analysis of sequence from tem5
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
>gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQDDGSDAPPGSPDWA
GDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWA
LVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSL
SPKTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSR
RGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNF
HLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE
PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPP
EAARPADEPTPASKCCSKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSVLCDPSLVDEI
FDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFSKDVLVNIYSAYIDNFLNAKDAVRVAKEARP
AFLKFLEQSMRENKEKQALSDLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINK
GVRSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTDLIVCTTLKRK
SGSLRRSSMSLYTAASVIDTASKYKMLWKLPLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKL
SESLGFPHQSLDDALRDLSAAMHRDLSEKQALCYALSFPPTKLELCATRPEGTDSYIFEFPHPDARLGFE
QAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAAPTLNSCPEPSPEVWVCNSDGYVGQVCLLSL
RAEPDVEACIAVCSARILCIGAVPGLQPRCHREPPPSLRSPPETAPEPAGPELDVEAAADEEAATLAEPG
PQPCLHISIAGSGLEMTPGLGEGDPRPELVPFDSDSDDESSPSPSGTLQSQASRSTISSSFGNEETPSSK
EATAETTSSEEEQEPGFLPLSGSFGPGGPCGTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAYQSSVWL
GTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHFWDPQNFKSVT
LGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHV
CLYHPDTFEQLAEVDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTV
SCPRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLCPTPPPPPDTGPEKLPSLEHRDSPWHRGPAPARPK
MLVISGGDGYEDFRLSSGGGSSSETVGRDDSTNHLLLWRV
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
sec.str. with predator
> gi|2224615|dbj|BAA20795.1|
. . . . .
1 MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQ 50
________________EEEE_____________HHHHHHHHHHHHHHHHH
. . . . .
51 RMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPE 100
HH__________________________HHHHH_________________
. . . . .
101 PPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP 150
__EEEEE_______________________________EEEE________
. . . . .
151 GALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF 200
_HHHHHH_________EEE_______EEEE______HHHHHHHH______
. . . . .
201 SVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSI 250
__________________________________________HHHHHHHH
. . . . .
251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV 300
H_________HHHHH_______________________________EEE_
. . . . .
301 EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNF 350
__________HHHHHHH_________HHHHHHHHHH______________
. . . . .
351 HLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPS 400
______EEE____EEE__________HHHHHHH_________________
. . . . .
401 SRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSL 450
_____________EEEEE_________EEEE___________________
. . . . .
451 EDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPT 500
_HHHHHHHHHH_______________________________________
. . . . .
501 PASKCCSKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV 550
_________HHHHHHHHHHHHH_HHHHHHHHHHHHHHHH_________EE
. . . . .
551 LCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFS 600
E____HHHHHHH_HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE____
. . . . .
601 KDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENKEKQALS 650
__HHHHHHHHH______HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
. . . . .
651 DLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINK 700
HHH___EEE_HHHHHHHHHHHH__________HHHHHHHHHHHHHHHHH_
. . . . .
701 GVRSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGK 750
__HHHHHHHHHHHHHHHHHHHHH___HHHHHHHHHHHHHHHHHHH_____
. . . . .
751 KDRSLFLFTDLIVCTTLKRKSGSLRRSSMSLYTAASVIDTASKYKMLWKL 800
___EEEEE__EEEE____________________EEEEHHHHHHHHHH__
. . . . .
801 PLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKLSESLGFPHQS 850
_____EEEEHHHHHHHHHHHHHHHHHHH______________________
. . . . .
851 LDDALRDLSAAMHRDLSEKQALCYALSFPPTKLELCATRPEGTDSYIFEF 900
HHHHHHHHHHHHHHH_HHHHHHHHH_______EEEEE________EEEE_
. . . . .
901 PHPDARLGFEQAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAA 950
_____HHHHHHHHHHHHHHHHHH________EEEEEEEE_______EEE_
. . . . .
951 PTLNSCPEPSPEVWVCNSDGYVGQVCLLSLRAEPDVEACIAVCSARILCI 1000
____________EEEE____EEEEHHHHHHH_____EEEEHHHHHEEEE_
. . . . .
1001 GAVPGLQPRCHREPPPSLRSPPETAPEPAGPELDVEAAADEEAATLAEPG 1050
________________________________HHHHHHHHHHHHHH____
. . . . .
1051 PQPCLHISIAGSGLEMTPGLGEGDPRPELVPFDSDSDDESSPSPSGTLQS 1100
___EEEEEE___________________EEE___________________
. . . . .
1101 QASRSTISSSFGNEETPSSKEATAETTSSEEEQEPGFLPLSGSFGPGGPC 1150
__________________________________________________
. . . . .
1151 GTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVY 1200
________EEEE__________HHHHH_________EEEEE____EEEEE
. . . . .
1201 QSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHF 1250
E____HHHHHHHHHHHHHH___EEEE____EEEEE____EEEEE______
. . . . .
1251 WDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMF 1300
______EEEE_______EEEEE____EEE____EEEEEE____HHHHHEE
. . . . .
1301 YVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPV 1350
EE______EEEEEE______EEEE___EEEEE____HHHHHHHH______
. . . . .
1351 HRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTV 1400
EEEE_______HHHHHHHHHHHHHHHHHHHHEEE____EEEEE_______
. . . . .
1401 SCPRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLCPTPPPPPDTGPEKL 1450
__________________HHHHHHHH_______EEE______________
. . . . .
1451 PSLEHRDSPWHRGPAPARPKMLVISGGDGYEDFRLSSGGGSSSETVGRDD 1500
____________________EEEE______EEEE________________
.
1501 STNHLLLWRV 1510
_HHHHHH___
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
method : 1
alpha-contents : 37.2 %
beta-contents : 0.0 %
coil-contents : 62.8 %
class : alpha
method : 2
alpha-contents : 10.0 %
beta-contents : 0.0 %
coil-contents : 90.0 %
class : irregular
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
GPI: learning from metazoa
-20.28 -2.95 -1.11 -0.32 -4.00 0.00 0.00 0.00 -1.11 -9.32 -2.76 -12.00 -12.00 -4.00 -12.00 0.00 -81.85
-5.92 -1.83 -1.58 -2.52 0.00 0.00 -16.00 0.00 -0.38 -9.32 -2.76 -12.00 -12.00 -4.00 -12.00 0.00 -80.31
ID: gi|2224615|dbj|BAA20795.1| AC: xxx Len: 1470 1:I 1457 Sc: -80.31 Pv: 7.847467e-01 NO_GPI_SITE
GPI: learning from protozoa
-13.38 -2.06 -1.53 -1.49 -4.00 0.00 -16.00 0.00 -0.05 -7.95 -9.85 -12.00 -12.00 -4.00 -12.00 0.00 -96.31
-25.88 -1.89 -0.85 -1.52 -4.00 0.00 0.00 0.00 -0.36 -8.90 -9.85 -12.00 -12.00 -4.00 -12.00 0.00 -93.25
ID: gi|2224615|dbj|BAA20795.1| AC: xxx Len: 1470 1:I 1452 Sc: -93.25 Pv: 7.551621e-01 NO_GPI_SITE
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
# SignalP euk predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|2224615| 0.539 488 Y 0.497 1388 Y 0.862 1377 N 0.082 N
# SignalP gram- predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|2224615| 0.676 488 Y 0.395 488 Y 0.979 6 Y 0.128 N
# SignalP gram+ predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|2224615| 0.559 488 Y 0.490 488 Y 0.978 7 Y 0.182 N
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
low complexity regions: SEG 12 2.2 2.5
>gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
1-8 MARRLPRT
salksssselll 9-20
21-56 TGPGAEEDPLPLIVQDQYVQEARQVFEKIQ
RMGAQQ
ddgsdappgspd 57-68
69-161 WAGDVTRGQRSQEELSGPESSLTDEGIGAD
PEPPVAAFCGLGTTGMWRPLSSSSAQTNHH
GPGTEDSLGGWALVSPETPPTPGALRRRRK
VPP
sgsggsefsngeage 162-176
177-281 AYRSLSDPIPQRHRAATSEEPTGFSVDSNL
LGSLSPKTGLPATSAMDEGLTSGHSDWSVG
SEESKGYQEVIQSIVQGPGTLGRVVDDRIA
GKAPKKKSLSDPSRR
gelagpgfegpggep 282-296
297-334 IREVEPMLPPSSSEPILVEQRAEPEEPGAT
RSRAQSER
alpealpppata 335-346
347-477 HRNFHLDPKLADILSPRLIRRGSKKRPARS
SHQELRRDEGSQDQTGSLSRARPSSRHVRH
ASVPATFMPIVVPEPPTSVGPPVAVPEPIG
FPTRAHPTLQAPSLEDVTKQYMLNLHSGEV
PAPVPVDMPCL
plaappsaeakppeaarpadeptpa 478-502
503-565 SKCCSKPQVDMRKHVAMTLLDTEQSYVESL
RTLMQGYMQPLKQPENSVLCDPSLVDEIFD
QIP
ellehheqfleq 566-577
578-766 VRHCMQTWHAQQKVGALLVQSFSKDVLVNI
YSAYIDNFLNAKDAVRVAKEARPAFLKFLE
QSMRENKEKQALSDLMIKPVQRIPRYELLV
KDLLKHTPEDHPDHPLLLEAQRNIKQVAER
INKGVRSAEEAERHARVLQEIEAHIEGMED
LQAPLRRFLRQEMVIEVKAIGGKKDRSLFL
FTDLIVCTT
lkrksgslrrssmsl 767-781
782-1011 YTAASVIDTASKYKMLWKLPLEDADIIKGA
SQATNRENIQKAISRLDEDLTTLGQMSKLS
ESLGFPHQSLDDALRDLSAAMHRDLSEKQA
LCYALSFPPTKLELCATRPEGTDSYIFEFP
HPDARLGFEQAFDEAKRKLASSKSCLDPEF
LKAIPIMKTRSGMQFSCAAPTLNSCPEPSP
EVWVCNSDGYVGQVCLLSLRAEPDVEACIA
VCSARILCIGAVPGLQPRCH
repppslrsppetapepagpeldveaaade 1012-1048
eaatlae
1049-1082 PGPQPCLHISIAGSGLEMTPGLGEGDPRPE
LVPF
dsdsddesspsps 1083-1095
1096-1099 GTLQ
sqasrstisss 1100-1110
1111-1113 FGN
eetpsskeataettsseeeqepgflplsgs 1114-1149
fgpggp
1150-1436 CGTSPMDGRALRRSSHGSFTRGSLEDLLSV
DPEAYQSSVWLGTEDGCVHVYQSSDSIRDR
RNSMKLQHAASVTCILYLNNQVFVSLANGE
LVVYQREAGHFWDPQNFKSVTLGTQGSPIT
KMVSVGGRLWCGCQNRVLVLSPDTLQLEHM
FYVGQDSSRCVACMVDSSLGVWVTLKGSAH
VCLYHPDTFEQLAEVDVTPPVHRMLAGSDA
IIRQHKAACLRITALLVCEELLWVGTSAGV
VLTMPTSPGTVSCPRAPLSPTGLGQGHTGH
VRFLAAVQLPDGFNLLC
ptpppppdtgp 1437-1447
1448-1485 EKLPSLEHRDSPWHRGPAPARPKMLVISGG
DGYEDFRL
ssgggsss 1486-1493
1494-1510 ETVGRDDSTNHLLLWRV
low complexity regions: SEG 25 3.0 3.3
>gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
1-1 M
arrlprtsalkssssellltgpgaeedplp 2-32
l
33-135 IVQDQYVQEARQVFEKIQRMGAQQDDGSDA
PPGSPDWAGDVTRGQRSQEELSGPESSLTD
EGIGADPEPPVAAFCGLGTTGMWRPLSSSS
AQTNHHGPGTEDS
lggwalvspetpptpgalrrrrkvppsgsg 136-186
gsefsngeageayrslsdpip
187-274 QRHRAATSEEPTGFSVDSNLLGSLSPKTGL
PATSAMDEGLTSGHSDWSVGSEESKGYQEV
IQSIVQGPGTLGRVVDDRIAGKAPKKKS
lsdpsrrgelagpgfegpggepirevepml 275-344
ppsssepilveqraepeepgatrsraqser
alpealpppa
345-403 TAHRNFHLDPKLADILSPRLIRRGSKKRPA
RSSHQELRRDEGSQDQTGSLSRARPSSRH
vrhasvpatfmpivvpepptsvgppvavpe 404-444
pigfptrahpt
445-465 LQAPSLEDVTKQYMLNLHSGE
vpapvpvdmpclplaappsaeakppeaarp 466-509
adeptpaskccskp
510-663 QVDMRKHVAMTLLDTEQSYVESLRTLMQGY
MQPLKQPENSVLCDPSLVDEIFDQIPELLE
HHEQFLEQVRHCMQTWHAQQKVGALLVQSF
SKDVLVNIYSAYIDNFLNAKDAVRVAKEAR
PAFLKFLEQSMRENKEKQALSDLMIKPVQR
IPRY
ellvkdllkhtpedhpdhpllle 664-686
687-1001 AQRNIKQVAERINKGVRSAEEAERHARVLQ
EIEAHIEGMEDLQAPLRRFLRQEMVIEVKA
IGGKKDRSLFLFTDLIVCTTLKRKSGSLRR
SSMSLYTAASVIDTASKYKMLWKLPLEDAD
IIKGASQATNRENIQKAISRLDEDLTTLGQ
MSKLSESLGFPHQSLDDALRDLSAAMHRDL
SEKQALCYALSFPPTKLELCATRPEGTDSY
IFEFPHPDARLGFEQAFDEAKRKLASSKSC
LDPEFLKAIPIMKTRSGMQFSCAAPTLNSC
PEPSPEVWVCNSDGYVGQVCLLSLRAEPDV
EACIAVCSARILCIG
avpglqprchrepppslrsppetapepagp 1002-1056
eldveaaadeeaatlaepgpqpclh
1057-1060 ISIA
gsglemtpglgegdprpelvpfdsdsddes 1061-1173
spspsgtlqsqasrstisssfgneetpssk
eataettsseeeqepgflplsgsfgpggpc
gtspmdgralrrsshgsftrgsl
1174-1436 EDLLSVDPEAYQSSVWLGTEDGCVHVYQSS
DSIRDRRNSMKLQHAASVTCILYLNNQVFV
SLANGELVVYQREAGHFWDPQNFKSVTLGT
QGSPITKMVSVGGRLWCGCQNRVLVLSPDT
LQLEHMFYVGQDSSRCVACMVDSSLGVWVT
LKGSAHVCLYHPDTFEQLAEVDVTPPVHRM
LAGSDAIIRQHKAACLRITALLVCEELLWV
GTSAGVVLTMPTSPGTVSCPRAPLSPTGLG
QGHTGHVRFLAAVQLPDGFNLLC
ptpppppdtgpeklpslehrdspwhrgpap 1437-1466
1467-1474 ARPKMLVI
sggdgyedfrlssgggsssetvgrdds 1475-1501
1502-1510 TNHLLLWRV
low complexity regions: SEG 45 3.4 3.75
>gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
1-38 MARRLPRTSALKSSSSELLLTGPGAEEDPL
PLIVQDQY
vqearqvfekiqrmgaqqddgsdappgspd 39-105
wagdvtrgqrsqeelsgpessltdegigad
peppvaa
106-227 FCGLGTTGMWRPLSSSSAQTNHHGPGTEDS
LGGWALVSPETPPTPGALRRRRKVPPSGSG
GSEFSNGEAGEAYRSLSDPIPQRHRAATSE
EPTGFSVDSNLLGSLSPKTGLPATSAMDEG
LT
sghsdwsvgseeskgyqeviqsivqgpgtl 228-523
grvvddriagkapkkkslsdpsrrgelagp
gfegpggepirevepmlppsssepilveqr
aepeepgatrsraqseralpealpppatah
rnfhldpkladilsprlirrgskkrparss
hqelrrdegsqdqtgslsrarpssrhvrha
svpatfmpivvpepptsvgppvavpepigf
ptrahptlqapsledvtkqymlnlhsgevp
apvpvdmpclplaappsaeakppeaarpad
eptpaskccskpqvdmrkhvamtlld
524-946 TEQSYVESLRTLMQGYMQPLKQPENSVLCD
PSLVDEIFDQIPELLEHHEQFLEQVRHCMQ
TWHAQQKVGALLVQSFSKDVLVNIYSAYID
NFLNAKDAVRVAKEARPAFLKFLEQSMREN
KEKQALSDLMIKPVQRIPRYELLVKDLLKH
TPEDHPDHPLLLEAQRNIKQVAERINKGVR
SAEEAERHARVLQEIEAHIEGMEDLQAPLR
RFLRQEMVIEVKAIGGKKDRSLFLFTDLIV
CTTLKRKSGSLRRSSMSLYTAASVIDTASK
YKMLWKLPLEDADIIKGASQATNRENIQKA
ISRLDEDLTTLGQMSKLSESLGFPHQSLDD
ALRDLSAAMHRDLSEKQALCYALSFPPTKL
ELCATRPEGTDSYIFEFPHPDARLGFEQAF
DEAKRKLASSKSCLDPEFLKAIPIMKTRSG
MQF
scaaptlnscpepspevwvcnsdgyvgqvc 947-1182
llslraepdveaciavcsarilcigavpgl
qprchrepppslrsppetapepagpeldve
aaadeeaatlaepgpqpclhisiagsglem
tpglgegdprpelvpfdsdsddesspspsg
tlqsqasrstisssfgneetpsskeataet
tsseeeqepgflplsgsfgpggpcgtspmd
gralrrsshgsftrgsledllsvdpe
1183-1510 AYQSSVWLGTEDGCVHVYQSSDSIRDRRNS
MKLQHAASVTCILYLNNQVFVSLANGELVV
YQREAGHFWDPQNFKSVTLGTQGSPITKMV
SVGGRLWCGCQNRVLVLSPDTLQLEHMFYV
GQDSSRCVACMVDSSLGVWVTLKGSAHVCL
YHPDTFEQLAEVDVTPPVHRMLAGSDAIIR
QHKAACLRITALLVCEELLWVGTSAGVVLT
MPTSPGTVSCPRAPLSPTGLGQGHTGHVRF
LAAVQLPDGFNLLCPTPPPPPDTGPEKLPS
LEHRDSPWHRGPAPARPKMLVISGGDGYED
FRLSSGGGSSSETVGRDDSTNHLLLWRV
low complexity regions: XNU
# Score cutoff = 21, Search from offsets 1 to 4
# both members of each repeat flagged
# lambda = 0.347, K = 0.200, H = 0.664
>gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQDDGS
DAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSS
SSAQTNHHGPGTEDSLGGWALVSPETPPTPGALrrrrkvppsgsggsEFSNGEAGEAYRS
LSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEES
KGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV
EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADIL
SPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE
PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLA
APPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHVAMTLLDTEQSYVESlrtlmqgym
qplkqpENSVLCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFS
KDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENKEKQALSDLMIKPVQRI
PRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINKGVRSAEEAERHARVLQEIEA
HIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTDLIVCTTLKRKSGSLRRSSMS
LYTAASVIDTASKYKMLWKLPLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKL
SESLGFPHQSLDDALRDLSAAMHRDLSEKQALCYALSFPPTKLELCATRPEGTDSYIFEF
PHPDARLGFEQAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAAPTLNSCPEPS
PEVWVCNSDGYVGQVCLLSLRAEPDVEACIAVCSARILCIGAVPGLQPRCHREPPPSLRS
PPETAPEPAGPELDVEAAADEEAATLAEPGPQPCLHISIAGSGLEMTPGLGEGDPRPELV
PFdsdsddesspspsgtlqsqasrstisssfgneetpsskeataettsseeeqePGFLPL
SGSFGPGGPCGTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVY
QSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHFWDPQNFKSVT
LGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGV
WVTLKGSAHVCLYHPDTFEQLAEVDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCEEL
LWVGTSAGVVLTMPTSPGTVSCPRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLCptpp
pppDTGPEKLPSLEHRDSPWHRGPAPARPKMLVISGGDGYEDFRLssgggsssetvgrdd
stnhlllWRV
1 - 153 MARRLPRTSA LKSSSSELLL TGPGAEEDPL PLIVQDQYVQ EARQVFEKIQ RMGAQQDDGS
DAPPGSPDWA GDVTRGQRSQ EELSGPESSL TDEGIGADPE PPVAAFCGLG TTGMWRPLSS
SSAQTNHHGP GTEDSLGGWA LVSPETPPTP GAL
154 - 167 rrrrkvp psgsggs
168 - 531 EFS NGEAGEAYRS LSDPIPQRHR AATSEEPTGF SVDSNLLGSL SPKTGLPATS AMDEGLT
SGH SDWSVGSEES KGYQEVIQSI VQGPGTLGRV VDDRIAGKAP KKKSLSDPSR RGELAGP
GFE GPGGEPIREV EPMLPPSSSE PILVEQRAEP EEPGATRSRA QSERALPEAL PPPATAH
RNF HLDPKLADIL SPRLIRRGSK KRPARSSHQE LRRDEGSQDQ TGSLSRARPS SRHVRHA
SVP ATFMPIVVPE PPTSVGPPVA VPEPIGFPTR AHPTLQAPSL EDVTKQYMLN LHSGEVP
APV PVDMPCLPLA APPSAEAKPP EAARPADEPT PASKCCSKPQ VDMRKHVAMT LLDTEQS
YVE S
532 - 546 lrtlmqgym qplkqp
547 - 1082 ENSV LCDPSLVDEI FDQIPELLEH HEQFLEQVRH CMQTWHAQQK VGALLVQSFS KDVLVN
IYSA YIDNFLNAKD AVRVAKEARP AFLKFLEQSM RENKEKQALS DLMIKPVQRI PRYELL
VKDL LKHTPEDHPD HPLLLEAQRN IKQVAERINK GVRSAEEAER HARVLQEIEA HIEGME
DLQA PLRRFLRQEM VIEVKAIGGK KDRSLFLFTD LIVCTTLKRK SGSLRRSSMS LYTAAS
VIDT ASKYKMLWKL PLEDADIIKG ASQATNRENI QKAISRLDED LTTLGQMSKL SESLGF
PHQS LDDALRDLSA AMHRDLSEKQ ALCYALSFPP TKLELCATRP EGTDSYIFEF PHPDAR
LGFE QAFDEAKRKL ASSKSCLDPE FLKAIPIMKT RSGMQFSCAA PTLNSCPEPS PEVWVC
NSDG YVGQVCLLSL RAEPDVEACI AVCSARILCI GAVPGLQPRC HREPPPSLRS PPETAP
EPAG PELDVEAAAD EEAATLAEPG PQPCLHISIA GSGLEMTPGL GEGDPRPELV PF
1083 - 1134 dsdsddes spspsgtlqs qasrstisss fgneetpssk eataettsse eeqe
1135 - 1436 PGFLPL SGSFGPGGPC GTSPMDGRAL RRSSHGSFTR GSLEDLLSVD PEAYQSSVWL GTED
GCVHVY QSSDSIRDRR NSMKLQHAAS VTCILYLNNQ VFVSLANGEL VVYQREAGHF WDPQ
NFKSVT LGTQGSPITK MVSVGGRLWC GCQNRVLVLS PDTLQLEHMF YVGQDSSRCV ACMV
DSSLGV WVTLKGSAHV CLYHPDTFEQ LAEVDVTPPV HRMLAGSDAI IRQHKAACLR ITAL
LVCEEL LWVGTSAGVV LTMPTSPGTV SCPRAPLSPT GLGQGHTGHV RFLAAVQLPD GFNL
LC
1437 - 1443 ptpp ppp
1444 - 1485 DTGPEKL PSLEHRDSPW HRGPAPARPK MLVISGGDGY EDFRL
1486 - 1507 ssggg sssetvgrdd stnhlll
1508 - 1510 WRV
low complexity regions: DUST
>gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQDDGS
DAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSS
SSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRS
LSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEES
KGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV
EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADIL
SPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE
PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLA
APPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYM
QPLKQPENSVLCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFS
KDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENKEKQALSDLMIKPVQRI
PRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINKGVRSAEEAERHARVLQEIEA
HIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTDLIVCTTLKRKSGSLRRSSMS
LYTAASVIDTASKYKMLWKLPLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKL
SESLGFPHQSLDDALRDLSAAMHRDLSEKQALCYALSFPPTKLELCATRPEGTDSYIFEF
PHPDARLGFEQAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAAPTLNSCPEPS
PEVWVCNSDGYVGQVCLLSLRAEPDVEACIAVCSARILCIGAVPGLQPRCHREPPPSLRS
PPETAPEPAGPELDVEAAADEEAATLAEPGPQPCLHISIAGSGLEMTPGLGEGDPRPELV
PFDSDSDDESSPSPSGTLQSQASRSTISSSFGNEETPSSKEATAETTSSEEEQEPGFLPL
SGSFGPGGPCGTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVY
QSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHFWDPQNFKSVT
LGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGV
WVTLKGSAHVCLYHPDTFEQLAEVDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCEEL
LWVGTSAGVVLTMPTSPGTVSCPRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLCPTPP
PPPDTGPEKLPSLEHRDSPWHRGPAPARPKMLVISGGDGYEDFRLSSGGGSSSETVGRDD
STNHLLLWRV
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
coiled coil prediction for gi|2224615|dbj|BAA20795.1|
sequence: 1470 amino acids, 41 residue(s) in coiled coil state
Coil 1 * 688* 729* RNIKQVAERINKGVRSAEEAERHARVLQEIEAHIEGMEDLQA
. | . | . | . | . | . 60
MARRLPRTSA LKSSSSELLL TGPGAEEDPL PLIVQDQYVQ EARQVFEKIQ RMGAQQDDGS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~11 1111111111 11~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 120
DAPPGSPDWA GDVTRGQRSQ EELSGPESSL TDEGIGADPE PPVAAFCGLG TTGMWRPLSS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 180
SSAQTNHHGP GTEDSLGGWA LVSPETPPTP GALRRRRKVP PSGSGGSEFS NGEAGEAYRS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 240
LSDPIPQRHR AATSEEPTGF SVDSNLLGSL SPKTGLPATS AMDEGLTSGH SDWSVGSEES
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 300
KGYQEVIQSI VQGPGTLGRV VDDRIAGKAP KKKSLSDPSR RGELAGPGFE GPGGEPIREV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 360
EPMLPPSSSE PILVEQRAEP EEPGATRSRA QSERALPEAL PPPATAHRNF HLDPKLADIL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 420
SPRLIRRGSK KRPARSSHQE LRRDEGSQDQ TGSLSRARPS SRHVRHASVP ATFMPIVVPE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 480
PPTSVGPPVA VPEPIGFPTR AHPTLQAPSL EDVTKQYMLN LHSGEVPAPV PVDMPCLPLA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 540
APPSAEAKPP EAARPADEPT PASKCCSKPQ VDMRKHVAMT LLDTEQSYVE SLRTLMQGYM
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 600
QPLKQPENSV LCDPSLVDEI FDQIPELLEH HEQFLEQVRH CMQTWHAQQK VGALLVQSFS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 660
KDVLVNIYSA YIDNFLNAKD AVRVAKEARP AFLKFLEQSM RENKEKQALS DLMIKPVQRI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~66666666 6666662221 ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 720
PRYELLVKDL LKHTPEDHPD HPLLLEAQRN IKQVAERINK GVRSAEEAER HARVLQEIEA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~33366 6666666666 6666699999 9999999999 * 21 M'95 -w border
---------- ---------- -----cdefg abcdefgabc defgafgabc defgabcdef * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~266666 6666666666 * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~11144466 6666666666 6666666666 5555555555 * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~99999999 9999999999 9999999999 9998888333 * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~37799999 9999999999 1145588888 8888888885 * 14 M'95 -w local
. | . | . | . | . | . 780
HIEGMEDLQA PLRRFLRQEM VIEVKAIGGK KDRSLFLFTD LIVCTTLKRK SGSLRRSSMS
9999999553 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
gabcdefdef ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
6666665221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
5555554221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
3333333333 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
5555555553 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 840
LYTAASVIDT ASKYKMLWKL PLEDADIIKG ASQATNRENI QKAISRLDED LTTLGQMSKL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3334444444 4444444444 4444441~~~ * 21 M'95 -w border
---------- ---------- ---------- bcdefgabcd efgabcdefg abcdefg--- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3338888888 8888888888 888888611~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1112222222 2222222222 2222221~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~1166888 8888888888 8333~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 900
SESLGFPHQS LDDALRDLSA AMHRDLSEKQ ALCYALSFPP TKLELCATRP EGTDSYIFEF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~22 2222222222 2211~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 960
PHPDARLGFE QAFDEAKRKL ASSKSCLDPE FLKAIPIMKT RSGMQFSCAA PTLNSCPEPS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~366 6666666666 6652~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1020
PEVWVCNSDG YVGQVCLLSL RAEPDVEACI AVCSARILCI GAVPGLQPRC HREPPPSLRS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1080
PPETAPEPAG PELDVEAAAD EEAATLAEPG PQPCLHISIA GSGLEMTPGL GEGDPRPELV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~111111 11111111~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1140
PFDSDSDDES SPSPSGTLQS QASRSTISSS FGNEETPSSK EATAETTSSE EEQEPGFLPL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1200
SGSFGPGGPC GTSPMDGRAL RRSSHGSFTR GSLEDLLSVD PEAYQSSVWL GTEDGCVHVY
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1260
QSSDSIRDRR NSMKLQHAAS VTCILYLNNQ VFVSLANGEL VVYQREAGHF WDPQNFKSVT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1320
LGTQGSPITK MVSVGGRLWC GCQNRVLVLS PDTLQLEHMF YVGQDSSRCV ACMVDSSLGV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1380
WVTLKGSAHV CLYHPDTFEQ LAEVDVTPPV HRMLAGSDAI IRQHKAACLR ITALLVCEEL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1440
LWVGTSAGVV LTMPTSPGTV SCPRAPLSPT GLGQGHTGHV RFLAAVQLPD GFNLLCPTPP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . |
PPPDTGPEKL PSLEHRDSPW HRGPAPARPK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
---------- ---------- ----------
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
prediction of transmembrane regions with toppred2
***********************************
*TOPPREDM with eukaryotic function*
***********************************
tem4.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem4.___inter___
(1 sequences)
MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQ
RMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPE
PPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP
GALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF
SVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSI
VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV
EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNF
HLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPS
SRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSL
EDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPT
PASKCCSKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV
LCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFS
KDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENKEKQALS
DLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINK
GVRSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGK
KDRSLFLFTDLIVCTTLKRKSGSLRRSSMSLYTAASVIDTASKYKMLWKL
PLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKLSESLGFPHQS
LDDALRDLSAAMHRDLSEKQALCYALSFPPTKLELCATRPEGTDSYIFEF
PHPDARLGFEQAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAA
PTLNSCPEPSPEVWVCNSDGYVGQVCLLSLRAEPDVEACIAVCSARILCI
GAVPGLQPRCHREPPPSLRSPPETAPEPAGPELDVEAAADEEAATLAEPG
PQPCLHISIAGSGLEMTPGLGEGDPRPELVPFDSDSDDESSPSPSGTLQS
QASRSTISSSFGNEETPSSKEATAETTSSEEEQEPGFLPLSGSFGPGGPC
GTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVY
QSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHF
WDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMF
YVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPV
HRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTV
SCPRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLCPTPPPPPDTGPEKL
PSLEHRDSPWHRGPAPARPKMLVISGGDGYEDFRLSSGGGSSSETVGRDD
STNHLLLWRV
(p)rokaryotic or (e)ukaryotic: e
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 128 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 99 119 0.874 Putative
2 407 427 0.848 Putative
3 465 485 0.617 Putative
4 987 1007 0.903 Putative
5 1052 1072 0.668 Putative
6 1135 1155 1.224 Certain
7 1217 1237 0.725 Putative
8 1308 1328 0.636 Putative
9 1380 1400 1.539 Certain
Warning! Only printing 30 out of 128 structures
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6 7 8 9
Loop length 98 287 37 501 44 62 61 70 51 110
K+R profile + 2.00 3.00 + 5.00
+ + + + +
CYT-EXT prof -0.22 - - 0.28 -
0.43 -0.50 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 10.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.80
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 2 3 4 5 6 7 8 9
Loop length 406 37 501 44 62 61 70 51 110
K+R profile + + + + +
2.00 3.00 + 5.00
CYT-EXT prof 0.32 -0.50 0.19 1.18 0.57
- - 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -10.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.47
-> Orientation: N-out
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 1 3 4 5 6 7 8 9
Loop length 98 345 501 44 62 61 70 51 110
K+R profile + + + + +
+ 3.00 + 5.00
CYT-EXT prof -0.22 -0.50 0.19 1.18 0.57
0.73 - 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -8.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.20
-> Orientation: N-out
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 3 4 5 6 7 8 9
Loop length 464 501 44 62 61 70 51 110
K+R profile + 3.00 + 5.00
+ + + +
CYT-EXT prof 0.57 - 0.28 -
-0.50 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 8.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: -0.58
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 1 2 4 5 6 7 8 9
Loop length 98 287 559 44 62 61 70 51 110
K+R profile + + + + +
+ 3.00 + 5.00
CYT-EXT prof -0.22 -0.22 0.19 1.18 0.57
0.43 - 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -8.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.79
-> Orientation: N-out
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 2 4 5 6 7 8 9
Loop length 406 559 44 62 61 70 51 110
K+R profile + 3.00 + 5.00
+ + + +
CYT-EXT prof 0.32 - 0.28 -
-0.22 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 8.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: -1.12
-> Orientation: N-in
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 4 5 6 7 8 9
Loop length 98 867 44 62 61 70 51 110
K+R profile + 3.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - 0.28 -
0.21 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 8.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.08
-> Orientation: N-in
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 4 5 6 7 8 9
Loop length 986 44 62 61 70 51 110
K+R profile + + + +
3.00 + 5.00
CYT-EXT prof 0.17 0.19 1.18 0.57
- 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -8.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -4.00
(NEG-POS)/(NEG+POS): 0.0837
NEG: 136.0000
POS: 115.0000
-> Orientation: N-out
CYT-EXT difference: 1.83
-> Orientation: N-out
----------------------------------------------------------------------
Structure 9
Transmembrane segments included in this structure:
Segment 1 2 3 6 7 8 9
Loop length 98 287 37 649 61 70 51 110
K+R profile + 2.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - 0.28 -
0.43 -0.44 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 7.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.67
-> Orientation: N-in
----------------------------------------------------------------------
Structure 10
Transmembrane segments included in this structure:
Segment 2 3 6 7 8 9
Loop length 406 37 649 61 70 51 110
K+R profile + + + +
2.00 + 5.00
CYT-EXT prof 0.32 -0.44 1.18 0.57
- 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -7.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 11
Transmembrane segments included in this structure:
Segment 1 2 3 5 6 8 9
Loop length 98 287 37 566 62 152 51 110
K+R profile + 2.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - 0.19 -
0.43 -0.57 1.05 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 7.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.51
-> Orientation: N-in
----------------------------------------------------------------------
Structure 12
Transmembrane segments included in this structure:
Segment 2 3 5 6 8 9
Loop length 406 37 566 62 152 51 110
K+R profile + + + +
2.00 + 5.00
CYT-EXT prof 0.32 -0.57 1.05 0.57
- 0.19 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -7.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.17
-> Orientation: N-out
----------------------------------------------------------------------
Structure 13
Transmembrane segments included in this structure:
Segment 1 2 3 4 6 8 9
Loop length 98 287 37 501 127 152 51 110
K+R profile + 2.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - -0.06 -
0.43 -0.50 1.05 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 7.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.82
-> Orientation: N-in
----------------------------------------------------------------------
Structure 14
Transmembrane segments included in this structure:
Segment 2 3 4 6 8 9
Loop length 406 37 501 127 152 51 110
K+R profile + + + +
2.00 + 5.00
CYT-EXT prof 0.32 -0.50 1.05 0.57
- -0.06 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -7.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.49
-> Orientation: N-out
----------------------------------------------------------------------
Structure 15
Transmembrane segments included in this structure:
Segment 1 3 5 6 7 8 9
Loop length 98 345 566 62 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.57 0.28 -
0.73 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -3.18
-> Orientation: N-in
----------------------------------------------------------------------
Structure 16
Transmembrane segments included in this structure:
Segment 3 5 6 7 8 9
Loop length 464 566 62 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.57 0.19 1.18 0.57
-0.57 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: 2.80
-> Orientation: N-out
----------------------------------------------------------------------
Structure 17
Transmembrane segments included in this structure:
Segment 1 2 5 6 7 8 9
Loop length 98 287 624 62 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.31 0.28 -
0.43 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.61
-> Orientation: N-in
----------------------------------------------------------------------
Structure 18
Transmembrane segments included in this structure:
Segment 2 5 6 7 8 9
Loop length 406 624 62 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.32 0.19 1.18 0.57
-0.31 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 2.28
-> Orientation: N-out
----------------------------------------------------------------------
Structure 19
Transmembrane segments included in this structure:
Segment 1 5 6 7 8 9
Loop length 98 932 62 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 0.19 1.18 0.57
0.11 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 1.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 20
Transmembrane segments included in this structure:
Segment 5 6 7 8 9
Loop length 1051 62 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.09 0.28 -
0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.1019
NEG: 146.0000
POS: 119.0000
-> Orientation: N-out
CYT-EXT difference: -1.57
-> Orientation: N-in
----------------------------------------------------------------------
Structure 21
Transmembrane segments included in this structure:
Segment 1 3 4 6 7 8 9
Loop length 98 345 501 127 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.50 0.28 -
0.73 -0.06 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.86
-> Orientation: N-in
----------------------------------------------------------------------
Structure 22
Transmembrane segments included in this structure:
Segment 3 4 6 7 8 9
Loop length 464 501 127 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.57 -0.06 1.18 0.57
-0.50 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: 2.48
-> Orientation: N-out
----------------------------------------------------------------------
Structure 23
Transmembrane segments included in this structure:
Segment 1 2 4 6 7 8 9
Loop length 98 287 559 127 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.22 0.28 -
0.43 -0.06 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.28
-> Orientation: N-in
----------------------------------------------------------------------
Structure 24
Transmembrane segments included in this structure:
Segment 2 4 6 7 8 9
Loop length 406 559 127 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.32 -0.06 1.18 0.57
-0.22 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.01
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.94
-> Orientation: N-out
----------------------------------------------------------------------
Structure 25
Transmembrane segments included in this structure:
Segment 1 4 6 7 8 9
Loop length 98 867 127 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 -0.06 1.18 0.57
0.21 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.01
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.98
-> Orientation: N-out
----------------------------------------------------------------------
Structure 26
Transmembrane segments included in this structure:
Segment 4 6 7 8 9
Loop length 986 127 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.17 0.28 -
-0.06 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -4.00
(NEG-POS)/(NEG+POS): 0.0837
NEG: 136.0000
POS: 115.0000
-> Orientation: N-out
CYT-EXT difference: -1.24
-> Orientation: N-in
----------------------------------------------------------------------
Structure 27
Transmembrane segments included in this structure:
Segment 1 3 6 7 8 9
Loop length 98 345 649 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 -0.44 1.18 0.57
0.73 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.07
-> Orientation: N-out
