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GPI Anchor Biosynthesis Report: NP_491700.1 (GAA1 family, Caenorhabditis elegans)



Sequence Analysis
Name From To Source/E Description
LCR 3 15 SEG 12 2.2 2.5  
TM 1 41 61 toppred2=1.134  
LCR 162 173 SEG 12 2.2 2.5  
LCR 207 216 SEG 12 2.2 2.5  
TM 2 390 410 toppred2=1.947  
TM 3 425 445 toppred2=1.593  
TM 4 475 495 toppred2=1.907  
TM 5 524 544 toppred2=2.280  
TM 6 558 578 toppred2=1.554  
TM 7 607 627 toppred2=1.725  
Cluster 632 653 SAPS Negative charge cluster
LCR 645 654 SEG 12 2.2 2.5  
Cluster 645 670 SAPS Mixed charge cluster


Sequence Information
Protein NP_491700.1
Analysis
  • BlastP against nr

  • Output Created by a Suite of Single Sequence Analysis Techniques
    • Protein Description
    SEQ.SOURCE: gi|17507119|gb|NP_491700.1|NP_491700 GPI F33D11.9b.p [Caenorhabditis elegans].
    Protein Sequence 
    MENLLKFTNK KLKLLEMALE ISKDGGTTRP KILDKILKFR KVALIIAYIG AYLSAQWLFD
PVNMEVTRIS EHSLMPGLVT PKFDKSGIAI QLYRRFSDLP KSKSQQELIH TIFSDLGLEC
FTHKWRSKVA GNPMNGENVY GFIRGPRNDG AEAQMIVVQL GRSEKSRRMM SRMLAFVDYA
KDQVYWARDI VIVFVDGGEK NDSIEKAAFA LDAFLLKYQK IEALNSKKSI TVEADEIQAQ
TGALIGGVVY DLSGMAVKGQ HIVNIQTNGL NGQQVNLDVF NGITKIADSK HHSRVAIFGT
LHRHSNPYME YSPFIVPMRA LYTQAFISIE GIHSVLGKYG VQGLTVGLSH DYSEKQTGQF
IEEVSRMLNN VLERLHQSYF MYVLADDLHF SSIAMYIIPL TILVSPLVIS AYFEWTKIQE
FQFPVVHLAF HVLGFFYYIA TTYVFQTIGT TFVLQWMQWP FVGIDGCDGQ FTPSWSLINS
FLIFFMIPLG PYVFLKEPVR CVPSMRIVCL LETSLVLYGI CLTNFGLAIL CTAFVVPIVF
LMTTRSIFRS SVLAILNPIS VLAFVAINIP GMFGQLFPTI SQDSWLAAAQ SIALTAIRED
VEFKVNHFFL LCCFGYPIWN MLFACSMRYG PEPQGSLGIF GNGSDDDDGD DDDGPQKTNR
GHSTKKNKRE


    Author: Birgit.Eisenhaber@nt.imp.univie.ac.at on internet.
    Last modified: 28th January 2003