analysis of sequence from tem46
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
>gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLY
KDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDE
SGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIRKLKERIREEI
DKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSNTVVEAKGQRVRGRLYPWGIVEVENQAHCDF
VKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDE
ELRRMQEMLQRMKQQMQDQ
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
sec.str. with predator
> Tem46t_gi|9945439|ref|NP_002679.2|
. . . . .
1 MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVA 50
___HHHHHH________HHHHHHHHH___________________EEEEE
. . . . .
51 GESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGV 100
E______EEEEHHHHHHHH_HHHHHHHHHHHHHHHHHHHHHHHHHHH___
. . . . .
101 KLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQD 150
_EEEEEE___________________HHHHHHHHHHHHH___________
. . . . .
151 NRVHCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIR 200
___EEEEEEE___________HHHHHHHHHHH__HHHHHHH____HHHHH
. . . . .
201 KLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSN 250
HHHHHHHHHHHH___EEEEE__________HHHHHHHHHH____EEE___
. . . . .
251 TVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTC 300
_EEEE__HHHHH______EEEEE_____HHHHHHHHHHHHH____EEEEE
. . . . .
301 DVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDE 350
EE____HHHHHHHHHHHH_____________________HHHHHHHHHHH
.
351 ELRRMQEMLQRMKQQMQDQ 369
HHHHHHHHHHHHHHHH___
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
method : 1
alpha-contents : 39.0 %
beta-contents : 25.2 %
coil-contents : 35.8 %
class : mixed
method : 2
alpha-contents : 44.7 %
beta-contents : 5.6 %
coil-contents : 49.7 %
class : alpha
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
GPI: learning from metazoa
-13.83 -0.45 -0.72 -0.09 -4.00 0.00 -24.00 0.00 -2.83 -7.93 -2.29 -12.00 -12.00 0.00 -12.00 0.00 -92.12
-13.91 -2.74 -2.53 -4.08 0.00 0.00 0.00 0.00 -0.07 -6.27 -2.29 -12.00 -12.00 -24.00 -12.00 0.00 -91.89
ID: Tem46t_gi|9945439|ref|NP_002679.2| AC: xxx Len: 350 1:I 322 Sc: -91.89 Pv: 9.525351e-01 NO_GPI_SITE
GPI: learning from protozoa
-27.71 -0.43 -0.19 -0.56 -4.00 0.00 -24.00 0.00 -1.34 -6.82 -8.49 -12.00 -12.00 0.00 -12.00 0.00 -109.54
-17.90 -0.49 -0.03 0.00 -4.00 0.00 -20.00 0.00 -0.70 -6.82 -8.49 -12.00 -12.00 -12.00 -12.00 0.00 -106.43
ID: Tem46t_gi|9945439|ref|NP_002679.2| AC: xxx Len: 350 1:I 338 Sc: -106.43 Pv: 9.376300e-01 NO_GPI_SITE
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
# SignalP euk predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
Tem46t_gi|9 0.489 37 Y 0.119 116 N 0.300 166 N 0.060 N
# SignalP gram- predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
Tem46t_gi|9 0.516 167 Y 0.276 167 N 0.687 41 N 0.132 N
# SignalP gram+ predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
Tem46t_gi|9 0.498 192 Y 0.282 340 N 0.914 4 N 0.121 N
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
low complexity regions: SEG 12 2.2 2.5
>Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
1-197 MSTGLRYKSKLATPEDKQDIDKQYVGFATL
PNQVHRKSVKKGFDFTLMVAGESGLGKSTL
VHSLFLTDLYKDRKLLSAEERISQTVEILK
HTVDIEEKGVKLKLTIVDTPGFGDAVNNTE
CWKPITDYVDQQFEQYFRDESGLNRKNIQD
NRVHCCLYFISPFGHGLRPVDVGFMKALHE
KVNIVPLIAKADCLVPS
eirklkerireeidk 198-212
213-369 FGIHVYQFPECDSDEDEDFKQQDRELKESA
PFAVIGSNTVVEAKGQRVRGRLYPWGIVEV
ENQAHCDFVKLRNMLIRTHMHDLKDVTCDV
HYENYRAHCIQQMTSKLTQDSRMESPIPIL
PLPTPDAETEKLIRMKDEELRRMQEMLQRM
KQQMQDQ
low complexity regions: SEG 25 3.0 3.3
>Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
1-345 MSTGLRYKSKLATPEDKQDIDKQYVGFATL
PNQVHRKSVKKGFDFTLMVAGESGLGKSTL
VHSLFLTDLYKDRKLLSAEERISQTVEILK
HTVDIEEKGVKLKLTIVDTPGFGDAVNNTE
CWKPITDYVDQQFEQYFRDESGLNRKNIQD
NRVHCCLYFISPFGHGLRPVDVGFMKALHE
KVNIVPLIAKADCLVPSEIRKLKERIREEI
DKFGIHVYQFPECDSDEDEDFKQQDRELKE
SAPFAVIGSNTVVEAKGQRVRGRLYPWGIV
EVENQAHCDFVKLRNMLIRTHMHDLKDVTC
DVHYENYRAHCIQQMTSKLTQDSRMESPIP
ILPLPTPDAETEKLI
rmkdeelrrmqemlqrmkqqmqdq 346-369
low complexity regions: SEG 45 3.4 3.75
>Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
1-369 MSTGLRYKSKLATPEDKQDIDKQYVGFATL
PNQVHRKSVKKGFDFTLMVAGESGLGKSTL
VHSLFLTDLYKDRKLLSAEERISQTVEILK
HTVDIEEKGVKLKLTIVDTPGFGDAVNNTE
CWKPITDYVDQQFEQYFRDESGLNRKNIQD
NRVHCCLYFISPFGHGLRPVDVGFMKALHE
KVNIVPLIAKADCLVPSEIRKLKERIREEI
DKFGIHVYQFPECDSDEDEDFKQQDRELKE
SAPFAVIGSNTVVEAKGQRVRGRLYPWGIV
EVENQAHCDFVKLRNMLIRTHMHDLKDVTC
DVHYENYRAHCIQQMTSKLTQDSRMESPIP
ILPLPTPDAETEKLIRMKDEELRRMQEMLQ
RMKQQMQDQ
low complexity regions: XNU
# Score cutoff = 21, Search from offsets 1 to 4
# both members of each repeat flagged
# lambda = 0.347, K = 0.200, H = 0.664
>Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTL
VHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTE
CWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKALHE
KVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPecdsdededFKQQDRELKE
SAPFAVIGSNTVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTC
DVHYENYRAHCIQQMTSKLTQDSRMESpipilplptpdaeteKLIRMKDEELRRmqemlq
rmkqqmqdq
1 - 221 MSTGLRYKSK LATPEDKQDI DKQYVGFATL PNQVHRKSVK KGFDFTLMVA GESGLGKSTL
VHSLFLTDLY KDRKLLSAEE RISQTVEILK HTVDIEEKGV KLKLTIVDTP GFGDAVNNTE
CWKPITDYVD QQFEQYFRDE SGLNRKNIQD NRVHCCLYFI SPFGHGLRPV DVGFMKALHE
KVNIVPLIAK ADCLVPSEIR KLKERIREEI DKFGIHVYQF P
222 - 230 ecdsdeded
231 - 327 FKQQDRELKE SAPFAVIGSN TVVEAKGQRV RGRLYPWGIV EVENQAHCDF VKLRNMLIRT
HMHDLKDVTC DVHYENYRAH CIQQMTSKLT QDSRMES
328 - 342 pip ilplptpdae te
343 - 354 KLIRMKDE ELRR
355 - 369 mqemlq rmkqqmqdq
low complexity regions: DUST
>Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTL
VHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTE
CWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKALHE
KVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKE
SAPFAVIGSNTVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTC
DVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDEELRRMQEMLQ
RMKQQMQDQ
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