----------------------------------------------------------------------
Structure 28
Transmembrane segments included in this structure:
Segment 3 6 7 8 9
Loop length 464 649 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.57 0.28 -
-0.44 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: -0.45
-> Orientation: N-in
----------------------------------------------------------------------
Structure 29
Transmembrane segments included in this structure:
Segment 1 2 6 7 8 9
Loop length 98 287 707 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 -0.23 1.18 0.57
0.43 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.01
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.58
-> Orientation: N-out
----------------------------------------------------------------------
Structure 30
Transmembrane segments included in this structure:
Segment 2 6 7 8 9
Loop length 406 707 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.32 0.28 -
-0.23 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: -0.91
-> Orientation: N-in
----------------------------------------------------------------------
"tem4" 1510
99 119 #f 0.873958
407 427 #f 0.847917
465 485 #f 0.616667
987 1007 #f 0.903125
1052 1072 #f 0.667708
1135 1155 #t 1.22396
1217 1237 #f 0.725
1308 1328 #f 0.636458
1380 1400 #t 1.53854
************************************
*TOPPREDM with prokaryotic function*
************************************
tem4.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem4.___inter___
(1 sequences)
MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQ
RMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPE
PPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP
GALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF
SVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSI
VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV
EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNF
HLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPS
SRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSL
EDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPT
PASKCCSKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV
LCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFS
KDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENKEKQALS
DLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINK
GVRSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGK
KDRSLFLFTDLIVCTTLKRKSGSLRRSSMSLYTAASVIDTASKYKMLWKL
PLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKLSESLGFPHQS
LDDALRDLSAAMHRDLSEKQALCYALSFPPTKLELCATRPEGTDSYIFEF
PHPDARLGFEQAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAA
PTLNSCPEPSPEVWVCNSDGYVGQVCLLSLRAEPDVEACIAVCSARILCI
GAVPGLQPRCHREPPPSLRSPPETAPEPAGPELDVEAAADEEAATLAEPG
PQPCLHISIAGSGLEMTPGLGEGDPRPELVPFDSDSDDESSPSPSGTLQS
QASRSTISSSFGNEETPSSKEATAETTSSEEEQEPGFLPLSGSFGPGGPC
GTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVY
QSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHF
WDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMF
YVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPV
HRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTV
SCPRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLCPTPPPPPDTGPEKL
PSLEHRDSPWHRGPAPARPKMLVISGGDGYEDFRLSSGGGSSSETVGRDD
STNHLLLWRV
(p)rokaryotic or (e)ukaryotic: p
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 128 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 99 119 0.874 Putative
2 407 427 0.848 Putative
3 465 485 0.617 Putative
4 987 1007 0.903 Putative
5 1052 1072 0.668 Putative
6 1135 1155 1.224 Certain
7 1217 1237 0.725 Putative
8 1308 1328 0.636 Putative
9 1380 1400 1.539 Certain
Warning! Only printing 30 out of 128 structures
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6 7 8 9
Loop length 98 287 37 501 44 62 61 70 51 110
K+R profile + 2.00 3.00 + 5.00
+ + + + +
CYT-EXT prof -0.22 - - 0.28 -
0.43 -0.50 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 10.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.80
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 2 3 4 5 6 7 8 9
Loop length 406 37 501 44 62 61 70 51 110
K+R profile + + + + +
2.00 3.00 + 5.00
CYT-EXT prof 0.32 -0.50 0.19 1.18 0.57
- - 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -10.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.47
-> Orientation: N-out
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 1 3 4 5 6 7 8 9
Loop length 98 345 501 44 62 61 70 51 110
K+R profile + + + + +
+ 3.00 + 5.00
CYT-EXT prof -0.22 -0.50 0.19 1.18 0.57
0.73 - 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -8.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.20
-> Orientation: N-out
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 3 4 5 6 7 8 9
Loop length 464 501 44 62 61 70 51 110
K+R profile + 3.00 + 5.00
+ + + +
CYT-EXT prof 0.57 - 0.28 -
-0.50 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 8.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: -0.58
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 1 2 4 5 6 7 8 9
Loop length 98 287 559 44 62 61 70 51 110
K+R profile + + + + +
+ 3.00 + 5.00
CYT-EXT prof -0.22 -0.22 0.19 1.18 0.57
0.43 - 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -8.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.79
-> Orientation: N-out
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 2 4 5 6 7 8 9
Loop length 406 559 44 62 61 70 51 110
K+R profile + 3.00 + 5.00
+ + + +
CYT-EXT prof 0.32 - 0.28 -
-0.22 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 8.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: -1.12
-> Orientation: N-in
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 4 5 6 7 8 9
Loop length 98 867 44 62 61 70 51 110
K+R profile + 3.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - 0.28 -
0.21 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 8.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.08
-> Orientation: N-in
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 4 5 6 7 8 9
Loop length 986 44 62 61 70 51 110
K+R profile + + + +
3.00 + 5.00
CYT-EXT prof 0.17 0.19 1.18 0.57
- 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -8.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -4.00
(NEG-POS)/(NEG+POS): 0.0837
NEG: 136.0000
POS: 115.0000
-> Orientation: N-out
CYT-EXT difference: 1.83
-> Orientation: N-out
----------------------------------------------------------------------
Structure 9
Transmembrane segments included in this structure:
Segment 1 2 3 6 7 8 9
Loop length 98 287 37 649 61 70 51 110
K+R profile + 2.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - 0.28 -
0.43 -0.44 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 7.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.67
-> Orientation: N-in
----------------------------------------------------------------------
Structure 10
Transmembrane segments included in this structure:
Segment 2 3 6 7 8 9
Loop length 406 37 649 61 70 51 110
K+R profile + + + +
2.00 + 5.00
CYT-EXT prof 0.32 -0.44 1.18 0.57
- 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -7.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 11
Transmembrane segments included in this structure:
Segment 1 2 3 5 6 8 9
Loop length 98 287 37 566 62 152 51 110
K+R profile + 2.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - 0.19 -
0.43 -0.57 1.05 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 7.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.51
-> Orientation: N-in
----------------------------------------------------------------------
Structure 12
Transmembrane segments included in this structure:
Segment 2 3 5 6 8 9
Loop length 406 37 566 62 152 51 110
K+R profile + + + +
2.00 + 5.00
CYT-EXT prof 0.32 -0.57 1.05 0.57
- 0.19 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -7.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.17
-> Orientation: N-out
----------------------------------------------------------------------
Structure 13
Transmembrane segments included in this structure:
Segment 1 2 3 4 6 8 9
Loop length 98 287 37 501 127 152 51 110
K+R profile + 2.00 + 5.00
+ + + +
CYT-EXT prof -0.22 - -0.06 -
0.43 -0.50 1.05 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 7.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -1.82
-> Orientation: N-in
----------------------------------------------------------------------
Structure 14
Transmembrane segments included in this structure:
Segment 2 3 4 6 8 9
Loop length 406 37 501 127 152 51 110
K+R profile + + + +
2.00 + 5.00
CYT-EXT prof 0.32 -0.50 1.05 0.57
- -0.06 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -7.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.49
-> Orientation: N-out
----------------------------------------------------------------------
Structure 15
Transmembrane segments included in this structure:
Segment 1 3 5 6 7 8 9
Loop length 98 345 566 62 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.57 0.28 -
0.73 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -3.18
-> Orientation: N-in
----------------------------------------------------------------------
Structure 16
Transmembrane segments included in this structure:
Segment 3 5 6 7 8 9
Loop length 464 566 62 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.57 0.19 1.18 0.57
-0.57 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: 2.80
-> Orientation: N-out
----------------------------------------------------------------------
Structure 17
Transmembrane segments included in this structure:
Segment 1 2 5 6 7 8 9
Loop length 98 287 624 62 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.31 0.28 -
0.43 0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.61
-> Orientation: N-in
----------------------------------------------------------------------
Structure 18
Transmembrane segments included in this structure:
Segment 2 5 6 7 8 9
Loop length 406 624 62 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.32 0.19 1.18 0.57
-0.31 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 2.28
-> Orientation: N-out
----------------------------------------------------------------------
Structure 19
Transmembrane segments included in this structure:
Segment 1 5 6 7 8 9
Loop length 98 932 62 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 0.19 1.18 0.57
0.11 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 1.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 20
Transmembrane segments included in this structure:
Segment 5 6 7 8 9
Loop length 1051 62 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.09 0.28 -
0.19 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.1019
NEG: 146.0000
POS: 119.0000
-> Orientation: N-out
CYT-EXT difference: -1.57
-> Orientation: N-in
----------------------------------------------------------------------
Structure 21
Transmembrane segments included in this structure:
Segment 1 3 4 6 7 8 9
Loop length 98 345 501 127 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.50 0.28 -
0.73 -0.06 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.86
-> Orientation: N-in
----------------------------------------------------------------------
Structure 22
Transmembrane segments included in this structure:
Segment 3 4 6 7 8 9
Loop length 464 501 127 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.57 -0.06 1.18 0.57
-0.50 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: 2.48
-> Orientation: N-out
----------------------------------------------------------------------
Structure 23
Transmembrane segments included in this structure:
Segment 1 2 4 6 7 8 9
Loop length 98 287 559 127 61 70 51 110
K+R profile + + + 5.00
+ + + +
CYT-EXT prof -0.22 -0.22 0.28 -
0.43 -0.06 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: -2.28
-> Orientation: N-in
----------------------------------------------------------------------
Structure 24
Transmembrane segments included in this structure:
Segment 2 4 6 7 8 9
Loop length 406 559 127 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof 0.32 -0.06 1.18 0.57
-0.22 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.01
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: 1.94
-> Orientation: N-out
----------------------------------------------------------------------
Structure 25
Transmembrane segments included in this structure:
Segment 1 4 6 7 8 9
Loop length 98 867 127 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 -0.06 1.18 0.57
0.21 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.01
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.98
-> Orientation: N-out
----------------------------------------------------------------------
Structure 26
Transmembrane segments included in this structure:
Segment 4 6 7 8 9
Loop length 986 127 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.17 0.28 -
-0.06 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -4.00
(NEG-POS)/(NEG+POS): 0.0837
NEG: 136.0000
POS: 115.0000
-> Orientation: N-out
CYT-EXT difference: -1.24
-> Orientation: N-in
----------------------------------------------------------------------
Structure 27
Transmembrane segments included in this structure:
Segment 1 3 6 7 8 9
Loop length 98 345 649 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 -0.44 1.18 0.57
0.73 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.07
-> Orientation: N-out
----------------------------------------------------------------------
Structure 28
Transmembrane segments included in this structure:
Segment 3 6 7 8 9
Loop length 464 649 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.57 0.28 -
-0.44 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 0.00
(NEG-POS)/(NEG+POS): 0.0991
NEG: 61.0000
POS: 50.0000
-> Orientation: undecided
CYT-EXT difference: -0.45
-> Orientation: N-in
----------------------------------------------------------------------
Structure 29
Transmembrane segments included in this structure:
Segment 1 2 6 7 8 9
Loop length 98 287 707 61 70 51 110
K+R profile + + + +
+ + 5.00
CYT-EXT prof -0.22 -0.23 1.18 0.57
0.43 0.28 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.01
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -6.00
(NEG-POS)/(NEG+POS): 0.3571
NEG: 19.0000
POS: 9.0000
-> Orientation: N-out
CYT-EXT difference: 0.58
-> Orientation: N-out
----------------------------------------------------------------------
Structure 30
Transmembrane segments included in this structure:
Segment 2 6 7 8 9
Loop length 406 707 61 70 51 110
K+R profile + + 5.00
+ + +
CYT-EXT prof 0.32 0.28 -
-0.23 1.18 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): 0.0769
NEG: 56.0000
POS: 48.0000
-> Orientation: N-in
CYT-EXT difference: -0.91
-> Orientation: N-in
----------------------------------------------------------------------
"tem4" 1510
99 119 #f 0.873958
407 427 #f 0.847917
465 485 #f 0.616667
987 1007 #f 0.903125
1052 1072 #f 0.667708
1135 1155 #t 1.22396
1217 1237 #f 0.725
1308 1328 #f 0.636458
1380 1400 #t 1.53854
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
SAPS. Version of April 11, 1996.
Date run: Wed Oct 11 20:38:41 2000
File: /people/maria/tem4.___saps___
ID gi|2224615|dbj|BAA20795.1|
DE KIAA0337 [Homo sapiens]
number of residues: 1510; molecular weight: 163.6 kdal
1 MARRLPRTSA LKSSSSELLL TGPGAEEDPL PLIVQDQYVQ EARQVFEKIQ RMGAQQDDGS
61 DAPPGSPDWA GDVTRGQRSQ EELSGPESSL TDEGIGADPE PPVAAFCGLG TTGMWRPLSS
121 SSAQTNHHGP GTEDSLGGWA LVSPETPPTP GALRRRRKVP PSGSGGSEFS NGEAGEAYRS
181 LSDPIPQRHR AATSEEPTGF SVDSNLLGSL SPKTGLPATS AMDEGLTSGH SDWSVGSEES
241 KGYQEVIQSI VQGPGTLGRV VDDRIAGKAP KKKSLSDPSR RGELAGPGFE GPGGEPIREV
301 EPMLPPSSSE PILVEQRAEP EEPGATRSRA QSERALPEAL PPPATAHRNF HLDPKLADIL
361 SPRLIRRGSK KRPARSSHQE LRRDEGSQDQ TGSLSRARPS SRHVRHASVP ATFMPIVVPE
421 PPTSVGPPVA VPEPIGFPTR AHPTLQAPSL EDVTKQYMLN LHSGEVPAPV PVDMPCLPLA
481 APPSAEAKPP EAARPADEPT PASKCCSKPQ VDMRKHVAMT LLDTEQSYVE SLRTLMQGYM
541 QPLKQPENSV LCDPSLVDEI FDQIPELLEH HEQFLEQVRH CMQTWHAQQK VGALLVQSFS
601 KDVLVNIYSA YIDNFLNAKD AVRVAKEARP AFLKFLEQSM RENKEKQALS DLMIKPVQRI
661 PRYELLVKDL LKHTPEDHPD HPLLLEAQRN IKQVAERINK GVRSAEEAER HARVLQEIEA
721 HIEGMEDLQA PLRRFLRQEM VIEVKAIGGK KDRSLFLFTD LIVCTTLKRK SGSLRRSSMS
781 LYTAASVIDT ASKYKMLWKL PLEDADIIKG ASQATNRENI QKAISRLDED LTTLGQMSKL
841 SESLGFPHQS LDDALRDLSA AMHRDLSEKQ ALCYALSFPP TKLELCATRP EGTDSYIFEF
901 PHPDARLGFE QAFDEAKRKL ASSKSCLDPE FLKAIPIMKT RSGMQFSCAA PTLNSCPEPS
961 PEVWVCNSDG YVGQVCLLSL RAEPDVEACI AVCSARILCI GAVPGLQPRC HREPPPSLRS
1021 PPETAPEPAG PELDVEAAAD EEAATLAEPG PQPCLHISIA GSGLEMTPGL GEGDPRPELV
1081 PFDSDSDDES SPSPSGTLQS QASRSTISSS FGNEETPSSK EATAETTSSE EEQEPGFLPL
1141 SGSFGPGGPC GTSPMDGRAL RRSSHGSFTR GSLEDLLSVD PEAYQSSVWL GTEDGCVHVY
1201 QSSDSIRDRR NSMKLQHAAS VTCILYLNNQ VFVSLANGEL VVYQREAGHF WDPQNFKSVT
1261 LGTQGSPITK MVSVGGRLWC GCQNRVLVLS PDTLQLEHMF YVGQDSSRCV ACMVDSSLGV
1321 WVTLKGSAHV CLYHPDTFEQ LAEVDVTPPV HRMLAGSDAI IRQHKAACLR ITALLVCEEL
1381 LWVGTSAGVV LTMPTSPGTV SCPRAPLSPT GLGQGHTGHV RFLAAVQLPD GFNLLCPTPP
1441 PPPDTGPEKL PSLEHRDSPW HRGPAPARPK MLVISGGDGY EDFRLSSGGG SSSETVGRDD
1501 STNHLLLWRV
--------------------------------------------------------------------------------
COMPOSITIONAL ANALYSIS (extremes relative to: swp23s)
A :121( 8.0%); C : 31( 2.1%); D : 81( 5.4%); E :116( 7.7%); F : 38( 2.5%)
G :112( 7.4%); H : 40( 2.6%); I : 47( 3.1%); K : 56( 3.7%); L :150( 9.9%)
M : 32( 2.1%); N- : 25( 1.7%); P+ :144( 9.5%); Q : 68( 4.5%); R : 95( 6.3%)
S :156(10.3%); T : 74( 4.9%); V : 89( 5.9%); W : 14( 0.9%); Y : 21( 1.4%)
KR : 151 ( 10.0%); ED : 197 ( 13.0%); AGP : 377 ( 25.0%);
KRED : 348 ( 23.0%); KR-ED : -46 ( -3.0%); FIKMNY- : 219 ( 14.5%);
LVIFM : 356 ( 23.6%); ST : 230 ( 15.2%).
