Sequences with E-value BETTER than threshold (0.002)
ref|NP_491700.1| (NM_059299) F33D11.9b.p [Caenorhabditis elegans... 1051 0.0
pir||T32771 hypothetical protein F33D11.9b - Caenorhabditis elegans 790 0.0
gb|AAF46094.1| (AE003435) CG3033 gene product [Drosophila melano... 696 0.0
ref|NP_034461.1| (NM_010331) GPI anchor attachment protein 1 [Mu... 639 0.0
ref|NP_572273.1| (NM_132045) CG3033 gene product [Drosophila mel... 620 e-176
ref|NP_003792.1| (NM_003801) anchor attachment protein 1; anchor... 602 e-171
emb|CAB65611.1| (AL136078) putative glycosylphosphatidylinositol... 568 e-160
ref|NP_197414.1| (NM_121918) GPAA1 - like protein [Arabidopsis t... 536 e-151
ref|NP_013189.1| (NC_001144) ER protein essential for attaching ... 496 e-139
pir||T46923 hypothetical protein DKFZp434E1512.1 - human >gi|701... 494 e-138
ref|NP_491701.1| (NM_059300) F33D11.9a.p [Caenorhabditis elegans... 175 3e-42
Sequences with E-value WORSE than threshold
ref|NP_244921.1| (NC_002570) BH4053~unknown conserved protein [B... 40 0.090
Alignments
>ref|NP_491700.1| (NM_059299) F33D11.9b.p [Caenorhabditis elegans]
gb|AAK68360.1|AF039720_13 (AF039720) Hypothetical protein F33D11.9b [Caenorhabditis elegans]
Length = 670
Score = 1051 bits (2689), Expect = 0.0
Identities = 670/670 (100%), Positives = 670/670 (100%)
Query: 1 MENLLKFTNKKLKLLEMALEISKDGGTTRPKILDKILKFRKVALIIAYIGAYLSAQWLFD 60
MENLLKFTNKKLKLLEMALEISKDGGTTRPKILDKILKFRKVALIIAYIGAYLSAQWLFD
Sbjct: 1 MENLLKFTNKKLKLLEMALEISKDGGTTRPKILDKILKFRKVALIIAYIGAYLSAQWLFD 60
Query: 61 PVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELIHTIFSDLGLEC 120
PVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELIHTIFSDLGLEC
Sbjct: 61 PVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELIHTIFSDLGLEC 120
Query: 121 FTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYA 180
FTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYA
Sbjct: 121 FTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYA 180
Query: 181 KDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQ 240
KDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQ
Sbjct: 181 KDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQ 240
Query: 241 TGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGT 300
TGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGT
Sbjct: 241 TGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGT 300
Query: 301 LHRHSNPYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLSHDYSEKQTGQF 360
LHRHSNPYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLSHDYSEKQTGQF
Sbjct: 301 LHRHSNPYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLSHDYSEKQTGQF 360
Query: 361 IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE 420
IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE
Sbjct: 361 IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE 420
Query: 421 FQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINS 480
FQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINS
Sbjct: 421 FQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINS 480
Query: 481 FLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVF 540
FLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVF
Sbjct: 481 FLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVF 540
Query: 541 LMTTRSIFRSSVLAILNPISVLAFVAINIPGMFGQLFPTISQDSWLAAAQSIALTAIRED 600
LMTTRSIFRSSVLAILNPISVLAFVAINIPGMFGQLFPTISQDSWLAAAQSIALTAIRED
Sbjct: 541 LMTTRSIFRSSVLAILNPISVLAFVAINIPGMFGQLFPTISQDSWLAAAQSIALTAIRED 600