coiled coil prediction for Tem46t_gi|9945439|ref|NP_002679.2|
sequence: 350 amino acids, 0 residue(s) in coiled coil state
. | . | . | . | . | . 60
MSTGLRYKSK LATPEDKQDI DKQYVGFATL PNQVHRKSVK KGFDFTLMVA GESGLGKSTL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 120
VHSLFLTDLY KDRKLLSAEE RISQTVEILK HTVDIEEKGV KLKLTIVDTP GFGDAVNNTE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ 1222222222 2222211111 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 180
CWKPITDYVD QQFEQYFRDE SGLNRKNIQD NRVHCCLYFI SPFGHGLRPV DVGFMKALHE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 240
KVNIVPLIAK ADCLVPSEIR KLKERIREEI DKFGIHVYQF PECDSDEDED FKQQDRELKE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~8999 9999999999 985~~~~~~~ ~~~~~12222 2222222222 * 14 M'95 -w local
. | . | . | . | . | . 300
SAPFAVIGSN TVVEAKGQRV RGRLYPWGIV EVENQAHCDF VKLRNMLIRT HMHDLKDVTC
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
11~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . |
DVHYENYRAH CIQQMTSKLT QDSRMESPIP ILPLPTPDAE TEKLIRMKDE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
---------- ---------- ---------- ---------- ----------
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
prediction of transmembrane regions with toppred2
***********************************
*TOPPREDM with eukaryotic function*
***********************************
tem46.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem46.___inter___
(1 sequences)
MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVA
GESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGV
KLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQD
NRVHCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIR
KLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSN
TVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTC
DVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDE
ELRRMQEMLQRMKQQMQDQ
(p)rokaryotic or (e)ukaryotic: e
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 1 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment
Loop length 369
K+R profile +
CYT-EXT prof -0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 1.00
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 1.00
(NEG-POS)/(NEG+POS): 0.0442
NEG: 59.0000
POS: 54.0000
-> Orientation: N-in
CYT-EXT difference: -0.33
-> Orientation: N-in
----------------------------------------------------------------------
"tem46" 369
************************************
*TOPPREDM with prokaryotic function*
************************************
tem46.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem46.___inter___
(1 sequences)
MSTGLRYKSKLATPEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVA
GESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGV
KLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQD
NRVHCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIR
KLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSN
TVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTC
DVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDE
ELRRMQEMLQRMKQQMQDQ
(p)rokaryotic or (e)ukaryotic: p
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 1 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment
Loop length 369
K+R profile +
CYT-EXT prof -0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 1.00
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 1.00
(NEG-POS)/(NEG+POS): 0.0442
NEG: 59.0000
POS: 54.0000
-> Orientation: N-in
CYT-EXT difference: -0.33
-> Orientation: N-in
----------------------------------------------------------------------
"tem46" 369
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
NOW EXECUTING: /bio_software/1D/stat/saps/saps-stroh/SAPS.SSPA/saps /people/maria/tem46.___saps___
SAPS. Version of April 11, 1996.
Date run: Tue Oct 31 19:00:38 2000
File: /people/maria/tem46.___saps___
ID Tem46t_gi|9945439|ref|NP_002679.2|
DE peanut (Drosophila)-like 1 [Homo sapiens]
number of residues: 369; molecular weight: 42.8 kdal
1 MSTGLRYKSK LATPEDKQDI DKQYVGFATL PNQVHRKSVK KGFDFTLMVA GESGLGKSTL
61 VHSLFLTDLY KDRKLLSAEE RISQTVEILK HTVDIEEKGV KLKLTIVDTP GFGDAVNNTE
121 CWKPITDYVD QQFEQYFRDE SGLNRKNIQD NRVHCCLYFI SPFGHGLRPV DVGFMKALHE
181 KVNIVPLIAK ADCLVPSEIR KLKERIREEI DKFGIHVYQF PECDSDEDED FKQQDRELKE
241 SAPFAVIGSN TVVEAKGQRV RGRLYPWGIV EVENQAHCDF VKLRNMLIRT HMHDLKDVTC
301 DVHYENYRAH CIQQMTSKLT QDSRMESPIP ILPLPTPDAE TEKLIRMKDE ELRRMQEMLQ
361 RMKQQMQDQ
--------------------------------------------------------------------------------
COMPOSITIONAL ANALYSIS (extremes relative to: swp23s)
A : 14( 3.8%); C : 8( 2.2%); D : 29( 7.9%); E : 30( 8.1%); F : 15( 4.1%)
G : 18( 4.9%); H : 12( 3.3%); I : 21( 5.7%); K : 31( 8.4%); L : 32( 8.7%)
M : 12( 3.3%); N : 11( 3.0%); P : 16( 4.3%); Q : 22( 6.0%); R : 23( 6.2%)
S : 17( 4.6%); T : 19( 5.1%); V : 27( 7.3%); W : 2( 0.5%); Y : 10( 2.7%)
KR : 54 ( 14.6%); ED : 59 ( 16.0%); AGP : 48 ( 13.0%);
KRED : 113 ( 30.6%); KR-ED : -5 ( -1.4%); FIKMNY : 100 ( 27.1%);
LVIFM : 107 ( 29.0%); ST : 36 ( 9.8%).
--------------------------------------------------------------------------------
CHARGE DISTRIBUTIONAL ANALYSIS
1 00000+0+0+ 0000--+0-0 -+00000000 00000++00+ +00-000000 0-0000+000
61 0000000-00 +-++0000-- +00000-00+ 000-0--+00 +0+0000-00 000-00000-
121 00+000-00- 000-000+-- 0000++000- 0+00000000 0000000+00 -0000+000-
181 +00000000+ 0-00000-0+ +0+-+0+--0 -+00000000 0-0-0----- 0+00-+-0+-
241 0000000000 000-0+00+0 +0+0000000 -0-00000-0 0+0+0000+0 000-0+-000
301 -000-00+00 0000000+00 0-0+0-0000 0000000-0- 0-+00+0+-- -0++00-000
361 +0+0000-0
A. CHARGE CLUSTERS.
Positive charge clusters (cmin = 12/30 or 16/45 or 19/60): none
Negative charge clusters (cmin = 12/30 or 17/45 or 20/60): none
Mixed charge clusters (cmin = 19/30 or 26/45 or 32/60): none
B. HIGH SCORING (UN)CHARGED SEGMENTS.
There are no high scoring positive charge segments.
There are no high scoring negative charge segments.
There are no high scoring mixed charge segments.
There are no high scoring uncharged segments.
