Sequences with E-value BETTER than threshold (0.002) 1019 0.0
671 0.0
624 e-177
569 e-161
557 e-157
496 e-139
418 e-115
407 e-112
407 e-112
381 e-104
Sequences with E-value WORSE than threshold gb|AAH08920.1|AAH08920 (BC008920) Unknown (protein for IMAGE:363... 36 1.6
ref|NP_391526.1| (NC_000964) similar to antibiotic resistance pr... 35 3.5
Alignments
>ref|NP_197414.1| (NM_121918) GPAA1 - like protein [Arabidopsis thaliana]
Length = 696
Score = 1019 bits (2607), Expect = 0.0
Identities = 696/696 (100%), Positives = 696/696 (100%)
Query: 1 MAAVNRDNEEEVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAK 60
MAAVNRDNEEEVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAK
Sbjct: 1 MAAVNRDNEEEVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAK 60
Query: 61 NTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVS 120
NTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVS
Sbjct: 61 NTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVS 120
Query: 121 YQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYD 180
YQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYD
Sbjct: 121 YQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYD 180
Query: 181 FINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFK 240
FINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFK
Sbjct: 181 FINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFK 240
Query: 241 VSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINV 300
VSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINV
Sbjct: 241 VSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINV 300
Query: 301 VNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEG 360
VNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEG
Sbjct: 301 VNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEG 360
Query: 361 SATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEG 420
SATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEG
Sbjct: 361 SATLASSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEG 420
Query: 421 TIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLT 480
TIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLT
Sbjct: 421 TIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLT 480
Query: 481 NSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSS 540
NSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSS
Sbjct: 481 NSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSS 540
Query: 541 SLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVP 600
SLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVP
Sbjct: 541 SLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVP 600
Query: 601 TCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFW 660
TCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFW
Sbjct: 601 TCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFW 660
Query: 661 TWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHPS 696
TWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHPS
Sbjct: 661 TWLESLWAWKSATYLYIGMVHLPCWLLCLCILFHPS 696
>ref|NP_034461.1| (NM_010331) GPI anchor attachment protein 1 [Mus musculus]
dbj|BAA82589.1| (AB002136) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Mus musculus]
dbj|BAA82591.1| (AB002138) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Mus musculus]
dbj|BAB03274.1| (AB006970) GPI anchor attachment protein [Mus musculus]
dbj|BAB03275.1| (AB006971) GPI anchor attachment protein [Mus musculus]
gb|AAH06697.1|AAH06697 (BC006697) GPI anchor attachment protein 1 [Mus musculus]