Query: 601 VEFKVNHFFLLCCFGYPIWNMLFACSMRYGPEPQGSLGIFGNGSDDDDGDDDDGPQKTNR 660
VEFKVNHFFLLCCFGYPIWNMLFACSMRYGPEPQGSLGIFGNGSDDDDGDDDDGPQKTNR
Sbjct: 601 VEFKVNHFFLLCCFGYPIWNMLFACSMRYGPEPQGSLGIFGNGSDDDDGDDDDGPQKTNR 660
Query: 661 GHSTKKNKRE 670
GHSTKKNKRE
Sbjct: 661 GHSTKKNKRE 670
>pir||T32771 hypothetical protein F33D11.9b - Caenorhabditis elegans
Length = 885
Score = 790 bits (2020), Expect = 0.0
Identities = 500/518 (96%), Positives = 504/518 (96%), Gaps = 2/518 (0%)
Query: 1 MENLLKFTNKKLKLLEMALEISKDGGTTRPKILDKILKFRKVALIIAYIGAYLSAQWLFD 60
MENLLKFTNKKLKLLEMALEISKDGGTTRPKILDKILKFRKVALIIAYIGAYLSAQWLFD
Sbjct: 263 MENLLKFTNKKLKLLEMALEISKDGGTTRPKILDKILKFRKVALIIAYIGAYLSAQWLFD 322
Query: 61 PVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELIHTIFSDLGLEC 120
PVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELIHTIFSDLGLEC
Sbjct: 323 PVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELIHTIFSDLGLEC 382
Query: 121 FTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYA 180
FTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYA
Sbjct: 383 FTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYA 442
Query: 181 KDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQ 240
KDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQ
Sbjct: 443 KDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQ 502
Query: 241 TGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGT 300
TGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGT
Sbjct: 503 TGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGT 562
Query: 301 LHRHSNPYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLSHDYSEKQTGQF 360
LHRHSNPYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLSHDYSEKQTGQF
Sbjct: 563 LHRHSNPYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLSHDYSEKQTGQF 622
Query: 361 IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE 420
IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE
Sbjct: 623 IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE 682
Query: 421 FQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINS 480
FQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINS
Sbjct: 683 FQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINS 742
Query: 481 FLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLY 518
FLIFFMIPLGPYVFLK R + ++ +L VL
Sbjct: 743 FLIFFMIPLGPYVFLKT--RSIFRSSVLAILNPISVLA 778
>gb|AAF46094.1| (AE003435) CG3033 gene product [Drosophila melanogaster]
Length = 674
Score = 696 bits (1779), Expect = 0.0
Identities = 154/663 (23%), Positives = 272/663 (40%), Gaps = 89/663 (13%)
Query: 27 TTRPKILDKILK-FRKVALIIAYIGAYLSAQWLFDPVNMEVTRISEHSLMPGLVTP--KF 83
+T+ K++D + + RKV + Y+ L P T +SE++L PGLV P +
Sbjct: 10 STQSKLVDGLARHVRKVCYAL-YVAGVAWFFCLALPEFNHGTYLSENALSPGLVYPEIRI 68
Query: 84 DKSGIAIQLYRRFSDLPK---SKSQQELIHTIFSDLGLECFTHKWRSKVA---GNPMNGE 137
D + +AIQL K S + I ++ GLE TH + + G +G+
Sbjct: 69 DANRLAIQLLEELQRERKDHLSTTPHAWIAAKMNEFGLETHTHNYTLRYPFGGGKEYHGK 128
Query: 138 NVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSR----MLAFVDYAKDQVYWARDIVIV 193
N+YG +R PR E + + +S +LAF D+A+ + YWA+D++ +
Sbjct: 129 NIYGILRAPRIASTEGIVFAAPYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFL 188
Query: 194 FVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLS 253
E+ + A+L Y + + + A+ G+L + ++
Sbjct: 189 IT---------EQEQLGMQAWLEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQ 239
Query: 254 GMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKI-------ADSKHHSRVAIFGTLHRHSN 306
+ + V+++ GLNG+ NLD+FN + +I + K R RHS