C. CHARGE RUNS AND PATTERNS.
pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)|
lmin0 5 | 6 | 9 | 26 | 10 | 10 | 14 | 11 | 11 | 15 | 7 | 9 |
lmin1 7 | 7 | 11 | 31 | 12 | 12 | 17 | 14 | 14 | 18 | 9 | 11 |
lmin2 8 | 8 | 12 | 34 | 13 | 14 | 19 | 15 | 16 | 21 | 10 | 13 |
(Significance level: 0.010000; Minimal displayed length: 6)
There are no charge runs or patterns exceeding the given minimal lengths.
Run count statistics:
+ runs >= 4: 0
- runs >= 4: 1, at 226;
* runs >= 6: 0
0 runs >= 17: 0
--------------------------------------------------------------------------------
DISTRIBUTION OF OTHER AMINO ACID TYPES
1. HIGH SCORING SEGMENTS.
There are no high scoring hydrophobic segments.
There are no high scoring transmembrane segments.
2. SPACINGS OF C.
H2N-120-C-33-C-C-36-C-29-C-54-C-21-C-10-C-58-COOH
2*. SPACINGS OF C and H. (additional deluxe function for ALEX)
H2N-34-H-26-H-28-H-29-C-32-H-C-C-8-H-13-H-13-C-22-H-6-C-53-H-C-12-H-1-H-6-C-2-H-6-H-C-58-COOH
--------------------------------------------------------------------------------
REPETITIVE STRUCTURES.
A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet.
Repeat core block length: 4
Aligned matching blocks:
[ 52- 55] ESGL
[ 140- 143] ESGL
B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet.
(i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C)
Repeat core block length: 8
--------------------------------------------------------------------------------
MULTIPLETS.
A. AMINO ACID ALPHABET.
1. Total number of amino acid multiplets: 14 (Expected range: 7-- 34)
2. Histogram of spacings between consecutive amino acid multiplets:
(1-5) 3 (6-10) 1 (11-20) 4 (>=21) 7
3. Clusters of amino acid multiplets (cmin = 8/30 or 10/45 or 12/60): none
B. CHARGE ALPHABET.
1. Total number of charge multiplets: 13 (Expected range: 3-- 26)
6 +plets (f+: 14.6%), 7 -plets (f-: 16.0%)
Total number of charge altplets: 15 (Critical number: 30)
2. Histogram of spacings between consecutive charge multiplets:
(1-5) 4 (6-10) 1 (11-20) 5 (>=21) 4
3. Long charge multiplets (>= 5; Letter/Length/Position):
-/5/226
--------------------------------------------------------------------------------
PERIODICITY ANALYSIS.
A. AMINO ACID ALPHABET (core: 4; !-core: 5)
Location Period Element Copies Core Errors
86- 113 7 V...... 4 4 0
224- 231 2 D. 4 4 0
B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 7)
and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core:10)
Location Period Element Copies Core Errors
73- 114 7 *...00. 6 6 /0/./././2/1/./
201- 212 2 *. 6 6 0
226- 230 1 - 5 5 0
--------------------------------------------------------------------------------
SPACING ANALYSIS.
Location (Quartile) Spacing Rank P-value Interpretation
19- 21 (1.) D( 2)D 30 of 30 0.0058 large minimal spacing
126- 251 (3.) T( 125)T 1 of 20 0.0060 large maximal spacing
224- 226 (3.) D( 2)D 26 of 30 0.0058 matching minimum
226- 228 (3.) D( 2)D 27 of 30 0.0058 matching minimum
228- 230 (3.) D( 2)D 28 of 30 0.0058 matching minimum
368- 370 (1.) D( 2)D 29 of 30 0.0058 matching minimum
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Pfam (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/Pfam
Sequence file: tem46
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP_CDC Cell division protein 629.9 1.4e-185 1
kinesin Kinesin motor domain 0.1 42 1
asp Eukaryotic aspartyl protease -0.9 69 1
DUF19 Domain of unknown function DUF19 -1.1 59 1
PI3K_p85B PI3-kinase family, p85-binding domain -21.4 17 1
ras Ras family -137.2 5.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
asp 1/1 19 30 .. 345 356 .] -0.9 69
ras 1/1 46 249 .. 1 198 [] -137.2 5.6
PI3K_p85B 1/1 188 259 .. 1 80 [] -21.4 17
DUF19 1/1 277 283 .. 167 173 .] -1.1 59
GTP_CDC 1/1 41 321 .. 1 292 [] 629.9 1.4e-185
kinesin 1/1 345 366 .. 395 417 .] 0.1 42
Alignments of top-scoring domains:
asp: domain 1 of 1, from 19 to 30: score -0.9, E = 69
*->DrdNnrvGlApa<-*
D+d + vG+A++
Tem46t_gi| 19 DIDKQYVGFATL 30
ras: domain 1 of 1, from 46 to 249: score -137.2, E = 5.6
*->KlVliGDsGVGKSsLliR.FtdnkFveeYipTIGvDFytktvevD..
l + G+sG GKS+L++ F ++ + + ++ ++tve+ ++
Tem46t_gi| 46 TLMVAGESGLGKSTLVHSlFLTDLYKDRKLLSA-EERISQTVEILkh 91
.......GktvkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSF
+ + +++G + kL I DT G +a +++ +
Tem46t_gi| 92 tvdieekGVKLKLTIVDTPG------FGDA-------------VNNTECW 122
envkkWl.eeilrhadkdenvpivLVGNKcDLeddedleltegq......