Length = 621
Score = 671 bits (1713), Expect = 0.0
Identities = 185/704 (26%), Positives = 283/704 (39%), Gaps = 117/704 (16%)
Query: 18 SPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSM 77
S ++ R + R+ + L V S V A LA L P L + TY+SENA+
Sbjct: 5 SDPVRRRALARIVLRLNTPLCVLSYVAGIAWFLA-LAFPPLTQRTYMSENAMGSTMVEEQ 63
Query: 78 LSNRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVSYQKFH---PEGNQFHPL 134
D + +D R + + M +G EV Q F P ++ H
Sbjct: 64 FVGGDRA--RSFARDFAAHRKKPGALPVAWLERSMRSVGLEVYTQSFSRKLPFPDETHER 121
Query: 135 HFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGI 194
+ S G NV GI+RAPR ES+VL P ++G+
Sbjct: 122 YMVS----------------GTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGL 162
Query: 195 VSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTAD 254
+ +L + + +KDII+LV D D AWL YH V+ + Q
Sbjct: 163 LLALAAHFRGQIYWAKDIIFLVTDH---DLLGTEAWLEAYH--DINVTGIQSSPLQG--- 214
Query: 255 NFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVK 314
RAG + AA+ L++ S +L + E NGQ+PNLDL+N+
Sbjct: 215 ---RAGAIQAAVALEL---SSDVVTSLDVTVEGLNGQLPNLDLLNL-------------- 254
Query: 315 VEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALG 374
+ F + + L L P + L+G TL + QA G
Sbjct: 255 ------------FQTFCQKGGLLCTLQGKLQPQDWTSLEGP--LQGLQTLLLMVLRQASG 300
Query: 375 IPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRG-ARLLEGTIRSVNNLLEKFH 433
P GPHG F Y V+A+TL+ F RQ+ + L + LEG R +N+LLE+ H
Sbjct: 301 RPHGPHGLFLRYGVEALTLRGINSF------RQYKYDLATVGKALEGMFRKLNHLLERLH 354
Query: 434 QSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLTNSTHNPTENFKSW 493
QSFF Y+L + S+F+S+G+YM A L+ L + A L++ L + NP E K+
Sbjct: 355 QSFFFYLLPALSRFVSIGLYMPATGFLLLVLGLKALELWM----QLHQAGVNPEEAGKA- 409
Query: 494 KWLDAAKQVFTLHLLGFIVTLLPYFICQ----------VPGQHSPTNRSIMWGTTSSSLL 543
+ +G P I Q V GQH T + + L
Sbjct: 410 --PSPGTPLLPTQGVGLASLTAPLLISQAMGLALYFLPVLGQHLATQHFPVAEAEAVVLT 467
Query: 544 LITFVTMPGCSP------FSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALL 597
L+ P +S++ W LK V + + L ++++NF+ + A
Sbjct: 468 LLAIYVAGLALPHNTHRVVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLLAAT 527
Query: 598 LVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGL-VGLSLG 656
+VP +A+P P ++L A LL + P + S L E L V LSL
Sbjct: 528 MVPAAALAKPHGP-------RTLYAA-----LLVVTSPAVTLFGSLFLWRELLEVPLSLA 575
Query: 657 GEFWTWLESL-------WAWKSATYLYIGMVHLPCWLLCLCILF 693
+ +L +L + + + + + + PCWLL +LF
Sbjct: 576 EGWQLFLTALAQGVLEHYTYGALLFPILALGLYPCWLLFWNVLF 619
>ref|NP_003792.1| (NM_003801) anchor attachment protein 1; anchor attachment protein
1 (Gaa1p, yeast) homolog; glycophosphatidylinositol
anchor attachment 1 [Homo sapiens]
dbj|BAA24035.1| (AB006969) hGAA1 [Homo sapiens]
dbj|BAA82588.1| (AB002135) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Homo sapiens]
dbj|BAA82590.1| (AB002137) glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
[Homo sapiens]
gb|AAH03171.1|AAH03171 (BC003171) anchor attachment protein 1 (Gaa1p, yeast) homolog [Homo
sapiens]
gb|AAH04129.1|AAH04129 (BC004129) anchor attachment protein 1 (Gaa1p, yeast) homolog [Homo
sapiens]
Length = 621
Score = 624 bits (1592), Expect = e-177
Identities = 181/702 (25%), Positives = 282/702 (39%), Gaps = 113/702 (16%)
Query: 18 SPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSM 77
S ++ R + RL + L A V S V A LA L+ P L + TY+SENA+
Sbjct: 5 SDPVRRRALARLVLRLNAPLCVLSYVAGIAWFLA-LVFPPLTQRTYMSENAMGSTMVEEQ 63
Query: 78 LSNRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVSYQKFH---PEGNQFHPL 134