--------------------------------------------------------------------------------
CHARGE DISTRIBUTIONAL ANALYSIS
1 00++00+000 0+0000-000 00000---00 00000-0000 -0+000-+00 +00000--00
61 -000000-00 0-00+00+00 --0000-000 0--0000-0- 0000000000 00000+0000
121 0000000000 00--000000 0000-00000 000+++++00 0000000-00 00-00-00+0
181 00-0000+0+ 0000--0000 00-0000000 00+0000000 00--000000 0-00000--0
241 +000-00000 00000000+0 0--+000+00 +++000-00+ +0-000000- 0000-00+-0
301 -00000000- 0000-0+0-0 --0000+0+0 00-+000-00 0000000+00 00-0+00-00
361 00+00++00+ ++00+0000- 0++--000-0 00000+0+00 0+00+00000 000000000-
421 0000000000 00-000000+ 0000000000 --00+00000 0000-00000 00-0000000
481 00000-0+00 -00+00--00 000+000+00 0-0++00000 00-0-0000- 00+0000000
541 000+00-000 00-0000--0 0-000-00-0 0-000-00+0 000000000+ 0000000000
601 +-00000000 00-00000+- 00+00+-0+0 000+00-000 +-0+-+0000 -000+000+0
661 0+0-000+-0 0+000--00- 00000-00+0 0+000-+00+ 00+00--0-+ 00+000-0-0
721 00-00--000 00++00+0-0 00-0+0000+ +-+000000- 0000000+++ 0000++0000
781 00000000-0 00+0+000+0 00--0-00+0 000000+-00 0+000+0--- 00000000+0
841 0-00000000 0--00+-000 000+-00-+0 0000000000 0+0-0000+0 -00-0000-0
901 000-0+000- 000--0+++0 000+000-0- 00+00000+0 +000000000 0000000-00
961 0-000000-0 0000000000 +0-0-0-000 00000+0000 00000000+0 0+-00000+0
1021 00-000-000 0-0-0-000- --00000-00 0000000000 0000-00000 0-0-0+0-00
1081 00-0-0---0 0000000000 000+000000 000--0000+ -000-0000- --0-000000
1141 0000000000 00000-0+00 ++0000000+ 000--0000- 0-00000000 00--000000
1201 000-00+-++ 000+000000 0000000000 00000000-0 0000+-0000 0-0000+000
1261 000000000+ 000000+000 0000+00000 0-0000-000 0000-00+00 0000-00000
1321 0000+00000 00000-00-0 00-0-00000 0+00000-00 0+00+0000+ 0000000--0
1381 0000000000 0000000000 000+000000 0000000000 +00000000- 0000000000
1441 000-000-+0 000-0+-000 0+00000+0+ 0000000-00 --0+000000 000-000+--
1501 00000000+0
A. CHARGE CLUSTERS.
Positive charge clusters (cmin = 11/30 or 14/45 or 17/60): none
Negative charge clusters (cmin = 13/30 or 17/45 or 20/60): none
Mixed charge clusters (cmin = 18/30 or 24/45 or 30/60): none
B. HIGH SCORING (UN)CHARGED SEGMENTS.
There are no high scoring positive charge segments.
There are no high scoring negative charge segments.
There are no high scoring mixed charge segments.
There are no high scoring uncharged segments.
C. CHARGE RUNS AND PATTERNS.
pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)|
lmin0 5 | 6 | 8 | 40 | 10 | 11 | 14 | 12 | 13 | 17 | 7 | 10 |
lmin1 7 | 7 | 10 | 48 | 12 | 13 | 17 | 15 | 16 | 20 | 9 | 12 |
lmin2 8 | 9 | 11 | 53 | 14 | 15 | 19 | 17 | 18 | 23 | 10 | 13 |
(Significance level: 0.010000; Minimal displayed length: 6)
There are no charge runs or patterns exceeding the given minimal lengths.
Run count statistics:
+ runs >= 3: 5, at 154; 271; 370; 768; 917;
- runs >= 4: 0
* runs >= 5: 1, at 154;
0 runs >= 27: 0
--------------------------------------------------------------------------------
DISTRIBUTION OF OTHER AMINO ACID TYPES
1. HIGH SCORING SEGMENTS.
There are no high scoring hydrophobic segments.
There are no high scoring transmembrane segments.
2. SPACINGS OF C.
H2N-106-C-368-C-28-C-C-45-C-28-C-182-C-108-C-12-C-39-C-21-C-7-C-9-C-9-C-12-C-3-C-5-C-10-C-43-C-95-C-45-C-26-C-56-C-1-C-26-C-2-C-18-C-36-C-8-C-24-C-33-C-74-COOH
2*. SPACINGS OF C and H. (additional deluxe function for ALEX)
H2N-106-C-19-H-H-60-H-40-H-116-H-3-H-26-H-24-H-2-H-35-H-19-H-13-C-28-C-C-9-H-35-C-17-H-H-8-H-C-4-H-86-H-4-H-2-H-29-H-9-H-42-C-83-H-14-H-9-C-12-C-15-H-23-C-21-C-7-C-9-C-9-C-12-C-3-C-5-C-10-C-H-42-C-1-H-93-C-14-H-30-C-1-H-18-H-5-C-25-H-30-C-1-C-15-H-10-C-2-C-16-H-1-C-2-H-16-H-12-H-3-C-8-C-24-C-13-H-2-H-16-C-18-H-5-H-42-H-6-COOH
--------------------------------------------------------------------------------
REPETITIVE STRUCTURES.
A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet.
Repeat core block length: 5
Aligned matching blocks:
[ 180- 184] SLSDP
[ 274- 278] SLSDP
______________________________
[ 645- 649] EKQAL
[ 868- 872] EKQAL
______________________________
[ 774- 778] LRRSS
[1160-1164] LRRSS
B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet.
(i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C)
Repeat core block length: 9
--------------------------------------------------------------------------------
MULTIPLETS.
A. AMINO ACID ALPHABET.
1. Total number of amino acid multiplets: 111 (Expected range: 65--122)
2. Histogram of spacings between consecutive amino acid multiplets:
(1-5) 40 (6-10) 26 (11-20) 24 (>=21) 22
3. Clusters of amino acid multiplets (cmin = 12/30 or 16/45 or 19/60): none
4. Long amino acid multiplets (>= 5; Letter/Length/Position):
P/5/1439
B. CHARGE ALPHABET.
1. Total number of charge multiplets: 45 (Expected range: 18-- 54)
15 +plets (f+: 10.0%), 30 -plets (f-: 13.0%)
Total number of charge altplets: 25 (Critical number: 59)
2. Histogram of spacings between consecutive charge multiplets:
(1-5) 5 (6-10) 5 (11-20) 12 (>=21) 24
3. Long charge multiplets (>= 5; Letter/Length/Position):
+/5/154
--------------------------------------------------------------------------------
PERIODICITY ANALYSIS.
A. AMINO ACID ALPHABET (core: 4; !-core: 5)
Location Period Element Copies Core Errors
13- 16 1 S 4 4 0
53- 76 6 G..... 4 4 0
119- 122 1 S 4 4 0
154- 157 1 R 4 4 0
228- 242 3 S.. 5 5 ! 0
278- 313 9 P....E... 4 4 /0/././././1/./././
352- 367 4 L... 4 4 0
483- 506 6 P..... 4 4 0
676- 715 10 E......... 4 4 0
1016-1035 5 P.... 4 4 0
1090-1114 5 S.... 5 5 ! 0
1142-1153 3 G.. 4 4 0
1439-1443 1 P 5 5 ! 0
1439-1454 4 P... 4 4 0
B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 7)
and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core: 9)
Location Period Element Copies Core Errors
154- 158 1 + 5 5 0
522- 570 7 i.0..00 7 7 /0/./2/././2/2/
703- 762 10 *...*..... 6 6 /0/./././2/./././././
1179-1250 9 i...00... 8 8 /0/./././2/1/./././
1278-1325 8 i0..00.0 6 6 /0/1/././2/2/./2/
1314-1361 8 i000.0.. 6 6 /0/2/2/2/./1/././
--------------------------------------------------------------------------------
SPACING ANALYSIS.
Location (Quartile) Spacing Rank P-value Interpretation
107- 476 (1.) C( 369)C 1 of 32 0.0049 large maximal spacing
787- 963 (3.) V( 176)V 1 of 90 0.0010 large 1. maximal spacing
1080-1179 (3.) V( 99)V 2 of 90 0.0094 large 2. maximal spacing
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Pfam (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/Pfam
Sequence file: tem4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 155.8 7.5e-43 1
SH2 Src homology domain 2 4.3 3.3 1
NGF Nerve growth factor family 2.1 19 1
Gastrin Gastrin/cholecystokinin family 1.1 56 1
COLFI Fibrillar collagen C-terminal domain -1.7 78 1
STAT STAT protein -2.8 79 1
SpoA Surface presentation of antigens (SPOA) pr -25.4 87 1
DB DB module -49.0 64 1
DUF61 Protein of unknown function DUF61 -64.4 52 1
Collagen Collagen triple helix repeat (20 copies) -86.3 83 1
Keratin_B2 Keratin, high sulfur B2 protein -91.0 28 1
Translin Translin family -94.7 73 1
DUF47 Protein of unknown function DUF47 -106.1 62 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NGF 1/1 276 285 .. 1 10 [. 2.1 19
Collagen 1/1 253 311 .. 1 60 [] -86.3 83
COLFI 1/1 359 376 .. 1 15 [. -1.7 78
STAT 1/1 452 461 .. 616 625 .] -2.8 79
SH2 1/1 561 571 .. 69 79 .] 4.3 3.3
RhoGEF 1/1 517 700 .. 1 207 [] 155.8 7.5e-43
DUF47 1/1 558 706 .. 1 224 [] -106.1 62
SpoA 1/1 645 711 .. 1 80 [] -25.4 87
Gastrin 1/1 703 712 .. 117 126 .] 1.1 56
DUF61 1/1 686 794 .. 1 140 [] -64.4 52
Translin 1/1 684 839 .. 1 224 [] -94.7 73
DB 1/1 939 1012 .. 1 124 [] -49.0 64
Keratin_B2 1/1 918 1029 .. 1 177 [] -91.0 28
Alignments of top-scoring domains:
NGF: domain 1 of 1, from 276 to 285: score 2.1, E = 19
*->epvsrRGElS<-*
+++srRGEl+
gi|2224615 276 SDPSRRGELA 285
Collagen: domain 1 of 1, from 253 to 311: score -86.3, E = 83
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
pG G+ + +G++ + p +G pG+ Gp G+p
gi|2224615 253 -GPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIR 298
pGppGapGapGpp<-*
+p p + +p
gi|2224615 299 EVEPMLPPSSSEP 311
COLFI: domain 1 of 1, from 359 to 376: score -1.7, E = 78
*->lksP....eGksrknPARt<-*
++sP+ + G s+k PAR+
gi|2224615 359 ILSPrlirRG-SKKRPARS 376
STAT: domain 1 of 1, from 452 to 461: score -2.8, E = 79
*->DLiKkHllpl<-*
D++K ++l l
gi|2224615 452 DVTKQYMLNL 461
SH2: domain 1 of 1, from 561 to 571: score 4.3, E = 3.3
*->FssLpeLvehY<-*
F+ +peL eh+
gi|2224615 561 FDQIPELLEHH 571
RhoGEF: domain 1 of 1, from 517 to 700: score 155.8, E = 7.5e-43
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
v+ ll TE Yv++L++l ++ym+pL++++ s + +p ++ iF
gi|2224615 517 VAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV--LCDPSLVDEIF 561
sNiediyefhreFLkssLearisssqfedlDekkiepsaprlGdlFlkl.