+ ++++++++++++ + e g ++++ +
Tem46t_gi| 123 KPITDYVdQQFEQYFR--D-------------ES--------GLnrkniq 149
.................kRvVsteeGealAkelgAlpFmETSAKtntNVe
+++ + ++ +++ R+V+ +al+++ + +p + AK V
Tem46t_gi| 150 dnrvhcclyfispfghgLRPVDVGFMKALHEKVNIVPLI---AKADCLVP 196
eaFeelareilkkvse...............vnvnldqpakkkk...skC
l ++i++ +++ + + + ++ +++++ ++q+ + k + +
Tem46t_gi| 197 SEIRKLKERIREEIDKfgihvyqfpecdsdeDEDFKQQDRELKEsapFAV 246
cil<-*
+ +
Tem46t_gi| 247 IGS 249
PI3K_p85B: domain 1 of 1, from 188 to 259: score -21.4, E = 17
*->lveLrvsrEatlsvIKheLfkqakkmPlgtllkdaqsYvFvqvnqta
++ ++ + K +++ k+ + + +++
Tem46t_gi| 188 IAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPECD--------SD 226
eiEelfDETrRLsdlrlfGTfPiLkLverdgtn<-*
e E + +r L + +f + +ve g +
Tem46t_gi| 227 EDEDFKQQDRELKESAPFAVIGSNTVVEAKGQR 259
DUF19: domain 1 of 1, from 277 to 283: score -1.1, E = 59
*->qCDFSrL<-*
+CDF +L
Tem46t_gi| 277 HCDFVKL 283
GTP_CDC: domain 1 of 1, from 41 to 321: score 629.9, E = 1.4e-185
*->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgase
kGfdFTLMV+GeSGLGK+Tl+ +LFltdL+ + r+ ++a+e
Tem46t_gi| 41 KGFDFTLMVAGESGLGKSTLVHSLFLTDLYKD-------RKLLSAEE 80
tkikktveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY
+i +tveI +++v iEE+GvkL+LT++DTPGFGDa++N++cW+pI +Y
Tem46t_gi| 81 -RISQTVEIL-KHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKPITDY 128
IdeQheqYLrqEsrinRtkivDnRVHcCLYFIsPtGhgLkpLDvefMKkL
+d+Q+eqY+r+Es++nR++i+DnRVHcCLYFIsP+GhgL+p Dv fMK+L
Tem46t_gi| 129 VDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKAL 178
sekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPdeeedeG
+ekVN++P IAKAD+L + E+ +K+rIreei++++I +Y+FP++++de
Tem46t_gi| 179 HEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPECDSDE- 227
DEefkeqtqqLkssiPFAIVGSneeiengdGekVRGRkYPWGvVEVENps
DE+fk+q+++Lk+s PFA++GSn+++e+ +G++VRGR+YPWG+VEVEN
Tem46t_gi| 228 DEDFKQQDRELKESAPFAVIGSNTVVEA-KGQRVRGRLYPWGIVEVENQA 276
HCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<-*
HCDFvkLRn+LirtH++DLk++T +++YEnYR+ +++ + +k
Tem46t_gi| 277 HCDFVKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSKLTQ 321
kinesin: domain 1 of 1, from 345 to 366: score 0.1, E = 42
*->edpkasallRrleeeiqkLktel<-*
+++k+ ++lRr++e q +k+++
Tem46t_gi| 345 IRMKD-EELRRMQEMLQRMKQQM 366
//
Start with PfamFrag (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/PfamFrag
Sequence file: tem46
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP_CDC Cell division protein 629.9 1.4e-185 1
FtsK_SpoIIIE FtsK/SpoIIIE family 1.8 28 1
VHS VHS domain 1.4 41 1
AAA ATPases associated with various cellul 0.4 41 1
kinesin Kinesin motor domain 0.1 42 1
V_ATPase_sub_a V-type ATPase 116kDa subunit family -0.5 31 1
asp Eukaryotic aspartyl protease -0.9 69 1
DUF19 Domain of unknown function DUF19 -1.1 59 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
asp 1/1 19 30 .. 345 356 .] -0.9 69
AAA 1/1 46 64 .. 1 19 [. 0.4 41
FtsK_SpoIIIE 1/1 47 64 .. 48 65 .. 1.8 28
V_ATPase_sub_a 1/1 200 222 .. 243 265 .. -0.5 31
DUF19 1/1 277 283 .. 167 173 .] -1.1 59
GTP_CDC 1/1 41 321 .. 1 292 [] 629.9 1.4e-185
VHS 1/1 349 365 .. 138 155 .] 1.4 41
kinesin 1/1 345 366 .. 395 417 .] 0.1 42
Alignments of top-scoring domains:
asp: domain 1 of 1, from 19 to 30: score -0.9, E = 69
*->DrdNnrvGlApa<-*
D+d + vG+A++
Tem46t_gi| 19 DIDKQYVGFATL 30
AAA: domain 1 of 1, from 46 to 64: score 0.4, E = 41
*->gvLLyGPPGtGKTlLAkav<-*
+ G G GK++L++++
Tem46t_gi| 46 TLMVAGESGLGKSTLVHSL 64
FtsK_SpoIIIE: domain 1 of 1, from 47 to 64: score 1.8, E = 28
*->lLiaGatGSGKSvflntl<-*
l++aG++G GKS+ +++l
Tem46t_gi| 47 LMVAGESGLGKSTLVHSL 64
V_ATPase_sub_a: domain 1 of 1, from 200 to 222: score -0.5, E = 31
*->keildkvkkIlesfgfelydvpe<-*
+++++++++ +++fg ++y++pe
Tem46t_gi| 200 RKLKERIREEIDKFGIHVYQFPE 222
DUF19: domain 1 of 1, from 277 to 283: score -1.1, E = 59
*->qCDFSrL<-*
+CDF +L
Tem46t_gi| 277 HCDFVKL 283
GTP_CDC: domain 1 of 1, from 41 to 321: score 629.9, E = 1.4e-185
*->kGfdFTLMVVGeSGLGKtTlINTLFltdLidangvanDsreidgase
kGfdFTLMV+GeSGLGK+Tl+ +LFltdL+ + r+ ++a+e
Tem46t_gi| 41 KGFDFTLMVAGESGLGKSTLVHSLFLTDLYKD-------RKLLSAEE 80
tkikktveIkeitkveiEEdGvkLnLTViDTPGFGDaiDNskcWepIveY
+i +tveI +++v iEE+GvkL+LT++DTPGFGDa++N++cW+pI +Y
Tem46t_gi| 81 -RISQTVEIL-KHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKPITDY 128
IdeQheqYLrqEsrinRtkivDnRVHcCLYFIsPtGhgLkpLDvefMKkL
+d+Q+eqY+r+Es++nR++i+DnRVHcCLYFIsP+GhgL+p Dv fMK+L
Tem46t_gi| 129 VDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKAL 178
sekVNlIPVIAKADtLTadElqefKkrIreeierqnIkIYkFPdeeedeG
+ekVN++P IAKAD+L + E+ +K+rIreei++++I +Y+FP++++de
Tem46t_gi| 179 HEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPECDSDE- 227
DEefkeqtqqLkssiPFAIVGSneeiengdGekVRGRkYPWGvVEVENps
DE+fk+q+++Lk+s PFA++GSn+++e+ +G++VRGR+YPWG+VEVEN
Tem46t_gi| 228 DEDFKQQDRELKESAPFAVIGSNTVVEA-KGQRVRGRLYPWGIVEVENQA 276
HCDFvkLRnlLirtHLqDLketTeeilYEnYRsekLsalglkaen<-*
HCDFvkLRn+LirtH++DLk++T +++YEnYR+ +++ + +k
Tem46t_gi| 277 HCDFVKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSKLTQ 321
VHS: domain 1 of 1, from 349 to 365: score 1.4, E = 41
*->dpdlsyivdlyklLkrkG<-*
d++l+ ++++ +++k ++
Tem46t_gi| 349 DEELRRMQEMLQRMK-QQ 365
kinesin: domain 1 of 1, from 345 to 366: score 0.1, E = 42
*->edpkasallRrleeeiqkLktel<-*
+++k+ ++lRr++e q +k+++
Tem46t_gi| 345 IRMKD-EELRRMQEMLQRMKQQM 366
//
Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib
Sequence file: tem46
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Prosite
---------------------------------------------------------
| ppsearch (c) 1994 EMBL Data Library |
| based on MacPattern (c) 1990-1994 R. Fuchs |
---------------------------------------------------------
PROSITE pattern search started: Tue Oct 31 19:02:46 2000
Sequence file: tem46
----------------------------------------
Sequence Tem46t_gi|9945439|ref|NP_002679.2| (369 residues):
Matching pattern PS00001 ASN_GLYCOSYLATION:
117: NNTE
Total matches: 1
Matching pattern PS00005 PKC_PHOSPHO_SITE:
38: SVK
316: TSK
341: TEK
Total matches: 3
Matching pattern PS00006 CK2_PHOSPHO_SITE:
13: TPED
77: SAEE
105: TIVD
225: SDED
251: TVVE
323: SRME
Total matches: 6
Matching pattern PS00008 MYRISTYL:
54: GLGKST
Total matches: 1
Matching pattern PS00017 ATP_GTP_A:
51: GESGLGKS
Total matches: 1
Total no of hits in this sequence: 12
========================================
1314 pattern(s) searched in 1 sequence(s), 369 residues.