+ +D R + + M +G EV Q F P ++ H
Sbjct: 64 FAGG--DRARAFARDFAAHRKKSGALPVAWLERTMRSVGLEVYTQSFSRKLPFPDETHER 121
Query: 135 HFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGI 194
+ S G NV GI+RAPR ES+VL P ++G+
Sbjct: 122 YMVS----------------GTNVYGILRAPRAASTESLVLTVPCG---SDSTNSQAVGL 162
Query: 195 VSSLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTAD 254
+ +L + + +KDI++LV + D AWL YH V+ + Q
Sbjct: 163 LLALAAHFRGQIYWAKDIVFLVTEH---DLLGTEAWLEAYH--DVNVTGMQSSPLQG--- 214
Query: 255 NFRRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVK 314
RAG + AA+ L++ S +L + E NGQ+PNLDL+N+
Sbjct: 215 ---RAGAIQAAVALEL---SSDVVTSLDVAVEGLNGQLPNLDLLNL-------------- 254
Query: 315 VEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALG 374
+ F + + L L P+ + L+G TL + QA G
Sbjct: 255 ------------FQTFCQKGGLLCTLQGKLQPEDWTSLDGP--LQGLQTLLLMVLRQASG 300
Query: 375 IPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRG-ARLLEGTIRSVNNLLEKFH 433
P G HG F Y+V+A+TL+ F RQ+ + L + LEG R +N+LLE+ H
Sbjct: 301 RPHGSHGLFLRYRVEALTLRGINSF------RQYKYDLVAVGKALEGMFRKLNHLLERLH 354
Query: 434 QSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKS-----LTNSTHNPTE 488
QSFFLY+L S+F+S+G+YM A L+ L + A L++ ++ P+
Sbjct: 355 QSFFLYLLPGLSRFVSIGLYMPAVGFLLLVLGLKALELWMQLHEAGMGLEEPGGAPGPSV 414
Query: 489 NFKSWKWLDAAKQVFTL---HLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLI 545
+ + A V L +G + +LP V GQH T + + L L+
Sbjct: 415 PLPPSQGVGLASLVAPLLISQAMGLALYVLP-----VLGQHVATQHFPVAEAEAVVLTLL 469
Query: 546 TFVTMPGCSP------FSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLV 599
P S++ W LK V + + L +++ NF+ + A +V
Sbjct: 470 AIYAAGLALPHNTHRVVSTQAPDRGWMALKLVALIYLALQLGCIALTNFSLGFLLATTMV 529
Query: 600 PTCLMAQPIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGL-VGLSLGGE 658
PT +A+P P ++L A LL + P S L E LSL
Sbjct: 530 PTAALAKPHGP-------RTLYAA-----LLVLTSPAATLLGSLFLWRELQEAPLSLAEG 577
Query: 659 FWTWLESL-------WAWKSATYLYIGMVHLPCWLLCLCILF 693
+ +L +L + + + + + PCWLL +LF
Sbjct: 578 WQLFLAALAQGVLEHHTYGALLFPLLSLGLYPCWLLFWNVLF 619
>gb|AAF46094.1| (AE003435) CG3033 gene product [Drosophila melanogaster]
Length = 674
Score = 569 bits (1452), Expect = e-161
Identities = 160/683 (23%), Positives = 271/683 (39%), Gaps = 95/683 (13%)
Query: 38 PVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFR 97
V A L LP TY+SENAL PG + +L+++++ R
Sbjct: 27 CYALYVAGVAWFFC-LALPEFNHGTYLSENALSPGLVYPEIRIDANRLAIQLLEELQRER 85
Query: 98 LNHEG-QVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGV 156
+H I M++ G E + + F G Y +G
Sbjct: 86 KDHLSTTPHAWIAAKMNEFGLETHTHNYTL-------RYPFGGGKEY----------HGK 128
Query: 157 NVAGIIRAPRGDGKESIVLVTPYDFINGGDYE-DLSLGIVSSLFSLLSRVTWLSKDIIWL 215
N+ GI+RAPR E IV PY + + S+ ++ + R + +KD+I+L
Sbjct: 129 NIYGILRAPRIASTEGIVFAAPYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFL 188
Query: 216 VADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSE 275
+ + + AWL YH ++ DL K + RAG++ AAL ++V +
Sbjct: 189 ITEQE---QLGMQAWLEAYHDGDREL-DLSKA-YLRPGNLPARAGSLQAALNIEV----Q 239
Query: 276 KFE-DTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIF 334
E D + + E NG++PNLD+ N+V + + I
Sbjct: 240 DLEIDHVDVRIEGLNGKLPNLDMFNLVQRIM-------------------AREGIASGYK 280
Query: 335 EAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLK 394
+A K + + + + + L SQ+ G+PTG HG F Y++DA+T+
Sbjct: 281 QAPRKKRRHS---------QSHFEQNFRQMLTMLASQSSGVPTGNHGLFHRYRIDALTIA 331
Query: 395 VSPRFPPDS-KTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVY 453
+ R + K + + +EG RS+NNLLE+FHQSFF Y++ S ++IS+G Y
