Sequences with E-value BETTER than threshold (0.002) 360 2e-98
359 4e-98
356 4e-97
331 2e-89
296 4e-79
275 9e-73
253 5e-66
246 6e-64
229 6e-59
Sequences with E-value WORSE than threshold ref|NP_491651.1| (NM_059250) collagen [Caenorhabditis elegans] >... 41 0.033
pir||S22041 hypothetical protein 873 - common sunflower >gi|1299... 36 1.0
ref|NP_039884.1| (NC_001345) BBRF3 late reading frame [Human her... 35 2.9
Alignments
>ref|NP_002633.1| (NM_002642) phosphatidylinositol glycan, class C [Homo sapiens]
ref|XP_002139.1| (XM_002139) phosphatidylinositol glycan, class C [Homo sapiens]
sp|Q92535|PIGC_HUMAN PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)
pir||JC4969 pig-c protein - human
dbj|BAA12812.1| (D85418) phosphatidylinositol-glycan-class C (PIG-C) [Homo sapiens]
emb|CAB10071.1| (Z97195) PHOSPHATIDYLINISITOL-GLYCAN class C (PIG-C) [Homo sapiens]
gb|AAH06539.1|AAH06539 (BC006539) phosphatidylinositol glycan, class C [Homo sapiens]
Length = 297
Score = 360 bits (916), Expect = 2e-98
Identities = 86/286 (30%), Positives = 149/286 (52%), Gaps = 12/286 (4%)
Query: 41 VWRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFV 100
W+KVLY RQP+ DNYVD ++FL++LR+N++ Y+Y VV ++ VVIQQ V ++ +
Sbjct: 13 KWQKVLYERQPFPDNYVD-RRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
Query: 101 FSMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCRQGIP 160
+ M G + A W+ T + + ++ +D GE + +
Sbjct: 72 WWYMDEGLL---APHWLLGTGLASSLIGYVLF---DLIDGGEGRKKSGQTRWADLKSALV 125
Query: 161 LVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTAVNAA 220
+ SPVL+TLT + S DTI +S + H++ DY + ++N A
Sbjct: 126 FITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDY---GANAAIVSSTLSLNMA 182
Query: 221 TFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICALAIYF 280
F + +ASR+ R + ++ F I F L P+ + LK + R++V +T A+
Sbjct: 183 IFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGG 242
Query: 281 LMEV-PVFALLYCVVVVVISVVIPFFFVKLHGSMKDQINGPWDEAK 325
L+ + V A+L+ ++++ IS + PF+ ++L K+ I+GPWDEA+
Sbjct: 243 LLSISAVGAVLFALLLMSISCLCPFYLIRLQ-LFKENIHGPWDEAE 287
>dbj|BAB29152.1| (AK014096) data source:SPTR, source key:Q92535,
evidence:ISS~homolog to PHOSPHATIDYLINOSITOL-GLYCAN
BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)~putative [Mus
musculus]
gb|AAH06938.1|AAH06938 (BC006938) RIKEN cDNA 3110030E07 gene [Mus musculus]
Length = 297
Score = 359 bits (913), Expect = 4e-98
Identities = 85/286 (29%), Positives = 145/286 (49%), Gaps = 12/286 (4%)
Query: 41 VWRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFV 100
W+KVLY RQP+ DNYVD Q+FL++LR+N+ Y+Y VV ++ VVIQQ V ++ +
Sbjct: 13 KWQKVLYERQPFPDNYVD-QRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
Query: 101 FSMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCRQGIP 160
+ M G + A W+ T + V ++ +D G+ + +
Sbjct: 72 WWYMDEGLL---APQWLFGTGLASSLVGYVLF---DLIDGGDGRKKSGRTRWADLKSTLV 125
Query: 161 LVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTAVNAA 220
+ SPVL+TLT + S DTI ++ + H++ DY + ++N A
Sbjct: 126 FITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDY---GANAAIVSSTLSLNMA 182
