 40/156 (25%), Positives = 60/156 (37%), Gaps = 30/156 (19%)
Query: 19 FAVRSHPIPLLSQSRILLLI--AHPDDETMFFSPTIRAL-LQAGHRVFVLCISNGN---- 71
+ +R H +S + ++ AHPDDE + + G R + C + G
Sbjct: 31 WLIRLHRKLSALKSTVTVMHTGAHPDDEQN---GLLAYFRTELGMRTIIACSTRGEGGQN 87
Query: 72 ------FDGLGKIRARELSRAASKLGISASDV------ICLDYDEFADGDT----WNRNA 115
LG IR+REL AA + S + I D+ DGD W +N
Sbjct: 88 ALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRWGQNR 147
Query: 116 LCQIVMRHVEVLAADTVI-SF-DSHGVSGHHNHARY 149
+ + ++R D VI +F D G GH H
Sbjct: 148 IVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAM 181
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 800
Score = 97.6 bits (241), Expect = 1e-19
Identities = 40/156 (25%), Positives = 60/156 (37%), Gaps = 30/156 (19%)
Query: 19 FAVRSHPIPLLSQSRILLLI--AHPDDETMFFSPTIRAL-LQAGHRVFVLCISNGN---- 71
+ +R H +S + ++ AHPDDE + + G R + C + G
Sbjct: 16 WLIRLHRKLSALKSTVTVMHTGAHPDDEQN---GLLAYFRTELGMRTIIACSTRGEGGQN 72
Query: 72 ------FDGLGKIRARELSRAASKLGISASDV------ICLDYDEFADGDT----WNRNA 115
LG IR+REL AA + S + I D+ DGD W +N
Sbjct: 73 ALGPERLGALGVIRSRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRWGQNR 132
Query: 116 LCQIVMRHVEVLAADTVI-SF-DSHGVSGHHNHARY 149
+ + ++R D VI +F D G GH H
Sbjct: 133 IVERLVRAYRKERPDIVIPTFLDVPGQHGH--HRAM 166
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
Length = 228
Score = 94.4 bits (233), Expect = 8e-19
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNG---NFDGLGKIRAR-ELSRAAS 88
R L++ HPDDE + TI L G VFV ++ G FD R + E +A
Sbjct: 10 RTLVVAPHPDDEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATARIQAEARQAHR 69
Query: 89 KLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
LG++ + + L + A + ++ V L+ TV+ H +H
Sbjct: 70 ALGVTETIWLRLPAAQLA---ETAHATVNAALLELVHRLSPQTVLL--PFVGDMHMDH 122
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
mediterranei]
Length = 255
Score = 91.3 bits (225), Expect = 7e-18
Identities = 29/134 (21%), Positives = 47/134 (34%), Gaps = 22/134 (16%)
Query: 37 LIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFD-----------GLGKIRARELSR 85
AHP+D+T +R + GHRV ++ + G LG RA E
Sbjct: 7 FHAHPNDDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVEARA 66
Query: 86 AASKLGISASDVICLDYDEFADG---------DTWNRNALCQIVMRHVEVLAADTVISFD 136
AA LG+ + L Y + T + + + + AD + +D
Sbjct: 67 AADVLGVD--RLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTVYD 124
Query: 137 SHGVSGHHNHARYR 150
G G +H +
Sbjct: 125 EKGTYGDPDHIQVH 138
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 229
Score = 90.9 bits (224), Expect = 1e-17
Identities = 30/121 (24%), Positives = 48/121 (38%), Gaps = 14/121 (11%)
Query: 33 RILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG------LGKIRARELSRA 86
+IL L AHPDD +F T+ G + ++G G L ++R E + A
Sbjct: 2 KILALGAHPDDIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAA 61
Query: 87 ASKLGISASDVICLDYDEFADGDTWNRNALCQIVMRHVEVLAADTVISFDSHGVSGHHNH 146
A LG + + +F DG+ AL + + D VI+ + H +H
Sbjct: 62 AGLLGAAP------RFLDFPDGELVADAALIGALKTLIAGTGPDLVITHAPNDY--HADH 113
Query: 147 A 147
Sbjct: 114 R 114
>ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
pir||A75600 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12252.1|AE001862_78 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
Length = 350
Score = 70.7 bits (172), Expect = 1e-11
Identities = 31/97 (31%), Positives = 43/97 (43%), Gaps = 19/97 (19%)
Query: 27 PLLSQSRILLLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNG---------------- 70
P + R+LLL HPDDET+ T++ AG VF+ ++ G
Sbjct: 56 PFRAGQRVLLLAPHPDDETLCCGGTVQQARAAGAEVFIAWMTAGDGFEFDAALTEHVLVP 115
Query: 71 ---NFDGLGKIRARELSRAASKLGISASDVICLDYDE 104
N LG+ RA E RAA+ LG+ A L Y +
Sbjct: 116 RPHNMRALGQTRAGEAERAAAVLGVPADHTFMLGYPD 152
>ref|NP_285456.1| (NC_001264) hypothetical protein [Deinococcus radiodurans]
pir||G75608 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF12317.1|AE001862_143 (AE001862) hypothetical protein [Deinococcus radiodurans]
Length = 232
Score = 63.3 bits (153), Expect = 2e-09
Identities = 28/128 (21%), Positives = 44/128 (33%), Gaps = 21/128 (16%)
Query: 36 LLIAHPDDETMFFSPTIRALLQAGHRVFVLCISNGNFDG----------LGKIRARELSR 85
++ HPDDE + + AL +AG V+ L +++G F L +R E
Sbjct: 15 VVAPHPDDEALGCGALLAALAEAGREVWALLLTDGGFSHPASKAYPRPRLSAVRLAEWRE 74
Query: 86 AASKLGISASDVICLDYDEFADGDTWNRNALC----QIVMRHVEVLAADTVISFDSHGVS 141
S LG+ + + L DG L V + TV+
Sbjct: 75 GLSVLGVPPARTVAL---GLPDGAL--GEHLTAAARAQVRQAFAQARPGTVLL--PWERD 127
Query: 142 GHHNHARY 149
H +H
Sbjct: 128 PHPDHRAA 135
CPU time: 56.11 user secs. 2.23 sys. secs 58.34 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.316 0.184 0.555
Gapped
Lambda K H
0.270 0.0646 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118910166
Number of Sequences: 887402
Number of extensions: 6375897
Number of successful extensions: 34173
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 33935
Number of HSP's gapped (non-prelim): 122
length of query: 151
length of database: 277,845,442
effective HSP length: 51
effective length of query: 100
effective length of database: 232,587,940
effective search space: 23258794000
effective search space used: 23258794000
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.7 bits)
S2: 70 (31.2 bits)