Sbjct: 332 ANRRATHATLKGSPGSAAVPLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDY 391
Query: 454 MIAFALLVA-----------PLPMVAASL-----YIDGCKSLTNSTHNPTENFKSWKWLD 497
M A LVA LP A L ++ + N + +
Sbjct: 392 MPALVALVACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYGS 451
Query: 498 AAKQVFTLHLLGFIVTLLPY--FICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSP 555
+ L+GF+ +LP + ++P +P S++ S L LI FV P
Sbjct: 452 VLIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVL-----SFLSLIGFV-----LP 501
Query: 556 FSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSR 615
F L +L + L ++ ++NFA A+L VP + + + RS
Sbjct: 502 FVVVLPPGGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVIALETKEENSRST 561
Query: 616 RLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLV-GLSLGGEFWTWLESLWA------ 668
++ A + + + + V+ A++ E V + L S +
Sbjct: 562 LRNTIRLATLVMNPMMVVY-VIVLAMTFYQFPELPVQKIMLRAATAAMDASAYGLIDSVI 620
Query: 669 WKSATYLYIGMVHLPCWLLCLCI 691
+ + Y I + LP W++C +
Sbjct: 621 YGNWLYFVICTIFLPLWIICWTL 643
>ref|NP_572273.1| (NM_132045) CG3033 gene product [Drosophila melanogaster]
gb|AAK77275.1| (AY047543) GH05723p [Drosophila melanogaster]
Length = 561
Score = 557 bits (1421), Expect = e-157
Identities = 146/600 (24%), Positives = 241/600 (39%), Gaps = 87/600 (14%)
Query: 38 PVFSVVFSAAGVLALLLLPLLAKNTYISENALMPGSARSMLSNRDVSDGSKLVKDIKNFR 97
V A L LP TY+SENAL PG + +L+++++ R
Sbjct: 27 CYALYVAGVAWFFC-LALPEFNHGTYLSENALSPGLVYPEIRIDANRLAIQLLEELQRER 85
Query: 98 LNHEG-QVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSGPDSYTLLENVSCASYGV 156
+H I M++ G E + + F G Y +G
Sbjct: 86 KDHLSTTPHAWIAAKMNEFGLETHTHNYTL-------RYPFGGGKEY----------HGK 128
Query: 157 NVAGIIRAPRGDGKESIVLVTPYDFINGGDYE-DLSLGIVSSLFSLLSRVTWLSKDIIWL 215
N+ GI+RAPR E IV PY + + S+ ++ + R + +KD+I+L
Sbjct: 129 NIYGILRAPRIASTEGIVFAAPYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFL 188
Query: 216 VADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRSE 275
+ + + AWL YH ++ DL K + RAG++ AAL ++V +
Sbjct: 189 ITEQE---QLGMQAWLEAYHDGDREL-DLSKA-YLRPGNLPARAGSLQAALNIEV----Q 239
Query: 276 KFE-DTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIF 334
E D + + E NG++PNLD+ N+V + + I
Sbjct: 240 DLEIDHVDVRIEGLNGKLPNLDMFNLVQRIM-------------------AREGIASGYK 280
Query: 335 EAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLK 394
+A K + + + + + L SQ+ G+PTG HG F Y++DA+T+
Sbjct: 281 QAPRKKRRHS---------QSHFEQNFRQMLTMLASQSSGVPTGNHGLFHRYRIDALTIA 331
Query: 395 VSPRFPPDS-KTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVY 453
+ R + K + + +EG RS+NNLLE+FHQSFF Y++ S ++IS+G Y
Sbjct: 332 ANRRATHATLKGSPGSAAVPLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDY 391
Query: 454 MIAFALLVA-----------PLPMVAASL-----YIDGCKSLTNSTHNPTENFKSWKWLD 497
M A LVA LP A L ++ + N + +
Sbjct: 392 MPALVALVACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYGS 451
Query: 498 AAKQVFTLHLLGFIVTLLPY--FICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSP 555
+ L+GF+ +LP + ++P +P S++ S L LI FV P
Sbjct: 452 VLIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVL-----SFLSLIGFV-----LP 501
Query: 556 FSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSR 615
F L +L + L ++ ++NFA A+L VP + + + +R
Sbjct: 502 FVVVLPPGGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVIALETKEENSAAR 561
>pir||T46923 hypothetical protein DKFZp434E1512.1 - human
emb|CAB75660.1| (AL157437) hypothetical protein [Homo sapiens]
gb|AAH06383.1|AAH06383 (BC006383) Unknown (protein for MGC:12663) [Homo sapiens]
