Sequences with E-value BETTER than threshold (0.002) 380 e-104
216 3e-55
214 1e-54
206 4e-52
206 5e-52
205 7e-52
204 1e-51
199 4e-50
197 3e-49
197 3e-49
187 2e-46
187 2e-46
181 1e-44
178 9e-44
176 6e-43
172 5e-42
170 3e-41
170 3e-41
168 1e-40
165 6e-40
163 4e-39
162 7e-39
159 6e-38
154 2e-36
151 1e-35
151 1e-35
149 6e-35
144 2e-33
142 6e-33
142 7e-33
141 2e-32
140 4e-32
139 4e-32
137 3e-31
132 1e-29
127 2e-28
126 5e-28
125 9e-28
121 1e-26
117 2e-25
117 2e-25
117 2e-25
114 2e-24
114 2e-24
113 5e-24
111 2e-23
110 2e-23
109 8e-23
103 3e-21
100 3e-20
Alignments
>ref|NP_014008.1| (NC_001145) N-acetylglucosaminylphosphatidylinositol
de-N-acetylase; Gpi12p [Saccharomyces cerevisiae]
sp|P23797|GP12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
pir||S54588 probable membrane protein YMR281w - yeast (Saccharomyces
cerevisiae)
emb|CAA89779.1| (Z49704) unknown [Saccharomyces cerevisiae]
dbj|BAA74776.1| (AB017166) GPI12 [Saccharomyces cerevisiae]
Length = 304
Score = 380 bits (968), Expect = e-104
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MKMLRRTKVNFSKLLYKITKLAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLV 60
MKMLRRTKVNFSKLLYKITKLAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLV
Sbjct: 1 MKMLRRTKVNFSKLLYKITKLAIVLTILYIYFTPKIVSRNNASLQHIFPHKYGDYEINLV 60
Query: 61 IAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHNE 120
IAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHNE
Sbjct: 61 IAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHNE 120
Query: 121 RAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCY 180
RAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCY
Sbjct: 121 RAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCY 180
Query: 181 AAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRR 240
AAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRR
Sbjct: 181 AAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRR 240
Query: 241 IIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVNEFD 300
IIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVNEFD
Sbjct: 241 IIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVNEFD 300
Query: 301 VYTY 304
VYTY
Sbjct: 301 VYTY 304
>ref|NP_215598.1| (NC_000962) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335555.1| (NC_002755) lmbE protein [Mycobacterium tuberculosis CDC1551]
pir||H70894 hypothetical protein Rv1082 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17198.1| (AL021897) hypothetical protein Rv1082 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45369.1| (AE006992) lmbE protein [Mycobacterium tuberculosis CDC1551]
Length = 288
Score = 216 bits (547), Expect = 3e-55
Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 33/263 (12%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN-----------AEGLG 102
+ + V AHPDDE + +++ R + + +G +
Sbjct: 3 ELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGRIA 62
Query: 103 ETRVRELNESAALLLHNERAVSVQVMDFQDG------MDEIWDIDSITSSLSQKIDIKNH 156
E R E+ ++A +L + G D+ + + S + +
Sbjct: 63 EIRRDEMTKAAEILGVEHTWLGFVDSGLPKGDLPPPLPDDCFARVPLEVSTEALVRVVRE 122
Query: 157 NLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYA-QPKTKRNEQPPHVTALYLRSYKNN 215
++ T+D G H +H C+ + + +P V+ L Y +
Sbjct: 123 FRPHVMTTYDENGGYPHPDHIRCHQVSVAAYEAAGDFCRFPDAGEPWTVSKL---YYVHG 179
Query: 216 IVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNA 275
+ + + + + PF + + P+ +++ ++Y L A
Sbjct: 180 FLRERMQMLQD-EFARHGQRGPFEQWLAYWDPDHDFLTSRVTTRVECSKYFSQRDDALRA 238
Query: 276 HESQVV-----------WFRYGW 287
H +Q+ W W
Sbjct: 239 HATQIDPNAEFFAAPLAWQERLW 261
>sp|Q9HDW9|PIGL_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
emb|CAC21467.1| (AL512549) putative N-acetylglucosaminyl phosphatidylinositol
deacetylase [Schizosaccharomyces pombe]
Length = 248
Score = 214 bits (542), Expect = 1e-54
Identities = 77/244 (31%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALL 116
I V AHPDDE MFF P I L + +++CLS GNA+GLG R +EL +A+
Sbjct: 34 ILFVFAHPDDESMFFGPTIDYLGNQHS--TRVHVLCLSNGNADGLGSVREKELVVAASKY 91
Query: 117 LHNERAVSVQ-VMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHIN 175
++ V V QDGM WD + +SQ I+ N + ++TFD+ G+S H N
Sbjct: 92 QIDKTNVHVVSDPQLQDGMQAKWDPTDVAKHISQIIERYNI---KTLITFDNKGISGHPN 148
Query: 176 HKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLI 235
H +CY K+V + P V L S NI KY S++
Sbjct: 149 HIACYEGAMKIV-----------KATPQVQVFVLESV--NIFRKYISYLD---------- 185
Query: 236 SPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVF 295
I L + A D + + M+ H+SQ+VWFRYGW S+++
Sbjct: 186 -----TIPTLVQSQAGRNDTIIIHADRKSTQRIRDAMVRGHKSQMVWFRYGWIYLSKYMS 240
Query: 296 VNEF 299
N
Sbjct: 241 NNVL 244
>gb|AAF55732.1| (AE003728) CG4433 gene product [Drosophila melanogaster]
Length = 390
Score = 206 bits (520), Expect = 4e-52
Identities = 67/266 (25%), Positives = 98/266 (36%), Gaps = 55/266 (20%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN------------------ 97
+ L+ AHPDDE MFF P+I L + I+CLS G
Sbjct: 141 RVLLITAHPDDECMFFGPLIYSLTQR--QGCQVYILCLSNGETTSSDIIPKPPIDLEALN 198
Query: 98 ---AEGLGETRVRELNESAALLLHN-ERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDI 153
E + R +EL S + L V + + D W D++ S + I+
Sbjct: 199 ESNFEHKAKVRRQELWRSCSKLGIPESNIVLMNATNLPDDPYVDWRPDAVASLILHTIES 258
Query: 154 KNHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYK 213
+ Q I TFD GVS+H NH + Y A L PK + L
Sbjct: 259 LDI---QAIFTFDRDGVSSHPNHCAVYYAAASLCLANLLPKGEEAY----CKFYTL--DS 309
Query: 214 NNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATML 273
N+V KY S + T ++N ++ A M
Sbjct: 310 INVVRKYLSILDL--------------------LCTCFMSTHWCILNWKEAAIVRSAMM- 348
Query: 274 NAHESQVVWFRYGWWIFSRFVFVNEF 299
H+SQ+ WFR+ + FSR++F+N
Sbjct: 349 -EHQSQMRWFRWLYIYFSRYMFINSM 373
>ref|NP_127219.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||C75001 hypothetical protein PAB1341 - Pyrococcus abyssi (strain Orsay)
emb|CAB50449.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 267
Score = 206 bits (519), Expect = 5e-52
Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 23/222 (10%)
Query: 49 PHKYGDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAE--------- 99
P K + + + HPDD V+ I +L + C++ G
Sbjct: 27 PFKDVEK-VLCIEPHPDDCVIGMGGTIKKLTERGIEVI---YACMTDGYMGTLDSSLTGH 82
