Sequences with E-value BETTER than threshold (0.002) 431 e-119
428 e-119
426 e-118
345 6e-94
299 6e-80
297 1e-79
261 9e-69
229 5e-59
224 2e-57
Sequences with E-value WORSE than threshold ref|NP_478265.1| (NC_003240) cation efflux system protein [Nosto... 36 1.2
Alignments
>ref|NP_002633.1| (NM_002642) phosphatidylinositol glycan, class C [Homo sapiens]
ref|XP_002139.1| (XM_002139) phosphatidylinositol glycan, class C [Homo sapiens]
sp|Q92535|PIGC_HUMAN PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)
pir||JC4969 pig-c protein - human
dbj|BAA12812.1| (D85418) phosphatidylinositol-glycan-class C (PIG-C) [Homo sapiens]
emb|CAB10071.1| (Z97195) PHOSPHATIDYLINISITOL-GLYCAN class C (PIG-C) [Homo sapiens]
gb|AAH06539.1|AAH06539 (BC006539) phosphatidylinositol glycan, class C [Homo sapiens]
Length = 297
Score = 431 bits (1097), Expect = e-119
Identities = 278/297 (93%), Positives = 287/297 (96%)
Query: 1 MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQ 60
M AQ VT+T EVKWQKVLYERQPFPDNYVD+RFLEELRKNI+ARKYQYWAVVFESSVVIQ
Sbjct: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
Query: 61 QLCSVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADL 120
QLCSVCVFVVIWWYMDEGLLAP WL GTGLASSL+GYVLFDLIDGG+GRKKSG+TRWADL
Sbjct: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
Query: 121 KSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KS LVFITFTYGFSPVLKTLTESVSTDTIYAM+VFMLLGHLIFFDYGANAAIVSSTLSLN
Sbjct: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAF 240
MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKA TPRSYVGVTLLFAFSA
Sbjct: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
Query: 241 GGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS 297
GGLLSISAVGA+LFALLL SISCLCP+YLI LQLFKENIHGPWDEAEIKEDLSRFLS
Sbjct: 241 GGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
>dbj|BAB29152.1| (AK014096) data source:SPTR, source key:Q92535,
evidence:ISS~homolog to PHOSPHATIDYLINOSITOL-GLYCAN
BIOSYNTHESIS, CLASS C PROTEIN (PIG-C)~putative [Mus
musculus]
gb|AAH06938.1|AAH06938 (BC006938) RIKEN cDNA 3110030E07 gene [Mus musculus]
Length = 297
Score = 428 bits (1091), Expect = e-119
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQ 60
MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQ
Sbjct: 1 MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQ 60
Query: 61 QLCSVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADL 120
QLCSVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADL
Sbjct: 61 QLCSVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADL 120
Query: 121 KSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLN
Sbjct: 121 KSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLN 180
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAF 240
MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAF
Sbjct: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAF 240
Query: 241 GGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS 297
GGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS
Sbjct: 241 GGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS 297
>dbj|BAA22866.1| (AB000360) PIGC [Homo sapiens]
Length = 297
Score = 426 bits (1086), Expect = e-118
Identities = 277/297 (93%), Positives = 286/297 (96%)
Query: 1 MCAQRVTDTPEVKWQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQ 60
M AQ VT+T EVKWQKVLYERQPFPDNYVD+RFLEELRKNI+ARKYQYWAVVFESSVVIQ
Sbjct: 1 MYAQPVTNTKEVKWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQ 60
Query: 61 QLCSVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADL 120
QLCSVCVFVVIWWYMDEGLLAP WL GTGLASSL+GYVLFDLIDGG+GRKKSG+TRWADL