Query: 221 TFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICALAIYF 280
F + +ASR+ R + ++ F I F L P+ + LK + R++V +T A
Sbjct: 183 IFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGG 242
Query: 281 LMEV-PVFALLYCVVVVVISVVIPFFFVKLHGSMKDQINGPWDEAK 325
L+ + V A+L+ +++ IS + P++ + L K+ I+GPWDEA+
Sbjct: 243 LLSISAVGAILFALLLFSISCLCPYYLIHLQ-LFKENIHGPWDEAE 287
>dbj|BAA22866.1| (AB000360) PIGC [Homo sapiens]
Length = 297
Score = 356 bits (905), Expect = 4e-97
Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 12/286 (4%)
Query: 41 VWRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFV 100
W+KVLY RQP+ DNYVD ++FL++LR+N++ Y+Y VV ++ VVIQQ V ++ +
Sbjct: 13 KWQKVLYERQPFPDNYVD-RRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
Query: 101 FSMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCRQGIP 160
+ M G + A W+ T + + ++ +D GE + +
Sbjct: 72 WWYMDEGLL---APHWLLGTGLASSLIGYVLF---DLIDGGEGRKKSGQTRWADLKSALV 125
Query: 161 LVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTAVNAA 220
+ SPVL+TLT + S DTI +S + H++ DY + ++N A
Sbjct: 126 FITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDY---GANAAIVSSTLSLNMA 182
Query: 221 TFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICALAIYF 280
F + +ASR+ R + ++ F I F L P+ + LK + R++V +T A+
Sbjct: 183 IFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGG 242
Query: 281 LMEV-PVFALLYCVVVVVISVVIPFFFVKLHGSMKDQINGPWDEAK 325
L+ + V A+L+ ++++ IS + F+ ++L K+ I+GPWDEA+
Sbjct: 243 LLSISAVGAVLFALLLMSISCLCSFYLIRLQ-LFKENIHGPWDEAE 287
>pir||T41379 probable phosphatidylinositol- glycan-class c protein - fission
yeast (Schizosaccharomyces pombe)
emb|CAA19108.1| (AL023592) phosphatidylinositol-glycan-class c [Schizosaccharomyces
pombe]
Length = 324
Score = 331 bits (840), Expect = 2e-89
Identities = 83/288 (28%), Positives = 144/288 (49%), Gaps = 11/288 (3%)
Query: 42 WRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFVF 101
W+KVL+ +Q Y DN++D + FL L++NVN+ ++ +V D+ V Q S VV + VF
Sbjct: 38 WKKVLWRKQDYPDNFID-ESFLNGLQRNVNIQVTDFWSLVADSLPVSQHLSSVVIFASVF 96
Query: 102 SMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCRQGIPL 161
+ ++ + +V+ AF+ V R+ +R F +Y MG+ + I +
Sbjct: 97 VSIYRNQLSCALVGFVSNVSAVAAFILWDFVLRKPCNNR-----TFPNY-MGIVKSCILI 150
Query: 162 VGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSE-RYQQNTAVNAA 220
V L LSP+L +LT + S D++ ++ +V +Y R + + NAA
Sbjct: 151 VLTLAGLSPILMSLTKSTSPDSVWAIAVWLFLANVFFHEYTTETIRPHVRLHNSLSTNAA 210
Query: 221 TFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICALAIYF 280
+++ASR+++ I+F + F L PI R + S A +++T + A
Sbjct: 211 LSASVVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIISAYIA 270
Query: 281 LMEVP--VFALLYCVVVVVISVVIPFFFVKLHGSMKDQINGPWDEAKP 326
L V V A ++ ++ IS + P +F+KL K++I+GPWD A P
Sbjct: 271 LNAVASVVIAFVFLSLIFFISFICPIWFIKLQ-RFKNEIHGPWDIALP 317
>ref|NP_501645.1| (NM_069244) T20D3.8.p [Caenorhabditis elegans]
pir||T25032 hypothetical protein T20D3.8 - Caenorhabditis elegans
emb|CAA92490.2| (Z68220) cDNA EST yk416d12.3 comes from this gene~cDNA EST
yk416d12.5 comes from this gene~cDNA EST yk586b10.3