Query: 100 GLGETRVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
L R RE ES+ LL ++ + D + + I
Sbjct: 83 ELATIRRREEEESSKLLGV-KKIYWLNYRDTE-LPYSREVRKD-------LVRIIRKEKP 133
Query: 160 QIIVTFDSY-GVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVL 218
+ D + H +H++ V P + + +
Sbjct: 134 DGVFLPDPWLPYEAHPDHRNTGFLALDAVAFSPLPNFSNVDVEIGLGPHQVSFIALYYTN 193
Query: 219 KYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMN 260
K N F+ + L + Q + L +
Sbjct: 194 KPNYFVDITDVMELKLKAIRTHKSQFPDDVWEVWEPFLRTVA 235
>sp|O35790|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA20869.1| (D88364) PIG-L [Rattus norvegicus]
Length = 252
Score = 205 bits (518), Expect = 7e-52
Identities = 71/247 (28%), Positives = 115/247 (45%), Gaps = 38/247 (15%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAAL 115
+VIAHPDDE MFF+P I L + +++C S GN GE R +EL +S A+
Sbjct: 42 RALVVIAHPDDEAMFFAPTILGLARLKQQ---VSLLCFSSGNYYNQGEIRKKELLQSCAV 98
Query: 116 LLH-NERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHI 174
L R + + +F D + WD + + S++ Q + N ++VTFD+ GVS H
Sbjct: 99 LGIPPSRVMIIDKREFPDDPEVQWDTEHVASTILQH---IHANATDLVVTFDAEGVSGHS 155
Query: 175 NHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDL 234
NH + Y AV+ L P + L L+S N++ KY + + + L
Sbjct: 156 NHIALYKAVRALHSGGKLP--------EGCSVLTLQSV--NVLRKYVFLLD----LPWTL 201
Query: 235 ISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFV 294
+SP + ++ L V ++ H SQ++WFR+ + +FSR++
Sbjct: 202 LSP-QGVLFVLTSKE----------------VAQAKKAMSCHRSQLLWFRHLYTVFSRYM 244
Query: 295 FVNEFDV 301
VN +
Sbjct: 245 SVNSLQL 251
>ref|NP_004269.1| (NM_004278) phosphatidylinositol glycan, class L [Homo sapiens]
sp|Q9Y2B2|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(Phosphatidylinositol-glycan biosynthesis, class L
protein) (PIG-L)
dbj|BAA74775.1| (AB017165) PIG-L [Homo sapiens]
Length = 252
Score = 204 bits (516), Expect = 1e-51
Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 38/248 (15%)
Query: 53 GDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNES 112
+ LVIAHPDDE MFF+P + L ++C S GN GETR +EL +S
Sbjct: 39 AESRTLLVIAHPDDEAMFFAPTVLGLARLRH---WVYLLCFSAGNYYNQGETRKKELLQS 95
Query: 113 AALLLHN-ERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVS 171
+L + + DF D WD + + L Q I++ N ++VTFD+ GVS
Sbjct: 96 CDVLGIPLSSVMIIDNRDFPDDPGMQWDTEHVARVLLQHIEVNGIN---LVVTFDAGGVS 152
Query: 172 NHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKIL 231
H NH + YAAV+ L + PK + L L+S N++ KY S + L +L
Sbjct: 153 GHSNHIALYAAVRALHSEGKLPK--------GCSVLTLQSV--NVLRKYISLLDLPLSLL 202
Query: 232 YDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFS 291
+ D L ++N+ V ++ H SQ++WFR + IFS
Sbjct: 203 HTQ-------------------DVLFVLNSKE--VAQAKKAMSCHRSQLLWFRRLYIIFS 241
Query: 292 RFVFVNEF 299
R++ +N
Sbjct: 242 RYMRINSL 249
>ref|NP_142471.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71162 hypothetical protein PH0499 - Pyrococcus horikoshii
dbj|BAA29587.1| (AP000002) 272aa long hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 199 bits (503), Expect = 4e-50
Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 22/222 (9%)
Query: 49 PHKYGDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAE--------- 99
P K ++ + HPDD V+ I +L+ + C++ G
Sbjct: 31 PFKDA-KKVLCIEPHPDDCVIGMGGTIKKLSDMGVEVIYV---CMTDGYMGTTDESLSGH 86
Query: 100 GLGETRVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
L R +E ESA LL ++ + D + +T + +K
Sbjct: 87 ELAAIRRKEEEESARLLGV-KKIYWLNYRDTE-LPYSREVRKDLTK-ILRKEQPDGVFAP 143
Query: 160 QIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALY-LRSYKNNIVL 218
+ ++S H +H+ + V P + +
Sbjct: 144 DPWLPYES-----HPDHRRTGFLAIESVAFSQLPNFSNTDLDIGLNPYNSGSFIALYYTH 198
Query: 219 KYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMN 260
K N + + L + Q + L +
Sbjct: 199 KPNYIVDITDLMELKLKAIRVHRSQFPDDIWEKWEPFLRTIA 240
>emb|CAC18708.2| (AL451182) conserved hypothetical protein [Streptomyces coelicolor]
Length = 293
Score = 197 bits (496), Expect = 3e-49
Identities = 41/253 (16%), Positives = 84/253 (32%), Gaps = 24/253 (9%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA------------EGL 101
+ V AHPDDE + +++ S + +G+ E +
Sbjct: 4 QLRLMAVHAHPDDESSKGAATMAKYVSEGVDVLVVTCTGGERGSILNPKLQGDAYIEENI 63
Query: 102 GETRVRELNESAALLLHNERAVSVQVMDFQDG------MDEIWDIDSITSSLSQKIDIKN 155
E R +E++E+ +L + + +G + + ++ + + + +
Sbjct: 64 HEVRRKEMDEAREILGVGQEWLGFVDSGLPEGDPLPPLPEGCFALEDVDKAAGELVRKIR 123
Query: 156 HNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNN 215
Q+I T+D G H +H + + A K E L+ Y N
Sbjct: 124 SFRPQVITTYDENGGYPHPDHIMTHKITMVAFEGAAD-TEKYPESEYGTAYQPLKVYYNQ 182
Query: 216 IVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNA 275
+ + + L SP+ ++ ++ L+ A + L A
Sbjct: 183 GFNRPRTEALHHALLDRGLESPYEDWLKRW-SEFERKERTLTTHVPCADFFEIRDKALIA 241
Query: 276 HESQVV----WFR 284
H +Q+ WFR
Sbjct: 242 HATQIDPEGGWFR 254
>gb|AAL80478.1| (AE010159) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 267
Score = 197 bits (496), Expect = 3e-49
Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 21/220 (9%)
Query: 49 PHKYGDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAE--------- 99
P + ++ + HPDD + I +L+ + IC++ G
Sbjct: 27 PFEDA-KKVICIEPHPDDCAIGMGGTIKKLSDEGVEVI---YICMTDGYMGTTDEKLSGH 82
Query: 100 GLGETRVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
L R RE ESA LL + + D + + + +K
Sbjct: 83 ELALIRRREEEESAKLLGV-RKIYWLNYRDTE-LPYSREVRKDLVKII-RKEKPDGVFAP 139
Query: 160 QIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLK 219
+ ++S H +H+ + V P + + + K
Sbjct: 140 DPWLPYES-----HPDHRRTGFLAIESVAFSQLPNFSNIDIDIGLKPHSVSFIALYYTHK 194
Query: 220 YNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLM 259
N + + L + Q + L +
Sbjct: 195 PNYIVDITDLMELKLKAIRAHRSQFTDDIWETWEPFLRTV 234
>ref|NP_302547.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
gb|AAA63037.1| (U15183) lmbE gene product [Mycobacterium leprae]
emb|CAC31907.1| (AL583925) conserved hypothetical protein [Mycobacterium leprae]
Length = 290
Score = 187 bits (471), Expect = 2e-46
Identities = 36/265 (13%), Positives = 82/265 (30%), Gaps = 37/265 (13%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN-----------AEGLG 102
+ + V AHPDDE + +++ R + + +G +
Sbjct: 3 ELRLMAVHAHPDDESSKGAATLARYADEGHRVLVVTLTGGERGEILNPAMDLPDVHGHIA 62
