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GPI Anchor Biosynthesis Report: T25032 (PIG-C family, Caenorhabditis elegans)




BLASTP 2.1.1 [Aug-8-2000]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (282 letters)

Database: nr
           887,402 sequences; 277,845,442 total letters

Searching..................................................

Converged !!!

 Results of PSI-Blast iteration 2

Distribution of 9 Blast Hits on the Query Sequence

Sequences with E-value BETTER than threshold (0.002)


Sequences producing significant alignments:


 ref|NP_501645.1|  (NM_069244) T20D3.8.p [Caenorhabditis elegans] ...   345  5e-94

 ref|NP_002633.1|  (NM_002642) phosphatidylinositol glycan, class ...   334  9e-91

 dbj|BAA22866.1|  (AB000360) PIGC [Homo sapiens]                        330  1e-89

 dbj|BAB29152.1|  (AK014096) data source:SPTR, source key:Q92535, ...   330  1e-89

 pir||T41379  probable phosphatidylinositol- glycan-class c protei...   305  7e-82

 gb|AAF47758.1|  (AE003477) CG12077 gene product [Drosophila melan...   266  3e-70

 ref|NP_015249.1|  (NC_001148) Required for synthesis of N-acetylg...   263  3e-69

 gb|AAA79518.1|  (U23788) Gpi2p [Saccharomyces cerevisiae]              239  4e-62

 ref|NP_181043.1|  (NM_129050) putative phosphatidylinositol-glyca...   213  3e-54


Alignments


>ref|NP_501645.1| (NM_069244) T20D3.8.p [Caenorhabditis elegans]
 pir||T25032 hypothetical protein T20D3.8 - Caenorhabditis elegans
 emb|CAA92490.2| (Z68220) cDNA EST yk416d12.3 comes from this gene~cDNA EST
           yk416d12.5 comes from this gene~cDNA EST yk586b10.3
           comes from this gene~cDNA EST yk586b10.5 comes from this
           gene [Caenorhabditis elegans]
          Length = 282

 Score =  345 bits (878), Expect = 5e-94
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MATPTGWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMI 60
           MATPTGWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMI
Sbjct: 1   MATPTGWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMI 60

Query: 61  TMYFVLFLNILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHARTIFTLFIFAY 120
           TMYFVLFLNILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHARTIFTLFIFAY
Sbjct: 61  TMYFVLFLNILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHARTIFTLFIFAY 120

Query: 121 AFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSAIFLLS 180
           AFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSAIFLLS
Sbjct: 121 AFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSAIFLLS 180

Query: 181 RLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDFSLELS 240
           RLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDFSLELS
Sbjct: 181 RLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDFSLELS 240

Query: 241 ICFALLHIFILFICPLILILKQTGKCTIHGPWDEAVPLKSNT 282
           ICFALLHIFILFICPLILILKQTGKCTIHGPWDEAVPLKSNT
Sbjct: 241 ICFALLHIFILFICPLILILKQTGKCTIHGPWDEAVPLKSNT 282





>ref|NP_002633.1| (NM_002642) phosphatidylinositol glycan, class C [Homo sapiens]
 ref|XP_002139.1| (XM_002139) phosphatidylinositol glycan, class C [Homo sapiens]
 sp|Q92535|PIGC_HUMAN PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)
 pir||JC4969 pig-c protein - human
 dbj|BAA12812.1| (D85418) phosphatidylinositol-glycan-class C (PIG-C) [Homo sapiens]
 emb|CAB10071.1| (Z97195) PHOSPHATIDYLINISITOL-GLYCAN class C (PIG-C) [Homo sapiens]
 gb|AAH06539.1|AAH06539 (BC006539) phosphatidylinositol glycan, class C [Homo sapiens]
          Length = 297

 Score =  334 bits (850), Expect = 9e-91
 Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 18/280 (6%)

Query: 7   WQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYFVL 66
           WQK+LY +QPFPDNY   D +FL+ELRKN+    Y Y + VF     +  L  + ++ V+
Sbjct: 14  WQKVLYERQPFPDNYV--DRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVVI 71

Query: 67  FL----NILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKE-------HARTIFTL 115
           +      +L  +W   +L +  + +++ Y+ F   LI      K+         ++    
Sbjct: 72  WWYMDEGLLAPHW---LLGTGLASSLIGYVLF--DLIDGGEGRKKSGQTRWADLKSALVF 126

Query: 116 FIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSA 175
             F Y F+PV++TLT S+STDTIY+ S+   +    F DYG  A +VS   S++  + ++
Sbjct: 127 ITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFAS 186