Length = 499
Score = 496 bits (1265), Expect = e-139
Identities = 149/562 (26%), Positives = 234/562 (41%), Gaps = 91/562 (16%)
Query: 155 GVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVSSLFSLLSRVTWLSKDIIW 214
G NV GI+RAPR ES+VL P ++G++ +L + + +KDI++
Sbjct: 4 GTNVYGILRAPRAASTESLVLTVPCG---SDSTNSQAVGLLLALAAHFRGQIYWAKDIVF 60
Query: 215 LVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRAGTMAAALVLKVDGRS 274
LV + D AWL YH V+ + Q RAG + AA+ L++ S
Sbjct: 61 LVTEH---DLLGTEAWLEAYH--DVNVTGMQSSPLQG------RAGAIQAAVALEL---S 106
Query: 275 EKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIF 334
+L + E NGQ+PNLDL+N+ + F +
Sbjct: 107 SDVVTSLDVAVEGLNGQLPNLDLLNL--------------------------FQTFCQKG 140
Query: 335 EAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGPHGAFRDYQVDAITLK 394
+ L L P+ + L+G TL + QA G P G HG F Y+V+A+TL+
Sbjct: 141 GLLCTLQGKLQPEDWTSLDGP--LQGLQTLLLMVLRQASGRPHGSHGLFLRYRVEALTLR 198
Query: 395 VSPRFPPDSKTRQHDFFLRG-ARLLEGTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVY 453
F RQ+ + L + LEG R +N+LLE+ HQSFFLY+L S+F+S+G+Y
Sbjct: 199 GINSF------RQYKYDLVAVGKALEGMFRKLNHLLERLHQSFFLYLLPGLSRFVSIGLY 252
Query: 454 MIAFALLVAPLPMVAASLYIDGCKS-----LTNSTHNPTENFKSWKWLDAAKQVFTL--- 505
M A L+ L + A L++ ++ P+ + + A V L
Sbjct: 253 MPAVGFLLLVLGLKALELWMQLHEAGMGLEEPGGAPGPSVPLPPSQGVGLASLVAPLLIS 312
Query: 506 HLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSP------FSSR 559
+G + +LP V GQH T + + L L+ P S++
Sbjct: 313 QAMGLALYVLP-----VLGQHVATQHFPVAEAEAVVLTLLAIYAAGLALPHNTHRVVSTQ 367
Query: 560 LHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQPIKPALRSRRLKS 619
W LK V + + L +++ NF+ + A +VPT +A+P P ++
Sbjct: 368 APDRGWMALKLVALIYLALQLGCIALTNFSLGFLLATTMVPTAALAKPHGP-------RT 420
Query: 620 LLGAFCSIVLLTIGFPVMFFAISKGLLGEGL-VGLSLGGEFWTWLESL-------WAWKS 671
L A LL + P S L E LSL + +L +L + +
Sbjct: 421 LYAA-----LLVLTSPAATLLGSLFLWRELQEAPLSLAEGWQLFLAALAQGVLEHHTYGA 475
Query: 672 ATYLYIGMVHLPCWLLCLCILF 693
+ + + PCWLL +LF
Sbjct: 476 LLFPLLSLGLYPCWLLFWNVLF 497
>ref|NP_491700.1| (NM_059299) F33D11.9b.p [Caenorhabditis elegans]
gb|AAK68360.1|AF039720_13 (AF039720) Hypothetical protein F33D11.9b [Caenorhabditis elegans]
Length = 670
Score = 418 bits (1063), Expect = e-115
Identities = 137/657 (20%), Positives = 239/657 (35%), Gaps = 132/657 (20%)
Query: 11 EVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALM 70
E+ D G+ I+ + + + + + A L P+ + T ISE++LM
Sbjct: 20 EISKDGGT---TRPKILDKILKFRKVALIIAYI-GAYLSAQWLFDPVNMEVTRISEHSLM 75
Query: 71 PGSARSMLSNRDVSDGSKLVKDIKNFR-LNHEGQVQKLIGKYMSDMGAEVSYQKFHPEGN 129
PG ++ ++ + F L Q+LI SD+G E K+ +
Sbjct: 76 PGLVTPKFDKSGIA-----IQLYRRFSDLPKSKSQQELIHTIFSDLGLECFTHKWRSKV- 129
Query: 130 QFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYED 189
+P++ G NV G IR PR DG E+ ++V G E
Sbjct: 130 AGNPMN-------------------GENVYGFIRGPRNDGAEAQMIVV-----QLGRSEK 165
Query: 190 LSLGIVSSLFSLL----SRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLL 245
S ++S + + + +V W +I V D AA+ + ++ + L
Sbjct: 166 -SRRMMSRMLAFVDYAKDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEAL 224
Query: 246 KCDEQNT--ADNFR-RAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVN 302
+ T AD + + G + +V + G + K + ++I NGQ NLD+ N +
Sbjct: 225 NSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGIT 284
Query: 303 YLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSA 362
+A + S + IF G L NP Y+E S
Sbjct: 285 KIADSKH--------------HSRVAIF-------GTLHRHSNP----------YMEYSP 313