i++++e h +FL +++++ ++ +G+l+ ++
gi|2224615 562 DQIPELLEHHEQFLE-QVRHCMQTW-----------HAQQKVGALLVQSf 599
.kepflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
+k+ ++Y +Y++n+ +A++ ++ ++++p+F +fl++ + + n++
gi|2224615 600 sKDVLVNIYSAYIDNFLNAKDAVRV--AKEARPAFLKFLEQSMRE-NKE- 645
kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkal
k L++L++kPvqRi+rY+LL+k+LLkhtpe d+pd+++L +a+
gi|2224615 646 -----KQALSDLMIKPVQRIPRYELLVKDLLKHTPE--DHPDHPLLLEAQ 688
dllqdlaksiNe<-*
++++ +a++iN+
gi|2224615 689 RNIKQVAERINK 700
DUF47: domain 1 of 1, from 558 to 706: score -106.1, E = 62
*->klflFekspfkplieHlekvvetvlkleelfealirGdyervEellk
+ f+ + e+le +++ ++ + ++++ + + ++ +
gi|2224615 558 ------DEIFDQIPELLEHHEQFLEQVRHCMQTWHA----QQKVGAL 594
eIselEreADeikreirlkltsGaFLPvdRtDllelvelqDkiaDaaEdi
+ + ++++ +++s +D+ ++ a+d+
gi|2224615 595 LVQSF-------SKDVLVNIYS---------------AYIDNFLN-AKDA 621
AkllllkknLvsiPeelkdeflamlkktvkaaellaeaieeLekllesaf
++++k e ++ fl++l ++ + + a+ L+
gi|2224615 622 ---VRVAK-------EARPAFLKFLEQSMRE-NKEKQALSDLM------I 654
sgkEvkkardivkeieelEdeiDqlqrkllkklFsaYredainpkdflil
+ v+ i + E l k+l+ + ++ d +l
gi|2224615 655 K---------PVQRIPRYE--------LLVKDLLK---HTPEDHPDHPLL 684
leiieklgnvSDraEDaadrisiillk<-*
le +++ v+ r+ + + +++
gi|2224615 685 LEAQRNIKQVAERINK-----GVRSAE 706
SpoA: domain 1 of 1, from 645 to 711: score -25.4, E = 87
*->llalLmdipvdlvvelGrteltlreLlrLqpGsVieLdklagdpgvt
+ + L+d+ ++ v ++ r+el +++Ll+ +p + + ++
gi|2224615 645 EKQALSDLMIKPVQRIPRYELLVKDLLKHTPED----HPDHPLL--- 684
VdilvngrligkGelvvvgdnlGVrIteiiesk<-*
++ n + ++ ++++ GVr e e++
gi|2224615 685 LEAQRNIKQVA----ERINK--GVRSAEEAERH 711
Gastrin: domain 1 of 1, from 703 to 712: score 1.1, E = 56
*->RSaEEydyas<-*
RSaEE++ ++
gi|2224615 703 RSAEEAERHA 712
DUF61: domain 1 of 1, from 686 to 794: score -64.4, E = 52
*->kvEKiikkeIealNkHLPrFkRrsLkE......LLkEkePhVtlkDG
+ ik e++N + rs +E +++ + L+E e+h+ +
gi|2224615 686 EAQRNIKQVAERIN----K-GVRSAEEaerharVLQEIEAHIEG--- 724
keHyiKrrELEfLaelldEDeisrLrlPIvlEiesiGeeraIkIrGkvEV
E+L l Lr v+E+ iG++
gi|2224615 725 ---------MEDLQAPLRRF----LRQEMVIEVKAIGGK----------- 750
KVIkkvLGkdeegylEKdelylYkPElklAEiRr...kLPTtTQviFrvs
kd+ ++l d ++ k +Rr++ L T+ vi s
gi|2224615 751 --------KDRSLFLFTDLIVCTTLKRKSGSLRRssmSLYTAASVIDTAS 792
ll<-*
+
gi|2224615 793 KY 794
Translin: domain 1 of 1, from 684 to 839: score -94.7, E = 73
*->ddkREeilKvsReItieSkklIfllqGVHrgsskdeae...erLeka
+l R I + + ++ + + r++ +eae++ +L ++
gi|2224615 684 ------LLEAQRNIKQVAERINKGV----RSA--EEAErhaRVLQEI 718
rekleevKiHqhlaslkkelegedyekFsracstglQEyVEAvaFykyle
+ ++e+ l + ++r ++ QE V v ++
gi|2224615 719 EAHIEGME------DLQAP--------LRRFLR---QEMVIEVKAIGGKK 751
tetLpsfdelnKqLiFtTeilgienKtPssDApDkelgtWRLrinpeDYl
+++L+ f +l i T++ +++
gi|2224615 752 DRSLFLFTDL----IVCTTLKRKS-------------------------- 771
LGvaDltGELrRmaltsvsnGdldeaeriskFmeqlyeeLmeleylPnkv
G LrR + ++ ++ +k + +l e + k+
gi|2224615 772 -------GSLRRSSMSLYTAASVIDTASKYKMLWKLPLEDADI----IKG 810
vseLrkKldvlrqsleKveedcyalkvrgl<-*
s + + + +++ ed+++l + +
gi|2224615 811 ASQATNRENIQK-AISRLDEDLTTLGQMSK 839
DB: domain 1 of 1, from 939 to 1012: score -49.0, E = 64
*->CCesdrkvpeeClskkCsfntysksalnmvvqkFkqlmffkqddsCp
++ ++ +C +l sCp
gi|2224615 939 --KTRSGMQFSCAA----------PTL----------------NSCP 957
lkgkalpemlfCAAqgrDHtdCClrn....GVttPqTlaGkkCLtfCdqs
+ pe++ C ++g C l+ + +++V + C + C+++
gi|2224615 958 E---PSPEVWVCNSDGYVGQVCLLSLraepDVEA--------CIAVCSAR 996
pgPRRFWfvtqldksYvpCldrfesIk.qCFy<-*
++ C++ + ++C++
gi|2224615 997 -----------IL-----CIGAVPGLQpRCHR 1012
Keratin_B2: domain 1 of 1, from 918 to 1029: score -91.0, E = 28
*->qtScCGfptCStlgtrPsCGsscCQPsCCeSCCQpsCcqpSCCqPtc
+ S+ + c+ P + P
gi|2224615 918 -----RK-LASSKS--------CLDP---------EFLKAI---PIM 938
sqtscCqPtcfqssCCrPsCcqTSCCqPtCcqsssCqtgCgigGsiGyGQ
+ s q+ sC P+ C P+ + ++ g GQ
gi|2224615 939 KTRSGMQF-----SCAAPTLNS--CPEPSPEVWVCNSDGY-------VGQ 974
eGsSGAvScrirWCRPdCrvegtClPpC..CvvsCtaPTCCqpvsaQasC
+ C + P ++ C+ C a + a
gi|2224615 975 V----------------CLLSLRAEPDVeaCIAVCSAR----ILCIGAV- 1003
CRPsCqPyCgqsCCRPaCccsvtCtrTccePc<-*
P qP C + P+ + ++ T eP
gi|2224615 1004 --PGLQPRCH-REPPPSLRSPP---ETAPEPA 1029
//
Start with PfamFrag (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/PfamFrag
Sequence file: tem4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGEF RhoGEF domain 154.0 5.5e-44 1
SH2 Src homology domain 2 4.3 3.3 1
WD40 WD domain, G-beta repeat 2.5 85 1
UreD UreD urease accessory protein 2.2 19 1
NGF Nerve growth factor family 2.1 19 1
PPR PPR repeat 1.9 87 1
Gastrin Gastrin/cholecystokinin family 1.1 56 1
DX DX module 0.5 49 1
Ran_BP1 RanBP1 domain. 0.4 73 1
Ribosomal_S28e Ribosomal protein S28e 0.4 77 1
Lambda_CIII Lambda Phage CIII 0.4 92 1
HECT HECT-domain (ubiquitin-transferase). 0.0 53 1
Sua5_yciO_yrdC SUA5/yciO/yrdC family -0.1 1e+02 1
tRNA-synt_1d tRNA synthetases class I (R) -0.3 22 1
lig_chan Ligand-gated ion channel -0.5 99 1
COLFI Fibrillar collagen C-terminal domain -1.7 78 1
STAT STAT protein -2.8 79 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PPR 1/1 39 58 .. 16 35 .] 1.9 87
NGF 1/1 276 285 .. 1 10 [. 2.1 19
Sua5_yciO_yrdC 1/1 358 368 .. 179 191 .] -0.1 1e+02
COLFI 1/1 359 376 .. 1 15 [. -1.7 78
STAT 1/1 452 461 .. 616 625 .] -2.8 79
SH2 1/1 561 571 .. 69 79 .] 4.3 3.3
UreD 1/1 569 583 .. 171 185 .] 2.2 19
tRNA-synt_1d 1/1 646 660 .. 595 609 .] -0.3 22
RhoGEF 1/1 517 700 .. 1 207 [] 154.0 5.5e-44
Gastrin 1/1 703 712 .. 117 126 .] 1.1 56
Ribosomal_S28e 1/1 707 716 .. 62 71 .] 0.4 77
Ran_BP1 1/1 909 919 .. 117 127 .] 0.4 73
lig_chan 1/1 960 966 .. 1 7 [. -0.5 99
Lambda_CIII 1/1 1055 1063 .. 1 9 [. 0.4 92
HECT 1/1 1172 1190 .. 104 122 .. 0.0 53
WD40 1/1 1217 1244 .. 7 36 .] 2.5 85
DX 1/1 1329 1335 .. 95 101 .] 0.5 49
Alignments of top-scoring domains:
PPR: domain 1 of 1, from 39 to 58: score 1.9, E = 87
*->leeAlelfeeMkekGikPdv<-*
++eA ++fe+++++G d+
gi|2224615 39 VQEARQVFEKIQRMGAQQDD 58
NGF: domain 1 of 1, from 276 to 285: score 2.1, E = 19
*->epvsrRGElS<-*
+++srRGEl+
gi|2224615 276 SDPSRRGELA 285
Sua5_yciO_yrdC: domain 1 of 1, from 358 to 368: score -0.1, E = 1e+02
*->dltddtpvvlRrG<-*
d++ p+++RrG
gi|2224615 358 DIL--SPRLIRRG 368
COLFI: domain 1 of 1, from 359 to 376: score -1.7, E = 78
*->lksP....eGksrknPARt<-*
++sP+ + G s+k PAR+
gi|2224615 359 ILSPrlirRG-SKKRPARS 376
STAT: domain 1 of 1, from 452 to 461: score -2.8, E = 79
*->DLiKkHllpl<-*
D++K ++l l
gi|2224615 452 DVTKQYMLNL 461
SH2: domain 1 of 1, from 561 to 571: score 4.3, E = 3.3
*->FssLpeLvehY<-*
F+ +peL eh+
gi|2224615 561 FDQIPELLEHH 571
UreD: domain 1 of 1, from 569 to 583: score 2.2, E = 19
*->vadeallkqlrelle<-*
+++e +l+q+r++++
gi|2224615 569 EHHEQFLEQVRHCMQ 583
tRNA-synt_1d: domain 1 of 1, from 646 to 660: score -0.3, E = 22
*->angLdlLGistverM<-*
+++L+ L i++v+r
gi|2224615 646 KQALSDLMIKPVQRI 660
RhoGEF: domain 1 of 1, from 517 to 700: score 154.0, E = 5.5e-44
*->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
v+ ll TE Yv++L++l ++ym+pL++++ s + +p ++ iF
gi|2224615 517 VAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV--LCDPSLVDEIF 561
sNiediyefhreFLkssLearisssqfedlDekkiepsaprlGdlFlkl.
i++++e h +FL +++++ ++ +G+l+ ++
gi|2224615 562 DQIPELLEHHEQFLE-QVRHCMQTW-----------HAQQKVGALLVQSf 599
.kepflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
+k+ ++Y +Y++n+ +A++ ++ ++++p+F +fl++ + + n++
gi|2224615 600 sKDVLVNIYSAYIDNFLNAKDAVRV--AKEARPAFLKFLEQSMRE-NKE- 645
kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkal
k L++L++kPvqRi+rY+LL+k+LLkhtpe d+pd+++L +a+
gi|2224615 646 -----KQALSDLMIKPVQRIPRYELLVKDLLKHTPE--DHPDHPLLLEAQ 688
dllqdlaksiNe<-*
++++ +a++iN+
gi|2224615 689 RNIKQVAERINK 700
Gastrin: domain 1 of 1, from 703 to 712: score 1.1, E = 56
*->RSaEEydyas<-*
RSaEE++ ++
gi|2224615 703 RSAEEAERHA 712
Ribosomal_S28e: domain 1 of 1, from 707 to 716: score 0.4, E = 77
*->EsEREARrLr<-*
E ER AR L
gi|2224615 707 EAERHARVLQ 716
Ran_BP1: domain 1 of 1, from 909 to 919: score 0.4, E = 73
*->FKkkFEeaqke<-*
F ++F+ea+++
gi|2224615 909 FEQAFDEAKRK 919
lig_chan: domain 1 of 1, from 960 to 966: score -0.5, E = 99
*->SseiWmm<-*
S+e+W++
gi|2224615 960 SPEVWVC 966
Lambda_CIII: domain 1 of 1, from 1055 to 1063: score 0.4, E = 92
*->MhfaiAGsg<-*
+h+ iAGsg
gi|2224615 1055 LHISIAGSG 1063
HECT: domain 1 of 1, from 1172 to 1190: score 0.0, E = 53
*->sfhDlesvDpelYnsLiki<-*
s++Dl svDpe Y+s +++
gi|2224615 1172 SLEDLLSVDPEAYQSSVWL 1190
WD40: domain 1 of 1, from 1217 to 1244: score 2.5, E = 85
*->hsssvtslafdpdggllatgsaDgtvriwd<-*
h +svt++ + ++ +++++ a+g + +++
gi|2224615 1217 HAASVTCILYLNN--QVFVSLANGELVVYQ 1244
DX: domain 1 of 1, from 1329 to 1335: score 0.5, E = 49
*->aeCyedP<-*
++C+++P
gi|2224615 1329 HVCLYHP 1335
//
Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib
Sequence file: tem4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Prosite
---------------------------------------------------------
| ppsearch (c) 1994 EMBL Data Library |
| based on MacPattern (c) 1990-1994 R. Fuchs |
---------------------------------------------------------
PROSITE pattern search started: Wed Oct 11 20:41:38 2000
Sequence file: tem4
----------------------------------------
Sequence gi|2224615|dbj|BAA20795.1| (1510 residues):
Matching pattern PS00004 CAMP_PHOSPHO_SITE:
271: KKKS
366: RRGS
768: KRKS
775: RRSS
1161: RRSS
1209: RRNS
Total matches: 6
Matching pattern PS00005 PKC_PHOSPHO_SITE:
211: SPK
279: SRR
332: SER
361: SPR
369: SKK
400: SSR
531: SLR
639: SMR
766: TLK
773: SLR
815: TNR
867: SEK
922: SSK
979: SLR
994: SAR
1017: SLR
1118: SSK
1205: SIR
1212: SMK
1306: SSR
1323: TLK
Total matches: 21
Matching pattern PS00006 CK2_PHOSPHO_SITE:
14: SSSE
79: SQEE
84: SGPE
89: SLTD
170: SNGE
180: SLSD
193: TSEE
220: SAMD
274: SLSD
307: SSSE
377: SHQE
449: SLED
520: TLLD
527: SYVE
555: SLVD
639: SMRE
674: TPED
704: SAEE
786: SVID
815: TNRE
825: SRLD
850: SLDD
881: TKLE
888: TRPE
925: SCLD
955: SCPE
1020: SPPE
1024: TAPE
1045: TLAE
1062: SGLE
1084: SDSD
1086: SDDE
1118: SSKE
1127: TSSE
1128: SSEE
1129: SEEE
1153: SPMD
1172: SLED
1205: SIRD
1445: TGPE
1475: SGGD
1491: SSSE
Total matches: 42
Matching pattern PS00008 MYRISTYL:
108: GLGTTG
131: GTEDSL
163: GSGGSE
166: GSEFSN
215: GLPATS
225: GLTSGH
236: GSEESK
324: GATRSR
701: GVRSAE
810: GASQAT
943: GMQFSC
1001: GAVPGL
1069: GLGEGD
1096: GTLQSQ
1147: GGPCGT
1191: GTEDGC
1265: GSPITK
1303: GQDSSR
1319: GVWVTL
1384: GTSAGV
1388: GVVLTM
1411: GLGQGH
1413: GQGHTG
1488: GGGSSS
1489: GGSSSE
Total matches: 25
Matching pattern PS00009 AMIDATION:
748: GGKK
Total matches: 1
Total no of hits in this sequence: 95
========================================
1314 pattern(s) searched in 1 sequence(s), 1510 residues.
Total no of hits in all sequences: 95.
Search time: 00:00 min
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Profile Search
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with motif search against own library
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
SeqTyp=2 : PROTEIN search;
>APC D-Box is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 1510 units
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~
Start with HMM-search search against own library
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm.lib
Sequence file: tem4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm-f.lib
Sequence file: tem4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
L. Aravind's signalling DB
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
(1510 letters)
Searching..................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
RHOGAP RHO-type GTPase GTP hydrolysis activating protein 172 2e-45
RHOGEF RHO-type GTPase GDP exchange factor 135 3e-34
SNARE Alpha helical domains which are involved in vesicle fu... 25 0.79
HSF Heat Shock Factor Domain (Winged helix type DNA binding ... 25 0.97
POZ Pox virus Zinc finger domain (Also called BTB domain; a... 24 1.2
ARR Arrestin domain 24 1.4
KELCH Kelch repeat- beta propeller like domain 23 1.9
PAS domain (Per-Arnt-Sim Domain (A ligand binding and dimeri... 23 2.4
SEC7 Sec7 like GDP exchange factor for ARF like GTPases 23 2.8
PH Pleckstrin homology domain (lipid and protein interactio... 23 3.3
PUM Pumilio repeat RNA binding domain 23 3.3
S1 S1 RNA binding domain 22 5.0
CNMP Cyclic nucleotide binding domain 22 6.4
HECT A ubiquitin conjugating enzyme domain 22 7.5
MIZFIN MIZ type Cysteine zinc DNA binding domain 21 9.2
>RHOGAP RHO-type GTPase GTP hydrolysis activating protein
Length = 194
Score = 172 bits (434), Expect = 2e-45
Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 16/196 (8%)
Query: 517 VAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSVLCDPSLVDEIF--DQIPELLEHHEQF 574
V L+ TE +V +L+ + + + + + +P +V +F + H
Sbjct: 1 VMYELIQTELHHVRTLKIMTRLFRTGMLEEL---HLEPGVVQGLFPLRGRASVTSIHASS 57
Query: 575 LEQVR-------HCMQTWHAQQKVGALLVQSFSK---DVLVNIYSAYIDNFLNAKDAVRV 624
++G LL+ FS + + YS + A +
Sbjct: 58 ASYQNADARPCALGSTGNFVIPRLGDLLISQFSGGSAEQMCKTYSEFCSRHSKALKFYKE 117
Query: 625 AKEARPAFLKFLEQSMRE-NKEKQALSDLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPL 683
F +F+ + R ++ + + ++ QRI +Y LL+ +L+H+ +
Sbjct: 118 LYARDKRFQQFIRKVTRPAVLKRHGVQECILLVTQRITKYPLLISRILQHSHGIEEERQD 177
Query: 684 LLEAQRNIKQVAERIN 699
L A +K++ ++
Sbjct: 178 LTTALGLVKELLSNVD 193
>RHOGEF RHO-type GTPase GDP exchange factor
Length = 176
Score = 135 bits (339), Expect = 3e-34
Identities = 45/162 (27%), Positives = 81/162 (49%), Gaps = 15/162 (9%)