Sbjct: 240 DLEIDH---VDVRIEGLNGKLPNLDMFNLVQRIMAREGIASGYKQAPRKK-----RRHSQ 291
Query: 307 PYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLS----HDYSEKQTG---- 358
+ E + F + L +Q+ G H + +Y + LT+ + H + G
Sbjct: 292 SHFEQN-FRQMLTMLASQSSGVPTGNHGLFHRYRIDALTIAANRRATHATLKGSPGSAAV 350
Query: 359 ---QFIEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEW 415
+ IE ++R LNN+LER HQS+F YV+ + + SI Y+ L LV+ + AY W
Sbjct: 351 PLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDYMPALVALVACAFLKAYLTW 410
Query: 416 TKIQEFQFPVVHLAFHV-----------------LGFFYYIATTYVFQTIGTTFV--LQW 456
+ + + A + Y Y+ T+ F+ +
Sbjct: 411 STLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYGSVLIYLTATLLIGFLCNVLP 470
Query: 457 MQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLV 516
+Q F+ I T S + SFL L P+V + P + + + LL
Sbjct: 471 LQQYFLEIPMGAAPLTTS---VLSFLSLIGFVL-PFVVVLPP-GGLELLHVAFLLIYGCA 525
Query: 517 LYGICLTNFGLAILCTAFVVPIVFLMTT-----RSIFRSSV---LAILNPISVLAFVAIN 568
L I L NF L + VP+V + T RS R+++ ++NP+ V+ + +
Sbjct: 526 LIVIGLLNFALGLFAAVLTVPLVIALETKEENSRSTLRNTIRLATLVMNPMMVVYVIVL- 584
Query: 569 IPGMFGQLFPTISQDSWL----AAAQSIALTAIREDVEFKVNHFFLLCCFGYPIWNMLFA 624
M FP + + AA + + + V + +F++C P+W + +
Sbjct: 585 --AMTFYQFPELPVQKIMLRAATAAMDASAYGLIDSVIYGNWLYFVICTIFLPLWIICWT 642
Query: 625 CSM 627
S+
Sbjct: 643 LSL 645
>ref|NP_034461.1| (NM_010331) GPI anchor attachment protein 1 [Mus musculus]
dbj|BAA82589.1| (AB002136) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Mus musculus]
dbj|BAA82591.1| (AB002138) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Mus musculus]
dbj|BAB03274.1| (AB006970) GPI anchor attachment protein [Mus musculus]
dbj|BAB03275.1| (AB006971) GPI anchor attachment protein [Mus musculus]
gb|AAH06697.1|AAH06697 (BC006697) GPI anchor attachment protein 1 [Mus musculus]
Length = 621
Score = 639 bits (1631), Expect = 0.0
Identities = 148/642 (23%), Positives = 256/642 (39%), Gaps = 93/642 (14%)
Query: 36 ILKFRKVALIIAYIGAYLSAQWLFDPVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRR 95
+L+ +++Y+ L P + T +SE+++ +V +F A R
Sbjct: 17 VLRLNTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAMGSTMVEEQFVGGDRARSFARD 76
Query: 96 FSDLPKSKSQQE--LIHTIFSDLGLECFTHKWRSKVAGNP-------MNGENVYGFIRGP 146
F+ K + +GLE +T + K+ ++G NVYG +R P
Sbjct: 77 FAAHRKKPGALPVAWLERSMRSVGLEVYTQSFSRKLPFPDETHERYMVSGTNVYGILRAP 136
Query: 147 RNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYAKDQVYWARDIVIVFVDGGEKNDSIEK 206
R+ E+ ++ V G + + + +LA + + Q+YWA+DI+ + D
Sbjct: 137 RSASTESLVLTVPCGPDATNSQAVGLLLALAAHFRGQIYWAKDIIFLVTD---------H 187
Query: 207 AAFALDAFLLKYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKGQHIVNIQ 266
+A+L Y I + S +Q + GA+ V +LS V +++
Sbjct: 188 DLLGTEAWLEAYHDINVTGIQSS------PLQGRAGAIQAAVALELSSDVVTS---LDVT 238
Query: 267 TNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGTLHRHSNPYMEYSPFIVPMRALYT--- 323
GLNGQ NLD+ N + + TL P +++ P++ L T
Sbjct: 239 VEGLNGQLPNLDLLNLFQTFC-----QKGGLLCTLQGKLQP-QDWTSLEGPLQGLQTLLL 292
Query: 324 ----QAFISIEGIHSVLGKYGVQGLTV-GLS----HDYSEKQTGQFIEEVSRMLNNVLER 374
QA G H + +YGV+ LT+ G++ + Y G+ +E + R LN++LER
Sbjct: 293 MVLRQASGRPHGPHGLFLRYGVEALTLRGINSFRQYKYDLATVGKALEGMFRKLNHLLER 352
Query: 375 LHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQ----------EFQFP 424
LHQS+F Y+L F SI +Y+ L+ L + A W ++ + P
Sbjct: 353 LHQSFFFYLLPALSRFVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAGKAPSP 412
Query: 425 VVH-LAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQF--TPSWSLINSF 481
L +G A + Q +G P +G F + +++ +