Sbjct: 61 QLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADL 120
Query: 121 KSTLVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLN 180
KS LVFITFTYGFSPVLKTLTESVSTDTIYAM+VFMLLGHLIFFDYGANAAIVSSTLSLN
Sbjct: 121 KSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLN 180
Query: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAF 240
MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKA TPRSYVGVTLLFAFSA
Sbjct: 181 MAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAV 240
Query: 241 GGLLSISAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLSRFLS 297
GGLLSISAVGA+LFALLL SISCLC +YLI LQLFKENIHGPWDEAEIKEDLSRFLS
Sbjct: 241 GGLLSISAVGAVLFALLLMSISCLCSFYLIRLQLFKENIHGPWDEAEIKEDLSRFLS 297
>pir||T41379 probable phosphatidylinositol- glycan-class c protein - fission
yeast (Schizosaccharomyces pombe)
emb|CAA19108.1| (AL023592) phosphatidylinositol-glycan-class c [Schizosaccharomyces
pombe]
Length = 324
Score = 345 bits (877), Expect = 6e-94
Identities = 94/288 (32%), Positives = 167/288 (57%), Gaps = 7/288 (2%)
Query: 6 VTDTPEVK--WQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLC 63
V + E+K W+KVL+ +Q +PDN++D+ FL L++N+ + +W++V +S V Q L
Sbjct: 28 VKEVVELKKPWKKVLWRKQDYPDNFIDESFLNGLQRNVNIQVTDFWSLVADSLPVSQHLS 87
Query: 64 SVCVFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKST 123
SV +F ++ + L+ + S++ ++L+D + ++ +KS
Sbjct: 88 SVVIFASVFVSIYRNQLSCALVGFVSNVSAVAAFILWDFVLRKPCNNRTFPNYMGIVKSC 147
Query: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANA----AIVSSTLSL 179
++ + G SP+L +LT+S S D+++A+AV++ L ++ F +Y + ++LS
Sbjct: 148 ILIVLTLAGLSPILMSLTKSTSPDSVWAIAVWLFLANVFFHEYTTETIRPHVRLHNSLST 207
Query: 180 NMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSA 239
N A+ ASV LASRL +S++ F + FA+ FAL+P+ +K + ++ + + +TL+ SA
Sbjct: 208 NAALSASVVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIISA 267
Query: 240 FGGLLSI-SAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEA 286
+ L ++ S V A +F L+F IS +CP + I LQ FK IHGPWD A
Sbjct: 268 YIALNAVASVVIAFVFLSLIFFISFICPIWFIKLQRFKNEIHGPWDIA 315
>gb|AAF47758.1| (AE003477) CG12077 gene product [Drosophila melanogaster]
Length = 256
Score = 299 bits (758), Expect = 6e-80
Identities = 83/278 (29%), Positives = 133/278 (46%), Gaps = 42/278 (15%)
Query: 14 WQKVLYERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVVIWW 73
W K LY + +PDNY D FL++LR N++ R Y + + +V+ Q+ + F++++
Sbjct: 12 WVKNLYSNREYPDNYTDASFLKDLRTNLHCRIYTFGEAIAGITVLNNQISCITGFLILYQ 71
Query: 74 YMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFITFTYGF 133
M ++P + + +GY+ + GR S D K+ + + F Y F
Sbjct: 72 LMLSDSVSPTTILVPSCGITGIGYLCY------RGRSLSWALLGEDSKTLVTVVLFGYLF 125
Query: 134 SPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASRL 193
SP+L TLT+++STDTIY M F+LLG+LIF YG + A+VS A+V
Sbjct: 126 SPMLHTLTQAISTDTIYTMTFFVLLGNLIFGHYGLDVAMVSK---------AAVF----- 171
Query: 194 PRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSISAVGAIL 253
F L+P++ + + +FA L IS L
Sbjct: 172 ----------------FVLYPIMTEANWHAGF-----MLPIFAICCM-ALYCISRPVLYL 209
Query: 254 FALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKED 291
+A I+ +CP+ + Q +K NIHGPWDEA ++E+
Sbjct: 210 YASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAIVEEN 247
>ref|NP_501645.1| (NM_069244) T20D3.8.p [Caenorhabditis elegans]
pir||T25032 hypothetical protein T20D3.8 - Caenorhabditis elegans
emb|CAA92490.2| (Z68220) cDNA EST yk416d12.3 comes from this gene~cDNA EST
yk416d12.5 comes from this gene~cDNA EST yk586b10.3
comes from this gene~cDNA EST yk586b10.5 comes from this
gene [Caenorhabditis elegans]
Length = 282
Score = 297 bits (754), Expect = 1e-79