Query: 103 ETRVRELNESAALLLHNERAVSVQVMDF--------QDGMDEIWDIDSITSSLSQKIDIK 154
E R E+ ++A +L + +D D+ + + + + +
Sbjct: 63 EIRRDEMAKAAEILGVEHT--WLGFIDSGLPKGDPPPPLPDDCFALVPLEVCTEALVRVV 120
Query: 155 NHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDY-AQPKTKRNEQPPHVTALYLRSYK 213
++ T+D G H +H C+ + + +P V+ L Y
Sbjct: 121 RKFRPHVLTTYDENGGYPHPDHIRCHQVSVDAYEAACDYRRFPDAGKPWTVSKL---YYN 177
Query: 214 NNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATML 273
+ + + + + PF + + P + +++ + Y L
Sbjct: 178 HGFLRARMQLLHD-EFAKHGQAGPFDKWLAQSNPAHDPFESRVTTRVECSAYFSQRDDAL 236
Query: 274 NAHESQVV-----------WFRYGW 287
AH +Q+ W + W
Sbjct: 237 RAHATQIDPKAEFFAAPISWQQRLW 261
>ref|NP_302050.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30445.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 308
Score = 187 bits (471), Expect = 2e-46
Identities = 42/258 (16%), Positives = 74/258 (28%), Gaps = 42/258 (16%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN-------------AEGLG 102
+ V AHPDDE + I+ S + +G A+ LG
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVQVVTCTLGEEGEVIGDRWAELTVDHADQLG 65
Query: 103 ETRVRELNESAALLLHNERAVSV--------QVMDFQDGMDEIWDIDSITSSLSQKIDIK 154
R+ EL E+ L + + + + ++ + I
Sbjct: 66 GYRIFELTEALRALGVSAPIYLGGAGRWRDSGMRGTAPRRRQRFIDADENEAVGALVAII 125
Query: 155 NHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDY------AQPKTKRNEQPPHVTALY 208
++VT+D +G H +H + V + +P V Y
Sbjct: 126 RELRPHVVVTYDPHGGYGHPDHVHTHFITAAAVASSGVAAGLEVGADEYPGKPWKVPKFY 185
Query: 209 LRSYKNNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAE-----KDKLSLMNTHA 263
+ + + L R +PP KD +++ +
Sbjct: 186 WSVFALSAF----------EAGMNALQGKDLRPEWTIPPREEFYFGYSDKDIDAVVEATS 235
Query: 264 QYVLAFATMLNAHESQVV 281
A L AH +QVV
Sbjct: 236 DVWAAKTAALTAHATQVV 253
>ref|NP_390128.1| (NC_000964) alternate gene name: jojG~similar to hypothetical
proteins [Bacillus subtilis]
sp|P42981|YPJG_BACSU Hypothetical 24.8 kDa protein in DAPB-PAPS intergenic region
pir||F69937 conserved hypothetical protein ypjG - Bacillus subtilis
gb|AAA92876.1| (L38424) unknown [Bacillus subtilis]
gb|AAB38444.1| (L47709) putative [Bacillus subtilis]
emb|CAB14163.1| (Z99115) alternate gene name: jojG~similar to hypothetical proteins
[Bacillus subtilis]
Length = 224
Score = 181 bits (456), Expect = 1e-44
Identities = 32/201 (15%), Positives = 63/201 (30%), Gaps = 16/201 (7%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGET--RVRELNESA 113
++ AH DD + I++ + I L++ G R E E+A
Sbjct: 5 DVLAFGAHSDDVEIGMGGTIAKFVKQEKK---VMICDLTEAELSSNGTVSLRKEEAAEAA 61
Query: 114 ALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNH 173
+L ++R + D + D ++ + + + + F Y H
Sbjct: 62 RILGADKRIQ----LTLPDRGLIMSD-----QAIRSIVTVIRICRPKAV--FMPYKKDRH 110
Query: 174 INHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYD 233
+H + A V++ + K K + P + Y N + + I I
Sbjct: 111 PDHGNAAALVEEAIFSAGIHKYKDEKSLPAHKVSKVYYYMINGFHQPDFVIDISDTIEAK 170
Query: 234 LISPFRRIIQALPPNTAAEKD 254
S Q +P +
Sbjct: 171 KQSLNAYKSQFIPSKDSVSTP 191
>ref|NP_376770.1| (NC_003106) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65879.1| (AP000984) 221aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 221
Score = 178 bits (449), Expect = 9e-44
Identities = 31/227 (13%), Positives = 57/227 (24%), Gaps = 18/227 (7%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA------EGLGETRVREL 109
I + HPDDE +++L + S G+ E L E R +E
Sbjct: 2 RILFISPHPDDECDNAGGTLAKLAKS-HEIYIVYMTDGSAGSPNPEERGEKLAEIRRKEA 60
Query: 110 NESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYG 169
E +L + +++ D I + + I II+
Sbjct: 61 LEGLKVLGIKKDNAF--FLNYPDTKLRF----HIREASERVAKILREIKPNIIIY--PSL 112
Query: 170 VSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKY---NSFIWE 226
+ H +H S + + + + +L +
Sbjct: 113 LDGHNDHWSGGYITRIAIRKVGITVNELSYLNWLPIPSKSVFDAIKYLLIPFHRKIKVDI 172
Query: 227 ILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATML 273
L + + Q + K L ML
Sbjct: 173 REYKRIKLEAMKKHESQFKYLDADYIKKFLDSDYETFYVERIVNDML 219
>ref|NP_565647.1| (NM_128293) similar to PIG-L [Arabidopsis thaliana]
Length = 223
Score = 176 bits (442), Expect = 6e-43
Identities = 63/235 (26%), Positives = 90/235 (37%), Gaps = 55/235 (23%)
Query: 66 DEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHNERAVSV 125
D+ FFSP I+ S +I+C S GNA+G+G R +EL+ + A+L
Sbjct: 34 DDGKFFSPTINYFTS---TACNLHILCFSTGNADGMGSIRDQELHRACAVLKV------- 83
Query: 126 QVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCYAAVKK 185
+ I D DS H + I+TFD+YGV H NH+ + +
Sbjct: 84 ----IPFDKEGICDNDSC------------HCNEEHIITFDNYGVWGHCNHRDVHPPIDC 127
Query: 186 LVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRRIIQAL 245
+D LY+ NI KY + L IL P + II
Sbjct: 128 KIDSAK----------RIHGFLYVHQVSLNIFRKYCGPVDIWLSILSAKRHPSKVII--- 174
Query: 246 PPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQVVWFRYGWWIFSRFVFVNEFD 300
+ Q +F M H SQ VWFR + +FS + +VN D
Sbjct: 175 ---------------INKQPWKSFKAMAQ-HLSQWVWFRKLFVLFSSYTYVNTLD 213
>ref|NP_242548.1| (NC_002570) BH1682~unknown conserved protein [Bacillus halodurans]
dbj|BAB05401.1| (AP001512) BH1682~unknown conserved protein [Bacillus halodurans]
Length = 231
Score = 172 bits (434), Expect = 5e-42
Identities = 35/202 (17%), Positives = 61/202 (29%), Gaps = 17/202 (8%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGET--RVRELNES 112
+I AHPDD + + R I L+K G R +E ++
Sbjct: 4 LDILAFGAHPDDVEIGMGATLYHYRQKGHR---VGICNLTKAELSSNGTVEQRQKEAADA 60
Query: 113 AALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSN 172
+ +L +ER +D D + + + + H + F Y V
Sbjct: 61 SRILGIDERIQ----LDLPDRGL----RNPSEQQVRNIVSVIRHCQPTFV--FVPYPVDR 110
Query: 173 HINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILY 232
H +H C VK+ V + K HV L+ Y N + + +
Sbjct: 111 HPDHGHCAELVKEAVFNARIRNYKAEGGAHHVQDLF--YYMINSFERPDLLVDVSHCYEV 168
Query: 233 DLISPFRRIIQALPPNTAAEKD 254
+ Q + +
Sbjct: 169 KQAALNAYKSQFTKSKASVDTP 190
>ref|NP_437291.1| (NC_003078) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
emb|CAC49151.1| (AL603644) conserved hypothetical protein, possibly
membrane-associated [Sinorhizobium meliloti]
Length = 228
Score = 170 bits (428), Expect = 3e-41