Sbjct: 413 GTPLLPTQGVGLASLTAPLLISQAMGLALYFL----PVLGQHLATQHFPVAEAEAVVLTL 468
Query: 482 L------IFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICLTNFGLAILCTAFV 535
L + V + P R ++++V L+ +L L I L NF L L A +
Sbjct: 469 LAIYVAGLALPHNTHRVVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLLAATM 528
Query: 536 VPIVFLMT---TRSIFRSSVLAILNPISVLAFVAINIPGMFGQLF---PTISQDSWLAAA 589
VP L R+++ +++L + +P L FG LF + LA
Sbjct: 529 VPAAALAKPHGPRTLY-AALLVVTSPAVTL----------FGSLFLWRELLEVPLSLAEG 577
Query: 590 QSIALTAIREDV----EFKVNHFFLLCCFGYP----IWNMLF 623
+ LTA+ + V + F +L YP WN+LF
Sbjct: 578 WQLFLTALAQGVLEHYTYGALLFPILALGLYPCWLLFWNVLF 619
>ref|NP_572273.1| (NM_132045) CG3033 gene product [Drosophila melanogaster]
gb|AAK77275.1| (AY047543) GH05723p [Drosophila melanogaster]
Length = 561
Score = 620 bits (1583), Expect = e-176
Identities = 137/569 (24%), Positives = 234/569 (41%), Gaps = 74/569 (13%)
Query: 27 TTRPKILDKILK-FRKVALIIAYIGAYLSAQWLFDPVNMEVTRISEHSLMPGLVTP--KF 83
+T+ K++D + + RKV + Y+ L P T +SE++L PGLV P +
Sbjct: 10 STQSKLVDGLARHVRKVCYAL-YVAGVAWFFCLALPEFNHGTYLSENALSPGLVYPEIRI 68
Query: 84 DKSGIAIQLYRRFSDLPK---SKSQQELIHTIFSDLGLECFTHKWRSKVA---GNPMNGE 137
D + +AIQL K S + I ++ GLE TH + + G +G+
Sbjct: 69 DANRLAIQLLEELQRERKDHLSTTPHAWIAAKMNEFGLETHTHNYTLRYPFGGGKEYHGK 128
Query: 138 NVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSR----MLAFVDYAKDQVYWARDIVIV 193
N+YG +R PR E + + +S +LAF D+A+ + YWA+D++ +
Sbjct: 129 NIYGILRAPRIASTEGIVFAAPYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFL 188
Query: 194 FVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLS 253
E+ + A+L Y + + + A+ G+L + ++
Sbjct: 189 IT---------EQEQLGMQAWLEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQ 239
Query: 254 GMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKI-------ADSKHHSRVAIFGTLHRHSN 306
+ + V+++ GLNG+ NLD+FN + +I + K R RHS
Sbjct: 240 DLEIDH---VDVRIEGLNGKLPNLDMFNLVQRIMAREGIASGYKQAPRKK-----RRHSQ 291
Query: 307 PYMEYSPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLS----HDYSEKQTG---- 358
+ E + F + L +Q+ G H + +Y + LT+ + H + G
Sbjct: 292 SHFEQN-FRQMLTMLASQSSGVPTGNHGLFHRYRIDALTIAANRRATHATLKGSPGSAAV 350
Query: 359 ---QFIEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEW 415
+ IE ++R LNN+LER HQS+F YV+ + + SI Y+ L LV+ + AY W
Sbjct: 351 PLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDYMPALVALVACAFLKAYLTW 410
Query: 416 TKIQEFQFPVVHLAFHV-----------------LGFFYYIATTYVFQTIGTTFV--LQW 456
+ + + A + Y Y+ T+ F+ +
Sbjct: 411 STLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYGSVLIYLTATLLIGFLCNVLP 470
Query: 457 MQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLV 516
+Q F+ I T S + SFL L P+V + P + + + LL
Sbjct: 471 LQQYFLEIPMGAAPLTTS---VLSFLSLIGFVL-PFVVVLPP-GGLELLHVAFLLIYGCA 525
Query: 517 LYGICLTNFGLAILCTAFVVPIVFLMTTR 545
L I L NF L + VP+V + T+
Sbjct: 526 LIVIGLLNFALGLFAAVLTVPLVIALETK 554
>ref|NP_003792.1| (NM_003801) anchor attachment protein 1; anchor attachment protein
1 (Gaa1p, yeast) homolog; glycophosphatidylinositol
anchor attachment 1 [Homo sapiens]
dbj|BAA24035.1| (AB006969) hGAA1 [Homo sapiens]
dbj|BAA82588.1| (AB002135) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Homo sapiens]
dbj|BAA82590.1| (AB002137) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Homo sapiens]
gb|AAH03171.1|AAH03171 (BC003171) anchor attachment protein 1 (Gaa1p, yeast) homolog [Homo
sapiens]
gb|AAH04129.1|AAH04129 (BC004129) anchor attachment protein 1 (Gaa1p, yeast) homolog [Homo
sapiens]
Length = 621