Total no of hits in all sequences: 12.
Search time: 00:00 min
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Profile Search
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with motif search against own library
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
argv[1]=P
argv[2]=-m /data/patterns/own/motif.fa
argv[4]=-seq tem46
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
SeqTyp=2 : PROTEIN search;
>APC D-Box is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 369 units
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~
Start with HMM-search search against own library
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm.lib
Sequence file: tem46
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm-f.lib
Sequence file: tem46
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
L. Aravind's signalling DB
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1
[Homo sapiens]
(369 letters)
Searching..................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
SGTP Small GTPAses 30 0.004
AAA AAA+ ATPase Module 23 0.88
DSP Dual specificity protein phosphatase 22 1.7
AP2 A plant specific DNA binding domain (Apetala 2 like) 21 2.5
DHHC Novel zinc finger domain with DHHC signature 21 2.8
FYVE Zinc Finger domain involved in PtdIns(3)P binding 21 3.3
MATH The Meprin associated TRAF homology domain 19 8.9
>SGTP Small GTPAses
Length = 164
Score = 30.2 bits (68), Expect = 0.004
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 9/67 (13%)
Query: 45 FTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKL 104
F +V G +G GKS L+H F+ +K + + T+ + + I G +KL
Sbjct: 1 FKFLVIGNAGTGKSCLLHQ-FIEKKFK--------DDSNHTIGVEFGSKIINVGGKYVKL 51
Query: 105 TIVDTPG 111
I DT G
Sbjct: 52 QIWDTAG 58
>AAA AAA+ ATPase Module
Length = 298
Score = 22.5 bits (47), Expect = 0.88
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 32 NQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSL 64
+ H +++ +++ G G GK+ L ++
Sbjct: 68 HPEHFEALGIAQPKGVLLYGPPGTGKTLLARAV 100
>DSP Dual specificity protein phosphatase
Length = 185
Score = 21.8 bits (46), Expect = 1.7
Identities = 6/36 (16%), Positives = 11/36 (29%)
Query: 315 MTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDE 350
M + +S I L + D + L +
Sbjct: 69 MHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFER 104
>AP2 A plant specific DNA binding domain (Apetala 2 like)
Length = 218
Score = 20.9 bits (43), Expect = 2.5
Identities = 7/45 (15%), Positives = 14/45 (30%), Gaps = 4/45 (8%)
Query: 225 SDEDEDFKQQDRELKESAPFAVIGSNTVVEAKGQRVRG-RLYPWG 268
S+ + ++ + ++ K RG R WG
Sbjct: 4 SESTKSWEASAVRQENEEEKKKPVKDSG---KHPVYRGVRKRNWG 45
>DHHC Novel zinc finger domain with DHHC signature
Length = 217
Score = 20.9 bits (43), Expect = 2.8
Identities = 7/21 (33%), Positives = 12/21 (56%), Gaps = 2/21 (9%)
Query: 254 EAKGQRVR--GRLYPWGIVEV 272
E +GQR R G +P +++
Sbjct: 33 ELQGQRSRRNGWSWPPHPLQI 53
>FYVE Zinc Finger domain involved in PtdIns(3)P binding
Length = 99
Score = 20.8 bits (43), Expect = 3.3
Identities = 6/34 (17%), Positives = 12/34 (34%)
Query: 122 WKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHC 155
WK ++ ++ RK + + HC
Sbjct: 27 WKTSDCCQKCNQPFFWNLQAMWQRKVVGLRQHHC 60
>MATH The Meprin associated TRAF homology domain
Length = 209
Score = 19.4 bits (40), Expect = 8.9
Identities = 3/22 (13%), Positives = 11/22 (49%)
Query: 85 TVEILKHTVDIEEKGVKLKLTI 106
V +++ +V+I + + +
Sbjct: 160 EVSVVQDSVNISGQNTMNMVKV 181
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 105
Number of sequences better than 10.0: 7
Number of calls to ALIGN: 7
Length of query: 369
Total length of test sequences: 20182
Effective length of test sequences: 16536.0
Effective search space size: 5530670.8
Initial X dropoff for ALIGN: 25.0 bits
Y. Wolf's SCOP PSSM
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= Tem46t_gi|9945439|ref|NP_002679.2| peanut (Drosophila)-like 1
[Homo sapiens]
(369 letters)
Searching.................................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
gi|2814284 [1..224] P-loop containing nucleotide triphosphat... 55 3e-09
gi|1301656 [50..208] P-loop containing nucleotide triphospha... 48 3e-07
gi|729400 [38..325] P-loop containing nucleotide triphosphat... 45 1e-06
gi|1695241 [169..336] P-loop containing nucleotide triphosph... 37 4e-04
gi|1572819 [7..164] P-loop containing nucleotide triphosphat... 35 0.003
gi|1666073 [6..176] P-loop containing nucleotide triphosphat... 31 0.035
gi|4006 [276..439] P-loop containing nucleotide triphosphate... 29 0.11
gi|1086887 [26..189] P-loop containing nucleotide triphospha... 28 0.31
gi|2649774 [45..384] Periplasmic binding protein-like I 27 0.46
gi|2132165 [3..190] P-loop containing nucleotide triphosphat... 27 0.47
gi|2127787 [36..400] Periplasmic binding protein-like I 27 0.71
gi|2494396 [4..243] alpha/beta-Hydrolases 26 1.0
gi|137196 [30..266] P-loop containing nucleotide triphosphat... 25 1.8
gi|730933 [142..476] Cysteine proteinases 25 2.3
gi|1001767 [11..214] P-loop containing nucleotide triphospha... 25 2.5
gi|1487871 [16..342] Periplasmic binding protein-like I 25 2.6
gi|1495469 [3..289] P-loop containing nucleotide triphosphat... 25 2.7
gi|2493387 [94..456] Cytochrome P450 25 2.8
gi|2688657 [81..435] Phosphofructokinase 24 2.9
gi|1531539 [70..226] P-loop containing nucleotide triphospha... 24 3.9