Identities = 30/220 (13%), Positives = 60/220 (26%), Gaps = 14/220 (6%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVR-ELNESAA 114
+V HPDDEV+ I++L + + + R++ E ++
Sbjct: 10 RTLVVAPHPDDEVLGAGGTIARLAAEGEEVFVAVVTEGKPPAFDPEATARIQAEARQAHR 69
Query: 115 LLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHI 174
L E + ++ ++L + + + Q ++ + H+
Sbjct: 70 ALGVTETI----WLRLPAAQLAETAHATVNAALLELV---HRLSPQTVLL--PFVGDMHM 120
Query: 175 NH--KSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILY 232
+H A V PK + T V N F+ +
Sbjct: 121 DHQLTFTSALVACRPHQAEFPKLVLAYETLSETNWNAPYLSPAFV--PNVFVDISEHLEA 178
Query: 233 DLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATM 272
L + Q P L + T +
Sbjct: 179 KLKAMELFASQVRQPPHERSIPTLRALATLRGATVMRQAA 218
>ref|NP_244186.1| (NC_002570) BH3320~unknown conserved protein [Bacillus halodurans]
dbj|BAB07039.1| (AP001518) BH3320~unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 170 bits (428), Expect = 3e-41
Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 29/203 (14%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA------------EGL 101
+ + ++ HPDDE S I+ VP CL+ G E L
Sbjct: 4 ERHVLVIFPHPDDEAFGVSGTIALFRKQG---VPVTYACLTLGEMGRNLGNPPFATRESL 60
Query: 102 GETRVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQI 161
+ R +EL +SA + + ++++ ++D E D +T +S D+ +
Sbjct: 61 PDIRKKELIKSAEAMGIED----LRMLGYRDKTIEFEDETKLTDMVS---DLMAELNPSL 113
Query: 162 IVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYN 221
I+TF G S H +H++ AV + V K+ R + V + +
Sbjct: 114 IITF-YPGYSVHPDHEATGRAVVRAV--RRLEKSMRPKL-YGVAFSNGHQE---ELGDPD 166
Query: 222 SFIWEILKILYDLISPFRRIIQA 244
+ I Q
Sbjct: 167 ILFDISPVAEQKKAAIRAHISQT 189
>ref|NP_294173.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||F75517 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10027.1|AE001904_3 (AE001904) conserved hypothetical protein [Deinococcus radiodurans]
Length = 281
Score = 168 bits (422), Expect = 1e-40
Identities = 43/243 (17%), Positives = 69/243 (27%), Gaps = 47/243 (19%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA----------EGLGETRV 106
+ ++ AHPDDE ++ R V C ++G A + LG R
Sbjct: 13 LLVIFAHPDDEAFSVGGTLTHYARQGVRVVL---ACATRGEAGKITVPGMTVDDLGAQRE 69
Query: 107 RELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLS--------QKIDIKNHNL 158
+EL E+ L + D G E D T+ ++ + +
Sbjct: 70 QELREACRALEIEPPV-FLDYHDS--GRYERTRHDDPTALMNVNPLDAEVKLRALIEDVQ 126
Query: 159 NQIIVTFDSYGVSNHINHKSCYAAVKKL-VDDYAQPKTKRNEQPPHVTALYLRSYKNNIV 217
Q+IVTFD +G H++H + A P
Sbjct: 127 PQVIVTFDPHGAYGHVDHLQMHRATVAAFFSTGHLPSGGPQRLYYT-------------- 172
Query: 218 LKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHE 277
+ IS P L++ Y L AH
Sbjct: 173 --------AMTHQAAAQISRLGHDQSLDPLVYGVSDSTLAVTMDVGAYAENKKAALAAHG 224
Query: 278 SQV 280
+Q+
Sbjct: 225 TQM 227
>emb|CAC16965.1| (AL450350) conserved hypothetical protein [Streptomyces coelicolor]
Length = 277
Score = 165 bits (416), Expect = 6e-40
Identities = 37/248 (14%), Positives = 65/248 (25%), Gaps = 43/248 (17%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSK---------GNAEGL---- 101
+ V AHPDDE ++++ + RTV G+
Sbjct: 6 LTLMAVHAHPDDEATSTGGVLARYAAEGIRTVLVTCTDGGCGDGPGGVKPGDPGHDPAAV 65
Query: 102 GETRVRELNESAALLLHNERAVSVQVMD-------FQDGMDEIWDIDSITSSLSQKIDIK 154
R REL ES +L ++ D D W + ++ ++
Sbjct: 66 ALMRRRELEESRDILKI-SDLETLDYADSGMMGWPSNDAPGSFW-RTPVEEGAARLAELM 123
Query: 155 NHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKN 214
H ++VT+D G H +H + ++ + +
Sbjct: 124 RHYRPDVVVTYDENGFYGHPDHIQAHRITMAALEMTTL----TPKVYWTTAPRSMMQRFG 179
Query: 215 NIVLK--YNSF-IWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFAT 271
I+ + + I I T+
Sbjct: 180 EIMREFHPDMPEPDPAEAAAMAEIGLPDEEITTWVDTTSFS--------------GQKFD 225
Query: 272 MLNAHESQ 279
L AH SQ
Sbjct: 226 ALAAHASQ 233
>emb|CAB67717.1| (AJ271405) hypothetical protein [Streptomyces rochei]
Length = 234
Score = 163 bits (410), Expect = 4e-39
Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 21/221 (9%)
Query: 53 GDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNE- 111
G ++ +V HPDD+V+ +++ R +I + + E
Sbjct: 3 GVTDVLVVAPHPDDDVIGCGGSMAKHVREGARVTVVVVIGRERSALDD--AVTEAEFAAE 60
Query: 112 ---SAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSY 168
+A +L + V+ + D + + Q++ + +
Sbjct: 61 TENAAKILGVHR---CVRFDESSR------DFAPSRRIHLDLVRVLREVRPQVV--YLPH 109
Query: 169 GVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQ-PPHVTALYLRSYKNNIVLKYNSFIWEI 227
+ + H+ + + + + + P L L + + +Y
Sbjct: 110 DNDDDVEHRMVHRLTTEALWMAQSEFFQEAGECPMPAPRLVLGYEVWSPMARYQYAEDIG 169
Query: 228 LKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLA 268
I + + + Q AA + + + + V A
Sbjct: 170 EHIHTKVEAMRAYVSQLR---HAAWDEGIRGLARYRGAVSA 207
>ref|NP_371091.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373778.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41756.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56729.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 221
Score = 162 bits (407), Expect = 7e-39
Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 29/205 (14%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA------------EGL 101
+ + ++ HPDDE + ++ +P CL+ G E L
Sbjct: 4 ERHVLVIFPHPDDETFSSAGTLASYIQKG---IPVTYACLTLGQMGRNLGNPPFATRESL 60
Query: 102 GETRVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQI 161
R REL E+ ++ + ++ M +D E + I + ID +
Sbjct: 61 PSIRERELEEACKVIGITD----LRKMGLRDKTVEFEPYEHIDGMIKSLIDDT---NPSL 113
Query: 162 IVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYN 221
I++F G + H +H++ AV + V+ PK +R V + + +
Sbjct: 114 IISF-YPGYAVHPDHEATADAVIRTVE--RMPKEERPRLTL-VAFSN---DATEALGEPD 166
Query: 222 SFIWEILKILYDLISPFRRIIQALP 246
+ + Q P
Sbjct: 167 IQNDITDFKELKIKAFEAHASQTGP 191
>pir||S44952 lmbE protein - Streptomyces lincolnensis
pir||S69814 lmbE protein - Streptomyces lincolnensis
emb|CAA55751.1| (X79146) lmbE [Streptomyces lincolnensis]
Length = 270
Score = 159 bits (399), Expect = 6e-38
Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 37/247 (14%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLG-----------ETR 105
+ V AHPDDE ++ + R V G R
Sbjct: 5 LLTVHAHPDDEASRGGATVAHYTAQGVRAVLVTCTDGGAGEVLNPAVTDDFTPERFVAVR 64
Query: 106 VRELNESAALLLHNERAVSVQVMDFQD----GMDEIWDIDSITSSLSQKIDIKNHNLNQI 161
EL+ SA L ++ + D G E + + + ++ + +