Score = 602 bits (1537), Expect = e-171
Identities = 148/642 (23%), Positives = 257/642 (39%), Gaps = 93/642 (14%)
Query: 36 ILKFRKVALIIAYIGAYLSAQWLFDPVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRR 95
+L+ +++Y+ L P + T +SE+++ +V +F A R
Sbjct: 17 VLRLNAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAMGSTMVEEQFAGGDRARAFARD 76
Query: 96 FSDLPKSKSQQE--LIHTIFSDLGLECFTHKWRSKVAGNP-------MNGENVYGFIRGP 146
F+ K + +GLE +T + K+ ++G NVYG +R P
Sbjct: 77 FAAHRKKSGALPVAWLERTMRSVGLEVYTQSFSRKLPFPDETHERYMVSGTNVYGILRAP 136
Query: 147 RNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYAKDQVYWARDIVIVFVDGGEKNDSIEK 206
R E+ ++ V G + + + +LA + + Q+YWA+DIV + E
Sbjct: 137 RAASTESLVLTVPCGSDSTNSQAVGLLLALAAHFRGQIYWAKDIVFLVT---------EH 187
Query: 207 AAFALDAFLLKYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKGQHIVNIQ 266
+A+L Y + + S +Q + GA+ V +LS V +++
Sbjct: 188 DLLGTEAWLEAYHDVNVTGMQSS------PLQGRAGAIQAAVALELSSDVVTS---LDVA 238
Query: 267 TNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGTLHRHSNPYMEYSPFIVPMRALYT--- 323
GLNGQ NLD+ N + + TL P +++ P++ L T
Sbjct: 239 VEGLNGQLPNLDLLNLFQTFC-----QKGGLLCTLQGKLQP-EDWTSLDGPLQGLQTLLL 292
Query: 324 ----QAFISIEGIHSVLGKYGVQGLTV-GLS----HDYSEKQTGQFIEEVSRMLNNVLER 374
QA G H + +Y V+ LT+ G++ + Y G+ +E + R LN++LER
Sbjct: 293 MVLRQASGRPHGSHGLFLRYRVEALTLRGINSFRQYKYDLVAVGKALEGMFRKLNHLLER 352
Query: 375 LHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE----------FQFP 424
LHQS+F+Y+L F SI +Y+ + L+ L + A W ++ E P
Sbjct: 353 LHQSFFLYLLPGLSRFVSIGLYMPAVGFLLLVLGLKALELWMQLHEAGMGLEEPGGAPGP 412
Query: 425 VVHL-AFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQF--TPSWSLINSF 481
V L +G +A + Q +G + P +G F + +++ +
Sbjct: 413 SVPLPPSQGVGLASLVAPLLISQAMGLALYVL----PVLGQHVATQHFPVAEAEAVVLTL 468
Query: 482 L------IFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICLTNFGLAILCTAFV 535
L + V + P R ++++V L+ +L L I LTNF L L +
Sbjct: 469 LAIYAAGLALPHNTHRVVSTQAPDRGWMALKLVALIYLALQLGCIALTNFSLGFLLATTM 528
Query: 536 VPIVFLMT---TRSIFRSSVLAILNPISVLAFVAINIPGMFGQLF---PTISQDSWLAAA 589
VP L R+++ +++L + +P + L G LF LA
Sbjct: 529 VPTAALAKPHGPRTLY-AALLVLTSPAATLL----------GSLFLWRELQEAPLSLAEG 577
Query: 590 QSIALTAIREDV----EFKVNHFFLLCCFGYP----IWNMLF 623
+ L A+ + V + F LL YP WN+LF
Sbjct: 578 WQLFLAALAQGVLEHHTYGALLFPLLSLGLYPCWLLFWNVLF 619
>emb|CAB65611.1| (AL136078) putative glycosylphosphatidylinositol anchor attachment
protein [Schizosaccharomyces pombe]
Length = 581
Score = 568 bits (1450), Expect = e-160
Identities = 129/589 (21%), Positives = 240/589 (39%), Gaps = 77/589 (13%)
Query: 52 YLSAQWLFD-PVNMEVTR--ISEHSLMPGLVTPKFDK--------SGIAIQLYRRFSDLP 100
+ W+F P N + R +SE +L+PG V F+ S A +
Sbjct: 28 LIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFENRYSKTVSSSLTAANTWSHLDASV 87
Query: 101 KSKSQQELIHTIFSDLGLECFTHKWRSKVAGNPMNGENVYGFIRGPRNDGAEAQMIVVQL 160
+ + + + IF+ +GL + + G+ NG N +R PR D E+ ++ V
Sbjct: 88 GTNTMYDDLEQIFTAMGLPTQKQNYSINIPGSEFNGSNFITTLRAPRGDATESLLLCVPW 147
Query: 161 ----GRSEKSRRMMSRMLAFVDYAKDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLL 216
G+ ++ ++ ++ + Y + W++DI++V D + +FL
Sbjct: 148 KDHIGQYNEAG--VALAISLLKYFQGWSLWSKDIILVIFDD---------PVYGPSSFLT 196
Query: 217 KYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVN 276
Y + + + ++ ++G++ G+ +L ++ + NGQ N
Sbjct: 197 SY------FDQTTPYISYTPLKIRSGSIQAGLSLELVTTE-NNSDVLEVLYQATNGQLPN 249
Query: 277 LDVFNGITKIADSKHHSRVAIFGTLHRHSNPYMEYSPFIVPM-RALYTQAFISIEGIHSV 335
LD+FN I++I +H + H+N Y+ + + + TQA ++ H++
Sbjct: 250 LDLFNTISRIF-MQHFNYPLRLQGYDFHANSGSSYTSRLKSLWMGMLTQAVSNVTSAHAL 308