comes from this gene~cDNA EST yk586b10.5 comes from this
gene [Caenorhabditis elegans]
Length = 282
Score = 296 bits (751), Expect = 4e-79
Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 24/293 (8%)
Query: 42 WRKVLYTRQPYEDNYV-DPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFV 100
W+K+LY +QP+ DNY QFL++LR+NV+V Y+Y V + + Y +
Sbjct: 7 WQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYFVL 66
Query: 101 FSMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCRQGIP 160
F +L L V + L FC + A + T FT ++
Sbjct: 67 FLNILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHARTIFTLFIFA------- 119
Query: 161 LVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTAVNAA 220
+PV++TLT + S DTI + S ++ DY + T+V+
Sbjct: 120 -----YAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDY---GVKAPVVSYPTSVSTG 171
Query: 221 TFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFT-ICALAIY 279
I + SR++ + L++ R+ + HV + L+ T C L+++
Sbjct: 172 LSSAIFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHV----YPCLSSTIFCFLSLF 227
Query: 280 FLMEVPVFALLYCVVVVVISVVIPFF---FVKLHGSMKDQINGPWDEAKPTNS 329
+ + F+L + ++ + I F + L + K I+GPWDEA P S
Sbjct: 228 SIYCISDFSLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEAVPLKS 280
>gb|AAF47758.1| (AE003477) CG12077 gene product [Drosophila melanogaster]
Length = 256
Score = 275 bits (697), Expect = 9e-73
Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 52/283 (18%)
Query: 42 WRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFVF 101
W K LY+ + Y DNY D FL+DLR N++ Y + + + V+ Q S + +L ++
Sbjct: 12 WVKNLYSNREYPDNYTD-ASFLKDLRTNLHCRIYTFGEAIAGITVLNNQISCITGFLILY 70
Query: 102 SMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCRQGIPL 161
+MLS V ++ + + + ++ A+ + T T L G
Sbjct: 71 QLMLSDSVSPTTILVPSCGITGIGYLCYRGRSLSWALLGEDSKTLVTVVLFG-------- 122
Query: 162 VGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTAVNAAT 221
L SP+L TLT A S DTI T++ + +++ Y
Sbjct: 123 ----YLFSPMLHTLTQAISTDTIYTMTFFVLLGNLIFGHYGL------------------ 160
Query: 222 FGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICALAIYFL 281
A++ + F L PI H ++ F IC +A+Y +
Sbjct: 161 ---------------DVAMVSKAAVFFVLYPIMTEANWHAGF---MLPIFAICCMALYCI 202
Query: 282 MEVPVFALLYCVVVVVISVVIPFFFVKLHGSMKDQINGPWDEA 324
PV LY + I+ V PF FV K I+GPWDEA
Sbjct: 203 SR-PVL-YLYASTTIFINFVCPFIFV-WQQQYKFNIHGPWDEA 242
>ref|NP_181043.1| (NM_129050) putative phosphatidylinositol-glycan synthase
[Arabidopsis thaliana]
pir||T00479 hypothetical protein F19I3.21 - Arabidopsis thaliana
gb|AAC12837.1| (AC004238) putative phosphatidylinositol-glycan synthase
[Arabidopsis thaliana]
Length = 303
Score = 253 bits (640), Expect = 5e-66
Identities = 75/296 (25%), Positives = 150/296 (50%), Gaps = 20/296 (6%)
Query: 39 GRVWRKVLY--TRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVF 96
G WRKV Y + Y+DNY D + FL+++ N NV + KV+ D+ + Q V
Sbjct: 12 GPKWRKVAYGGMQIGYDDNYTD-ESFLEEMVMNANVVRRDLLKVMKDSVSISQYLCIVAL 70
Query: 97 YLFVFSMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCR 156
+ V+ L +DE +L+ ++ +L F+ ++ + ++ + YL+ +
Sbjct: 71 VVLVWVHTLESSLDENSLLLLDLSLLASGFLILLLTE-----EKMLSLSLLLRYLVNISF 125
