analysis of sequence from tem36
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
>sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAEPVD
PIVGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEV
EESVPVIGQLTIQTGSSTKPVEKKPGKTEIQKCSVSAWTDLVFLVDGSWS
VGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQR
DELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITD
GKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYV
KLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEY
QISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYS
IGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKV
EDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITD
GKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKT
NWSPAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVN
VTAEYEDGFSIPLAGEETTEEVKGAPRNLKVTDETTDSFKITWTQAPGRV
LRCRIIYRPVAGGESREVTTPPNQRRRTLENLIPDTKYEVSVIPEYFSGP
GTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGKVKQYLVTYTP
VAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGE
KNLPEDAIHTMIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSK
TLKVDEETENTMRVTWKPAPGKVVNYRVVYRPHGRGKQMVAKVPPTVTST
VLKRLQPQTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTM
SSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAG
TTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTE
WQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRA
RKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDP
DDTHDYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRS
FRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTVLKDLKPETEY
VVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLH
DLTSEPVTVREVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRY
KTPEEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQE
TTRPVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMET
ILNGDENTLVFENLNPNTIYEVSITAIYADESESDDLIGSERTLPILTTQ
APKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNL
RVYDPSTSTLNVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAIL
RNLQPDTSYTVTVVPVYTEGDGGRTSDTGRTLMRGLARNVQVYNPTPNRL
GVRWDPAPGPVLQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLY
SVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNSLSVAWDHADG
PVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVY
KPVGSNEPMEAFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQG
TTLYLNVTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITV
RGSETSHCFTGLSPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTE
PPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFNKVVKFIFNTV
GGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQ
SGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFV
CETATSSCPLIYLDGYTSPGFKMLEAYNLTEKNFASVQGVSLESGSFPSY
SAYRIQKNAFVNQPTADLHPNGLPPSYTIILLFRLLPETPSDPFAIWQIT
DRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEVKTLFYGSFHK
VHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPG
PPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS
IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDSAM
GPRGPPGRPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIAS
QNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPP
GSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP
GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIQGPPGPPGYCDSSQCA
SIPYNGQSYPGSG
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
sec.str. with predator
> sp|Q99715|CA1C_HUMAN
. . . . .
1 MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAEPVD 50
_____HHHHHHHHHHHHHHHHHHH_______EEEEEE_____________
. . . . .
51 PIVGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEV 100
__EEEEEEE________EEEEEE___HHHHHHHEEE_EEEEEEEE_____
. . . . .
101 EESVPVIGQLTIQTGSSTKPVEKKPGKTEIQKCSVSAWTDLVFLVDGSWS 150
_______EEEEEEE______________EEEE_______EEEEEE_____
. . . . .
151 VGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQR 200
_____HHHHHHHHHHHHHH______EEEEEEEEE_____EEEHHHHHHHH
. . . . .
201 DELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITD 250
HHHHHHHHH___________HHHHHHHHH_______EEE___EEEEEE__
. . . . .
251 GKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA 300
____EEEEHHHHHHHH___EEEE__HHHHHHHHHHHHH______EEEEE_
. . . . .
301 NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYV 350
_HHHHHHHHHHHHHHH___HHHHHHH_____EEE_____HHHHHHH____
. . . . .
351 KLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEY 400
____________EEEEEEE________EEE_______EEEEE________
. . . . .
401 QISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYS 450
EEE_____________EEE______EEEEE_____EEE__EEEEE____E
. . . . .
451 IGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKV 500
EE__HHHHHHHHHHHHHHHH______EEEEE_________HHHHHHHH_H
. . . . .
501 EDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITD 550
HHHHHHHH______________HHHHHHEEE___________EEEEEE__
. . . . .
551 GKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE 600
__________HHHHH___EEEEEEEEHHHHHHHHHHH______EEEEEEE
. . . . .
601 DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKT 650
_HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH___________________
. . . . .
651 NWSPAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVN 700
________EEEEEEEEE______EEEEEE_____EEEEE______EEEEE
. . . . .
701 VTAEYEDGFSIPLAGEETTEEVKGAPRNLKVTDETTDSFKITWTQAPGRV 750
EEEE________________________EEEE______EEEE______EE
. . . . .
751 LRCRIIYRPVAGGESREVTTPPNQRRRTLENLIPDTKYEVSVIPEYFSGP 800
EEEEEEE________EEEE____HHHHHHHH_____EEEEEE________
. . . . .
801 GTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGKVKQYLVTYTP 850
___________EEE_______________EEEE______EEEEEEEEE__
. . . . .
851 VAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT 900
_____EEEEEEE_______________EEEEHHHHHHHH___________
. . . . .
901 TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGE 950
__________EEE_________EEEE______EEEEEEEEEE________
. . . . .
951 KNLPEDAIHTMIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSK 1000
______HHHHHHHH______EEEEEEEEE_____________________
. . . . .
1001 TLKVDEETENTMRVTWKPAPGKVVNYRVVYRPHGRGKQMVAKVPPTVTST 1050
EEEE_______EEEEE______EEEEEEEE______EEEEEE_____HHH
. . . . .
1051 VLKRLQPQTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTM 1100
HHHH_______EEEE__________________EEEE_____________
. . . . .
1101 SSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAG 1150
__EEEE_______EEEE_EEEE_______EEEEEE_____HHHHHHHH__
. . . . .
1151 TTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI 1200
____EEE__________EEEEE_EEE_____EEEE_____HHHHHHHHHE
. . . . .
1201 VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTE 1250
EEEE____________HHHHHHHHHEEEE_______EEE_________HH
. . . . .
1251 WQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRA 1300
HHHHHH___HHHHHHHHH_________HHHHHHHHHHHHHHH______HH
. . . . .