Query: 336 LGKYGVQGLTVGLS----HDYSEKQTGQFIEEVSRMLNNVLERLHQSYFMYVLADDLHFS 391
+Y + LT+ + + + GQ IE R LNN+LE LHQS+F Y + D LHF
Sbjct: 309 FPQYRIDMLTLRMKVKDPFSFDMFRFGQAIESTFRSLNNLLEHLHQSFFFYFILDHLHFI 368
Query: 392 SIAMYIIPLTILVSPLVISAYFEWTKIQEFQFPVVHLAFHVLGFFYYIATTYV--FQTIG 449
SI Y+ + IL + ++ AY W ++ +F + F IA Y+ T
Sbjct: 369 SIGNYMPSILILAASFMLGAYRHWINHEKKIDLWRPFSFWLFSIFCTIAAYYLVSSSTKI 428
Query: 450 TTFVLQWMQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLKEPVRCVPSMRIVC 509
T F+ ++ F+GI + L+ S+ + + +F+
Sbjct: 429 TVFIFLYLMLTFIGIIFSTFMTSEDAELVLSYDL-----MSKSLFI-------------- 469
Query: 510 LLETSLVLYGICLTNFGLAILCTAFVVPIVFLMTTRSIFRSSVLAILNPISVLAFVAINI 569
S+V NF L+ + +VP+ F+ + S + A+L S F+
Sbjct: 470 ----SVVST----LNFSLSFVVAILLVPLQFISFRFNRRLSLLFAVLTYFSTFIFLCSLS 521
Query: 570 PGMFGQLFPTISQ-------DSWLAAAQSIALTAIREDVEFKVNHFFLL 611
+ G L P +SWL S+ + + ++ F V FF L
Sbjct: 522 KILNGPLVPFWLWAKEYELFNSWLMP--SVFMILVLPEIIFSVTSFFSL 568
>ref|NP_197414.1| (NM_121918) GPAA1 - like protein [Arabidopsis thaliana]
Length = 696
Score = 536 bits (1367), Expect = e-151
Identities = 151/708 (21%), Positives = 255/708 (35%), Gaps = 133/708 (18%)
Query: 20 EISKDGGTTRPK---ILDKILKFRKVALIIAYI-GAYLSAQWLFDPVNMEVTRISEHSLM 75
E+ D G+ + K I+ + + + + + A L P+ + T ISE++LM
Sbjct: 11 EVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALM 70
Query: 76 PGLVTPKFDKSGIA-----IQLYRRFSDLPKSKSQQELIHTIFSDLGLECFTHKWRSKVA 130
PG ++ ++ + F L Q+LI SD+G E K+ +
Sbjct: 71 PGSARSMLSNRDVSDGSKLVKDIKNF-RLNHEGQVQKLIGKYMSDMGAEVSYQKFHPE-- 127
Query: 131 GNPMN----------------------GENVYGFIRGPRNDGAEAQMIVVQL-----GRS 163
GN + G NV G IR PR DG E+ ++V G
Sbjct: 128 GNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDY 187
Query: 164 EK-SRRMMSRMLAFVDYAKDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIE 222
E S ++S + + + +V W +I V D AA+ + ++ +
Sbjct: 188 EDLSLGIVSSLFSLL----SRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSD 243
Query: 223 ALNSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNG 282
L + T AD + + G + +V + G + K + ++I NGQ NLD+ N
Sbjct: 244 LLKCDEQNT--ADNFR-RAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINV 300
Query: 283 ITKIADSKH--------------HSRVAIF-------GTLHRHSNP----------YMEY 311
+ +A + S + IF G L NP Y+E
Sbjct: 301 VNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEG 360
Query: 312 SPFIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLS-----------HDYSEKQTGQF 360
S + +LY+QA G H Y V +T+ +S HD+ + +
Sbjct: 361 SATLA--SSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLR-GARL 417
Query: 361 IEEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE 420
+E R +NN+LE+ HQS+F+Y+L F S+ +Y+I +LV+PL + A + +
Sbjct: 418 LEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCK 477
Query: 421 FQFPVVHLAFHVL-GFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPS----- 474
H + + A VF F++ + + I GQ +P+
Sbjct: 478 SLTNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPY---FICQVPGQHSPTNRSIM 534
Query: 475 WSLINSFLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVL---YGICL---TNFGLA 528
W +S L+ P P +L++ + G+CL NF A
Sbjct: 535 WGTTSSSLLLITFVTMPGC---SPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATA 591
Query: 529 ILCTAFVVPIVFLMTT-RSIFRSSVL-AILNPISVLAFVAINIPGMFGQL---------- 576
+ +VP + + RS L ++L + + I P MF +
Sbjct: 592 EIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLV 651
Query: 577 -------FPTISQDSWLAAAQSIALTAIREDVEFKVNHFFLLCCFGYP 617
F T + W A A V LC +P
Sbjct: 652 GLSLGGEFWTWLESLW---AWKSATYLYIGMVHLPCWLL-CLCILFHP 695