Query: 157 QGIPLVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYS------ER 210
L +L+P+ QTLT + S+D+I ++ + +H+ L DY+ +
Sbjct: 126 ----FTTGLYILAPIYQTLTRSISSDSIWAVTVSLLLLHLFLHDYSGSTIRAPGALKTPN 181
Query: 211 YQQNTAVNAATFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLT 270
+VNA+ + +ASR+ A+++F + F +P+ + +K + H++ +
Sbjct: 182 LTSCISVNASIVASVFVASRLPSRLHVFAVMLFSLQVFLFAPLVTYCIKKFNFGLHLLFS 241
Query: 271 FTICALAIYFLMEV-PVFALLYCVVVVVISVVIPFFFVKLHGSMKDQINGPWDEAK 325
F + L +Y + + +F L++ +V++++VV P++ +++ K +INGPWDEAK
Sbjct: 242 FALMGLTLYSIYALHRLFFLVFLSLVLLVNVVCPYWLIRMQ-EYKFEINGPWDEAK 296
>ref|NP_015249.1| (NC_001148) Required for synthesis of
N-acetylglucoaminylphosphatidylinositol, the first
intermediate in synthesis of
glycosylphosphatidylinositol (GPI) anchors; Gpi2p
[Saccharomyces cerevisiae]
sp|P46961|GPI2_YEAST N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN GPI2
pir||S61111 GPI2 protein - yeast (Saccharomyces cerevisiae)
dbj|BAA06128.1| (D29645) Gcr4p [Saccharomyces cerevisiae]
gb|AAB68262.1| (U41849) Gpi2p [Saccharomyces cerevisiae]
Length = 280
Score = 246 bits (622), Expect = 6e-64
Identities = 46/277 (16%), Positives = 108/277 (38%), Gaps = 26/277 (9%)
Query: 42 WRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFVF 101
W+++L+ +Q Y DNY DP F+ +LR E N+ + + ++ +
Sbjct: 6 WKRLLWLKQEYPDNYTDP-SFI-ELRAR---QKAESNQKSDRKLSEAARAQIRLDFISFY 60
Query: 102 SMMLSGRVDECALMWVNATLF-----TLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCR 156
+L+ ++ F T+ F ++ + VD +
Sbjct: 61 QTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSS-------FMDVK 113
Query: 157 QGIPLVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTA 216
+ + ++ LSPVL++L+ ++D+I TLS ++ + + S+ N +
Sbjct: 114 SSLIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFV----ISSTKSKDKPSNLS 169
Query: 217 VNAATFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICAL 276
N + +++SR+ ++ I + P V ++ ++ +
Sbjct: 170 TNILVALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNV 229
Query: 277 AIYFLMEVPVFALLYCVVVVVISVVIPFFFVKLHGSM 313
A+ ++ + L++ V I+V+ P +F+ +
Sbjct: 230 ALGWIYML----LIFFASVFYITVL-PKWFIYWKINY 261
>gb|AAA79518.1| (U23788) Gpi2p [Saccharomyces cerevisiae]
Length = 268
Score = 229 bits (579), Expect = 6e-59
Identities = 43/263 (16%), Positives = 102/263 (38%), Gaps = 21/263 (7%)
Query: 42 WRKVLYTRQPYEDNYVDPQQFLQDLRQNVNVATYEYNKVVLDTFVVIQQFSFVVFYLFVF 101
W+++L+ +Q Y DNY DP F+ +LR E N+ ++ + ++ +
Sbjct: 6 WKRLLWLKQEYPDNYTDP-SFI-ELRAR---QKAESNQKSDRKLSEARRAQIRLDFISFY 60
Query: 102 SMMLSGRVDECALMWVNATLF-----TLAFVFCIVVQRQQAVDRGEIPTPFTHYLMGLCR 156
+L+ ++ F T+ F ++ + VD +
Sbjct: 61 QTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSS-------FMDVK 113
Query: 157 QGIPLVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLNCYSERYQQNTA 216
+ + ++ LSPVL++L+ ++D+I TLS ++ + + S+ N +
Sbjct: 114 SSLIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFV----ISSTKSKDKPSNLS 169
Query: 217 VNAATFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRAHVVLTFTICAL 276
N + +++SR+ ++ I + P V ++ ++ +
Sbjct: 170 TNILVALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNV 229