Query: 517 VAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSVLCDPSLVDE---IFDQIPELLE-HHE 572
V L+ TE+ YV L T++ GY + PE L P L ++ +F + E+ E H++
Sbjct: 1 VLNELIQTERVYVRELYTVLLGYRAEMDNPEMFDLMPPLLRNKKDILFGNMAEIYEFHND 60
Query: 573 QFLEQVRHCMQTWHAQQKVGALLVQSFSKDVLVNIYSAYIDNFLNAKDAVRVAKEARPAF 632
FL + +C ++VG ++ +Y+ Y N ++ R + +
Sbjct: 61 IFLSSLENCAHAP---ERVGPCFLERKD---DFQMYAKYCQNKPRSETIWR-----KYSE 109
Query: 633 LKFLEQSMRENKEKQALSDLMIKPVQRIPRYELLVKDLLKHT 674
F ++ R+ K + L ++KPVQRI +Y+LL+K+LLK++
Sbjct: 110 CAFFQECQRKLKHRLRLDSYLLKPVQRITKYQLLLKELLKYS 151
>SNARE Alpha helical domains which are involved in vesicle fusion
Length = 254
Score = 24.9 bits (54), Expect = 0.79
Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 15/88 (17%)
Query: 789 DTASKYKMLWKLPLEDADIIKGASQATNRENIQKAISRLDEDLTTLGQMSKLSESLGFPH 848
+ + K + P + I N ++Q I S
Sbjct: 117 NFIQRTKQRYNNPRSLSTKI-------NLSDMQMEIKL-RPPYQIPMCE---LGSA---- 161
Query: 849 QSLDDALRDLSAAMHRDLSEKQALCYAL 876
+ A + S Q L A
Sbjct: 162 NGVTSAFSVDCKGAGKISSAHQRLEPAT 189
>HSF Heat Shock Factor Domain (Winged helix type DNA binding domain)
Length = 112
Score = 24.5 bits (53), Expect = 0.97
Identities = 6/27 (22%), Positives = 10/27 (36%)
Query: 899 EFPHPDARLGFEQAFDEAKRKLASSKS 925
EF + G + KR+ +S
Sbjct: 73 EFANEGFLGGQKHLLKTIKRRRNVGQS 99
>POZ Pox virus Zinc finger domain (Also called BTB domain; a protein-protein interaction domain)
Length = 229
Score = 24.4 bits (52), Expect = 1.2
Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 507 SKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSVLCDPSLVDEI-FDQIP 565
S + L+D + ++ ++ L Q + L+ E + I
Sbjct: 58 SGRMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEI---KELMAEAKYYLIQ 114
Query: 566 ELLEHHEQFLEQVRHCMQT------WHAQQKVGALLVQSFSKDVLVNIYSAYIDNFLNAK 619
L+ + L+ + Q + ++ L+ S K V+ +Y+ + +
Sbjct: 115 GLVNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESST-KPVVKLLYNRSNNKYSYTS 173
Query: 620 DAVRVAKEARPAFLKFLEQSMRENKEKQAL 649
++ + F K + + +
Sbjct: 174 NSDDHLLKNIELFDKLSLRFNGRVLFIKDV 203
>ARR Arrestin domain
Length = 454
Score = 24.1 bits (52), Expect = 1.4
Identities = 7/30 (23%), Positives = 15/30 (49%)
Query: 875 ALSFPPTKLELCATRPEGTDSYIFEFPHPD 904
++S P ++L+ R G +++ F F
Sbjct: 117 SISRPLSRLQERLKRKLGANAFPFWFEVAP 146
Score = 21.4 bits (45), Expect = 8.7
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 997 ILCIGAVPGLQPRCHREPPPSLRSPPETAP 1026
L P P PS+ + + P
Sbjct: 376 TLTHSK-PPESPERTDRGLPSIEATNGSEP 404
>KELCH Kelch repeat- beta propeller like domain
Length = 319
Score = 23.4 bits (50), Expect = 1.9
Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREA 1247
+ V Y ++ + + + L NQ+F+ + E + +
Sbjct: 183 SVSHDKLPKVQCYDQCENRWTVPATCPQPWRYTAAAV--LGNQIFIMGGDTE---FSACS 237
Query: 1248 GHFWDPQNFKSVTLGTQGSPIT--KMVSVGGRL--WCGCQ-----NRVLVLSPDTLQLEH 1298
+ ++ + ++ +G + V+ G +L G + P
Sbjct: 238 AYKFNSETYQWTKVGDVTAKRMSCHAVASGNKLYVVGGYFGIQRCKTLDCYDPTLDVWNS 297
Query: 1299 M 1299
+
Sbjct: 298 I 298
>PAS domain (Per-Arnt-Sim Domain (A ligand binding and dimerization domain))
Length = 117
Score = 23.4 bits (50), Expect = 2.4
Identities = 7/88 (7%), Positives = 22/88 (24%), Gaps = 9/88 (10%)
Query: 695 AERINKGVRSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLR--QEMVIEVKAI----G 748
E + + ++ ++ E ++ + + A+
Sbjct: 30 QELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVRE 89
Query: 749 GKKDRSLFLFTDLIVCTTLKRKSGSLRR 776
GK + + T T + +
Sbjct: 90 GKISGYMSIRTRA---TDEEIAAVEPLY 114
>SEC7 Sec7 like GDP exchange factor for ARF like GTPases
Length = 192
Score = 22.9 bits (49), Expect = 2.8
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 655 KPVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINKGVRSAEEAERHARV 714
KP + + L+ + + TP H LL + + + E + + + + V
Sbjct: 18 KPEKGVQY--LIERGFVPDTPVGVA-HFLLQRKGLSRQMIGEFL-----GNRQKQFNRDV 69
Query: 715 LQEIEAHIE--GMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTD 760
L + ++ ME +A LR+F I V+ K +R + F+
Sbjct: 70 LDCVVDEMDFSTMELDEA-LRKFQ---AHIRVQGEAQKVERLIEAFSQ 113
Score = 21.3 bits (45), Expect = 7.9
Identities = 5/21 (23%), Positives = 10/21 (46%)
Query: 1186 SSVWLGTEDGCVHVYQSSDSI 1206
S + G V +++ D+I
Sbjct: 112 SQRYCICNPGVVRQFRNPDTI 132
>PH Pleckstrin homology domain (lipid and protein interaction domain)
Length = 138
Score = 22.7 bits (48), Expect = 3.3
Identities = 10/103 (9%), Positives = 28/103 (26%), Gaps = 4/103 (3%)
Query: 722 IEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTDLIVCTTLKRKSGSLRRSSMSL 781
+G + ++ + K R L + + + + R + L
Sbjct: 3 DDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYF--EYTTDKEPRGIIPL 60
Query: 782 YTAASVIDTASKYKMLWKL--PLEDADIIKGASQATNRENIQK 822
+ + ++L P +IK + ++
Sbjct: 61 ENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEG 103
>PUM Pumilio repeat RNA binding domain
Length = 337
Score = 22.9 bits (49), Expect = 3.3
Identities = 11/34 (32%), Positives = 15/34 (43%)
Query: 797 LWKLPLEDADIIKGASQATNRENIQKAISRLDED 830
+ LPL D D IK A+ +QK + E
Sbjct: 4 ISALPLRDLDYIKLATDQFGCRFLQKKLETPSES 37
>S1 S1 RNA binding domain
Length = 305
Score = 22.2 bits (47), Expect = 5.0
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 703 RSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKD 752
+A + A+ L + + H E + + + + + + ++ GGK
Sbjct: 7 SAAFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVD---FGGKSP 53
Score = 21.4 bits (45), Expect = 9.5
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 660 IPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINKGVRSAEEAE 709
IPR L+ KD + + Q ++ R ++AE
Sbjct: 142 IPRSHLMHKDNMDALVGQ--VLKAHILE---ANQDNNKLVLTQRRIQQAE 186
>CNMP Cyclic nucleotide binding domain
Length = 118
Score = 21.7 bits (46), Expect = 6.4
Identities = 10/59 (16%), Positives = 16/59 (26%), Gaps = 2/59 (3%)
Query: 1126 TTSSEEEQEPGFLPLSGSFGPGG--PCGTSPMDGRALRRSSHGSFTRGSLEDLLSVDPE 1182
+ EQ L G G P R R S ++++ D +
Sbjct: 50 ASKGVSEQVLAKLGPGSMAGEIGVVFNIPQPFTVRTRRLSQVIRIGHHKFKEMVQSDND 108
>HECT A ubiquitin conjugating enzyme domain
Length = 255
Score = 21.7 bits (46), Expect = 7.5
Identities = 7/19 (36%), Positives = 10/19 (51%)
Query: 1172 SLEDLLSVDPEAYQSSVWL 1190
+LEDL VD Q+ +
Sbjct: 116 TLEDLEEVDLLYVQTLNSI 134
>MIZFIN MIZ type Cysteine zinc DNA binding domain
Length = 172
Score = 21.1 bits (44), Expect = 9.2
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 1081 PFDSDSDDESSPSPSGTLQSQASRSTISSSFGNEETPSSKEA-----TAETTSSEEEQEP 1135
P + S T +S + S S K+ T E++S EEE P
Sbjct: 91 PMRPKKEAMKVTSQPCTKVESSSVFSKPCSVTVASDASKKKIDVIDLTIESSSDEEEDPP 150
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 105
Number of sequences better than 10.0: 15
Number of calls to ALIGN: 18
Length of query: 1510
Total length of test sequences: 20182
Effective length of test sequences: 16136.0
Effective search space size: 23740223.4
Initial X dropoff for ALIGN: 25.0 bits
Y. Wolf's SCOP PSSM
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= gi|2224615|dbj|BAA20795.1| KIAA0337 [Homo sapiens]
(1510 letters)
Searching.................................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
gi|2746866 [80..273] 7-bladed beta-propeller 51 1e-07
gi|1556399 [647..916] 7-bladed beta-propeller 48 1e-06
gi|2832331 [157..459] 7-bladed beta-propeller 47 2e-06
gi|2137729 [37..266] 7-bladed beta-propeller 46 5e-06
gi|2622601 [25..254] 7-bladed beta-propeller 43 3e-05
gi|2102675 [28..258] 7-bladed beta-propeller 43 4e-05
gi|1001440 [1028..1666] 7-bladed beta-propeller 43 4e-05
gi|549752 [8..246] 7-bladed beta-propeller 42 8e-05
gi|2815132 [909..1205] 7-bladed beta-propeller 42 8e-05
gi|1181604 [175..454] 7-bladed beta-propeller 40 2e-04
gi|1001939 [228..429] 7-bladed beta-propeller 40 3e-04
gi|1086900 [26..235] 7-bladed beta-propeller 37 0.002
gi|586529 [222..473] 7-bladed beta-propeller 37 0.002
gi|1363708 [373..683] 7-bladed beta-propeller 36 0.004
gi|2104446 [1048..1249] 7-bladed beta-propeller 36 0.004
gi|452523 [41..225] 7-bladed beta-propeller 35 0.007
gi|1495018 [84..244] 7-bladed beta-propeller 35 0.008
gi|2131405 [8..233] 7-bladed beta-propeller 35 0.011
gi|2736365 [143..399] 7-bladed beta-propeller 35 0.012
gi|2494897 [186..459] 7-bladed beta-propeller 32 0.059
gi|2662028 [241..421] 7-bladed beta-propeller 32 0.059
gi|2129405 [8..201] S-adenosyl-L-methionine-dependent methyl... 32 0.075
gi|1066956 [784..993] 7-bladed beta-propeller 31 0.15
gi|549660 [99..278] 7-bladed beta-propeller 29 0.68
gi|4006 [276..439] P-loop containing nucleotide triphosphate... 28 0.90
gi|135122 [4..325] Class II aaRS and biotin synthetases 28 1.0
gi|123030 [1..120] Four-helical up-and-down bundle 28 1.2
gi|121663 [123..314] ATP-grasp 28 1.3
gi|433311 [68..521] DNA/RNA polymerases 28 1.5
gi|417569 [3..336] Aspartate/ornithine carbamoyltransferase,... 27 2.1
gi|1360139 [98..407] 7-bladed beta-propeller 27 2.6
gi|1568595 [1..151] Ribosomal protein L9 26 3.1
gi|2117634 [147..843] Lipoxigenase, C-terminal domain 26 4.0
gi|125988 [12..184] EF Hand-like 26 4.9
gi|2811252 [82..382] Periplasmic binding protein-like II 25 6.2
gi|153548 [125..455] beta-Lactamase/D-ala carboxypeptidase 26 6.4
gi|2497466 [46..370] Purine nucleoside hydrolase 25 7.8
gi|2463100 [37..265] Trypsin-like serine proteases 25 7.9
gi|1938424 [576..818] Acyl-CoA dehydrogenase (flavoprotein),... 25 8.2
gi|478310 [306..563] beta/alpha (TIM)-barrel 25 8.6
gi|1420859 [36..611] Periplasmic binding protein-like II 25 9.0
gi|68234 [34..414] Citrate synthase 25 9.4
gi|544020 [86..429] Nitrogenase iron-molybdenum protein, alp... 25 9.7
>gi|2746866 [80..273] 7-bladed beta-propeller
Length = 194
Score = 51.2 bits (121), Expect = 1e-07
Identities = 28/190 (14%), Positives = 56/190 (28%), Gaps = 25/190 (13%)
Query: 1191 GTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHF 1250
+G + + + D N + H VT ++ +N F+S + V
Sbjct: 10 AGRNGTLTHWMFNHEPGDLPNVVFDGHKFGVTGVVSINENQFMSGSRDCSV-------KI 62
Query: 1251 WDPQNFKSV-TLGTQGSPITKMVSVGGRLWCGCQNR-VLVLSPDTLQLEHMFYVGQDSSR 1308
WD ++ K V T + +T M G + +++ V + P + F +
Sbjct: 63 WDLESAKCVRTQTINRNLVTHMAYNGNLVAQTSEDKSVRLWDPRNASVVTEFPRKRHIQM 122
Query: 1309 CVA--------------CMVDSSLGVWVTLKGS-AHVCLYHPDTFEQLAEVDVTPPVHRM 1353
+ + + H L+ V + +
Sbjct: 123 FCEFDGANRFFSCSNGFNNDGCEITSYDVRNPRQSREARGHEGNVTSLSIVQMDQTKRLL 182
Query: 1354 LAGS-DAIIR 1362
+ S D IR
Sbjct: 183 ASVSADRQIR 192
>gi|1556399 [647..916] 7-bladed beta-propeller
Length = 270
Score = 48.1 bits (113), Expect = 1e-06
Identities = 21/163 (12%), Positives = 48/163 (28%), Gaps = 10/163 (6%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREA 1247
V + D V+ Y + R H +V+ I + +N+++ + + + V+
Sbjct: 41 VITSSWDNNVYFYSIAFGRRQDTLMG---HDDAVSKICWHDNRLYSASWDSTVKVWSGVP 97
Query: 1248 GHFWDPQNFKSVTLGTQG--SPITKM-VSVGGRL--WCGCQNRVLVLSPDTLQLEHMFYV 1302
+ L + + ++ L + V + T L H
Sbjct: 98 AEMPGTKRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPC 157
Query: 1303 GQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVD 1345
A DS + G + + T ++ +
Sbjct: 158 HSGIVCDTAFSPDSRHVLSTGTDGC--LNVIDVQTGMLISSMT 198
>gi|2832331 [157..459] 7-bladed beta-propeller
Length = 303
Score = 47.4 bits (111), Expect = 2e-06
Identities = 32/254 (12%), Positives = 77/254 (29%), Gaps = 34/254 (13%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYL--NNQVFVSLANGELVVYQR 1245
+ G + ++++ + H +V+ + + +Q++ + + + V
Sbjct: 58 LASGDRSKLILIWEAQSCQHLYTFTG---HRDAVSGLAFRRGTHQLYSTSHDRSVKV--- 111
Query: 1246 EAGHFWDPQNFKSV-TLGTQGSPIT--KMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYV 1302
W+ V TL + +S + G ++ + + + + +FY
Sbjct: 112 -----WNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYG 166
Query: 1303 GQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPVHRMLAGSDAIIR 1362
Q S C+ + + + V+ V L+ LA +
Sbjct: 167 HQGSIDCIHLINEEHM---VSGADDGSVALWGLSKKRPLALQREAHGLRGE------PGL 217
Query: 1363 QHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTVSCPRAPLSPTGLGQGHTGHVRF 1422
+ + A L+ +L+ G+ + V G + L G +
Sbjct: 218 EQPFWISSV-AALLNTDLVATGSHSSCVRLWQCGEGF---RQLDLLCD---IPLVGFINS 270
Query: 1423 LAAVQLPDGFNLLC 1436
L G L+
Sbjct: 271 LKF--SSSGDFLVA 282
>gi|2137729 [37..266] 7-bladed beta-propeller
Length = 230
Score = 45.7 bits (107), Expect = 5e-06
Identities = 21/195 (10%), Positives = 50/195 (24%), Gaps = 31/195 (15%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYL--NNQVFVSLANGELVVYQR 1245
+ + G V S ++L TC+ + + N + +
Sbjct: 13 LVTASSSGDKIVVSSCKC--KPVPLLELAEGQKQTCVDLNSTSMYLASGGLNNTVNI--- 67
Query: 1246 EAGHFWDPQNFKSV-TLGTQGSPITKM--VSVGGRLWCGCQNRVL-------------VL 1289
WD ++ + +L +T + + G + +
Sbjct: 68 -----WDLKSKRLHRSLKDHKCEVTCVAYNWNDCYIASGSLSGEIILHSVTTNTSSTPFG 122
Query: 1290 SPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPP 1349
+ H+ Y S + + + +W S++ + +P
Sbjct: 123 HGSKQPIRHIKYSLFRKSLLGSVSDNGVVTLWDVNSQSSYHTFDSTHKAPASG-ICFSPV 181
Query: 1350 VHRMLA--GSDAIIR 1362
+ G D I
Sbjct: 182 NELLFVTIGLDKRII 196
>gi|2622601 [25..254] 7-bladed beta-propeller
Length = 230
Score = 43.3 bits (101), Expect = 3e-05
Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 19/157 (12%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILYLNNQVFVSLANGELVVYQRE 1246
V++G+ DG ++ K + + + V++ + +
Sbjct: 87 VFVGSWDGYLYAI----DTDTGDLEWKFKTGNRIESSPAVSGDTVYIGSDDCRVYA---- 138
Query: 1247 AGHFWDPQNFKSV-TLGTQGSPITKMVSVGGRLWCGCQ-NRVLVLSPDTLQLEHMFYVGQ 1304
D + T + + + V G L+ G +V LS +
Sbjct: 139 ----VDRDDGSKKWEFYTGDAVKSSPLPVNGTLYVGSFNGKVYALSESDGNEVWSYT--S 192
Query: 1305 DSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQL 1341