Query: 176 IFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDF 235
           + L SRL       +++  A  + A     + ++    P     +    +  ++  +   
Sbjct: 187 VCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSI 246

Query: 236 SLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEA 275
           S   ++ FALL + I  +CP  LI  Q  K  IHGPWDEA
Sbjct: 247 SAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEA 286





>dbj|BAA22866.1| (AB000360) PIGC [Homo sapiens]
          Length = 297

 Score =  330 bits (840), Expect = 1e-89
 Identities = 84/280 (30%), Positives = 138/280 (49%), Gaps = 18/280 (6%)

Query: 7   WQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYFVL 66
           WQK+LY +QPFPDNY   D +FL+ELRKN+    Y Y + VF     +  L  + ++ V+
Sbjct: 14  WQKVLYERQPFPDNYV--DRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVVI 71

Query: 67  FL----NILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKE-------HARTIFTL 115
           +      +L  +W   +L +  + +++ Y+ F   LI      K+         ++    
Sbjct: 72  WWYMDEGLLAPHW---LLGTGLASSLIGYVLF--DLIDGGEGRKKSGQTRWADLKSALVF 126

Query: 116 FIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSA 175
             F Y F+PV++TLT S+STDTIY+ S+   +    F DYG  A +VS   S++  + ++
Sbjct: 127 ITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFAS 186

Query: 176 IFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDF 235
           + L SRL       +++  A  + A     + ++    P     +    +  ++  +   
Sbjct: 187 VCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSI 246

Query: 236 SLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEA 275
           S   ++ FALL + I  +C   LI  Q  K  IHGPWDEA
Sbjct: 247 SAVGAVLFALLLMSISCLCSFYLIRLQLFKENIHGPWDEA 286





>dbj|BAB29152.1| (AK014096) data source:SPTR, source key:Q92535,
           evidence:ISS~homolog to PHOSPHATIDYLINOSITOL-GLYCAN
           BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)~putative [Mus
           musculus]
 gb|AAH06938.1|AAH06938 (BC006938) RIKEN cDNA 3110030E07 gene [Mus musculus]
          Length = 297

 Score =  330 bits (840), Expect = 1e-89
 Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 21/287 (7%)

Query: 3   TPTG---WQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDM 59
           T T    WQK+LY +QPFPDNY   D +FL+ELRKN+    Y Y + VF     +  L  
Sbjct: 7   TDTPEVKWQKVLYERQPFPDNYV--DQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCS 64

Query: 60  ITMYFVLFL----NILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKE-------H 108
           + ++ V++      +L   W   +  +  + ++V Y+ F   LI      K+        
Sbjct: 65  VCVFVVIWWYMDEGLLAPQW---LFGTGLASSLVGYVLF--DLIDGGDGRKKSGRTRWAD 119

Query: 109 ARTIFTLFIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSV 168
            ++      F Y F+PV++TLT S+STDTIY+ ++   +    F DYG  A +VS   S+
Sbjct: 120 LKSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSL 179

Query: 169 STGLSSAIFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFS 228
           +  + +++ L SRL       +++  A  + A     + ++    P     +    +  +
Sbjct: 180 NMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSA 239

Query: 229 IYCISDFSLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEA 275
              +   S   +I FALL   I  +CP  LI  Q  K  IHGPWDEA
Sbjct: 240 FGGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEA 286





>pir||T41379 probable phosphatidylinositol- glycan-class c protein - fission
           yeast (Schizosaccharomyces pombe)
 emb|CAA19108.1| (AL023592) phosphatidylinositol-glycan-class c [Schizosaccharomyces
           pombe]
          Length = 324

 Score =  305 bits (774), Expect = 7e-82
 Identities = 77/284 (27%), Positives = 137/284 (48%), Gaps = 15/284 (5%)

Query: 6   GWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYFV 65
            W+K+L+RKQ +PDN+   D  FL  L++NV++   D+ S V   +    HL  + ++  
Sbjct: 37  PWKKVLWRKQDYPDNFI--DESFLNGLQRNVNIQVTDFWSLVADSLPVSQHLSSVVIFAS 94

Query: 66  LFLNILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEH------ARTIFTLFIFA 119
           +F++I  +  S  ++  V +++ V       F++  P N +         ++   + +  
Sbjct: 95  VFVSIYRNQLSCALVGFVSNVSAVAAFILWDFVLRKPCNNRTFPNYMGIVKSCILIVLTL 154

Query: 120 YAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKA--PVVSYP--TSVSTGLSSA 175
              +P++ +LT S S D++++ ++   + + FFH+Y  +   P V      S +  LS++
Sbjct: 155 AGLSPILMSLTKSTSPDSVWAIAVWLFLANVFFHEYTTETIRPHVRLHNSLSTNAALSAS 214