Identities = 87/280 (31%), Positives = 135/280 (48%), Gaps = 18/280 (6%)
Query: 14 WQKVLYERQPFPDNYV--DQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
WQK+LY +QPFPDNY D +FL+ELRKN+ Y Y + VF + L + ++ V+
Sbjct: 7 WQKILYRKQPFPDNYSGGDAQFLKELRKNVSVVHYDYKSAVFGCMNFLTHLDMITMYFVL 66
Query: 72 WWYMDEGLLAPQW---LFGTGLASSLVGYVLF--DLIDGGDGRKKSGRTRWADLKSTLVF 126
+ +L W + + + ++V Y+ F LI K+ RT
Sbjct: 67 FL----NILHSNWSINILYSVFSLTIVLYLFFCKFLIPNPANAKEHART-------IFTL 115
Query: 127 ITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFAS 186
F Y F+PV++TLT S+STDTIY+ ++ + F DYG A +VS S++ + ++
Sbjct: 116 FIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSA 175
Query: 187 VCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGLLSI 246
+ L SRL +++ A + A + ++ P + + + +
Sbjct: 176 IFLLSRLEGDTPTLLLLVVAFTLHAYGAEFRNRIFHVYPCLSSTIFCFLSLFSIYCISDF 235
Query: 247 SAVGAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEA 286
S +I FALL I +CP LI Q K IHGPWDEA
Sbjct: 236 SLELSICFALLHIFILFICPLILILKQTGKCTIHGPWDEA 275
>ref|NP_181043.1| (NM_129050) putative phosphatidylinositol-glycan synthase
[Arabidopsis thaliana]
pir||T00479 hypothetical protein F19I3.21 - Arabidopsis thaliana
gb|AAC12837.1| (AC004238) putative phosphatidylinositol-glycan synthase
[Arabidopsis thaliana]
Length = 303
Score = 261 bits (662), Expect = 9e-69
Identities = 97/300 (32%), Positives = 159/300 (52%), Gaps = 22/300 (7%)
Query: 9 TPEVKWQKVLY--ERQPFPDNYVDQRFLEELRKNIYARKYQYWAVVFESSVVIQQLCSVC 66
P KW+KV Y + + DNY D+ FLEE+ N + V+ +S + Q LC V
Sbjct: 10 IPGPKWRKVAYGGMQIGYDDNYTDESFLEEMVMNANVVRRDLLKVMKDSVSISQYLCIVA 69
Query: 67 VFVVIWWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVF 126
+ V++W + E L L L+ G+++ L + + S L + F
Sbjct: 70 LVVLVWVHTLESSLDENSLLLLDLSLLASGFLILLLT---EEKMLSLSLLLRYLVNISFF 126
Query: 127 ITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGA---------NAAIVSSTL 177
T Y +P+ +TLT S+S+D+I+A+ V +LL HL DY ++S +
Sbjct: 127 TTGLYILAPIYQTLTRSISSDSIWAVTVSLLLLHLFLHDYSGSTIRAPGALKTPNLTSCI 186
Query: 178 SLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAF 237
S+N +I ASV +ASRLP LH F ++ F++Q+F P++ +K + G+ LLF+F
Sbjct: 187 SVNASIVASVFVASRLPSRLHVFAVMLFSLQVFLFAPLVTYCIKKFNF----GLHLLFSF 242
Query: 238 SAFG-GLLSISAV---GAILFALLLFSISCLCPYYLIHLQLFKENIHGPWDEAEIKEDLS 293
+ G L SI A+ ++F L+ ++ +CPY+LI +Q +K I+GPWDEA++ D++
Sbjct: 243 ALMGLTLYSIYALHRLFFLVFLSLVLLVNVVCPYWLIRMQEYKFEINGPWDEAKLCFDIT 302
>ref|NP_015249.1| (NC_001148) Required for synthesis of
N-acetylglucoaminylphosphatidylinositol, the first
intermediate in synthesis of
glycosylphosphatidylinositol (GPI) anchors; Gpi2p
[Saccharomyces cerevisiae]
sp|P46961|GPI2_YEAST N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN GPI2
pir||S61111 GPI2 protein - yeast (Saccharomyces cerevisiae)
dbj|BAA06128.1| (D29645) Gcr4p [Saccharomyces cerevisiae]
gb|AAB68262.1| (U41849) Gpi2p [Saccharomyces cerevisiae]
Length = 280
Score = 229 bits (579), Expect = 5e-59
Identities = 51/271 (18%), Positives = 106/271 (38%), Gaps = 35/271 (12%)
Query: 14 WQKVLYERQPFPDNYVDQRF--LEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
W+++L+ +Q +PDNY D F L +K +K + + +
Sbjct: 6 WKRLLWLKQEYPDNYTDPSFIELRARQKAESNQKSDRKLSEAARAQIR----------LD 55
Query: 72 WWYMDEGLLAPQWLFGTGLASSLVGY------VLFDLIDGGDGRKKSGRTRWA--DLKST 123
+ + +L +++ T G+ + I R K + D+KS+
Sbjct: 56 FISFYQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDVKSS 115
Query: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAI 183
L+ SPVLK+L+++ ++D+I+ ++ ++ L ++ + S LS N+ +
Sbjct: 116 LIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVIS-STKSKDKPSNLSTNILV 174