Query: 363 TLA--SSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLR-GARLLE 419
+ +LY+QA G H Y V +T+ +S HD+ + + +E
Sbjct: 314 FIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLS-----------HDYSEKQTGQFIE 362
Query: 420 GTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSL 479
R +NN+LE+ HQS+F+Y+L F S+ +Y+I +LV+PL + A +
Sbjct: 363 EVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEW------- 415
Query: 480 TNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPT---------- 529
+ +++ H+LGF + ++ Q G
Sbjct: 416 --------TKIQEFQFPVVH---LAFHVLGFFYYIATTYVFQTIGTTFVLQWMQWPFVGI 464
Query: 530 -----NRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMS 584
+ W +S L+ F +P + ++ V + + L +
Sbjct: 465 DGCDGQFTPSWSLINSFLI---FFMIPLGPYVFLKEPVRCVPSMRIVCLLETSLVLYGIC 521
Query: 585 IINFATAEIGALLLVPTCLMAQPIKPALRSRRLKSLLGAFCSIVLL---TIGFPVMF 638
+ NF A + +VP + RS S+L I +L I P MF
Sbjct: 522 LTNFGLAILCTAFVVPIVFLMTT-----RSIFRSSVLAILNPISVLAFVAINIPGMF 573
>pir||T32771 hypothetical protein F33D11.9b - Caenorhabditis elegans
Length = 885
Score = 407 bits (1036), Expect = e-112
Identities = 115/525 (21%), Positives = 201/525 (37%), Gaps = 106/525 (20%)
Query: 11 EVKTDDGSPKIKPRPIVRLGIFLIAHSPVFSVVFSAAGVLALLLLPLLAKNTYISENALM 70
E+ D G+ I+ + + + + + A L P+ + T ISE++LM
Sbjct: 282 EISKDGGT---TRPKILDKILKFRKVALIIAYI-GAYLSAQWLFDPVNMEVTRISEHSLM 337
Query: 71 PGSARSMLSNRDVSDGSKLVKDIKNFR-LNHEGQVQKLIGKYMSDMGAEVSYQKFHPEGN 129
PG ++ ++ + F L Q+LI SD+G E K+ +
Sbjct: 338 PGLVTPKFDKSGIA-----IQLYRRFSDLPKSKSQQELIHTIFSDLGLECFTHKWRSKV- 391
Query: 130 QFHPLHFFSGPDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYED 189
+P++ G NV G IR PR DG E+ ++V G E
Sbjct: 392 AGNPMN-------------------GENVYGFIRGPRNDGAEAQMIVV-----QLGRSEK 427
Query: 190 LSLGIVSSLFSLL----SRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLL 245
S ++S + + + +V W +I V D AA+ + ++ + L
Sbjct: 428 -SRRMMSRMLAFVDYAKDQVYWARDIVIVFVDGGEKNDSIEKAAFALDAFLLKYQKIEAL 486
Query: 246 KCDEQNT--ADNFR-RAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVN 302
+ T AD + + G + +V + G + K + ++I NGQ NLD+ N +
Sbjct: 487 NSKKSITVEADEIQAQTGALIGGVVYDLSGMAVKGQHIVNIQTNGLNGQQVNLDVFNGIT 546
Query: 303 YLAVHRQGFYVKVEKVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSA 362
+A + S + IF G L NP Y+E S
Sbjct: 547 KIADSKH--------------HSRVAIF-------GTLHRHSNP----------YMEYSP 575
Query: 363 TLA--SSLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLR-GARLLE 419
+ +LY+QA G H Y V +T+ +S HD+ + + +E
Sbjct: 576 FIVPMRALYTQAFISIEGIHSVLGKYGVQGLTVGLS-----------HDYSEKQTGQFIE 624
Query: 420 GTIRSVNNLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSL 479
R +NN+LE+ HQS+F+Y+L F S+ +Y+I +LV+PL + A +
Sbjct: 625 EVSRMLNNVLERLHQSYFMYVLADDLHFSSIAMYIIPLTILVSPLVISAYFEW------- 677
Query: 480 TNSTHNPTENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPG 524
+ +++ H+LGF + ++ Q G
Sbjct: 678 --------TKIQEFQFPVVH---LAFHVLGFFYYIATTYVFQTIG 711
>emb|CAB65611.1| (AL136078) putative glycosylphosphatidylinositol anchor attachment
protein [Schizosaccharomyces pombe]
Length = 581
Score = 407 bits (1035), Expect = e-112
Identities = 148/675 (21%), Positives = 259/675 (37%), Gaps = 150/675 (22%)
Query: 27 VRLGIFLIAHSPVFSVVFSAAGVLALLLLP--LLAKNTYISENALMPGSARSMLSNRDVS 84
+R+ FL H + + G+ + +LP + ++SE+AL+PG + NR
Sbjct: 9 IRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFENRYSK 68
Query: 85 DGSKLVKDIKNFR-LNHEGQVQKL---IGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSGP 140
S + + L+ + + + + MG Q +
Sbjct: 69 TVSSSLTAANTWSHLDASVGTNTMYDDLEQIFTAMGLPTQKQNYS--------------- 113
