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TEM domain structure |
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TEM Sequence Analysis |
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name | from | to | source/E | description |
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unknown | 1 | 78 | ||
10 | 26 | SEG25 | LCR(SR) | |
VWA | 78 | 249 | Pfam, E=2.3e-07 | Impala - Y. Wolf SCOP: Integrin A (or I) domain: E=9e-13 coil 124-148 The extracellular matrix is the predominant site of expression of type A modules. The proteins that incorporate type A modules participate in numerous biological events such as cell adhesion, migration, homing, pattern formation, and signal transduction after interaction with a large array of ligands. The VWA domains have been shown to bind a variety of ligands, including collagen, laminin, and the glycosaminoglycans heparin and hyaluronan. |
unknown | 249 | 598 | The region is LCR rich with a high proline content. The region might be an artificial translate as it is not confirmed by homologies. | |
332 | 352 | apolar, toppred2 (1.038) | ||
TM | 356 | 376 | toppred2 = 2.6 | If the sequence extending outside of the VWA domain is real, this region would be a transmembrane region. No homologues are found in this segment making the analysis unreliable. |
386 | 410 | SEG25 | LCR(PE) | |
538 | 598 | SEG25 | LCR(P) | |
598 |
Remarks |
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Sequence Information |
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TEM | TEM19 | ||||||||
Reliability of Gen2Tag mapping |
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Analysis |
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Protein Description | hypothetical, deduced from cDNA | ||||||||
Protein Sequence |
RTREEGPADGASLRVVASSRSVGRSGPCSPRAAGHGHGGAESPRHRLPVALTATLVLIC AGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIV FSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTAS VIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVN DGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVDRVLCSFKI NDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDGLSFISSSVIITTTHCSDG SILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAEESEEEDDDGLPKKKWPTVD ASYYGGRGVGGIKRMEVRWGEKGSTEEGAKLEKAKNARVKMPEQEYEFPEPRNLNNNMR RPSSPRKWYSPIKGKLDALWVLLRKGYDRVSVMRPQPGDTGRCINFTRVKNNQPAKYPL NNAYHTSSPPPAPIYTPPPPAPHCPPPPPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPS RPPPRPSV |
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SAGE-Tag | CATG-CTATAGGAGACC | ||||||||
EST/cluster Description |
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EST/cluster Sequence |