>ref|NP_013189.1| (NC_001144) ER protein essential for attaching GPI
(glycosylphosphatidylinositol) to protein; Gaa1p
[Saccharomyces cerevisiae]
sp|P39012|GAA1_YEAST GAA1 PROTEIN
pir||S45053 membrane protein END2 - yeast (Saccharomyces cerevisiae)
emb|CAA55944.1| (X79409) Gaa1 [Saccharomyces cerevisiae]
gb|AAB67592.1| (U53880) Gaa1p [Saccharomyces cerevisiae]
emb|CAA97649.1| (Z73260) ORF YLR088w [Saccharomyces cerevisiae]
Length = 614
Score = 496 bits (1265), Expect = e-139
Identities = 115/536 (21%), Positives = 215/536 (39%), Gaps = 79/536 (14%)
Query: 31 KILDK--ILKFRKVALIIAYIGAYLSAQWLFDPVNM---EVTRISEHSLMPGLVTPKFDK 85
+I+D + + + +I+ + A + T ISE++LMP F +
Sbjct: 10 RIVDMGLVPRIIALLPVISMLCALFGFISIAILPMDGQYRRTYISENALMPSQAYSYFRE 69
Query: 86 SGIAI-QLYR-RFSDLPK--SKSQQELIHTIFSDLGLECFTHKWRSKVAGNPMNGENVYG 141
S I + YR + ++ S + L+ + + G ++ + N GE +YG
Sbjct: 70 SEWNILRGYRSQIKEMVNMTSMERNNLMGSWLQEFGT-------KTAIYENEQYGETLYG 122
Query: 142 FIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRML--AFVDYAKDQVYWARDIVIVFVDGGE 199
+ PR DG EA ++ V S+ + L + + W+++I++VF
Sbjct: 123 VMHAPRGDGTEAMVLAVPWFNSDDEFNIGGAALGVSLARFFSRWPVWSKNIIVVFS---- 178
Query: 200 KNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKG 259
E AL +++ Y + G++ VV D S
Sbjct: 179 -----ENPRAALRSWVEAYH---------------TSLDLTGGSIEAAVVLDYSSTEDFF 218
Query: 260 QHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHS-RVAIFGTLHRHSNPYMEYSPFIVPM 318
++ V I +GLNG+ NLD+ N I+ ++H +V++ G +S +
Sbjct: 219 EY-VEISYDGLNGELPNLDLVN--IAISITEHEGMKVSLHGLPSDQLTNNNFWSRLKILC 275
Query: 319 RALYTQAFISIEGIHS--VLGKYGVQGLTVGLSHDYSEKQT--GQFIEEVSRMLNNVLER 374
+ A ++ H + +Q +T+ + T G+ E + R +NN+LE+
Sbjct: 276 LGIRDWALSGVKKPHGNEAFSGWRIQSVTLKAHGNSGHDITTFGRIPEAMFRSINNLLEK 335
Query: 375 LHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQEFQFPVVHLAFHVLG 434
HQS+F Y+L F SI+ Y L S + +S F + + F ++ A+ +
Sbjct: 336 FHQSFFFYLLLAPRQFVSISSY------LPSAVALSIAFAISSLNAF----INNAYANIS 385
Query: 435 FFY---YIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINSFLI---FFMIP 488
F +A F ++ +FV+ F+ I PS L+ + + F +
Sbjct: 386 LFSEYNLVALLVWFVSLVISFVV---SQAFLLI--------PSSGLLMTISMASCFLPLI 434
Query: 489 LGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVFLMTT 544
L + + EP+ ++ V L SLV + + NF +A+L P+ F+ T
Sbjct: 435 LSRKIHISEPLSYR--LKNVAFLYFSLVSTSLLMINFAMALLIGTLAFPMTFVKTI 488
>pir||T46923 hypothetical protein DKFZp434E1512.1 - human
emb|CAB75660.1| (AL157437) hypothetical protein [Homo sapiens]
gb|AAH06383.1|AAH06383 (BC006383) Unknown (protein for MGC:12663) [Homo sapiens]
Length = 499
Score = 494 bits (1259), Expect = e-138
Identities = 130/535 (24%), Positives = 220/535 (40%), Gaps = 84/535 (15%)
Query: 134 MNGENVYGFIRGPRNDGAEAQMIVVQLGRSEKSRRMMSRMLAFVDYAKDQVYWARDIVIV 193
++G NVYG +R PR E+ ++ V G + + + +LA + + Q+YWA+DIV +
Sbjct: 2 VSGTNVYGILRAPRAASTESLVLTVPCGSDSTNSQAVGLLLALAAHFRGQIYWAKDIVFL 61
Query: 194 FVDGGEKNDSIEKAAFALDAFLLKYQKIEALNSKKSITVEADEIQAQTGALIGGVVYDLS 253
E +A+L Y + + S +Q + GA+ V +LS
Sbjct: 62 VT---------EHDLLGTEAWLEAYHDVNVTGMQSS------PLQGRAGAIQAAVALELS 106
Query: 254 GMAVKGQHIVNIQTNGLNGQQVNLDVFNGITKIADSKHHSRVAIFGTLHRHSNPYMEYSP 313
V +++ GLNGQ NLD+ N + + TL P +++
Sbjct: 107 SDVVTS---LDVAVEGLNGQLPNLDLLNLFQTFC-----QKGGLLCTLQGKLQP-EDWTS 157
Query: 314 FIVPMRALYT-------QAFISIEGIHSVLGKYGVQGLTV-GLS----HDYSEKQTGQFI 361
P++ L T QA G H + +Y V+ LT+ G++ + Y G+ +
Sbjct: 158 LDGPLQGLQTLLLMVLRQASGRPHGSHGLFLRYRVEALTLRGINSFRQYKYDLVAVGKAL 217