Query: 141 DSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPY-DFINGGDYEDLSLGIVSSLF 199
+ G N +RAPRGD ES++L P+ D I G Y + + + SL
Sbjct: 114 -----INIPGSEFNGSNFITTLRAPRGDATESLLLCVPWKDHI--GQYNEAGVALAISLL 166
Query: 200 SLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYH---SPSFKVSDLLKCDEQNTADNF 256
+ SKDII ++ D +++LT Y +P + L
Sbjct: 167 KYFQGWSLWSKDIILVIFDDPVY---GPSSFLTSYFDQTTPYISYTPLKI---------- 213
Query: 257 RRAGTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVE 316
R+G++ A L L++ +E D L + +A+NGQ+PNLDL N ++ + + + ++++
Sbjct: 214 -RSGSIQAGLSLEL-VTTENNSDVLEVLYQATNGQLPNLDLFNTISRIFMQHFNYPLRLQ 271
Query: 317 ----------KVVSLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLAS 366
S L S W+ + + V AH L P
Sbjct: 272 GYDFHANSGSSYTSRLKSLWMGMLTQAVSNVTS-AHALFPQ------------------- 311
Query: 367 SLYSQALGIPTGPHGAFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEGTIRSVN 426
Y++D +TL++ + P D F R + +E T RS+N
Sbjct: 312 -------------------YRIDMLTLRMKVKDP-----FSFDMF-RFGQAIESTFRSLN 346
Query: 427 NLLEKFHQSFFLYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLTNSTHNP 486
NLLE HQSFF Y + FIS+G YM + +L A + A +I N
Sbjct: 347 NLLEHLHQSFFFYFILDHLHFISIGNYMPSILILAASFMLGAYRHWI-----------NH 395
Query: 487 TENFKSWKWLDAAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLIT 546
+ W+ F+ L T+ Y++ S T ++ L++T
Sbjct: 396 EKKIDLWR-------PFSFWLFSIFCTIAAYYLVS-----SSTKITVFIFL----YLMLT 439
Query: 547 FVTMPGCSPFSSRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTCLMAQ 606
F+ + FS+ + + ++ S + + + + ++S +NF+ + + A+LLVP +
Sbjct: 440 FIGI----IFSTFMTSEDAELVLSYDLMSKSLFISVVSTLNFSLSFVVAILLVPLQFI-- 493
Query: 607 PIKPALRSRRLKSLLGAFCSIVLLTIGFPVMFFAISKGLLGEGLVGLSLGGEFWTWLESL 666
+ R R SLL A +LT +F +L LV FW W +
Sbjct: 494 ----SFRFNRRLSLLFA-----VLTYFSTFIFLCSLSKILNGPLVP------FWLWAKEY 538
Query: 667 WAWKSATYLYIGMVH 681
+ S + M+
Sbjct: 539 ELFNSWLMPSVFMIL 553
>ref|NP_013189.1| (NC_001144) ER protein essential for attaching GPI
(glycosylphosphatidylinositol) to protein; Gaa1p
[Saccharomyces cerevisiae]
sp|P39012|GAA1_YEAST GAA1 PROTEIN
pir||S45053 membrane protein END2 - yeast (Saccharomyces cerevisiae)
emb|CAA55944.1| (X79409) Gaa1 [Saccharomyces cerevisiae]
gb|AAB67592.1| (U53880) Gaa1p [Saccharomyces cerevisiae]
emb|CAA97649.1| (Z73260) ORF YLR088w [Saccharomyces cerevisiae]
Length = 614
Score = 381 bits (970), Expect = e-104
Identities = 162/718 (22%), Positives = 273/718 (37%), Gaps = 174/718 (24%)
Query: 24 RPIVRLGI--FLIAHSPVFSVVFSAAGVLALLLLPLLAK--NTYISENALMPGSARSMLS 79
R IV +G+ +IA PV S++ + G +++ +LP+ + TYISENALMP A S
Sbjct: 9 RRIVDMGLVPRIIALLPVISMLCALFGFISIAILPMDGQYRRTYISENALMPSQAYSYFR 68
Query: 80 NRDVSDGSKLVKDIKNFRLNHEGQVQKLIGKYMSDMGAEVSYQKFHPEGNQFHPLHFFSG 139
+ + IK + L+G ++ + G + +
Sbjct: 69 ESEWNILRGYRSQIKEMVNMTSMERNNLMGSWLQEFGTKTA------------------- 109
Query: 140 PDSYTLLENVSCASYGVNVAGIIRAPRGDGKESIVLVTPYDFINGGDYEDLSLGIVSSLF 199
+ EN YG + G++ APRGDG E++VL P+ F + ++ + SL
Sbjct: 110 -----IYEN---EQYGETLYGVMHAPRGDGTEAMVLAVPW-FNSDDEFNIGGAALGVSLA 160
Query: 200 SLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCDEQNTADNFRRA 259
SR SK+II + +++ R +W+ YH+ S ++
Sbjct: 161 RFFSRWPVWSKNIIVVFSENPRAALR---SWVEAYHT-SLDLTG---------------- 200
Query: 260 GTMAAALVLKVDGRSEKFEDTLSIYAEASNGQMPNLDLINVVNYLAVHRQGFYVKVEKVV 319
G++ AA+VL +E F + + I + NG++PNLDL+N+ + H G V + +
Sbjct: 201 GSIEAAVVLDYSS-TEDFFEYVEISYDGLNGELPNLDLVNIAISITEHE-GMKVSLHGLP 258
Query: 320 SLLSSSWLKIFGEIFEAVGKLAHMLNPDWNFGIPAADYLEGSATLASSLYSQALGIPTGP 379