Query: 277 AIYFLMEVPVFALLYCVVVVVIS 299
A+ ++ + L Y ++ +S
Sbjct: 230 ALGWIYMLLFSLLQYFILQFYLS 252
>ref|NP_491651.1| (NM_059250) collagen [Caenorhabditis elegans]
pir||T25835 hypothetical protein M01A12.1 - Caenorhabditis elegans
gb|AAB42221.1| (U88166) similar to collagen; coded for by C. elegans cDNA
yk160a5.5 [Caenorhabditis elegans]
Length = 599
Score = 40.8 bits (95), Expect = 0.033
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 233 RVFQSGA-----LIMFGILCFTLSPIPRHNLKHVSLRAHVVLT-FTICALAIYF--LMEV 284
F + C +S + +K + L ++V++ F ++ + L
Sbjct: 230 TRKHDFFSSIYTFFAFCVQCSAVSETDENYVKSMELYFYIVVSQFVGIRMSYIWRQLGSP 289
Query: 285 PVFALLYCVVVVVISVVIPFFFVKL 309
V L V+ ++V+ P F+ L
Sbjct: 290 TVAITLSVSTVIYVTVICPIVFIHL 314
>pir||S22041 hypothetical protein 873 - common sunflower
emb|CAA44478.1| (X62592) ORF 873 [Helianthus annuus]
emb|CAA37614.1| (X53537) orfH522 [Helianthus annuus]
Length = 291
Score = 35.8 bits (82), Expect = 1.0
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 248 FTLSPIPRHNLKHV----SLRAHVVLTFTICALAIYFLMEVPV-----FALLYCVVVVVI 298
FT+ PI L +LT + + + + V + L+ V++++I
Sbjct: 13 FTILPIFTMLLGRFLGTGCPGISTLLTLFFLIVTLLLIYRMRVSKRKKSSFLFFVILILI 72
Query: 299 SVVIPF---FFVKL 309
V+ F FF+ +
Sbjct: 73 YVLCTFSRSFFIFM 86
>ref|NP_039884.1| (NC_001345) BBRF3 late reading frame [Human herpesvirus 4]
sp|P03215|VGLM_EBV GLYCOPROTEIN M
pir||QQBE35 BBRF3 protein - human herpesvirus 4 (strain B95-8)
emb|CAA24825.1| (V01555) BBRF3 late reading frame [Human herpesvirus 4]
Length = 405
Score = 34.6 bits (79), Expect = 2.9
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 23/198 (11%)
Query: 86 VVIQQFSFVVFYLFVFSMMLSGRVDECALMWVNATLFTLAFVFCIVVQRQQAVDRGEIPT 145
V IQ S+ +L F L A V +
Sbjct: 140 VFIQVLSYKHVFLSAFVYFLH-----------FLASVLHACACVTRFSPVWVVKAQDNSI 188
Query: 146 PFTHYLMGLCRQGIPLVGVLILLSPVLQTLTVAYSNDTIVTLSSLSMFVHVLLTDYNYLN 205
P +L + P+V L L L+TL + +LS + +
Sbjct: 189 PQDTFLWWVVFYLKPVVTNLYLGCLALETL--------VFSLSVFLALGNSFYFMVGDMV 240
Query: 206 CYSERYQQNTAVNAATFGIILIASRIQRVFQSGALIMFGILCFTLSPIPRHNLKHVSLRA 265
+ + + +AS ++ F + + P+ R+ +
Sbjct: 241 LGAVNLFLILPIFWYILTEVWLASFLRHNFGFYCGMFIA-SIILILPLVRY---EAVFVS 296
Query: 266 HVVLTFTICALAIYFLME 283
+ T +AI ++
Sbjct: 297 AKLHTTVAINVAIIPILC 314
CPU time: 106.17 user secs. 2.30 sys. secs 108.47 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.317 0.169 0.486
Gapped
Lambda K H
0.270 0.0593 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219789150
Number of Sequences: 887402
Number of extensions: 10847289
Number of successful extensions: 54886
Number of sequences better than 10.0: 565
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 569
Number of HSP's that attempted gapping in prelim test: 54044
Number of HSP's gapped (non-prelim): 1036
length of query: 342
length of database: 277,845,442
effective HSP length: 54
effective length of query: 288
effective length of database: 229,925,734
effective search space: 66218611392
effective search space used: 66218611392
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.8 bits)
S2: 74 (32.9 bits)