+ + + + G+ + +
Sbjct: 193 GDAIRSSPAFWNGTVYVGSDDGN--IYALSESDGNVI 227
>gi|2102675 [28..258] 7-bladed beta-propeller
Length = 231
Score = 43.0 bits (100), Expect = 4e-05
Identities = 16/165 (9%), Positives = 42/165 (24%), Gaps = 20/165 (12%)
Query: 1191 GTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILYLNNQVFVSLANGELVVYQREAGH 1249
DG + ++ + + + + + V A +
Sbjct: 4 CGSDGDIRIW-------ESLDDDDPKSISIGEKAYSFALKNGKVVTAASNNAIQ------ 50
Query: 1250 FWDPQNFKSV-TLGTQGSPITKMV--SVGGRLWCGCQNRVL-VLSPDTLQLEHMFYVGQD 1305
+ + L + +V + G R+ G + ++ VL + +
Sbjct: 51 LHTFPDGEPDGILTRFTTNANHVVFNTDGTRIAAGSGDFLVKVLQVEDSTQQKTLRGHSA 110
Query: 1306 SSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPV 1350
V+ + GS V ++ A + +
Sbjct: 111 PVLSVSFDPKDIYLASASCDGS--VRIWKISDQTCEAVLPLLEKC 153
>gi|1001440 [1028..1666] 7-bladed beta-propeller
Length = 639
Score = 42.5 bits (98), Expect = 4e-05
Identities = 26/205 (12%), Positives = 46/205 (21%), Gaps = 18/205 (8%)
Query: 1143 SFGP-GGPCGTSPMDGRALRRSSHG---SFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVH 1198
F G T+ D A G RG + A + + D
Sbjct: 445 EFSADGQFIVTASDDNTAGIWEIVGREVGICRGHEGPVYFAQFSADSRYILTASVDNTAR 504
Query: 1199 VYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHFWDPQNFKS 1258
++ R H + V + ++ + + WD
Sbjct: 505 IW----DFLGRPLLTLAGHQSIVYQARFSPEGNLIATVSADHTA------RLWDRSGKTV 554
Query: 1259 VTLGTQGSPITKMV--SVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDS 1316
L + + G L + L + + + R D
Sbjct: 555 AVLYGHQGLVGTVDWSPDGQMLVTASNDGTARLWDLSGRELLTLEGHGNWVRSAEFSPDG 614
Query: 1317 SLGVWVTLKGSAHVCLYHPDTFEQL 1341
+T L+ T QL
Sbjct: 615 RW--VLTSSADGTAKLWPVKTLPQL 637
Score = 41.7 bits (96), Expect = 8e-05
Identities = 20/234 (8%), Positives = 55/234 (22%), Gaps = 12/234 (5%)
Query: 1171 GSLEDLLSVDPEAYQSSVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQ 1230
G + + + + + + + DG ++ + R + H + V + +
Sbjct: 108 GHADWVRNAEFNCHGQILLTASRDGTARLW----DLEGREIGLCQGHTSWVRNAQFSPDG 163
Query: 1231 VFVSLANGELVVYQREAGHFWDPQNFKSVTLGTQGSPITKMV--SVGGRLWCGCQNRVLV 1288
++ + + WD + L + + + G + +
Sbjct: 164 QWIVTCSADGTA------RLWDLSSQCFAVLKGHQNWVNNALWSPDGQHIITSSSDGTAR 217
Query: 1289 LSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTP 1348
+ + + +D V + +A + L
Sbjct: 218 VWSRHGKCLGTLRGHDHNIHGARFSLDGQKIVTYSTDNTARLWTKEGTLLTILRGHQKEV 277
Query: 1349 PVHRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTVSC 1402
A + R + + + G S V G
Sbjct: 278 YDADFSADGRFVFTVSADQTARQWDISQKDTITLTGHSHWVRNAHFNPKGDRLL 331
Score = 29.3 bits (64), Expect = 0.43
Identities = 11/103 (10%), Positives = 31/103 (29%), Gaps = 16/103 (15%)
Query: 1191 GTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNN--QVFVSLANGELVVYQREAG 1248
T +G +++ S ++ H ++T + + + + A+ + +
Sbjct: 5 ATTNGIAYLW----SFHGELINVLRGHQEAITALDWSADGQYFATASADHTVKL------ 54
Query: 1249 HFWDPQNFKSVTLGTQGSPITKMV--SVGGRLWCGCQNRVLVL 1289
W + TL + + L Q+ +
Sbjct: 55 --WQRHGEEVATLRGHEDWVRSVHFSPHHQFLVTSGQDNTARI 95
>gi|549752 [8..246] 7-bladed beta-propeller
Length = 239
Score = 41.9 bits (97), Expect = 8e-05
Identities = 18/188 (9%), Positives = 49/188 (25%), Gaps = 25/188 (13%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREA 1247
+ G +D ++ + + + H +V + + + V + V
Sbjct: 62 LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKV----- 116
Query: 1248 GHFWDPQNFKSVTLGTQGSPITKMV---SVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQ 1304
W + + + ++ + L ++ F
Sbjct: 117 ---WKEGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLW-QNDKVIKTFSGIH 171
Query: 1305 DSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAE----------VDVTPPVHRML 1354
+ V + G +++ + L T + L + + P +
Sbjct: 172 NDV--VRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVS 229
Query: 1355 AGSDAIIR 1362
G D +R
Sbjct: 230 CGEDRTVR 237
>gi|2815132 [909..1205] 7-bladed beta-propeller
Length = 297
Score = 41.6 bits (96), Expect = 8e-05
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 18/190 (9%)
Query: 1152 TSPMDGRA----LRRSSHGSFTRGSLEDLLSVDPEAYQSSVWLGTEDGCVHVYQSSDSIR 1207
T D + S G + + ++ + + V + ED + V+ S
Sbjct: 117 TGSGDFVVQMWDVTNGKCISRMGGLMAPVSTLAITSNDAFVVVACEDETLKVF----STV 172
Query: 1208 DRRNSMKLQ-HAASVTCILYL-NNQVFVSLANGELVVYQREAGHFWDPQNFKSVTLGTQG 1265
+ +L H V ++ ++ + ++ Y G V Q
Sbjct: 173 GGQELHELMGHEGKVNSLVCAQDDCQLFAATKSKVFCYDIHNGQ------MIDVLDTAQP 226
Query: 1266 SPITKMVSVGGRLW--CGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVT 1323
PI + + C +V + + + A + +
Sbjct: 227 FPICSLKISSDNYFLISPCGPKVTIWNVTKRNHDAHDVHADKEGFLTAVALSNDDKYAAC 286
Query: 1324 LKGSAHVCLY 1333
+ V L+
Sbjct: 287 GTNNGIVALW 296
Score = 28.4 bits (62), Expect = 0.99
Identities = 14/122 (11%), Positives = 30/122 (24%), Gaps = 16/122 (13%)
Query: 1251 WDPQNFKSV-TLGTQGSPITKM-VSVGGRL--WCGCQNRVLVLSPDTLQLEHMFYVGQDS 1306
+ + + + T + +T + S L V V
Sbjct: 1 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPTMSLTHHTAK 60
Query: 1307 SRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAE----------VDVTPPVHRMLAG 1356
C D + + S + +T E + + +T ++ G
Sbjct: 61 VTCAILTSDDQYLITASADSS--AKMIKLETGEVMRSFNDHTGSVVSLQLTSNNQFLITG 118
Query: 1357 SD 1358
S
Sbjct: 119 SG 120
Score = 26.0 bits (56), Expect = 3.8
Identities = 13/63 (20%), Positives = 23/63 (35%), Gaps = 5/63 (7%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYL--NNQVFVSLANGELVVYQR 1245
+ D V+V+ S S H A VTC + + + + A+ + +
Sbjct: 31 FVSTSFDKTVNVWVFSQSTPTMS---LTHHTAKVTCAILTSDDQYLITASADSSAKMIKL 87
Query: 1246 EAG 1248
E G
Sbjct: 88 ETG 90
>gi|1181604 [175..454] 7-bladed beta-propeller
Length = 280
Score = 40.4 bits (93), Expect = 2e-04
Identities = 17/197 (8%), Positives = 51/197 (25%), Gaps = 27/197 (13%)
Query: 1178 SVDPEAYQSSVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYL--NNQVFVSL 1235
S+ P A+ + +V D + N ++ V I + ++
Sbjct: 1 SLTPIAHIVKFGSAATESHANVTDIHDGLDFSSNDDG-GYSFGVFSIKFSTDGREIVAGT 59
Query: 1236 ANGELVVYQREAGHFWDPQNFKSV-TLGTQGSPITKMV---SVGGRLWCGCQNRVLVL-- 1289
++ + V +D + + + S + + G ++ G + + +
Sbjct: 60 SDESICV--------YDLEADRLSLRISAHESDVNSVCFADESGHLIYSGSDDNLCKVWD 111
Query: 1290 ---SPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAE--- 1343
+ + + + D + + + L+ A
Sbjct: 112 RRCFNAKGKPAGILMGHLEGITFIDSRGDGRYFISNGKDQT--IKLWDIRKMSSNAGGTI 169
Query: 1344 --VDVTPPVHRMLAGSD 1358
+ M +
Sbjct: 170 QSRNSEWDYRWMEYPQE 186
>gi|1001939 [228..429] 7-bladed beta-propeller
Length = 202
Score = 39.9 bits (92), Expect = 3e-04
Identities = 19/186 (10%), Positives = 48/186 (25%), Gaps = 18/186 (9%)
Query: 1191 GTEDGCVHVY--QSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLA-NGELVVYQREA 1247
+ + +H++ + + R L + + + + + N + V+
Sbjct: 9 SSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSR 68
Query: 1248 GHFWDPQNFKSVTLGTQGSPITKM--VSVGGRLWCGCQ-NRVLVLSPDTLQLEHMFYVGQ 1304
Q I+ + CG + + + D + Q
Sbjct: 69 PGRDCEVRATFAKKQGQSGIISCIAFSPSQPLYACGSYGRTLGLYAWDDGSPLALLGGHQ 128
Query: 1305 DSSRCVA-----------CMVDSSLGVWVTLKGSAHVCLY-HPDTFEQLAEVDVTPPVHR 1352
+ D+ L W + + T Q D+ P
Sbjct: 129 GGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTTNQRIYFDLDPSGQF 188
Query: 1353 MLAGSD 1358
+++G+
Sbjct: 189 LVSGNT 194
>gi|1086900 [26..235] 7-bladed beta-propeller
Length = 210
Score = 37.1 bits (85), Expect = 0.002
Identities = 18/163 (11%), Positives = 48/163 (29%), Gaps = 17/163 (10%)
Query: 1176 LLSVDPEAYQSSVWLGTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILY--LNNQVF 1232
+ +V S V+ G+ D + + R R + ++ + +++
Sbjct: 59 VNAVAFNEESSVVFSGSMDCTMQAF----DCRSRSEKPIQIFNESTDGILSIDVNGHEIV 114
Query: 1233 VSLANGELVVYQREAGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLW--CGCQNRVLVLS 1290
A+G + ++ S + + V ++
Sbjct: 115 AGSADGNY--------RVYSIRDGNMTVDYMGDSVNSVSFTPDSNCLLAGVMGGIVRLID 166
Query: 1291 PDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLY 1333
+ +L + Q++ + C V S+ + V +Y
Sbjct: 167 KSSGKLLASYKGHQNTEYKLDCRVLQSIEHVASGSEDGFVYVY 209
>gi|586529 [222..473] 7-bladed beta-propeller
Length = 252
Score = 36.9 bits (84), Expect = 0.002
Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 18/146 (12%)
Query: 1191 GTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILYL--NNQVFVSLANGELVVYQREA 1247
G + VY I ++ + KL H ++ + + N + + +G L +
Sbjct: 114 PGPKGAIFVY----QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI----- 164
Query: 1248 GHFWDPQNFKSV-TLGTQGSPITKM-VSVGGRLWCGCQ-NRVLVLSPDTLQLEHMFYVGQ 1304
W N S + I ++ V + S L + V
Sbjct: 165 ---WHGGNGNSQNSFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG 221
Query: 1305 DSSRCVACMVDSSLGVWVTLKGSAHV 1330
D + G +V
Sbjct: 222 VPIFAGRISQDGQKYAVAFMDGQVNV 247
Score = 28.3 bits (62), Expect = 0.94
Identities = 17/107 (15%), Positives = 36/107 (32%), Gaps = 13/107 (12%)
Query: 1221 VTCILYL--NNQVFVSLANGELVVYQREAGHFWDPQNFKSVTLGTQGSPITKM-VSVGGR 1277
VTC+ + N + + NGEL + W+ L +PI + + G
Sbjct: 2 VTCLAWSHDGNSIVTGVENGELRL--------WNKTGALLNVLNFHRAPIVSVKWNKDGT 53
Query: 1278 --LWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWV 1322
+ +N ++ + + + F + + + S G
Sbjct: 54 HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLG 100
>gi|1363708 [373..683] 7-bladed beta-propeller
Length = 311
Score = 36.1 bits (82), Expect = 0.004
Identities = 17/151 (11%), Positives = 35/151 (22%), Gaps = 21/151 (13%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQ----HAASVTCILYLNNQVFVSLANGELVVY 1243
+ + D V V+ + H V I + + ++ + +
Sbjct: 174 LAISLLDNTVKVF-------FLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIK 226
Query: 1244 QREAGHFWDPQNFKSV-TLGTQGSPITKM-VSVGGRLW--CGCQNRVLVLSPDTLQLEHM 1299
W +L I + + C V + +
Sbjct: 227 ------IWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYWDGEKFECIQK 280
Query: 1300 FYVGQDSSRCVACMVDSSLGVWVTLKGSAHV 1330
Y Q +A D V + S +
Sbjct: 281 LYAHQSEVWALAVATDGGFVVSSSHDHSIRI 311
Score = 36.1 bits (82), Expect = 0.005
Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 27/209 (12%)
Query: 1217 HAASVTCILYLNNQVFVSLANGELVVYQREAGHFWDPQNFKSVTLGTQGSPITKMV--SV 1274
V I ++ ++ A+ + W+ + K + +
Sbjct: 18 QRTDVRSIDISDDNKLLATASNGSL-------KIWNIKTHKCIRTF-ECGYALTCKFLPG 69
Query: 1275 GGRLWCGCQNRVLVL-------SPDTLQLEHMFYVG-----QDSSRCVACMVDSSLGVWV 1322
G + G +N L L DT++ H + D R V D ++ W
Sbjct: 70 GLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWD 129
Query: 1323 TLKGSAHVCLYHPDTFEQLAEVDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCEELLW 1382
++ V L T +R +LL ++
Sbjct: 130 FKVENSLVPGTKNKFLPVLKLHHDTTLELT---DDILCVRVSPDDRYLAISLLDNTVKVF 186
Query: 1383 VGTSAGVVLTMPTSPGTVSCPRAPLSPTG 1411
S L++ V +S
Sbjct: 187 FLDSMKFYLSLYGHKLPVLSID--ISFDS 213
>gi|2104446 [1048..1249] 7-bladed beta-propeller
Length = 202
Score = 36.0 bits (82), Expect = 0.004
Identities = 13/151 (8%), Positives = 34/151 (21%), Gaps = 15/151 (9%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQ--HAASVTCILYL---NNQVFVSLANGELVV 1242
+ + + + ++ L + S+T + N + ++G L V
Sbjct: 57 LLVAGDVRVIRIW----DASKEICYANLPVRSSNSITSLTSDLVGCNIIVAGFSDGVLRV 112
Query: 1243 YQREAGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLW---CGCQNRVLVLSPDTLQLEHM 1299
Y + V + + G V +
Sbjct: 113 YDKRLPARDSL---TDVWKEHSSEIVNVEMQSSGMRELISASSDGEVKLWDIRMNHSLQT 169
Query: 1300 FYVGQDSSRCVACMVDSSLGVWVTLKGSAHV 1330
F + + + + S +
Sbjct: 170 FSTDNSGLTSLTVHSHAPVYATGSSNQSIKI 200
>gi|452523 [41..225] 7-bladed beta-propeller
Length = 185
Score = 35.2 bits (80), Expect = 0.007
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 11/145 (7%)
Query: 1170 RGSLEDLLSVDPEAYQSSVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYL-N 1228
+ +V + LGT G + +Y + + H V CI + +
Sbjct: 48 QRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISG-GHDNRVNCIQWHQD 106
Query: 1229 NQVFVSLANGELVVYQREAGHFWDPQNFKSVTLGT-QGSPITKM-VSVGGRLWCGCQNRV 1286
+ S ++ + + W+ Q K S ++ + +S G++ +
Sbjct: 107 SGCLYSCSDDKHI-------VEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTI 159
Query: 1287 LVLSPDTLQLEHMFYVGQDSSRCVA 1311
+ +T ++ F +
Sbjct: 160 KLWVLETKEVYRHFTGHATPVSSLM 184
>gi|1495018 [84..244] 7-bladed beta-propeller
Length = 161
Score = 35.1 bits (80), Expect = 0.008
Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 1191 GTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYL--NNQVFVSLANGELVVYQREAG 1248
+ D + + + S DR++ + H SV I + + VFV+ V
Sbjct: 29 ISGDSTIRCWDLNQSTLDRKSQVFFGHEGSVRSICFAPDDPNVFVTGGRDFQV------- 81
Query: 1249 HFWDPQNFKSVTLGTQG--SPITKMV--SVGGRLW--CGCQNRVLVLSPDTLQLEHMFYV 1302
WD + + + IT ++ +++ + + ++ + ++
Sbjct: 82 KIWDMRVSTVKKMEEDCRMATITYKTAHPKPSKVLTSGTPKSKAKAKTIEGYKVTSVLFL 141
Query: 1303 GQDSSRCVACMVDSSLGVW 1321
+ + DS + VW
Sbjct: 142 DEHHVASASENADSGIRVW 160
>gi|2131405 [8..233] 7-bladed beta-propeller
Length = 226
Score = 34.8 bits (79), Expect = 0.011
Identities = 15/202 (7%), Positives = 51/202 (24%), Gaps = 31/202 (15%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQ-----HAASVTCILYL--NNQVFVSLANGEL 1240
+ G+ D + + S++ ++ H ++ + + + + + +
Sbjct: 20 LATGSTDRKIKLV----SVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 75
Query: 1241 VVYQREAGHFWDPQNFKSVTLGTQGSPITKM--VSVGGRLWCGCQ-NRVLVLSPDTLQLE 1297
++ +E + + + + + + G L + V + D E
Sbjct: 76 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 135
Query: 1298 HMFYVG--------------QDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAE 1343
+ + + D ++ +W +
Sbjct: 136 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 195
Query: 1344 VDVTPPVHRML---AGSDAIIR 1362
D D+ +R
Sbjct: 196 SDFDKTEGVFRLCSGSDDSTVR 217
>gi|2736365 [143..399] 7-bladed beta-propeller
Length = 257
Score = 34.5 bits (78), Expect = 0.012