S + ++ L + AL P
Sbjct: 259 S-----------------------------DQLTNNNFWSRLKILCLGIRDWALSGVKKP 289
Query: 380 HG--AFRDYQVDAITLKVSPRFPPDSKTRQHDFFLRGARLLEGTIRSVNNLLEKFHQSFF 437
HG AF +++ ++TLK HD R+ E RS+NNLLEKFHQSFF
Sbjct: 290 HGNEAFSGWRIQSVTLKA-------HGNSGHDITTF-GRIPEAMFRSINNLLEKFHQSFF 341
Query: 438 LYMLTSPSKFISVGVYMIAFALLVAPLPMVAASLYIDGCKSLTNSTHNPTENFKSWKWLD 497
Y+L +P +F+S+ Y+ + L + + + +I+ + +
Sbjct: 342 FYLLLAPRQFVSISSYLPSAVALSIAFAISSLNAFINNAYANISL--------------- 386
Query: 498 AAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFS 557
++ L+ F+ ++ + + Q + + S L LI + P S
Sbjct: 387 FSEYNLVALLVWFVSLVISFVVSQAFLLIPSSGLLMTISMASCFLPLILSRKIHISEPLS 446
Query: 558 SRLHGTNWAILKSVTISAAFIGLCLMSIINFATAEIGALLLVPTC--------------- 602
R LK+V + + +INFA A + L P
Sbjct: 447 YR--------LKNVAFLYFSLVSTSLLMINFAMALLIGTLAFPMTFVKTIVESSSEHEVT 498
Query: 603 ------LMAQPIK---------------PALRSRRLKSLLGAFCSIVLLTIGFPVMFFAI 641
+ +P P + ++LK+L VLL + P F +I
Sbjct: 499 TQSSNPIKTEPKDEIELVENHMDTTPATPQQQKQKLKNL-------VLLILTNP--FISI 549
Query: 642 SKGLLGEGLVGLSLGGEFWTW-----LESLWA-WKSATYLYIGMVHLPCWLLCLCILF 693
+ GL EF + L S W K ++ + + LPCWLL L F
Sbjct: 550 TLF-------GLFFDDEFHGFDIINKLVSAWLDLKCWSWFVLCIGWLPCWLLILASSF 600
>gb|AAH08920.1|AAH08920 (BC008920) Unknown (protein for IMAGE:3633567) [Homo sapiens]
Length = 353
Score = 36.3 bits (83), Expect = 1.6
Identities = 11/63 (17%), Positives = 26/63 (40%), Gaps = 6/63 (9%)
Query: 176 VTPYDFINGGDYEDLSLGIVSSLFSLLSRVT-----WLSKDIIWLVADSRYGDYRPVAAW 230
V P+ + G D + ++ L L SR+ + ++++ + +Y+ W
Sbjct: 20 VAPWLSL-GADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRW 78
Query: 231 LTE 233
L +
Sbjct: 79 LED 81
>ref|NP_391526.1| (NC_000964) similar to antibiotic resistance protein [Bacillus
subtilis]
pir||B70065 antibiotic resistance protein homolog ywoG - Bacillus subtilis
emb|CAB05383.1| (Z82987) unknown similar to quinolon resistance protein NorA
[Bacillus subtilis]
emb|CAB15662.1| (Z99122) similar to antibiotic resistance protein [Bacillus
subtilis]
Length = 396
Score = 35.1 bits (80), Expect = 3.5
Identities = 40/173 (23%), Positives = 59/173 (33%), Gaps = 26/173 (15%)
Query: 498 AAKQVFTLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFS 557
+F +T+LP + Q G G S LL +T P
Sbjct: 16 LLVNLFVFVFFYTFLTVLPIYTLQELGGTESQ-----GGLLISLFLLSAIITRPFSGAIV 70
Query: 558 SRLHGTNWAILKSVTISAAFIGLCLMSIINFAT--------AEIGALLLVPTCLMAQPIK 609
R G + S+ + A L M I NF+ ++L T +A I
Sbjct: 71 ERF-GKKRMAIVSMALFALSSFL-YMPIHNFSLLLGLRFFQGIWFSILTTVTGAIAADII 128
Query: 610 PALR----------SRRLKSLLGAFCSIVLL-TIGFPVMFFAISKGLLGEGLV 651
PA R S L +G F + L+ + FPV F A + ++ LV
Sbjct: 129 PAKRRGEGLGYFAMSMNLAMAIGPFLGLNLMRVVSFPVFFTAFALFMVAGLLV 181
CPU time: 116.02 user secs. 2.29 sys. secs 118.31 total secs.
Database: nr
Posted date: Apr 21, 2002 2:19 PM
Number of letters in database: 277,845,442
Number of sequences in database: 887,402
Lambda K H
0.313 0.153 0.430
Gapped
Lambda K H
0.270 0.0536 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294867906
Number of Sequences: 887402
Number of extensions: 9639190
Number of successful extensions: 41860
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 41711
Number of HSP's gapped (non-prelim): 138
length of query: 696
length of database: 277,845,442
effective HSP length: 56
effective length of query: 640
effective length of database: 228,150,930
effective search space: 146016595200
effective search space used: 146016595200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.2 bits)
S2: 76 (33.8 bits)