Query: 176 IFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDF 235
           + L SRLE        ++ A    A    FR  I HV+   +  +   + + S Y   + 
Sbjct: 215 VVLASRLEKSINVFFFILFAVHWFALFPIFRKYI-HVFSFYADMLMTLVLIISAYIALNA 273

Query: 236 SLELSICFALLHI--FILFICPLILILKQTGKCTIHGPWDEAVP 277
              + I F  L +  FI FICP+  I  Q  K  IHGPWD A+P
Sbjct: 274 VASVVIAFVFLSLIFFISFICPIWFIKLQRFKNEIHGPWDIALP 317





>gb|AAF47758.1| (AE003477) CG12077 gene product [Drosophila melanogaster]
          Length = 256

 Score =  266 bits (675), Expect = 3e-70
 Identities = 85/274 (31%), Positives = 130/274 (47%), Gaps = 40/274 (14%)

Query: 4   PTGWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMY 63
              W K LY  + +PDNY+  DA FLK+LR N+    Y +  A+ G       +  IT +
Sbjct: 9   RQPWVKNLYSNREYPDNYT--DASFLKDLRTNLHCRIYTFGEAIAGITVLNNQISCITGF 66

Query: 64  FVLFLNILHSNWS-INILYSVFSLTIVLYLFFCKFLIPNPANAKEHARTIFTLFIFAYAF 122
            +L+  +L  + S   IL     +T + YL + +    + A   E ++T+ T+ +F Y F
Sbjct: 67  LILYQLMLSDSVSPTTILVPSCGITGIGYLCY-RGRSLSWALLGEDSKTLVTVVLFGYLF 125

Query: 123 TPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSAIFLLSRL 182
           +P++ TLT +ISTDTIY+ +    + +  F  YG+   +VS          +A+      
Sbjct: 126 SPMLHTLTQAISTDTIYTMTFFVLLGNLIFGHYGLDVAMVS---------KAAV------ 170

Query: 183 EGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDFSLELSIC 242
                   +L    T   + A F   IF +         C ++L   YCIS   L L   
Sbjct: 171 ------FFVLYPIMTEANWHAGFMLPIFAI---------CCMAL---YCISRPVLYL--- 209

Query: 243 FALLHIFILFICPLILILKQTGKCTIHGPWDEAV 276
           +A   IFI F+CP I + +Q  K  IHGPWDEA+
Sbjct: 210 YASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAI 243





>ref|NP_015249.1| (NC_001148) Required for synthesis of
           N-acetylglucoaminylphosphatidylinositol, the first
           intermediate in synthesis of
           glycosylphosphatidylinositol (GPI) anchors; Gpi2p
           [Saccharomyces cerevisiae]
 sp|P46961|GPI2_YEAST N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN GPI2
 pir||S61111 GPI2 protein - yeast (Saccharomyces cerevisiae)
 dbj|BAA06128.1| (D29645) Gcr4p [Saccharomyces cerevisiae]
 gb|AAB68262.1| (U41849) Gpi2p [Saccharomyces cerevisiae]
          Length = 280

 Score =  263 bits (666), Expect = 3e-69
 Identities = 48/289 (16%), Positives = 106/289 (36%), Gaps = 25/289 (8%)

Query: 3   TPTGWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITM 62
           T + W+++L+ KQ +PDNY+      L+  +K  S    D K      ++      +   
Sbjct: 2   TRSPWKRLLWLKQEYPDNYTDPSFIELRARQKAESNQKSDRK------LSEAARAQIRLD 55

Query: 63  YFVLFLNILHSNWSINILYSVFSL----------TIVLYLFFCKFLIPNPANAKEHARTI 112
           +   +  IL++++       ++               + L   +  +    ++    ++ 
Sbjct: 56  FISFYQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDVKSS 115

Query: 113 FTLFIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGL 172
             +       +PV+++L+ + ++D+I++ S    ++   F     K+       S +  +
Sbjct: 116 LIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWY-IFVISSTKSKDKPSNLSTNILV 174

Query: 173 SSAIFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTI---FCFLSLFSI 229
           +    L SRL         L++   L+     + +    V P +S+ I   F  ++L  I
Sbjct: 175 ALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNVALGWI 234

Query: 230 YCISDFSLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEAVPL 278
           Y +  F   +     L   FI        I        +   WD   P+
Sbjct: 235 YMLLIFFASVFYITVLPKWFI-----YWKINYHKRDNDLLSTWDARTPI 278