AATTGCTTCCGGGGAGTTGCGAGGGAGCGAGGGGGAATAAAGGACCCGCGAGGAAGGGCCCG CGGATGGCGCGTCCCTGAGGGTCGTGGCGAGTTCGCGGAGCGTGGGAAGGAGCGGACCCTGC TCTCCCCGGGCTGCGGGCCATGGCCACGGCGGAGCGGAGAGCCCTCGGCATCGGCTTCCAGT GGCTCTCACGGCCACTCTGGTGCTCATCTGCGCCGGGCAAGGGGGACGCAGGGAGGATGGGG GTCCAGCCTGCTACGGCGGATTTGACCTGTACTTCATTTTGGACAAATCAGGAAGTGTGCTG CACCACTGGAATGAAATCTATTACTTTGTGGAACAGTTGGCTCACAAATTCATCAGCCCACA GTTGAGAATGTCCTTTATTGTTTTCTCCACCCGAGGAACAACCTTAATGAAACTGACAGAAG ACAGAGAACAAATCCGTCAAGGCCTAGAAGAACTCCAGAAAGTTCTGCCAGGAGGAGACACT TACATGCATGAAGGATTTGAAAGGGCCAGTGAGCAGATTTATTATGAAAACAGACAAGGGTA CAGGACAGCTAGCGTCATCATTGCTTTGACTGATGGAGAACTCCATGAAGATCTCTTTTTCT ATTCAGAGAGGGAGGCTAATAGGTCTCGAGATCTTGGTGCAATTGTTTACTGTGTTGGTGTG AAAGATTTCAATGAGACACAGCTGGCCCGGATTGCGGACAGTAAGGATCATGTGTTTCCCGT GAATGACGGCTTTCAGGCTCTGCAAGGCATCATCCACTCAATTTTGAAGAAGTCCTGCATCG AAATTCTAGCAGCTGAACCATCCACCATATGTGCAGGAGAGTCATTTCAAGTTGTCGTGAGA GGAAACGGCTTCCGACATGCCCGCAACGTGGACAGGGTCCTCTGCAGCTTCAAGATCAATGA CTCGGTCACACTCAATGAGAAGCCCTTTTCTGTGGAAGATACTTATTTACTGTGTCCAGCGC CTATCTTAAAAGAAGTTGGCATGAAAGCTGCACTCCAGGTCAGCATGAACGATGGCCTCTCT TTTATCTCCAGTTCTGTCATCATCACCACCACACACTGTTCTGACGGTTCCATCCTGGCCAT CGCCCTGCTGATCCTGTTCCTGCTCCTAGCCCTGGCTCTCCTCTGGTGGTTCTGGCCCCTCT GCTGCACTGTGATTATCAAGGAGGTCCCTCCACCCCCTGCCGAGGAGAGTGAGGAAGAAGAT GATGATGGTCTGCCTAAGAAAAAGTGGCCAACGGTAGACGCCTCTTATTATGGTGGGAGAGG CGTTGGAGGCATTAAAAGAATGGAGGTTCGTTGGGGAGAAAAGGGCTCCACAGAAGAAGGTG CTAAGTTGGAAAAGGCAAAGAATGCAAGAGTCAAGATGCCGGAGCAGGAATATGAATTCCCT GAGCCGCGAAATCTCAACAACAATATGCGTCGGCCTTCTTCCCCCCGGAAGTGGTACTCTCC AATCAAGGGAAAACTCGATGCCTTGTGGGTCCTACTGAGGAAAGGATATGATCGTGTGTCTG TGATGCGTCCACAGCCAGGAGACACGGGGCGCTGCATCAACTTCACCAGGGTCAAGAACAAC CAGCCAGCCAAGTATCCACTCAACAACGCCTACCACACCTCCTCGCCGCCTCCTGCCCCCAT CTACACTCCCCCACCTCCTGCGCCCCACTGCCCTCCCCCGCCCCCCAGCGCCCCTACCCCTC CCATCCCGTCCCCACCTTCCACCCTTCCCCCTCCTCCCCAGGCTCCACCTCCCAACAGGGCA CCTCCTCCCTCCCGCCCTCCTCCAAGGCCTTCTGTCTAGAGCCCAAAGTTCCTGCTCTGGGC TCTCTCAGAAACTTCAGGAGATGTTAGAACAAGTCTTTCCAGTTAGAGAAGAGGAGTGGTGA TAAAGCCCACTGACCTTCACACATTCTAAAAATTGGTTGGCAATGCCAGTATACCAACAATC ATGATCAGCTGAAAGAAACAGATATTTTAAATTGCCAGAAAACAAATGATGAGGCAACTACA GTCAGATTTATAGCCAGCCATCTATCACCTCTAGAAGGTTCCAGAGACAGTGAAACTGCAAG ATGCTCTCAACAGGATTATGTCTCATGGAGACCAGTAAGAAAATCATTTATCTGAAGGTGAA ATGCAGAGTTGGATAAGAAATACATTGCTGGGTTTCTAAAATGCTGCCTTCCTGCCTCTACT CCACCTCCATCCCTGGACTTTGGACCCTTGGCCTAGGAGCCTAAGGACCTTCACCCCTGTGC ACCACCCAAGAAAGAGGAAAACTTTGCCTACAACTTTGGAAATGCTGGGGTCCCTGGTGTGG TAAGAAACTCAACATCAGACGGGTATGCAGAAGGATGTTCTTCTGGGATTTGCAGGTACATA AAAAATGTATGGCATCTTTTCCTTGCAAATTCTTCCAGTTTCCAAGTGAGAAGGGGAGCAGG TGTTTACTGATGGAAAAGGTATGTTGCTATGTTGATGTGTAAGTGAAATCAGTTGTGTGCAA TAGACAGGGGCGTATTCATGGGAGCATCAGCCAGTTTCTAAAACCCACAGGCCATCAGCAGC TAGAGGTGGCTGGCTTTGGCCAGACATGGACCCTAAATCAACAGACAATGGCATTGTCGAAG AGCAACCTGTTAATGAATCATGTTAAAAATCAAGGTTTGGCTTCAGTTTAAATCACTTGAGG TATGAAGTTTATCCTGTTTTCCAGAGATAAACATAAGTTGATCTTCCCAAAATACCATCATT AGGACCTATCACACAATATCACTAGTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTCTTGG TAAAGCCATGCACCACAGACTTCTGGGCAGAGCTGAGAGACAATGGTCCTGACATAATAAGG ATCTTTGATTAACCCCCATAAGGCATGTGTGTGTATACAAATATACTTCTCTTTGGCTTTTC GACATAGAACCTCAGCTGTTAACCAAGGGGAAATACATCAGATCTGCAACACAGAAATGCTC TGCCTGAAATTTCCACCATGCCTAGGACTCACCCCATTTATCCAGGTCTTTCTGGATCTGTT TAATCAATAAGCCCTATAATCACTTGCTAAACACTGGGCTTCATCACCCAGGGATAAAAACA