gi|2647961 [96..299] P-loop containing nucleotide triphospha... 24 4.7
gi|134579 [59..285] P-loop containing nucleotide triphosphat... 24 4.9
gi|1280085 [6..334] beta/alpha (TIM)-barrel 23 5.8
gi|809280 [1..209] Glycinamide ribonucleotide transformylase 24 5.9
gi|1703166 [11..338] beta/alpha (TIM)-barrel 23 6.3
gi|2624005 [295..479] beta-Prism I 23 6.4
gi|1072178 [17..364] Phosphoglycerate mutase-like 23 6.5
gi|1350557 [4..271] P-loop containing nucleotide triphosphat... 23 6.7
gi|2650282 [2..154] P-loop containing nucleotide triphosphat... 23 7.3
gi|2635745 [372..520] Aldehyde oxidoreductase, molybdemum co... 23 8.6
gi|2652959 [169..353] P-loop containing nucleotide triphosph... 23 8.7
gi|2190590 [34..336] Periplasmic binding protein-like I 23 9.6
>gi|2814284 [1..224] P-loop containing nucleotide triphosphate hydrolases
Length = 224
Score = 54.5 bits (129), Expect = 3e-09
Identities = 22/195 (11%), Positives = 51/195 (25%), Gaps = 15/195 (7%)
Query: 45 FTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKL 104
+V G+ +GK+ L+ S + L + +I + + K
Sbjct: 4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVSHFLSGHLRKIRRKNL---------KK 54
Query: 105 TIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFG 164
+ + + + + ++ + + D R L G
Sbjct: 55 NLKKNLSILF---YLKNHEKLNSFFKKRQLLSVNVFDTYSTNVMVDGR-PINLSLWDTAG 110
Query: 165 HGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPECD 224
D + + + A + +R + + D
Sbjct: 111 Q--DDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKAD 168
Query: 225 SDEDEDFKQQDRELK 239
ED D ++ RE +
Sbjct: 169 LREDRDTIERLRERR 183
>gi|1301656 [50..208] P-loop containing nucleotide triphosphate hydrolases
Length = 159
Score = 47.9 bits (112), Expect = 3e-07
Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 18/157 (11%)
Query: 45 FTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKL 104
++V G +GK+ ++ + + + + T+E + E + L
Sbjct: 3 MRVVVVGGKKVGKTAILRQVACVEDVTN-------KPYEPTIEDTYQVLLEEPDKAREIL 55
Query: 105 TIVDTPGFGDAVNNT---------ECWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHC 155
+ DT G + + + + D + + ++
Sbjct: 56 ILHDTAGVSNYGPIELKKAYVQAADAFVLVYSSADYESFNRVDLLKKWIDRQFGKDKKEV 115
Query: 156 CLYFISPFGHGLRPVDVGFMKALHEK--VNIVPLIAK 190
+ ++ VD F + + V + + AK
Sbjct: 116 PIVVLANMRDRPATVDSAFAHSWAAREKVKLFEVTAK 152
>gi|729400 [38..325] P-loop containing nucleotide triphosphate hydrolases
Length = 288
Score = 45.3 bits (105), Expect = 1e-06
Identities = 20/199 (10%), Positives = 50/199 (25%), Gaps = 14/199 (7%)
Query: 45 FTLMVAGESGLGKSTLVHSLF---------LTDLYKDRKLLSAEERISQTVEILKHTVDI 95
+ + GK+T + D E+ S+ + I +
Sbjct: 5 RNIGIIAHIDAGKTTTTERMLYYAGISKHIGDVDTGDTITDFLEQERSRGITIQSAAI-S 63
Query: 96 EEKGVKLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRD--ESGLNRKNIQDNRV 153
+ ++DTPG D + D + ++ K +
Sbjct: 64 FPWRNTFAINLIDTPGHIDFTFEVIRALKVIDSCVVILDAVAGVEAQTEKVWKQSKSKPK 123
Query: 154 HCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADC--LVPSEIRKLKERIREEID 211
C + + G + P++ P+ + + + + ++
Sbjct: 124 ICFINKMDRMGASFNHTVNDLINKFMRGTTTKPVLVNIPYYRKQPTSNDYVFQGVIDVVN 183
Query: 212 KFGIHVYQFPECDSDEDED 230
+ + DE
Sbjct: 184 GKRLTWNPENPDEIIVDEL 202
>gi|1695241 [169..336] P-loop containing nucleotide triphosphate hydrolases
Length = 168
Score = 37.4 bits (85), Expect = 4e-04
Identities = 14/168 (8%), Positives = 43/168 (25%), Gaps = 6/168 (3%)
Query: 44 DFTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLK 103
L + G GK +L + + + + T + + V L+
Sbjct: 3 HVVLRIYGARNCGKKSLANR--IHHFATSMAPERVDPDENGNDYTKMTTFLLNGREVTLE 60
Query: 104 LTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNR--KNIQDNRVHCCLYFIS 161
+ + T + + + + ++Q Y + L
Sbjct: 61 ILLESTLENSPFRQSKTLYIVMYNMDNRQSFIYATQILERITLANLNNPVPLQLFLIGNK 120
Query: 162 PFGHGLRPVDVGFMKALHEK--VNIVPLIAKADCLVPSEIRKLKERIR 207
+ + K++ + + + A + + ++
Sbjct: 121 CDLKRNQVISTNEGKSVARTFKCDFLEVSALLGMNTEETWTTILKELQ 168
>gi|1572819 [7..164] P-loop containing nucleotide triphosphate hydrolases
Length = 158
Score = 34.5 bits (78), Expect = 0.003
Identities = 23/156 (14%), Positives = 40/156 (24%), Gaps = 21/156 (13%)
Query: 45 FTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKL 104
+++ G+ G GK++LV SL + ++ V E +
Sbjct: 4 VRIVLIGDEGCGKTSLVMSLLEDE-------WVDAVPRRLDRVLIPADVTPE----NVTT 52
Query: 105 TIVDTPGFGDAVNNTECWK----------PITDYVDQQFEQYFRDESGLNRKNIQDNRVH 154
+IVD + N +TD Q
Sbjct: 53 SIVDLSIKEEDENWIVSEIRQANVICVVYSVTDESTVDGIQTKWLPLIRQSFGEYHETPV 112
Query: 155 CCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAK 190
+ S + M+A E V A+
Sbjct: 113 ILVGNKSDGTANNTDKILPIMEANTEVETCVECSAR 148
>gi|1666073 [6..176] P-loop containing nucleotide triphosphate hydrolases
Length = 171
Score = 30.8 bits (68), Expect = 0.035
Identities = 11/81 (13%), Positives = 25/81 (30%)
Query: 47 LMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTI 106
+ V G G+GK+ ++ D + + V + D+ + +
Sbjct: 2 VAVLGAPGVGKTAIIRQFLFGDYPERHRPTDGPRLYRPAVLLDGAVYDLSIRDGDVAGPG 61
Query: 107 VDTPGFGDAVNNTECWKPITD 127
G + + + TD
Sbjct: 62 SSPGGPEEWPDAKDWSLQDTD 82
>gi|4006 [276..439] P-loop containing nucleotide triphosphate hydrolases
Length = 164
Score = 29.2 bits (64), Expect = 0.11
Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 31/178 (17%)
Query: 47 LMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTI 106
L++ G +GKS+LV+SL D+ + I G K+ I
Sbjct: 2 LVLLGAPNVGKSSLVNSLTNDDI--------SIVSDIPGTTRDSIDAMINVNGY--KVII 51