Sbjct: 65 SAELDASARNLGYSA-VHRLGYRDSGMDGTAGGAEAFVRAPLDEAATRLARVIADERPDV 123
Query: 162 IVTF-DSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKY 220
++ + ++ H +H + + VD H+ R + + +
Sbjct: 124 VIGYGTNHTRDPHPDHIRANEVLTRRVDL-----LDHTPAVYHIAFSRRR---HRALHQA 175
Query: 221 NSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFATMLNAHESQV 280
+ SP+ + A P E + T V L +H +QV
Sbjct: 176 CV--------DSGVPSPYEGGLSAPPGAFDDEWITTLVDVTKGDAVERRLDALRSHVTQV 227
Query: 281 ----VWF 283
WF
Sbjct: 228 PPASGWF 234
>emb|CAA77139.1| (Y18353) hypothetical protein [Thermus thermophilus]
Length = 227
Score = 154 bits (386), Expect = 2e-36
Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 20/192 (10%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLG--ETRVRELNES 112
++ +V HPDD + +++ + + I+ L++G G E R +E+ E+
Sbjct: 2 LDLLVVAPHPDDGELGCGGTLARAKAEG---LSTGILDLTRGEMGSKGTPEEREKEVAEA 58
Query: 113 AALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSN 172
+ +L + R + F DG + + +++ F
Sbjct: 59 SRILGLDFR----GNLGFPDGGLA-----DVPEQRLKLAQALRRLRPRVV--FAPLEADR 107
Query: 173 HINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYL----RSYKNNIVLKYNSFIWEIL 228
H +H + V K +P V L+ + + ++K ++FI +
Sbjct: 108 HPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVKISAFIDQWE 167
Query: 229 KILYDLISPFRR 240
+ S F
Sbjct: 168 AAVLAYRSQFTG 179
>emb|CAC05756.1| (AL391751) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 295
Score = 151 bits (380), Expect = 1e-35
Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 20/175 (11%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN----------AEGLGET 104
+ LV AHPDDE + +++ + +G LG
Sbjct: 7 RRLLLVHAHPDDESINNGVTMARYAAEGAHVTLVTCTLGERGEVIPPALAHLSGAALGGH 66
Query: 105 RVRELNESAALLLHNERAVSVQVMDFQD-GMDEIWDIDSI--------TSSLSQKIDIKN 155
R EL ++ L ++ + + D GM + D D ++ + +D+
Sbjct: 67 RRGELADAMRALGVDDFRLLGGPGRYADSGMLGLSDNDDPGCLWQADVDAAAALLVDVIR 126
Query: 156 HNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPP-HVTALYL 209
Q++VT+D G H +H + + + A+ + V +
Sbjct: 127 EVRPQVLVTYDPNGGYGHPDHIQAHRIAMRAAELAAEAGCPVAKVYWNRVPRSRV 181
>ref|NP_293807.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75562 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09674.1|AE001871_6 (AE001871) conserved hypothetical protein [Deinococcus radiodurans]
Length = 237
Score = 151 bits (379), Expect = 1e-35
Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 18/200 (9%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN-------AEGLGETRVR 107
++ L++ HPDDEV S + + + + G E L R
Sbjct: 13 LKLLLIVPHPDDEVYGASGTLMEYLAAGESCGLVTLTRGEAGRTLGLCDGPEELARMRAV 72
Query: 108 ELNESAALLLHNERAVSVQV-MDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFD 166
EL ++ S+ F D + + + + + + + ++TF
Sbjct: 73 ELAACLEVIGLTTTPGSLHEQHQFPDKYLKDYPFEELVETAR---EAMERLRPETVLTFP 129
Query: 167 SYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPP---HVTALYLRSYKNNIVLKYNSF 223
G + H +H + + AVK D P R L
Sbjct: 130 PNGSNGHPDHMTTHRAVKAAWD--RLPAGSRPVLWYYASETPPEN--EELRAAWLPPTVK 185
Query: 224 IWEILKILYDLISPFRRIIQ 243
+ L + Q
Sbjct: 186 RDVSALVTRKLQAIACHRSQ 205
>ref|NP_215686.1| (NC_000962) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335650.1| (NC_002755) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
pir||B70875 hypothetical protein Rv1170 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15847.1| (AL010186) hypothetical protein Rv1170 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45464.1| (AE006998) lmbE-related protein [Mycobacterium tuberculosis
CDC1551]
Length = 303
Score = 149 bits (373), Expect = 6e-35
Identities = 29/185 (15%), Positives = 50/185 (26%), Gaps = 23/185 (12%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGN-------------AEGLG 102
+ V AHPDDE + I+ S + +G A+ LG
Sbjct: 6 RLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLG 65
Query: 103 ETRVRELNESAALLLHNERAVS---VQVMDFQDGM-----DEIWDIDSITSSLSQKIDIK 154
R+ EL + L + + D + ++ + I
Sbjct: 66 GYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAII 125
Query: 155 NHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDDYAQPKT--KRNEQPPHVTALYLRSY 212
++VT+D G H +H + V P V Y
Sbjct: 126 RELRPHVVVTYDPNGGYGHPDHVHTHTVTTAAVAAAGVGSGTADHPGDPWTVPKFYWTVL 185
Query: 213 KNNIV 217
+ +
Sbjct: 186 GLSAL 190
>ref|NP_344220.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK43010.1| (AE006882) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 193
Score = 144 bits (361), Expect = 2e-33
Identities = 33/196 (16%), Positives = 60/196 (29%), Gaps = 37/196 (18%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAE-------GLGETRVR 107
+ +V HPDDE + I + + G+ + L E R +
Sbjct: 8 RRVLIVAPHPDDETLCCGGTIQIFKEKGYKISVIIVTDGRYGSPDDKLKGSSELIEIRRQ 67
Query: 108 ELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDS 167
E + +L +E V+ ++F+D D ++ + N ++ F
Sbjct: 68 EALRATKILGIDE----VKFLNFEDSKVSEEDAEN------ALAEFLREN--DVV--FSP 113
Query: 168 YGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEI 227
NH +H + AV+KL + T + R K
Sbjct: 114 IPFDNHPDHANIGKAVEKLYPNA------YFYLIWGNTQVNWREVK----------FDIR 157
Query: 228 LKILYDLISPFRRIIQ 243
L + + I Q
Sbjct: 158 KYKESKLRAINQYISQ 173
>emb|CAB66204.1| (AL136502) hypothetical protein SCF43.15c. [Streptomyces coelicolor
A3(2)]
Length = 247
Score = 142 bits (357), Expect = 6e-33
Identities = 26/213 (12%), Positives = 49/213 (22%), Gaps = 19/213 (8%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKG----NAEGLGETRVRELN 110
V+AHPDD + I+ G R RE
Sbjct: 17 RRALAVVAHPDDLEYGCAAAIAAWTDEGREVAYVLATRGEAGIDTLAPAECAPLREREQR 76
Query: 111 ESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTF---DS 167
SAA++ +E + D D + ++++T D+
Sbjct: 77 ASAAVVGVSE-VEFLDHRDGVVEYGTALRRD--------IAAAIRRHRPELVITMNHRDT 127
Query: 168 YGV--SNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALY-LRSYKNNIVLKYNSFI 224
+G N +H + A D + +R +
Sbjct: 128 WGGVAWNTPDHVAVGRATLDAAADAGNRWIFPELTDRGLEPWNGVRWVAVAGSSSPTHAV 187
Query: 225 WEILKILYDLISPFRRIIQALPPNTAAEKDKLS 257
+ + S + +
Sbjct: 188 DATPGMERAVRSLLEHRTYIEVLTEEDPETYVR 220
>ref|NP_296086.1| (NC_001263) Uncharacterized conserved protein [Deinococcus
radiodurans]
Length = 239
Score = 142 bits (356), Expect = 7e-33
Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 21/198 (10%)