GAGATCATTGTCTTGGACCTCCTGCATCAGCCTATTCAAAATTATCTCTCTCTCTAGCTTTC CACAAATCCTAAAATTCCTGTCCCAAGCCACCCAAATTCTCAGATCTTTTCTGGAACAAGGC AGAATATAAAATAAATATACATTTAGTGGCTTGGGCTATGGTCTCCAAAGATCCTTCAAAAA TACATCAAGCCAGCTTCATTCACTCACTTTACTTAGAACAGAGATATAAGGGCCTGGGATGC ATTTATTTTATCAATACCAATTTTTGTGGCCATGGCAGACATTGCTAATCAATCACAGCACT ATTTCCTATTAAGCCCACTGATTTCTTCACAATCCTTCTCAAATTACAATTCCAAAGAGCCG CCACTCAACAGTCAGATGAACCCAACAGTCAGATGAGAGAAATGAACCCTACTTGCTATCTC TATCTTAGAAAGCAAAAACAAACAGGAGTTTCCAGGGAGAATGGGAAAGCCAGGGGGCATAA AAGGTACAGTCAGGGGAAAATAGATCTAGGCAGAGTGCCTTAGTCAGGGACCACGGGCGCTG AATCTGCAGTGCCAACACCAAACTGACACATCTCCAGGTGTACCTCCAACCCTAGCCTTCTC CCACAGCTGCCTACAACAGAGTCTCCCAGCCTTCTCAGAGAGCTAAAACCAGAAATTTCCAG ACTCATGAAAGCAACCCCCCAGCCTCTCCCCAACCCTGCCGCATTGTCTAATTTTTAGAACA CTAGGCTTCTTCTTTCATGTAGTTCCTCATAAGCAGGGGCCAGAATATCTCAGCCACCTGCA GTGACATTGCTGGACCCCTGAAAACCATTCCATAGGAGAATGGGTTCCCCAGGCTCACAGTG TAGAGACATTGAGCCCATCACAACTGTTTTGACTGCTGGCAGTCTAAAACAGTCCACCCACC CCATGGCACTGCCGCGTGATTCCCGCGGCCATTCAGAAGTTCAAGCCGAGATGCTGACGTTG CTGAGCAACGAGATGGTGAGCATCAGTGCAAATGCACCATTCAGCACATCAGTCATATGCCC AGTGCAGTTACAAGATGTTGTTTCGGCAAAGCATTTTGATGGAATAGGGAACTGCAAATGTA TGATGATTTTGAAAAGGCTCAGCAGGATTTGTTCTTAAACCGACTCAGTGTGTCATCCCCGG TTATTTAGAATTACAGTTAAGAAGGAGAAACTTCTATAAGACTGTATGAACAAGGTGATATC TTCATAGTGGGCTATTACAGGCAGGAAAATGTTTTAACTGGTTTACAAAATCCATCAATACT TGTGTCATTCCCTGTAAAAGGCAGGAGACATGTGATTATGATCAGGAAACTGCACAAAATTA TTGTTTTCAGCCCCCGTGTTATTGTCCTTTTGAACTGTTTTTTTTTTATTAAAGCCAAATTT GTGTTGTATATATTCGTATTCCATGTGTTAGATGGAAGCATTTCCTATCCAGTGTGAATAAA AAGAACAGTTGTAGTAAATTATTATAAAGCCGATGATATTTCATGGCAGGTTATTCTACCAA GCTGTGCTTGTTGGTTTTTCCCATGACTGTATTGCTTTTATAAATGTACAAATAGTTACTGA AATGACGAGACCCTTGTTTGCACAGCATTAATAAGAACCTTGATAAGAACCATATTCTGTTG ACAGCCAGCTCACAGTTTCTTGCCTGAAGCTTGGTGCACCCTCCAGTGAGACACAAGATCTC TCTTTTACCAAAGTTGAGAACAGAGCTGGTGGATTAATTAATAGTCTTCGATATCTGGCCAT GGGTAACCTCATTGTAACTATCATCAGAATGGGCAGAGATGATCTTGAAGTGTCACATACAC TAAAGTCCAAACACTATGTCAGATGGGGGTAAAATCCATTAAAGAACAGGAAAAAATAATTA TAAGATGATAAGCAAATGTTTCAGCCCAATGTCAACCCAGTTAAAAAAAAAATTAATGCTGT GTAAAATGGTTGAATTAGTTTGCAAACTATATAAAGACATATGCAGTAAAAAGTCTGTTAAT GCACATCCTGTGGGAATGGAGTGTTCTAACCAATTGCCTTTTCTTGTTATCTGAGCTCTCCT ATATTATCATACTCAGATAACCAAATTAAAAGAATTAGAATATGATTTTTAATACACTTAAC ATTAAACTCTTCTAACTTTCTTCTTTCTGTGATAATTCAGAAGATAGTTATGGATCTTCAAT GCCTCTGAGTCATTGTTATAAAAAATCAGTTATCACTATACCATGCTATAGGAGACTGGGCA AAACCTGTACAATGACAACCCTGGAAGTTGCTTTTTTTAAAAAAATAATAAATTTCTTAAAT CAAAAAAAAAAAAAAAAAAAA |
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Genomic Sequence Description | |||||||||
Genomic Sequence |
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Literature |
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PubMed:94018965 | Type A modules: interacting domains found in several non-fibrillar collagens and in other extracellular matrix proteins. Colombatti A, Bonaldo P, Doliana R. Matrix 1993 Jul;13(4):297-306. |
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