Query: 107 VDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFIS-PFGH 165
DT G + ++ I K + + + +
Sbjct: 52 CDTAGIREKSSDKIEMLGIDRAK----------------KKSVQSDLCLFIVDPTDLSKL 95
Query: 166 GLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPEC 223
+ I+ ++ K+D + E+ K+ ++ Y
Sbjct: 96 LPEDILAHLSSKTFGNKRIIIVVNKSDLVSDDEMTKVL----NKLQTRLGSKYPILSV 149
>gi|1086887 [26..189] P-loop containing nucleotide triphosphate hydrolases
Length = 164
Score = 27.6 bits (60), Expect = 0.31
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 47 LMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTI 106
++V G GKST + + E++ + ++ V + V +L
Sbjct: 2 IIVVGAKNAGKSTFIERVE-------FGKFHEEKQTEKLYRVIAKKVFEQTLTV--ELIE 52
Query: 107 VDTPGFGDA 115
D G +
Sbjct: 53 KDLGGLTNE 61
>gi|2649774 [45..384] Periplasmic binding protein-like I
Length = 340
Score = 27.3 bits (60), Expect = 0.46
Identities = 6/48 (12%), Positives = 17/48 (34%)
Query: 200 RKLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVI 247
E+ +E G + + + DF +++ + P ++
Sbjct: 153 VLWGEKFKEYWKSKGGEIVAEAPVNYYTETDFTTHLQKVLAANPEVIL 200
>gi|2132165 [3..190] P-loop containing nucleotide triphosphate hydrolases
Length = 188
Score = 27.3 bits (59), Expect = 0.47
Identities = 14/94 (14%), Positives = 28/94 (28%), Gaps = 7/94 (7%)
Query: 36 RKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDI 95
+ K +++++ G GK+T + + L K+ L Q V
Sbjct: 7 YNNWNKKEQYSILILGLDNAGKTTFLET-----LKKEYSLAFKALEKIQPTVG--QNVAT 59
Query: 96 EEKGVKLKLTIVDTPGFGDAVNNTECWKPITDYV 129
K L D G + + + +
Sbjct: 60 IPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGI 93
>gi|2127787 [36..400] Periplasmic binding protein-like I
Length = 365
Score = 26.6 bits (58), Expect = 0.71
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 9/79 (11%)
Query: 172 VGFMKALHEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGI---HVYQFPECDSDED 228
K + V +I + D + L+ E++ GI + D
Sbjct: 134 GDVAK--QLGLKNVIVIYRKD----AWGDGLERATVEKLKANGINIIDEIPYDPNIGDWS 187
Query: 229 EDFKQQDRELKESAPFAVI 247
+ ++ +
Sbjct: 188 PIIQTTTNKIAGKGNDTGV 206
>gi|2494396 [4..243] alpha/beta-Hydrolases
Length = 240
Score = 26.1 bits (57), Expect = 1.0
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 49 VAGESGLGKSTLVHSLFLTDLYKDRKLLSA 78
+ GES + + K+ ++
Sbjct: 186 IGGESAGSIGLHALMVHESMKPKEECIIHN 215
>gi|137196 [30..266] P-loop containing nucleotide triphosphate hydrolases
Length = 237
Score = 25.1 bits (53), Expect = 1.8
Identities = 15/179 (8%), Positives = 39/179 (21%), Gaps = 17/179 (9%)
Query: 46 TLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLT 105
L++AG S KS ++ + S + V + + +
Sbjct: 26 LLILAGPSKSFKSNFGLTM----------VSSYMRQYPDAVCLFYDSEFGITPAYLRSMG 75
Query: 106 IVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGL-NRKNIQDNRVHCCLYFISPFG 164
+ V + E + E+ + + + N+ +
Sbjct: 76 VDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVS 135
Query: 165 HGLRPVDVGF----MKALHEKVNIVPLIAKADCLVPSE--IRKLKERIREEIDKFGIHV 217
R + + NI + + + +
Sbjct: 136 DMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMFSKTVMGGGTGPMYSADTVFI 194
>gi|730933 [142..476] Cysteine proteinases
Length = 335
Score = 24.9 bits (54), Expect = 2.3
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 207 REEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGS 249
R ++ Y++PE S+E + ++ +LK +A F S
Sbjct: 292 RMDV----TDKYKYPEGSSEERQVHQKALDKLKPNASFGATSS 330
>gi|1001767 [11..214] P-loop containing nucleotide triphosphate hydrolases
Length = 204
Score = 24.7 bits (52), Expect = 2.5
Identities = 5/18 (27%), Positives = 11/18 (60%)
Query: 47 LMVAGESGLGKSTLVHSL 64
L+ ++G+GK+ +L
Sbjct: 4 LVAGCDTGVGKTVTTSAL 21
>gi|1487871 [16..342] Periplasmic binding protein-like I
Length = 327
Score = 24.6 bits (53), Expect = 2.6
Identities = 10/48 (20%), Positives = 18/48 (36%), Gaps = 1/48 (2%)
Query: 200 RKLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVI 247
R R+ + ++G V E S DF +++S V+
Sbjct: 147 RTTHGLARQLLPRYGAGV-VGEEFASLGTRDFAPIIESIQKSGADIVL 193
>gi|1495469 [3..289] P-loop containing nucleotide triphosphate hydrolases
Length = 287
Score = 24.7 bits (52), Expect = 2.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 47 LMVAGESGLGKSTLVHSL 64
+ G+ G+GKST +
Sbjct: 5 IAFYGKGGIGKSTTSQNT 22
>gi|2493387 [94..456] Cytochrome P450
Length = 363
Score = 24.7 bits (53), Expect = 2.8
Identities = 17/192 (8%), Positives = 41/192 (20%), Gaps = 16/192 (8%)
Query: 65 FLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKP 124
+ L+ I+ V + + + + P +T C
Sbjct: 11 LFNPGFNPNYLIGLAPLIADEVVVF---CEQLRQKARTGTVFQLEPLTLRLTVDTICSVT 67
Query: 125 I---TDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYF-ISPFGHGLRPVDVGFMKALHE 180
+ T F + K C P ++
Sbjct: 68 LYVVTPVGRWPFLTPDLEIHSSTTKLRTTPLPQRCNGRSNGPRLELPSTPLRRYLTVRPL 127
Query: 181 KVNIVPLIAKADCLVPSEIRKLKERIREEIDK---FGIHVYQFPECDSDEDEDFKQQDRE 237
+ + L+ I + +R E + + ++D + R
Sbjct: 128 V------MWYNNRLMNRFIDQEVDRAYREQSGRQSKSVISLALRDYMKEKDGSLEDFKRR 181
Query: 238 LKESAPFAVIGS 249
+ +
Sbjct: 182 VAPQLRVFLFAG 193
>gi|2688657 [81..435] Phosphofructokinase
Length = 355
Score = 24.4 bits (53), Expect = 2.9
Identities = 9/78 (11%), Positives = 22/78 (27%), Gaps = 9/78 (11%)
Query: 32 NQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKH 91
+ ++S + +++ E G G+ H D +K
Sbjct: 217 RLLEKES-LEEIPHAVILIAE-GAGQKYFDHFPKKKDDS-------GNLLYEDIGLYIKD 267
Query: 92 TVDIEEKGVKLKLTIVDT 109