Query: 52 YGD---YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLG--ETRV 106
YG+ + + HPDD + + +L I+ L++G G R
Sbjct: 9 YGEAQPLDWLCLAPHPDDAEIGAGGTLIRLAQAGR---AVGILELTRGEKGTQGTPAERQ 65
Query: 107 RELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFD 166
E +A L+ + R + DG +++V
Sbjct: 66 AECVAAARLMDLSWRGQ----LGLPDGELADTPP-----FAHALAAALRTVRPRVLVV-- 114
Query: 167 SYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWE 226
+ H +H Y K+ + A K P V + L Y+ N + N +
Sbjct: 115 PHWHDRHPDHFGTYHLTKRAIHLAALKKADLGGDPWRVQRVLL--YQGNSDISANVLVDI 172
Query: 227 ILKILYDLISPFRRIIQA 244
+ + Q
Sbjct: 173 GSVMTEWEAAIRAHTSQF 190
>ref|NP_389828.1| (NC_000964) Uncharacterized conserved protein [Bacillus subtilis]
Length = 221
Score = 141 bits (353), Expect = 2e-32
Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 35/204 (17%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA------------EGLGE 103
+ +++ HPDDE + +I+ + +P C + G E L
Sbjct: 4 HVLVILPHPDDESYGVAGLIAL---NRKKDIPVTYACATLGEMGRNMGDPFFANRETLPL 60
Query: 104 TRVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIV 163
R +EL + + N+ ++++ +D E D + + + + ID +IV
Sbjct: 61 LRKQELINACKEMDIND----LRMLGLRDKTLEFEDDEYLADIMEEIIDDVK---PSLIV 113
Query: 164 TFDSYGVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNN---IVLKY 220
TF G H +H +C AV + Y + K R + N ++ +
Sbjct: 114 TF-YPGHGVHPDHDACGEAVIRA--LYRKKKEDRPRTI-------CMAITRNREEVLGEA 163
Query: 221 NSFIWEILKILYDLISPFRRIIQA 244
+ + + + Q
Sbjct: 164 DVVLDIKEVADIKMNALRAHRTQT 187
>gb|AAC14880.1| (AF060080) hypothetical protein [Chlorobium tepidum]
Length = 240
Score = 140 bits (350), Expect = 4e-32
Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 21/194 (10%)
Query: 58 NLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLG--ETRVRELNESAAL 115
AHPDD + + ++ P + L+ G LG ETR +E +
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDEGK---PVAVCDLTAGEMGTLGTAETRRQEAALATER 69
Query: 116 LLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHIN 175
+ + R + + D + + SL + I I + F + H +
Sbjct: 70 MGYVAR-EQLDLGDSELFYTK--------ESLHKIIRIIRKYRPDTV--FCNPPDERHPD 118
Query: 176 HKSCYAAVKKLVDDYAQPKTKRNE----QPPHVTALYLRSYKNNIVLKYNSFIWEILKIL 231
H + + K + + Q H L + + + +
Sbjct: 119 HMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQFKQL-EPQIVVDVSSTFE 177
Query: 232 YDLISPFRRIIQAL 245
Q
Sbjct: 178 RSRAGIEAFGTQFH 191
>gb|AAG12428.1| (AY005138) unknown [Chlorobium tepidum]
Length = 250
Score = 139 bits (349), Expect = 4e-32
Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 21/194 (10%)
Query: 58 NLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLG--ETRVRELNESAAL 115
AHPDD + + ++ P + L+ G LG ETR +E +
Sbjct: 13 LAFGAHPDDVELACGATLLKIMDEGK---PVAVCDLTAGEMGTLGTAETRRQEAALATER 69
Query: 116 LLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHIN 175
+ + R + + D + + SL + I I + F + H +
Sbjct: 70 MGYVAR-EQLDLGDSELFYTK--------ESLHKIIRIIRKYRPDTV--FCNPPDERHPD 118
Query: 176 HKSCYAAVKKLVDDYAQPKTKRNE----QPPHVTALYLRSYKNNIVLKYNSFIWEILKIL 231
H + + K + + Q H L + + + +
Sbjct: 119 HMKASRLIYEACYYAGLRKIETFDGGLPQAAHRPRHLLYYIQFKQL-EPQIVVDVSSTFE 177
Query: 232 YDLISPFRRIIQAL 245
Q
Sbjct: 178 RSRAGIEAFGTQFH 191
>ref|NP_437176.1| (NC_003078) conserved hypothetical protein [Sinorhizobium meliloti]
emb|CAC49036.1| (AL603644) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 292
Score = 137 bits (343), Expect = 3e-31
Identities = 28/223 (12%), Positives = 58/223 (25%), Gaps = 33/223 (14%)
Query: 60 VIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKG-----NAEGLGETRVRELNESAA 114
HPDDE + + ++ + + + + E L R E E+
Sbjct: 53 FAPHPDDETLGCGGVSAKKLASGVEVRFVFVTDGAASHRRLISPEELRSRRESEALEAVH 112
Query: 115 LLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHI 174
L + SV + F D I + + + Q + F ++
Sbjct: 113 RLGASS--ESVTFLRFPDAEAS----HHIHAITKAIVPLLERWRPQSV--FVTHAKDPPS 164
Query: 175 NHKSCYAAVKKL--VDDYAQ-----------------PKTKRNEQPPHVTALYLRSYK-N 214
+H + AAV+ P +++
Sbjct: 165 DHIAVNAAVRAALRWHGRPLTVFEYPVWYWYHWPWVRPAGDLPGMWRTTLRQTVKTVAGL 224
Query: 215 NIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLS 257
+ N+ + + + + Q P + LS
Sbjct: 225 RALSALNTLVPIGEFLDVKRHALAAHVSQTQRPEDKDDWQTLS 267
>ref|NP_385870.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC46343.1| (AL591788) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 244
Score = 132 bits (329), Expect = 1e-29
Identities = 33/237 (13%), Positives = 60/237 (24%), Gaps = 43/237 (18%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGET--------- 104
+V AH D V I+ ++CLS G +
Sbjct: 3 QKTGLVVSAHSADFVWRAGGAIAAHARQG---YAVTVVCLSFGERGESAKLWKKSGMTLE 59
Query: 105 -----RVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
R RE +A L + + + D+ I + + +D+
Sbjct: 60 TVKADRRREAENAAKALGVH-DILFYDLGDYP--------IQVTPEAFDRLVDLYREIRP 110
Query: 160 QIIVTF---DSYGVSNHINHKSCYAAVKKLV---DDYAQPKTKRNEQPPHVTALYLRSYK 213
+ ++T D Y H + A V +P T PP + +
Sbjct: 111 EFMLTHSRQDPYNFD-HP--MATEFAQHARVIAQAHGHKPSTPVLGAPPVYLFEPHQPEQ 167
Query: 214 NNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFA 270
N K N + L + Q + + + +
Sbjct: 168 CNW--KPNFLLDITDVWEKKLAAIKCMEGQ------EHLWEYYTRVALQRGVQASRN 216
>ref|NP_492873.1| (NM_060472) Y52B11C.1.p [Caenorhabditis elegans]
pir||T27111 hypothetical protein Y52B11C.1 - Caenorhabditis elegans
emb|CAA19544.1| (AL023846) Y52B11C.1 [Caenorhabditis elegans]
Length = 151
Score = 127 bits (318), Expect = 2e-28
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESA 113
I L+IAHPDDE MFFSP I L R ++C+S GN +GLG+ R REL+ +A
Sbjct: 31 QSRILLLIAHPDDETMFFSPTIRALLQAGHRVF---VLCISNGNFDGLGKIRARELSRAA 87
Query: 114 ALLLHN-ERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSN 172
+ L + + + +F DG + W+ +++ + + +++ +++FDS+GVS
Sbjct: 88 SKLGISASDVICLDYDEFADG--DTWNRNALCQIVMRHVEVLA---ADTVISFDSHGVSG 142
Query: 173 HINHKS 178
H NH
Sbjct: 143 HHNHAR 148
>ref|NP_403747.1| (NC_003143) hypothetical protein [Yersinia pestis]
emb|CAC88949.1| (AJ414141) hypothetical protein [Yersinia pestis]
Length = 310
Score = 126 bits (315), Expect = 5e-28
Identities = 30/237 (12%), Positives = 58/237 (23%), Gaps = 44/237 (18%)
Query: 54 DYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGET--------- 104
+V AH D V I+ +I+CLS G +
Sbjct: 71 QKTALVVSAHSADFVWRAGGAIALHVEQG---YQVHIVCLSYGERGESAKLWRKGDMTEE 127