Identities = 21/254 (8%), Positives = 50/254 (19%), Gaps = 40/254 (15%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILYL-------NNQVFVSLANGE 1239
+ G+ D + + ++ M+L H +V ++++ V N
Sbjct: 13 LATGSNDKTIRLMAFNEDSCRIGAEMELTCHDGTVRDLIFIESSINRSTILVSGGAGNCH 72
Query: 1240 LVVYQREAGH-FWDPQNFKSVTLGTQGSPITKMVSVGG-----RLWC---GCQNRVLVLS 1290
L V G + + + +
Sbjct: 73 LNVTDCNTGQLIQSMKGHTGSCMIVHLMLKISVTKFHILNCTVKTMIYHKTFSTLFHSFR 132
Query: 1291 PDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPV 1350
D + + V + + + +
Sbjct: 133 EDEKVQKSGSLGLPPILGLYTWSQAGNQFVSCSQDK--TIRFWDLRQQTAVN-------- 182
Query: 1351 HRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTVSCPRAPLSPT 1410
I + + + + +LL G V +
Sbjct: 183 --------VISPGNASPVTSV-CVDPNGKLLVSGHEDASVALFDIGGNRILQTF----RY 229
Query: 1411 GLGQGHTGHVRFLA 1424
H VR +
Sbjct: 230 LRSLPHGDEVRTVR 243
>gi|2494897 [186..459] 7-bladed beta-propeller
Length = 274
Score = 32.1 bits (72), Expect = 0.059
Identities = 27/274 (9%), Positives = 57/274 (19%), Gaps = 59/274 (21%)
Query: 1188 VWLGTEDGCVHVYQ--------------SSDSIRDRRNSMKLQ----HAASVTCILY--L 1227
+ +G + V+ S S + ++ K H +V + + L
Sbjct: 23 IAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKL 82
Query: 1228 NNQVFVSLANGELVVYQREAGHFWDPQNFKSV-TLGTQGSPITKMV--SVGGRLW--CGC 1282
V S + V WD K +L + + +
Sbjct: 83 IRNVLASASADNTV-------ILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSY 135
Query: 1283 QNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLA 1342
V + + H + V S + V + + +
Sbjct: 136 DKSVALYDCRSPDESHRMWRFSGQIERVTWNHFSPCHF-LASTDDGFVYNLDARSDKPIF 194
Query: 1343 EVDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLTMPTSPGTVSC 1402
+ H + + L ++ V
Sbjct: 195 T-----------------LNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDR--- 234
Query: 1403 PRAPLSPTGLGQGHTGHVRFLAAVQLPDGFNLLC 1436
S G + + PD +
Sbjct: 235 ----PSLVHSRDMKMGVLFCSSC--CPDLPFIYA 262
>gi|2662028 [241..421] 7-bladed beta-propeller
Length = 181
Score = 32.4 bits (73), Expect = 0.059
Identities = 12/150 (8%), Positives = 32/150 (21%), Gaps = 25/150 (16%)
Query: 1186 SSVWLGTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILYLNNQVFVSLANGELVVYQ 1244
+ + + H A + + + N +S + +
Sbjct: 40 TCSSDPNNPKLNLKA----PVFSEAPIREYAGHTADILDLSWSRNNFLLSSSMDKTA--- 92
Query: 1245 REAGHFWDPQNFKSVTLGTQGSPITKMV--SVGGRLW--CGCQNRVLVLSPDTLQL---- 1296
W P + +T + R + ++ + S +
Sbjct: 93 ----RLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWN 148
Query: 1297 EHMFYV-----GQDSSRCVACMVDSSLGVW 1321
E + D +A +
Sbjct: 149 ELPELITAVAFSPDGGLAIAGTFVGLCLFY 178
>gi|2129405 [8..201] S-adenosyl-L-methionine-dependent methyltransferases
Length = 194
Score = 31.8 bits (72), Expect = 0.075
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 661 PRYELL--VKDLLKHTPEDHPDHPLLL-EAQRNIKQVAERINKGVRSAEEAERHARVL 715
P + LL VK+ P D +P E + V E+ E + VL
Sbjct: 114 PEHVLLENVKEFRSWGPIDEDGNPTKDGSIFERWISTLEALGYSVVYDEKDEDYGVVL 171
>gi|1066956 [784..993] 7-bladed beta-propeller
Length = 210
Score = 31.0 bits (69), Expect = 0.15
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 18/145 (12%)
Query: 1188 VWLGTEDGCVHVYQSSDSIRDRRNSMKLQ-HAASVTCILYL-NNQVFVSLANGELVVYQR 1245
+W + + L H AS++ + + + VS ++
Sbjct: 73 LWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDGVI---- 128
Query: 1246 EAGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVL----SPDTLQLEHMFY 1301
+ + G +S L ++ +V + ++
Sbjct: 129 ---LIHTTSSDLLRRIRGHGIVTQLSMSRECILLSLFDSKRMVTYSATAKKLDEVLVDDK 185
Query: 1302 VG-----QDSSRCVACMVDSSLGVW 1321
+ +D V V+ + +W
Sbjct: 186 IECVTVTRDGEFAVTGAVNGRINIW 210
>gi|549660 [99..278] 7-bladed beta-propeller
Length = 180
Score = 28.6 bits (63), Expect = 0.68
Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 1191 GTEDGCVHVYQSSDSIRDRRNSMK--LQHAASVTCILYL-NNQVFVSLANGELVVYQREA 1247
E+ + +Y +K + + + N + + ++
Sbjct: 74 NPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSIGKH------ 127
Query: 1248 GHFWDPQNFKSVTL--GTQGSPITKMVSVGGRLWCGCQNRVLVLSPD 1292
+D + + GT+ P+ + + G + VL D
Sbjct: 128 -LIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGEFVLGTDYD 173
>gi|4006 [276..439] P-loop containing nucleotide triphosphate hydrolases
Length = 164
Score = 28.4 bits (62), Expect = 0.90
Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 5/77 (6%)
Query: 1184 YQSSVWLGTEDGCVHVYQSSDSI---RDRRNSMKLQHAASVTCILYLNNQVFVSLANGEL 1240
++ D C+ + +D + + I+ + N+ L + +
Sbjct: 71 DRAKKKSVQSDLCLFIVDPTDLSKLLPEDILAHLSSKTFGNKRIIIVVNK--SDLVSDDE 128
Query: 1241 VVYQREAGHFWDPQNFK 1257
+ +
Sbjct: 129 MTKVLNKLQTRLGSKYP 145
>gi|135122 [4..325] Class II aaRS and biotin synthetases
Length = 322
Score = 28.2 bits (62), Expect = 1.0
Identities = 25/218 (11%), Positives = 52/218 (23%), Gaps = 39/218 (17%)
Query: 698 INKGVRSAEEAERHARVLQEIEAHI------EGMEDLQAPLRRFLRQ-----EMVIEVKA 746
I R + R ++ + + +L R+ R + +E+ +
Sbjct: 105 IGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNS 164
Query: 747 IGGKKDRSLFLFTDLIVCTTLKRKSGSLRRSSMSLYTAASVIDTASKYKMLWKLPLEDAD 806
IG + R L + L + ++L E
Sbjct: 165 IGSLEAR----------ANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQA 214
Query: 807 IIKGASQATNRENIQKAISRLDEDLTTLGQMSKLSESLGFPHQSLDDALRDLSAAMHRDL 866
++ A + +E + KL ES G + + D
Sbjct: 215 LLNDAPALGDYL--------DEESREHFAGLCKLLESAGIAYTV------NQRLVRGLDY 260
Query: 867 -SEKQALCYALSFPPTKLELCATRPEGTDSYIFEFPHP 903
+ S R +G + +
Sbjct: 261 YNRTVFEWVTNSLGSQGTVCAGGRYDG---LVEQLGGR 295
>gi|123030 [1..120] Four-helical up-and-down bundle
Length = 120
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/47 (29%), Positives = 17/47 (35%), Gaps = 10/47 (21%)
Query: 563 QIPELLEH---HEQFLEQVRHCMQTWHAQQKVGALLVQSFSKDVLVN 606
E H HE FL +R A L ++KD LVN
Sbjct: 68 YKSEHPGHKKKHEDFLAVIRG----LSAPVPNDKL---LYAKDWLVN 107
>gi|121663 [123..314] ATP-grasp
Length = 192
Score = 27.7 bits (61), Expect = 1.3
Identities = 16/144 (11%), Positives = 37/144 (25%), Gaps = 13/144 (9%)
Query: 617 NAKDAVRVAKEARPAFLKFLEQSMRENKEK-QALSDLMIKPV-------QRIPRYELLVK 668
N K + P L ++ + K + SD+++KP+ +
Sbjct: 1 NEKLFTAWFSDLTPETLVT--RNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNL 58
Query: 669 DLLKHTPEDHPDHPLLLEAQRNIKQ---VAERINKGVRSAEEAERHARVLQEIEAHIEGM 725
++ T +H + + + + G R + + G
Sbjct: 59 GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG 118
Query: 726 EDLQAPLRRFLRQEMVIEVKAIGG 749
PL + +
Sbjct: 119 RGEPRPLTESDWKIARQIGPTLKE 142
>gi|433311 [68..521] DNA/RNA polymerases
Length = 454
Score = 27.7 bits (61), Expect = 1.5
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 488 KPPEAARPADEPTPASKCCSKP-QVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQP 546
+P T +K P + + + + + Y +L ++Q + +
Sbjct: 114 PLDPDYQPYTAFTLPNKNNQGPGRRYVWCSLPQGWVLSPLIYQSTLDNILQPWRK----- 168
Query: 547 ENSVLCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTW 585
+ + +D+I+ HE+ ++++R + W
Sbjct: 169 KYPNIDVYQYMDDIYIGSDFSRLEHEKIIQELRDLLIFW 207
>gi|417569 [3..336] Aspartate/ornithine carbamoyltransferase, Catalytic-chain
Length = 334
Score = 27.2 bits (60), Expect = 2.1
Identities = 12/95 (12%), Positives = 25/95 (25%), Gaps = 9/95 (9%)
Query: 1256 FKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVD 1315
F + T+ S ++ L+ ++ D+ +A +
Sbjct: 57 FLEPSTRTKESFRNAAKFHQV--------KLSDLAAESSSFNKGESY-ADTFNTLAGYQN 107
Query: 1316 SSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPV 1350
S V ++G F Q + P
Sbjct: 108 SIFIVRSEVEGVCRWLEDEAQAFYQRNNLKRKPAF 142
>gi|1360139 [98..407] 7-bladed beta-propeller
Length = 310
Score = 26.9 bits (59), Expect = 2.6
Identities = 18/173 (10%), Positives = 37/173 (20%), Gaps = 20/173 (11%)
Query: 1197 VHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFV-SLANGELVVYQREAGHFWDP-- 1253
++ D M N V V S ++ +
Sbjct: 60 AIIFNPKSGAWDNVPDM-NDKRWYPNNTTLANGDVLVLSGETDGEGLFNELP-QRYVAAT 117
Query: 1254 QNFKSVTLGTQGSPI--TKMVSVGGRLWC-GCQNRVLVLSPDTLQLEH-----MFYVGQD 1305
+++++T + P ++ +L+ G L PD F
Sbjct: 118 NSWQNLTTAQRKIPYYPHMFLAPNNKLFFSGPWRSSQWLDPDGTGTWFEAPYSHFGGR-- 175
Query: 1306 SSRCVACMVDSSLGVWVTLKG---SAHVCLYHPDTFEQLAEVDVTPPVHRMLA 1355
S D + + + + A R
Sbjct: 176 -SYGGHVYFDGKVLPVGGGNPPTETVELIDLNLPL-PTWAYQTPMSVARRQHN 226
>gi|1568595 [1..151] Ribosomal protein L9
Length = 151
Score = 26.5 bits (58), Expect = 3.1
Identities = 12/61 (19%), Positives = 24/61 (38%), Gaps = 5/61 (8%)
Query: 348 RNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQ-----DQTGSLSRARPSSR 402
RNF L LA + S ++ + R AR + + ++ + G ++ +S
Sbjct: 27 RNFLLPRGLAIVASRGAQKQADEIRRARETKSVRDLEHANEIKAAIEALGPIALPVKTSA 86
Query: 403 H 403
Sbjct: 87 D 87
Score = 25.3 bits (55), Expect = 6.6
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 687 AQRNIKQVAERIN-KGVRSAEEAERHARVLQE---IEAHIEGMEDLQAPLRRFLRQEMVI 742
AQ+ ++ K VR E A ++ I ++ D ++V
Sbjct: 43 AQKQADEIRRARETKSVRDLEHANEIKAAIEALGPIALPVKTSADSGKLFGSVTAADVVA 102
Query: 743 EVKAIGGKK-DRSLFLFTDLIVCTT 766
+K GG D+ + +
Sbjct: 103 AIKKAGGPNLDKRIVRLPKTHIKAV 127
>gi|2117634 [147..843] Lipoxigenase, C-terminal domain
Length = 697
Score = 26.0 bits (57), Expect = 4.0
Identities = 11/46 (23%), Positives = 16/46 (33%), Gaps = 4/46 (8%)
Query: 1015 PPSLRSPPETAPEPAGPELDVEAAADEEAATLAEPGP-QPCLHISI 1059
P R+ PEP PE + ++ Q L IS+
Sbjct: 586 PTLSRNF---MPEPGSPEYEELKTNPDKVFLKTITPQLQTLLGISL 628
>gi|125988 [12..184] EF Hand-like
Length = 173
Score = 25.9 bits (56), Expect = 4.9
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 5/118 (4%)
Query: 715 LQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFL--FTDLIVCTTLKRKSG 772
+ I I + L A RQE + +G + + + LK K+
Sbjct: 24 YELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKAE 83
Query: 773 SLRRSSMSLYTAASVIDTASKYKMLWKLPLEDADIIKGASQATNRENIQKAISRLDED 830
+ + IDT + E ++ + + LD +
Sbjct: 84 EKAMAVIQSLIMYDCIDTDKDGYVSLP---EFKAFLQAVGPDITDDKAITCFNTLDFN 138
>gi|2811252 [82..382] Periplasmic binding protein-like II
Length = 301
Score = 25.3 bits (55), Expect = 6.2
Identities = 7/60 (11%), Positives = 15/60 (24%), Gaps = 7/60 (11%)
Query: 765 TTLKRKSGSLRRSSMSLYTAASVIDTASKYKMLWKLPLEDADIIKGASQATNRENIQKAI 824
+K K G + + P ++ + + NR I +
Sbjct: 188 DPVKDKPGFSYTNYYRHGGGTIALHCNFG-------PTSLTEVRQAFAYVLNRPKIVELF 240
>gi|153548 [125..455] beta-Lactamase/D-ala carboxypeptidase
Length = 331
Score = 25.7 bits (56), Expect = 6.4
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 1125 ETTSSEEEQEPGFLPLSGSFGPGGPCGTSPMDGRALRRSSHGSFTRGSLEDLLSVDPEAY 1184
+T + G P++ + +AL SS+ + L + + Y
Sbjct: 88 QTLPDQSIVFQGSAPINSWYPAFSRPTPITGV-QALEYSSNAYMVQ----TALGLMGQTY 142
Query: 1185 QSSVWLGTE 1193
Q ++++GT
Sbjct: 143 QPNMFVGTS 151
>gi|2497466 [46..370] Purine nucleoside hydrolase
Length = 325
Score = 25.3 bits (55), Expect = 7.8
Identities = 6/65 (9%), Positives = 17/65 (25%), Gaps = 4/65 (6%)
Query: 1293 TLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKG--SAHVCLYHPDTFEQLAEVDVTPPV 1350
L E ++ D++ + D + + H + E + +
Sbjct: 162 NLSAEFNVWIDPDAANYIFR--DPDVKDKCIVVPLNLTHKAIATYKVNEMIYNEKNNSKL 219
Query: 1351 HRMLA 1355
+
Sbjct: 220 RELFL 224
>gi|2463100 [37..265] Trypsin-like serine proteases
Length = 229
Score = 25.1 bits (54), Expect = 7.9
Identities = 18/149 (12%), Positives = 28/149 (18%), Gaps = 34/149 (22%)
Query: 1265 GSPITK------MVSV--GGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDS 1316
G P+T M +V R C V +
Sbjct: 7 GKPLTSIVKYPFMATVWQNDRKLCTA-----------------SIVSPNYILSAGHCFVK 49
Query: 1317 SLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPVHRMLAGSD-AIIRQHKAACLRITALL 1375
+ Q +V+ + G D AI++ + A
Sbjct: 50 MSEENYIILVGTV-NAKLEKGNGQQFKVEKAHVYSETVFGQDIAIVKLKNSIDFSDNATQ 108
Query: 1376 VC----EELLWVGTS---AGVVLTMPTSP 1397
AG S
Sbjct: 109 PITLSRRSNFTKTDLAFIAGWGRITDWSS 137
>gi|1938424 [576..818] Acyl-CoA dehydrogenase (flavoprotein), N-terminal and middle domains
Length = 243
Score = 25.2 bits (55), Expect = 8.2
Identities = 4/32 (12%), Positives = 9/32 (27%)
Query: 1371 ITALLVCEELLWVGTSAGVVLTMPTSPGTVSC 1402
+ +CE + + V G +
Sbjct: 74 VEYAHICELMGRSIFAPEVFNCQAPDTGNMEV 105
>gi|478310 [306..563] beta/alpha (TIM)-barrel
Length = 258
Score = 24.9 bits (54), Expect = 8.6
Identities = 9/51 (17%), Positives = 14/51 (26%), Gaps = 3/51 (5%)
Query: 1232 FVSLANGELVVYQREAGHF---WDPQNFKSVTLGTQGSPITKMVSVGGRLW 1279
F V + FK+ Q + ++SVGG
Sbjct: 8 FADATTTPGAVTFNLDSAGLGGYTVDQFKADVRAKQAAGKKVIISVGGEKG 58
>gi|1420859 [36..611] Periplasmic binding protein-like II
Length = 576
Score = 24.9 bits (54), Expect = 9.0
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 799 KLPLEDADIIKGASQATNRENIQKAI 824
K L + D + A +R + Q
Sbjct: 294 KKALNNKDFRQAIQFAFDRASFQAQT 319
>gi|68234 [34..414] Citrate synthase
Length = 381
Score = 24.8 bits (54), Expect = 9.4
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 661 PRYELLVKDLLKHTPEDHPDHPLL 684
PR +++ + + E + P L
Sbjct: 281 PRAKVMKQTCDEVLQELGINDPQL 304
>gi|544020 [86..429] Nitrogenase iron-molybdenum protein, alpha and beta chains
Length = 344
Score = 24.8 bits (54), Expect = 9.7
Identities = 12/69 (17%), Positives = 23/69 (32%), Gaps = 2/69 (2%)
Query: 682 PLLLEAQRNIKQVAERINKGVRSAEEAER--HARVLQEIEAHIEGMEDLQAPLRRFLRQE 739
+ + + + + + V A R + L E + G A + + +E
Sbjct: 183 HISSSKEVDYEPYIDGQTRFVSQAAWFSRSIDCQNLTGKETVVFGDATHAASITKIPARE 242
Query: 740 MVIEVKAIG 748
M I V G
Sbjct: 243 MGIRVSYTG 251
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 1187
Number of sequences better than 10.0: 43
Number of calls to ALIGN: 50
Length of query: 1510
Total length of test sequences: 256703
Effective length of test sequences: 202633.0
Effective search space size: 296812805.7
Initial X dropoff for ALIGN: 25.0 bits