+ K ++ T+
Sbjct: 268 KITEYFKAKNIQFTLKYI 285
>gi|1531539 [70..226] P-loop containing nucleotide triphosphate hydrolases
Length = 157
Score = 24.1 bits (51), Expect = 3.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 44 DFTLMVAGESGLGKSTLVHSL 64
+ L V G++ GKS+L+H
Sbjct: 1 ELRLGVLGDARSGKSSLIHRF 21
>gi|2647961 [96..299] P-loop containing nucleotide triphosphate hydrolases
Length = 204
Score = 23.8 bits (50), Expect = 4.7
Identities = 4/27 (14%), Positives = 9/27 (32%), Gaps = 2/27 (7%)
Query: 38 SVKKGFDFTLMVAGESGLGKSTLVHSL 64
++V G G K+ + +
Sbjct: 4 LPNNA--PVILVLGAPGSQKNDISRRI 28
>gi|134579 [59..285] P-loop containing nucleotide triphosphate hydrolases
Length = 227
Score = 23.6 bits (49), Expect = 4.9
Identities = 11/51 (21%), Positives = 20/51 (38%), Gaps = 3/51 (5%)
Query: 14 PEDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSL 64
+++ + GF + V G +++ G G GKSTL+
Sbjct: 10 DISLEELPRFSTGFKEFDRVLGG-GVVPG--SAILIGGNPGAGKSTLLLQT 57
>gi|1280085 [6..334] beta/alpha (TIM)-barrel
Length = 329
Score = 23.3 bits (50), Expect = 5.8
Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 114 DAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVG 173
+ + + W+ + + G ++N++ + L + G+
Sbjct: 146 TEIAHIDTWRALEKLYKE----------GKLKQNVEKLVANILLTIHA---LGVSNFSCN 192
Query: 174 FMKALHEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHV 217
++AL++ + P + +C + ++ +R K G+ V
Sbjct: 193 QLQALYDAAEVKPANQQVECHI----YWPQQELRALCKKLGVTV 232
>gi|809280 [1..209] Glycinamide ribonucleotide transformylase
Length = 209
Score = 23.6 bits (51), Expect = 5.9
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 159 FISPFGHGLRP-VDVGFMKALHEKVNIVPLIA-KADCLVPSEIRKLKERIREEIDKFGIH 216
IS G L+ +D + + + + KAD E + GI
Sbjct: 6 LISGNGSNLQAIIDACKTNKIK--GTVRAVFSNKADAFG-----------LERARQAGIA 52
Query: 217 VYQFPECDSDEDEDFKQ-QDRELKESAPFAVI 247
+ D E + + E+ AP V+
Sbjct: 53 THTLIASAFDSREAYDRELIHEIDMYAPDVVV 84
>gi|1703166 [11..338] beta/alpha (TIM)-barrel
Length = 328
Score = 23.3 bits (50), Expect = 6.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 184 IVPLIAKADCLVPSEIRKLKERIREEIDKFG 214
+ PL + D ++P K E + E+ KF
Sbjct: 18 LFPLAKRNDIILPEGFPKSVEELNEKYKKFR 48
>gi|2624005 [295..479] beta-Prism I
Length = 185
Score = 23.2 bits (49), Expect = 6.4
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 214 GIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSNTVVEAKGQRVRGRLYPWG 268
G + Y + S + F+ QD + ++ I SN+ V +YPWG
Sbjct: 69 GQNKYSYTNNSSINEGSFRGQDTDYGGTSSTINIPSNSYVYNLWTENYEYIYPWG 123
>gi|1072178 [17..364] Phosphoglycerate mutase-like
Length = 348
Score = 23.4 bits (50), Expect = 6.5
Identities = 8/65 (12%), Positives = 19/65 (28%), Gaps = 6/65 (9%)
Query: 84 QTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKPITD----YVDQQFEQYFRD 139
+ + + T E I + P +G+A + + + D Y + +
Sbjct: 108 KWQPVAQLTD--ESIDWVSLGAIDNCPVYGEAQRKSSEYAEVMDQMEKYDAELLQLVRNH 165
Query: 140 ESGLN 144
Sbjct: 166 ADEPI 170
>gi|1350557 [4..271] P-loop containing nucleotide triphosphate hydrolases
Length = 268
Score = 23.1 bits (48), Expect = 6.7
Identities = 12/77 (15%), Positives = 24/77 (30%), Gaps = 2/77 (2%)
Query: 15 EDKQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLYKDRK 74
+D+ G +L + V KG + + G GK+TL + +
Sbjct: 32 PMMRDVQAIPTGSISLDIALGVGGVPKG--RIIEIFGPESSGKTTLCLHIVAEAQKRGGI 89
Query: 75 LLSAEERISQTVEILKH 91
+ + V +
Sbjct: 90 CGYVDAEHALDVGYARK 106
>gi|2650282 [2..154] P-loop containing nucleotide triphosphate hydrolases
Length = 153
Score = 23.2 bits (49), Expect = 7.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 46 TLMVAGESGLGKSTLVH 62
+ V G+ G GK+TL
Sbjct: 21 IVAVVGQYGTGKTTLGL 37
>gi|2635745 [372..520] Aldehyde oxidoreductase, molybdemum cofactor-binding domain
Length = 149
Score = 23.0 bits (49), Expect = 8.6
Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 11/89 (12%)
Query: 196 PSEIRKLKERIREEIDKFGIHVYQFPEC--------DSDEDEDFKQQDRELKES---APF 244
P E+R+ R ++ + S + + L+ A
Sbjct: 2 PLELRRKNIRKPHDLGPLEHRIAPTDGAAQVLNAISKSPILKKTSRNCGYLQRGTGAAIT 61
Query: 245 AVIGSNTVVEAKGQRVRGRLYPWGIVEVE 273
G R L G +
Sbjct: 62 MHGGGLGFGRMDAAGGRLSLSSEGKITAS 90
>gi|2652959 [169..353] P-loop containing nucleotide triphosphate hydrolases
Length = 185
Score = 23.0 bits (48), Expect = 8.7
Identities = 11/94 (11%), Positives = 25/94 (25%)
Query: 47 LMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTI 106
++ G G GK+ + + + + I + K ++ + +
Sbjct: 4 ILFMGGPGGGKTRHAARVADSLADNGLVHICMPDIIRTALGKYKDKYPEWKEANEHYIRG 63
Query: 107 VDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDE 140
P D + E Y R+
Sbjct: 64 ELIPNQLALTLLKAEMGRHPDAMGFFLEGYPREA 97
>gi|2190590 [34..336] Periplasmic binding protein-like I
Length = 303
Score = 22.7 bits (48), Expect = 9.6
Identities = 8/77 (10%), Positives = 18/77 (22%), Gaps = 8/77 (10%)
Query: 204 ERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVI---GSNTVVEAKGQRV 260
++ V + D +F+ E+ P V ++
Sbjct: 153 SGFKKSFTAGKGEV-VKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYA 211
Query: 261 R----GRLYPWGIVEVE 273
L+ G +
Sbjct: 212 AANLGIPLWGPGFLTDG 228
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 1187
Number of sequences better than 10.0: 32
Number of calls to ALIGN: 32
Length of query: 369
Total length of test sequences: 256703
Effective length of test sequences: 208388.0
Effective search space size: 68375022.4
Initial X dropoff for ALIGN: 25.0 bits