Query: 105 -----RVRELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
R E +A +L + + D+ D+ SL + D+
Sbjct: 128 RVKASRHTEAQAAANVLGAS--IEFFDMGDYPLRADK--------ESLFRLADVFRRIQP 177
Query: 160 QIIVTF---DSYGVSNHINHKSCYAAVKKLV---DDYAQPKTKRNEQPPHVTALYLRSYK 213
++T D Y H + A + + + +P PP + +
Sbjct: 178 HFVLTHSLADPYNYD-HP--LAANLAQEARIIAQAEGYRPGEAIIGAPPVYCFEPHQPEQ 234
Query: 214 NNIVLKYNSFIWEILKILYDLISPFRRIIQALPPNTAAEKDKLSLMNTHAQYVLAFA 270
K + + + Q + + +
Sbjct: 235 CGW--KPDVLLDITSVWEKKYAAIQCMAGQ------EHLWEYYTRVALQRGVQAKRN 283
>emb|CAC36570.1| (AL590463) hypothetical protein [Streptomyces coelicolor]
emb|CAC36831.1| (AL590464) hypothetical protein [Streptomyces coelicolor]
Length = 218
Score = 125 bits (313), Expect = 9e-28
Identities = 32/197 (16%), Positives = 52/197 (26%), Gaps = 26/197 (13%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLG-ETRVRELNESAAL 115
+ +V+AHPDD + I + CL+ G G E R +E + L
Sbjct: 4 VLVVVAHPDDAEIAMGMRIHWYALNGAT---VRVHCLTTGTPAPDGTEVRRQECLSAGEL 60
Query: 116 LLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHIN 175
L ++ F D + + + D+ II T Y H++
Sbjct: 61 LGVDQ-------YTFSSIPDTRFVENR-GRINADLFDVFREARPDIIYTH--YPDDQHLD 110
Query: 176 HKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLI 235
H V V P + P V F + +
Sbjct: 111 HSVTAREVT-TVARREAPNLRHFRSPYSVGFEPNEF-----------FFGTAELLEAKVR 158
Query: 236 SPFRRIIQALPPNTAAE 252
+ Q
Sbjct: 159 ALKCFASQTQLDMDVFR 175
>gb|AAC01723.1| (AF040570) negative regulatorly protein [Amycolatopsis
mediterranei]
Length = 255
Score = 121 bits (303), Expect = 1e-26
Identities = 29/231 (12%), Positives = 58/231 (24%), Gaps = 29/231 (12%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKG--------NAEGLGETRVRE 108
+ AHP+D+ ++ + + R V G E LG+ R E
Sbjct: 4 LVSFHAHPNDDTTTCGGVLRKAHEDGHRVVLVLATRGELGYNPDGLLAEGETLGDRRAVE 63
Query: 109 LNESAALLLHNERAVSVQVMDF----QDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVT 164
+A +L + R + D + + + + I ++
Sbjct: 64 ARAAADVLGVD-RLEFLGYTDSGMTAAADGAGTFQTADVEEAARKLAAILREERADVLTV 122
Query: 165 FDSYGVSNHINHKSCYAAVKKLVDDYAQPKT-------KRNEQPPHVTALYLRSYKNNI- 216
+D G +H + + + K + + V A
Sbjct: 123 YDEKGTYGDPDHIQVHRVGTRAAELAGTAKVFQSTINREHIKANQRVLAEQAGVDLPAGP 182
Query: 217 -VLKYNS----FIWEILKILYDLISPFRRIIQALPPNTAAEK---DKLSLM 259
+ + Y + Q P +T D M
Sbjct: 183 DFGTPEAELTCRVDVSAYTEYKRKALLAHASQITPQSTLFTDLPEDTFRTM 233
>ref|NP_105992.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51778.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 229
Score = 117 bits (292), Expect = 2e-25
Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 29/190 (15%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKG---NAEGLGETRVRELNESA 113
I + AHPDD +F ++ + +KG +A L R E +A
Sbjct: 3 ILALGAHPDDIEIFMFGTLAVYAAQGAELTFAVATDGAKGGKSDATVLARVRREEATAAA 62
Query: 114 ALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNH 173
LL R +DF DG + + + + +++T H
Sbjct: 63 GLLGAAPR-----FLDFPDGELV-----ADAALIGALKTLIAGTGPDLVITHAPNDY--H 110
Query: 174 INHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYD 233
+H++ +V+ P + +
Sbjct: 111 ADHRALSDSVRIAASFA-VPVL-HADTMGGTGFSPTHY------------VDISAHAEIK 156
Query: 234 LISPFRRIIQ 243
+ Q
Sbjct: 157 AKAIRMHQSQ 166
>ref|NP_294927.1| (NC_001263) LmbE-related protein [Deinococcus radiodurans]
pir||B75424 LmbE-related protein - Deinococcus radiodurans (strain R1)
gb|AAF10773.1|AE001969_2 (AE001969) LmbE-related protein [Deinococcus radiodurans]
Length = 252
Score = 117 bits (292), Expect = 2e-25
Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 19/145 (13%)
Query: 56 EINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKG------NAEGLGETRVREL 109
I V AHPDDE + +++ + E + R
Sbjct: 2 RIMAVFAHPDDE-IGCIGTLAKHARRGDEVLLVWTTLGELASQFGDTEHEEVRRIRREHG 60
Query: 110 NESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYG 169
A + + + D + Q + ++T+
Sbjct: 61 AWVADKIGA--KYHFFDMGDSRMTGGRDE--------ALQLARLYATFRPHAVITWS--D 108
Query: 170 VSNHINHKSCYAAVKKLVDDYAQPK 194
H +H+ V PK
Sbjct: 109 DHPHPDHRMTAKIAFDAVTLARIPK 133
>gb|AAD41996.1|AC006233_13 (AC006233) hypothetical protein [Arabidopsis thaliana]
Length = 185
Score = 117 bits (292), Expect = 2e-25
Identities = 43/175 (24%), Positives = 60/175 (33%), Gaps = 52/175 (29%)
Query: 70 FFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHNERAVSVQVMD 129
FFSP I+ S +I+C S GNA+G+G R +EL+ + A+L
Sbjct: 51 FFSPTINYFTS---TACNLHILCFSTGNADGMGSIRDQELHRACAVLKV----------- 96
Query: 130 FQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCYAAVKKLVDD 189
+ I D DS H + I+TFD+YGV H NH+ + V
Sbjct: 97 IPFDKEGICDNDSC------------HCNEEHIITFDNYGVWGHCNHRDVHRGVL----- 139
Query: 190 YAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKILYDLISPFRRIIQA 244
NI KY + L IL P +
Sbjct: 140 ---------------------YVSLNIFRKYCGPVDIWLSILSAKRHPSKVSEAF 173
>ref|NP_535134.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL45450.1| (AE009394) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 800
Score = 114 bits (284), Expect = 2e-24
Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 32/181 (17%)
Query: 57 INLVIAHPDDEVMFFSPIISQL-NSYFPRTVPFNIICLSKGNAEG----------LGETR 105
+ AHPDDE + +++ RT+ I C ++G LG R
Sbjct: 33 VMHTGAHPDDEQ---NGLLAYFRTELGMRTI---IACSTRGEGGQNALGPERLGALGVIR 86
Query: 106 VRELNESAALLLHN------ERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
REL E+A ++ + A + F D+ + + + +
Sbjct: 87 SRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRWGQNRIVERLVRAYRKERP 146
Query: 160 QIIV-TF-DSYGVSNHINHKSCYAAVKKLVDDYAQPK-----TKRNEQPPHVTALYLRSY 212
I++ TF D G H H++ A K + A P +P V YL ++
Sbjct: 147 DIVIPTFLDVPGQHGH--HRAMTRAAKSAITLAADPSAYPEHFSEGLKPWQVAKFYLPAW 204
Query: 213 K 213
Sbjct: 205 S 205
>ref|NP_356006.1| (NC_003063) AGR_L_453p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88791.1| (AE008221) AGR_L_453p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 815
Score = 114 bits (284), Expect = 2e-24
Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 32/181 (17%)
Query: 57 INLVIAHPDDEVMFFSPIISQL-NSYFPRTVPFNIICLSKGNAEG----------LGETR 105
+ AHPDDE + +++ RT+ I C ++G LG R
Sbjct: 48 VMHTGAHPDDEQ---NGLLAYFRTELGMRTI---IACSTRGEGGQNALGPERLGALGVIR 101
Query: 106 VRELNESAALLLHN------ERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN 159
