IMP GPI Biosynthesis Report IMP-Bioinformatics
GPI Biosynthesis Main Page  
GPI Site Motif   GPI Site Prediction   Home Page B.E.  

GPI Anchor Biosynthesis Report: BAC01259.1 (GAA1 family, Oryza sativa (japonica cultivar-group))



Sequence Analysis
name from to source/E description
TM 1 28 48 toppred2=2.147  
TM 2 463 483 toppred2=1.990  
LCR 469 483 SEG 12 2.2 2.5  
Cluster 487 519 SAPS Mixed charge cluster
TM 3 519 539 toppred2=1.627  
TM 4 549 569 toppred2=2.278  
TM 5 583 603 toppred2=1.919  
TM 6 635 655 toppred2=1.662  
TM 7 685 705 toppred2=1.703  


Sequence Information
protein BAC01259.1
Analysis
  • BlastP against nr

  • Output Created by a Suite of Single Sequence Analysis Techniques
    • Protein Description
    SEQ.SOURCE: gi|21644703|gb|BAC01259.1|BAC01259 agCP7251 putative GPAA1 - like protein [Oryza sativa (japonica cultivar-group)].
    Protein Sequence 
    MASSAKEEAK PKPRLIVRLG VFLASHHILF SAVCCTAGII ALLFLPSLAK NTYLSENALI
PGSANTLFST EDVQEANRFA KGIEAAIGES RGGTTEIPKF IAQQTKNLGA EVYYHEFLPD
SKCFHPLKFF TSMTNNMAAK PNGTYTNFGI NTVGIIRAPR GDGKEAIVLV TPYNSQKVTP
NELLSLALGF SVFSLLSRAA WLSKDIVWLS ADSQFGEYSA VSSWLNQYHN PMFLSHPVNL
DTKIYGANQI LYKPDGTAEK AELMAFKRAG TMAAALIFKV GETRKYGDRD SVTMYAEASN
GQMPNLDLLN VVHYLAVHRQ GFRVNVETFN SLLSSSWLRV IAEVFQNLGS LLRKINPDWK
LDVTVPDYVE GTANLASSMY NQALGVPTGS HGAFRDYQVD AVSLEFAPAF HLKNENAKSS
FLLRGGRLTE GVVRSVNNLL EKFHQSFFLY FLTAPSKFIS VGVYMIPFAL LLAPLPIVAA
ALAGGSKTKG KLEDECKTKG NADDLQMEGG SWKWLKSARV LLIIQFWAVL VSLLPYYISQ
IPGAMPIQYA VIWAVLSITI LIILYAMFGS PSRAGVEWKL LKATMITSIT IGMGLMSIIN
FATAQLGALI LIPMCLFSRP LRAQLEMNFL PRTVLLASNI LLTVLGFPPA AFLIMKGLSK
GSWTVDIVGD FWLWMEFLWE WSSATYLYVF LVHLPCWLLC IHVLLHPCYQ PESKMKQE


    Author: Birgit.Eisenhaber@nt.imp.univie.ac.at on internet.
    Last modified: 28th January 2003