Query: 362 EEVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEWTKIQE- 420
E + R LN++LERLHQS+F+Y+L F SI +Y+ + L+ L + A W ++ E
Sbjct: 218 EGMFRKLNHLLERLHQSFFLYLLPGLSRFVSIGLYMPAVGFLLLVLGLKALELWMQLHEA 277
Query: 421 ---------FQFPVVHL-AFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQ 470
P V L +G +A + Q +G + P +G
Sbjct: 278 GMGLEEPGGAPGPSVPLPPSQGVGLASLVAPLLISQAMGLALYVL----PVLGQHVATQH 333
Query: 471 F--TPSWSLINSFL------IFFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGICL 522
F + +++ + L + V + P R ++++V L+ +L L I L
Sbjct: 334 FPVAEAEAVVLTLLAIYAAGLALPHNTHRVVSTQAPDRGWMALKLVALIYLALQLGCIAL 393
Query: 523 TNFGLAILCTAFVVPIVFLMT---TRSIFRSSVLAILNPISVLAFVAINIPGMFGQLF-- 577
TNF L L +VP L R+++ +++L + +P + L G LF
Sbjct: 394 TNFSLGFLLATTMVPTAALAKPHGPRTLY-AALLVLTSPAATLL----------GSLFLW 442
Query: 578 -PTISQDSWLAAAQSIALTAIREDV----EFKVNHFFLLCCFGYP----IWNMLF 623
LA + L A+ + V + F LL YP WN+LF
Sbjct: 443 RELQEAPLSLAEGWQLFLAALAQGVLEHHTYGALLFPLLSLGLYPCWLLFWNVLF 497
>ref|NP_491701.1| (NM_059300) F33D11.9a.p [Caenorhabditis elegans]
pir||T32772 hypothetical protein F33D11.9a - Caenorhabditis elegans
gb|AAB96702.1| (AF039720) Hypothetical protein F33D11.9a [Caenorhabditis elegans]
Length = 229
Score = 175 bits (440), Expect = 3e-42
Identities = 106/124 (85%), Positives = 110/124 (88%), Gaps = 2/124 (1%)
Query: 395 MYIIPLTILVSPLVISAYFEWTKIQEFQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVL 454
MYIIPLTILVSPLVISAYFEWTKIQEFQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVL
Sbjct: 1 MYIIPLTILVSPLVISAYFEWTKIQEFQFPVVHLAFHVLGFFYYIATTYVFQTIGTTFVL 60
Query: 455 QWMQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLKEPVRCVPSMRIVCLLETS 514
QWMQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLK R + ++ +L
Sbjct: 61 QWMQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLKT--RSIFRSSVLAILNPI 118
Query: 515 LVLY 518
VL
Sbjct: 119 SVLA 122
>ref|NP_244921.1| (NC_002570) BH4053~unknown conserved protein [Bacillus halodurans]
dbj|BAB07772.1| (AP001520) BH4053~unknown conserved protein [Bacillus halodurans]
Length = 341
Score = 40.4 bits (94), Expect = 0.090
Identities = 42/191 (21%), Positives = 72/191 (36%), Gaps = 18/191 (9%)
Query: 439 IATTYVFQTIGTTFVLQWMQWPFVGIDGCDGQFTPSWSLINSFLIFFMIPLGPYVFLKEP 498
I +F +G FV Q + + ID PS L F + + P V +
Sbjct: 140 IIPILIFCLLGVLFVFQSLLGFPITIDFTQQGNWPSA------LTFTALNILPLVAVLGA 193
Query: 499 VRCVPSMRI---VCLLETSLVLYGICLT-NFGLAILCTAFVV---PIVFLMTTRSIFRSS 551
V + V + + L+L I N L + VV P+ +M +
Sbjct: 194 VGHRIRHQGEIWVASIGSGLILGAISFLYNESLIQVAGDLVVYEIPLFAIMKHYPYYMVL 253
Query: 552 VLAILNPISVLAFVAINIPGMFGQLFPTISQDSWLAAAQSIALTAIREDVEFKVNHFFLL 611
V++ L +++ A I G+ ++ ++ SWL +ALT + V F L
Sbjct: 254 VMSGLLWLAIYTTAAAGIFGLSSRMGAVLNWPSWL-----LALTLLGFMVPLTTFGFSTL 308
Query: 612 CCFGYPIWNML 622
YP++ +L
Sbjct: 309 IAVLYPLYGIL 319
CPU time: 148.79 user secs. 4.31 sys. secs 153.10 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.314 0.167 0.469
Gapped
Lambda K H
0.270 0.0586 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376974645
Number of Sequences: 887402
Number of extensions: 17206726
Number of successful extensions: 78834
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 78646
Number of HSP's gapped (non-prelim): 260
length of query: 670
length of database: 277,845,442
effective HSP length: 56
effective length of query: 614
effective length of database: 228,150,930
effective search space: 140084671020
effective search space used: 140084671020
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.7 bits)
S2: 77 (34.1 bits)