REL E+A ++ + A + F D+ + + + +
Sbjct: 102 SRELEEAARVIDADISWLGHGPADIIHDFGFSKDGDQTFGRWGQNRIVERLVRAYRKERP 161
Query: 160 QIIV-TF-DSYGVSNHINHKSCYAAVKKLVDDYAQPK-----TKRNEQPPHVTALYLRSY 212
I++ TF D G H H++ A K + A P +P V YL ++
Sbjct: 162 DIVIPTFLDVPGQHGH--HRAMTRAAKSAITLAADPSAYPEHFSEGLKPWQVAKFYLPAW 219
Query: 213 K 213
Sbjct: 220 S 220
>sp|P71311|YAIS_ECOLI HYPOTHETICAL 20.5 KDA PROTEIN IN ADHC-TAUA INTERGENIC REGION
gb|AAB18087.1| (U73857) hypothetical protein [Escherichia coli]
Length = 185
Score = 113 bits (281), Expect = 5e-24
Identities = 26/191 (13%), Positives = 55/191 (28%), Gaps = 29/191 (15%)
Query: 57 INLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGET-RVRELNESAAL 115
I + AHPDD + +++L + + ++ GN+ G R E + +
Sbjct: 19 ILAIGAHPDDIELGCGASLARLAQKG---IYIAAVVMTTGNSGTDGIIDRHEESRNALKI 75
Query: 116 LLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLN---QIIVTFDSYGVSN 172
L ++ ++F D + +S DI + + +I+ + +
Sbjct: 76 LGCHQTI----HLNFADTR----AHLQLNDMISALEDIIKNQIPSDVEIMRVYTMHDADR 127
Query: 173 HINHKSCYAAVKKLVDD-YAQPKTKRNEQPPHVTALYLRSYKNNIVLKYNSFIWEILKIL 231
H +H + Y A + S K
Sbjct: 128 HQDHLAVYQASMVACRTIPQILGYETPSTWLSFMPQVFESVKEEYFT------------- 174
Query: 232 YDLISPFRRII 242
L + +
Sbjct: 175 VKLAALKKHKS 185
>ref|NP_191372.1| (NM_115675) putative protein [Arabidopsis thaliana]
pir||T45973 hypothetical protein F9D24.40 - Arabidopsis thaliana
emb|CAB68151.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 124
Score = 111 bits (276), Expect = 2e-23
Identities = 39/116 (33%), Positives = 65/116 (55%), Gaps = 7/116 (6%)
Query: 70 FFSPIISQLNSYFPRTVPFNIICLSKGNAEGLGETRVRELNESAALLLHN-ERAVSVQVM 128
FFSP I+ L S +++CLS GNA+G+G R EL+ + A+L ++ +
Sbjct: 7 FFSPTINYLASN---ACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHP 63
Query: 129 DFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDSYGVSNHINHKSCYAAVK 184
+ QDG ++W D +T + + ++ H++ I+TFD+YGVS H NH+ + V
Sbjct: 64 NLQDGFGQLWSHDLLTEIIEE--EVTKHDI-HTIITFDNYGVSGHCNHRDVHRGVL 116
>ref|NP_334747.1| (NC_002755) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK44561.1| (AE006940) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 223
Score = 110 bits (275), Expect = 2e-23
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 19/148 (12%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAE-------GLGETRVR 107
+E+ V AHPDDE ++ + R +C + G A LGE R
Sbjct: 11 HEVLAVFAHPDDESFGLGAVLGDFTAQGTR---LRGLCFTHGEASTLGRTDRNLGEVRRE 67
Query: 108 ELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDS 167
EL +A +L + VQ++ + D ++ +T + +D +++ FD
Sbjct: 68 ELAAAAQVLGVDH----VQLLAYPDNGLAQIPLNELTQ---RVVDALA--GADLLLVFDD 118
Query: 168 YGVSNHINHKSCYAAVKKLVDDYAQPKT 195
GV+ H +H+ A P
Sbjct: 119 NGVTGHPDHRRATEAALAAASTPGIPVL 146
>ref|NP_214837.1| (NC_000962) hypothetical protein Rv0323c [Mycobacterium
tuberculosis H37Rv]
pir||D70526 hypothetical protein Rv0323c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB09612.1| (Z96800) hypothetical protein Rv0323c [Mycobacterium tuberculosis
H37Rv]
Length = 223
Score = 109 bits (270), Expect = 8e-23
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNAE-------GLGETRVR 107
+E+ V AHPDDE ++ + R +C + G A LGE R
Sbjct: 11 HEVLAVFAHPDDESFGLGAVLGDFTAQGTR---LRGLCFTHGEASTLGRTDRNLGEVRRE 67
Query: 108 ELNESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTFDS 167
EL +A +L + VQ++ + D ++ +T + +D +++ FD
Sbjct: 68 ELAAAAQVLGVDH----VQLLAYPDNGLAQIPLNELTQ---RVVDALA--GADLLLVFDD 118
Query: 168 YGVSNHINHKS 178
GV+ H +H+
Sbjct: 119 NGVTGHPDHRR 129
>ref|NP_285386.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
pir||A75600 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12252.1|AE001862_78 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
Length = 350
Score = 103 bits (257), Expect = 3e-21
Identities = 32/265 (12%), Positives = 64/265 (24%), Gaps = 65/265 (24%)
Query: 39 RNNASLQHIFPHKYGDYEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKG-- 96
R A L P + G + L+ HPDDE + + Q + I ++ G
Sbjct: 46 RQVARLAGTPPFRAGQ-RVLLLAPHPDDETLCCGGTVQQARAAGAEVF---IAWMTAGDG 101
Query: 97 -----------------NAEGLGETRVRELNESAALLLHNERAVSVQVMDFQDGMDEI-- 137
N LG+TR E +AA+L ++ + DG
Sbjct: 102 FEFDAALTEHVLVPRPHNMRALGQTRAGEAERAAAVLGVPADHTF--MLGYPDGGLFRLF 159
Query: 138 -----WDIDSITSSLSQ---------------------KIDIKNHNLNQIIVTFDSYGVS 171
+ + S+ + + +++
Sbjct: 160 TTNYATPFTAPRTQASRVYVTGALTPGHAFTGRNLETDLRRVLDRVQPDVVL--APAPQD 217
Query: 172 NHINHKSCYAAVKKLVDDYAQP-----KTKRNEQPPHVTALYLRSYKN----NIVLKYNS 222
H +H + +L+ + Q + +
Sbjct: 218 FHADHHTLSYIALRLMGERQQEDRLRFWVVHGGVEWPLPKGLHPTLGLTLPPRAARLPWQ 277
Query: 223 FIWEILKIL-YDLISPFRRIIQALP 246
+ + L + Q
Sbjct: 278 KVALTPEQEQVKLSAVNTYQTQTRV 302
>emb|CAC04222.1| (AL391515) conserved hypothetical protein [Streptomyces coelicolor]
Length = 247
Score = 100 bits (248), Expect = 3e-20
Identities = 27/200 (13%), Positives = 52/200 (25%), Gaps = 23/200 (11%)
Query: 55 YEINLVIAHPDDEVMFFSPIISQLNSYFPRTVPFNIICLSKGNA--EGLGETRVREL--- 109
V+AHPDD S ++ + + ++G A + L R L
Sbjct: 17 RRALAVVAHPDDLEYGCSAAVASWVADGKD---VAYLLATRGEAGIDTLDPGRAGPLREA 73
Query: 110 -NESAALLLHNERAVSVQVMDFQDGMDEIWDIDSITSSLSQKIDIKNHNLNQIIVTF--- 165
+AA + + D D + ++++T
Sbjct: 74 EQRAAAAAVGVRAVEFLDHRDGVIEYGASLRRD--------IAAAVRRHRPELVITLNHR 125
Query: 166 DSY--GVSNHINHKSCYAAVKKLVDDYAQPKTKRNEQPPHVTALY-LRSYKNNIVLKYNS 222
D++ G N +H + AV D + +R +
Sbjct: 126 DTWAAGAWNTPDHVAVGRAVLDAAADAGNRWIFPELAEQGLVPWNGVRWVAVANSPTPSH 185
Query: 223 FIWEILKILYDLISPFRRII 242
+ + S R
Sbjct: 186 AVSAEPGFEQGVRSLLRHRT 205
CPU time: 71.12 user secs. 2.30 sys. secs 73.42 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.315 0.163 0.468
Gapped
Lambda K H
0.270 0.0572 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193271293
Number of Sequences: 887402
Number of extensions: 8904662
Number of successful extensions: 26653
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 26366
Number of HSP's gapped (non-prelim): 113
length of query: 304
length of database: 277,845,442
effective HSP length: 55
effective length of query: 249
effective length of database: 229,038,332
effective search space: 57030544668
effective search space used: 57030544668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.2 bits)
S2: 73 (32.6 bits)