Query: 184 FASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGL 243
L+SRL ++ F + IQ+ + P V ++ S
Sbjct: 175 ALVAVLSSRLSTTIDVFCFLLICIQLNIILPT----------YLSVTNKVVPIISNIIVY 224
Query: 244 LSISAVGAILFALLLFSISC----LCPYYLI 270
++ ++ LL+F S + P + I
Sbjct: 225 SFLNVALGWIYMLLIFFASVFYITVLPKWFI 255
>gb|AAA79518.1| (U23788) Gpi2p [Saccharomyces cerevisiae]
Length = 268
Score = 224 bits (566), Expect = 2e-57
Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 27/259 (10%)
Query: 14 WQKVLYERQPFPDNYVDQRF--LEELRKNIYARKYQYWAVVFESSVVIQQLCSVCVFVVI 71
W+++L+ +Q +PDNY D F L +K +K + + +
Sbjct: 6 WKRLLWLKQEYPDNYTDPSFIELRARQKAESNQKSDRKLSEARRAQIR----------LD 55
Query: 72 WWYMDEGLLAPQWLFGTGLASSLVGY------VLFDLIDGGDGRKKSGRTRWA--DLKST 123
+ + +L +++ T G+ + I R K + D+KS+
Sbjct: 56 FISFYQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDVKSS 115
Query: 124 LVFITFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAI 183
L+ SPVLK+L+++ ++D+I+ ++ ++ L ++ + S LS N+ +
Sbjct: 116 LIITFAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVIS-STKSKDKPSNLSTNILV 174
Query: 184 FASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTLLFAFSAFGGL 243
L+SRL ++ F + IQ+ + P P + F A G +
Sbjct: 175 ALVAVLSSRLSTTIDVFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNVALGWI 234
Query: 244 LSISAVGAILFALLLFSIS 262
+LF+LL + I
Sbjct: 235 Y------MLLFSLLQYFIL 247
Score = 96.5 bits (238), Expect = 6e-19
Identities = 25/150 (16%), Positives = 51/150 (33%), Gaps = 49/150 (32%)
Query: 116 RWA------------------------------------------------DLKSTLVFI 127
D+KS+L+
Sbjct: 60 YQTILNTSFIYITFTYIYYYGFDPIPPTIFLSFITLIISRTKVDPLLSSFMDVKSSLIIT 119
Query: 128 TFTYGFSPVLKTLTESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASV 187
SPVLK+L+++ ++D+I+ ++ ++ L ++ + S LS N+ +
Sbjct: 120 FAMLTLSPVLKSLSKTTASDSIWTLSFWLTLWYIFVIS-STKSKDKPSNLSTNILVALVA 178
Query: 188 CLASRLPRSLHAFIMVTFAIQIFALWPMLQ 217
L+SRL ++ F + IQ+ + P
Sbjct: 179 VLSSRLSTTIDVFCFLLICIQLNIILPTYL 208
>ref|NP_478265.1| (NC_003240) cation efflux system protein [Nostoc sp. PCC 7120]
dbj|BAB77261.1| (AP003602) cation efflux system protein [Nostoc sp. PCC 7120]
Length = 1058
Score = 35.7 bits (82), Expect = 1.2
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 21/165 (12%)
Query: 72 WWYMDEGLLAPQWLFGTGLASSLVGYVLFDLIDGGDGRKKSGRTRWADLKSTLVFITFTY 131
+ + + + + +V + + G +GR WA L S L
Sbjct: 434 FQIVYDTSVEVRTSVILSTVIIVVVFAPIFTLSGIEGR-IFAPMGWAYLVSILSSTLVAM 492
Query: 132 GFSPVLKTL---TESVSTDTIYAMAVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVC 188
SP L + + + D + + + + ++ S+ + +
Sbjct: 493 TLSPALCAILLANQRLPDDETW-VTRWSQRLYRPLLNFSIKRP------SVVILTAIAAF 545
Query: 189 LASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKAYTPRSYVGVTL 233
+AS MV F+ P Q++ + Y G +L
Sbjct: 546 VAS----------MVIFSSLGRVFLPEFQERTLVNSLLLYPGTSL 580
CPU time: 94.63 user secs. 2.28 sys. secs 96.91 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.320 0.177 0.511
Gapped
Lambda K H
0.270 0.0620 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191477459
Number of Sequences: 887402
Number of extensions: 9127164
Number of successful extensions: 49766
Number of sequences better than 10.0: 658
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 642
Number of HSP's that attempted gapping in prelim test: 49085
Number of HSP's gapped (non-prelim): 1097
length of query: 297
length of database: 277,845,442
effective HSP length: 51
effective length of query: 246
effective length of database: 232,587,940
effective search space: 57216633240
effective search space used: 57216633240
T: 11
A: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.9 bits)
S2: 73 (32.4 bits)