>gb|AAA79518.1| (U23788) Gpi2p [Saccharomyces cerevisiae]
          Length = 268

 Score =  239 bits (606), Expect = 4e-62
 Identities = 46/276 (16%), Positives = 101/276 (35%), Gaps = 26/276 (9%)

Query: 3   TPTGWQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITM 62
           T + W+++L+ KQ +PDNY+      L+  +K  S    D K      ++      +   
Sbjct: 2   TRSPWKRLLWLKQEYPDNYTDPSFIELRARQKAESNQKSDRK------LSEARRAQIRLD 55

Query: 63  YFVLFLNILHSNWSINILYSVFSL----------TIVLYLFFCKFLIPNPANAKEHARTI 112
           +   +  IL++++       ++               + L   +  +    ++    ++ 
Sbjct: 56  FISFYQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDVKSS 115

Query: 113 FTLFIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGL 172
             +       +PV+++L+ + ++D+I++ S    ++   F     K+       S +  +
Sbjct: 116 LIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWY-IFVISSTKSKDKPSNLSTNILV 174

Query: 173 SSAIFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCI 232
           +    L SRL         L++   L+     + +    V P +S+ I        +Y  
Sbjct: 175 ALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNII--------VYSF 226

Query: 233 SDFSLELSICFALLHIFILFICPLILILKQTGKCTI 268
            +      I   L  +   FI    L    TGK  I
Sbjct: 227 LN-VALGWIYMLLFSLLQYFILQFYLSGSSTGKSII 261





>ref|NP_181043.1| (NM_129050) putative phosphatidylinositol-glycan synthase
           [Arabidopsis thaliana]
 pir||T00479 hypothetical protein F19I3.21 - Arabidopsis thaliana
 gb|AAC12837.1| (AC004238) putative phosphatidylinositol-glycan synthase
           [Arabidopsis thaliana]
          Length = 303

 Score =  213 bits (538), Expect = 3e-54
 Identities = 70/306 (22%), Positives = 124/306 (39%), Gaps = 62/306 (20%)

Query: 7   WQKILY--RKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYF 64
           W+K+ Y   +  + DNY+  D  FL+E+  N +VV  D    +   ++   +L ++ +  
Sbjct: 15  WRKVAYGGMQIGYDDNYT--DESFLEEMVMNANVVRRDLLKVMKDSVSISQYLCIVALVV 72

Query: 65  VLFLNILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHARTIFTLFIFA---YA 121
           +++++ L S+   N L  +    +               +     R +  +  F    Y 
Sbjct: 73  LVWVHTLESSLDENSLLLLDLSLLASGFLILLLTEEKMLSLSLLLRYLVNISFFTTGLYI 132

Query: 122 FTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYG---------VKAPVVSYPTSVSTGL 172
             P+ +TLT SIS+D+I++ ++   +   F HDY          +K P ++   SV+  +
Sbjct: 133 LAPIYQTLTRSISSDSIWAVTVSLLLLHLFLHDYSGSTIRAPGALKTPNLTSCISVNASI 192

Query: 173 SSAIFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCI 232
            +++F+ SRL        +++                       S  +F F  L + YCI
Sbjct: 193 VASVFVASRLPSRLHVFAVMLF----------------------SLQVFLFAPLVT-YCI 229

Query: 233 S--DFSLELSICFALLHIFILFI---------------------CPLILILKQTGKCTIH 269
              +F L L   FAL+ + +  I                     CP  LI  Q  K  I+
Sbjct: 230 KKFNFGLHLLFSFALMGLTLYSIYALHRLFFLVFLSLVLLVNVVCPYWLIRMQEYKFEIN 289

Query: 270 GPWDEA 275
           GPWDEA
Sbjct: 290 GPWDEA 295





CPU time:    84.82 user secs.	    3.34 sys. secs	   88.16 total secs.

  Database: nr
    Posted date:  Apr 21, 2002  2:19 PM
  Number of letters in database: 277,845,442
  Number of sequences in database:  887,402
  
Lambda     K      H
   0.316    0.173    0.494 

Gapped
Lambda     K      H
   0.270   0.0606    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176839075
Number of Sequences: 887402
Number of extensions: 7874434
Number of successful extensions: 44071
Number of sequences better than 10.0: 449
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 43632
Number of HSP's gapped (non-prelim): 746
length of query: 282
length of database: 277,845,442
effective HSP length: 50
effective length of query: 232
effective length of database: 233,475,342
effective search space: 54166279344
effective search space used: 54166279344
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.8 bits)
S2: 73 (32.5 bits)