1301 RKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDP 1350
HHHEEEEE_________HHHHHHHH____HHHHH____HHHHHHEEE___
. . . . .
1351 DDTHDYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRS 1400
_____EEE___HHHHHHHHHHHHHEEE_____________EEEEE____E
. . . . .
1401 FRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTVLKDLKPETEY 1450
EEEEE________EEEEEEE_______EEEEEE____EEEEEE____EEE
. . . . .
1451 VVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA 1500
EEEEEEEEE_________________EEEEEE______EEEEEEE_____
. . . . .
1501 TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLH 1550
_EEEEEE____________EEEE_________________EEEEEEEHHH
. . . . .
1551 DLTSEPVTVREVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRY 1600
HH_____EEEEEE________EEEEE_____EEEEE______EEEEEEEE
. . . . .
1601 KTPEEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQE 1650
______EEEEEEE________HHHHHHHHHHEEEEEE_____________
. . . . .
1651 TTRPVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMET 1700
__________EEEEEE________________EEEEEE_________EEE
. . . . .
1701 ILNGDENTLVFENLNPNTIYEVSITAIYADESESDDLIGSERTLPILTTQ 1750
EE_____EEEEE______EEEEEE____________EEE____EEEEE__
. . . . .
1751 APKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT 1800
_______EEEEEE_____EEEE______EEEEEEEE__________EEE_
. . . . .
1801 IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNL 1850
_______EEEEE_______EEEEE_____________________EEEEE
. . . . .
1851 RVYDPSTSTLNVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAIL 1900
EE_______EEEE_________EEEEEE__________________EEEE
. . . . .
1901 RNLQPDTSYTVTVVPVYTEGDGGRTSDTGRTLMRGLARNVQVYNPTPNRL 1950
________EEEEEE________________HHHHHH__EEEEE_______
. . . . .
1951 GVRWDPAPGPVLQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLY 2000
EEEE______EEEEEEE__________EEEEE____HHHHHHH______E
. . . . .
2001 SVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNSLSVAWDHADG 2050
EEEEEEEE______________________EEEEE_____EEEEE_____
. . . . .
2051 PVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE 2100
_EEEEEEEEE________EEEE______EEEE_________EEEEEEEE_
. . . . .
2101 DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVY 2150
____________EEE_________HHHHHEEEEE_________EEEEEEE
. . . . .
2151 KPVGSNEPMEAFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQG 2200
E_______HHHHHHHEEEEEE_______EEEEEEEEE_____EEE_____
. . . . .
2201 TTLYLNVTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITV 2250
EEEEEE____EEEEE_____EEE_____HHHHHHHH_________EEEEE
. . . . .
2251 RGSETSHCFTGLSPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTE 2300
__________________EEEEEEE_________EEEEE___________
. . . . .
2301 PPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFNKVVKFIFNTV 2350
_____________________EEEEEEEE_________HHHHHEEEEEE_
. . . . .
2351 GGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN 2400
___________EEEEE________________HHHHHHH___EEEE____
. . . . .
2401 TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQ 2450
____EEEHHHHHHH____________EEEEEEE_____HHHHHHHHHHHH
. . . . .
2451 SGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFV 2500
____EEEEE__________________EEEEEEE___HHHHH__HHHHHH
. . . . .
2501 CETATSSCPLIYLDGYTSPGFKMLEAYNLTEKNFASVQGVSLESGSFPSY 2550
_________EEEE________EEEEEEEE____EEEE_____________
. . . . .
2551 SAYRIQKNAFVNQPTADLHPNGLPPSYTIILLFRLLPETPSDPFAIWQIT 2600
HHHHHHHHHH________________HHHHHHHH__________EEEEE_
. . . . .
2601 DRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEVKTLFYGSFHK 2650
______EEEEEE_____EEEE_________EEEEE____EEEEE____EE
. . . . .
2651 VHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA 2700
EEEEEE___EEEEEEEHHHHHHHHHHH_______HHHHHHHHHHHHHHHH
. . . . .
2701 FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPG 2750
HEEEEEEEEE________________________________________
. . . . .
2751 PPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 2800
__________________________________________________
. . . . .
2801 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDSAM 2850
__________________________________________________
. . . . .
2851 GPRGPPGRPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIAS 2900
_______________________________________________HHH
. . . . .
2901 QNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPP 2950
HHHHHHHHHHHHHHHHH___HHHHHHHH______________________
. . . . .
2951 GSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP 3000
__________________________________________________
. . . . .
3001 GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIQGPPGPPGYCDSSQCA 3050
__________________________________________________
.
3051 SIPYNGQSYPGSG 3063
_____________
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
method : 1
alpha-contents : 0.0 %
beta-contents : 30.6 %
coil-contents : 69.4 %
class : beta
method : 2
alpha-contents : 0.0 %
beta-contents : 21.0 %
coil-contents : 79.0 %
class : beta
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
GPI: learning from metazoa
-5.68 0.00 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 -8.83 -3.56 -12.00 -12.00 0.00 -12.00 0.00 -54.08
0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -10.69 -3.56 -12.00 -12.00 0.00 -12.00 0.00 -49.78
ID: sp|Q99715|CA1C_HUMAN AC: xxx Len: 3050 1:I 3031 Sc: -49.78 Pv: 2.228083e-01 NO_GPI_SITE
GPI: learning from protozoa
-16.90 0.00 0.00 0.00 -4.00 0.00 0.00 0.00 0.00 -9.07 -12.09 -12.00 -12.00 0.00 -12.00 0.00 -78.06
-12.04 0.00 0.00 -0.40 0.00 0.00 0.00 0.00 0.00 -9.35 -12.09 -12.00 -12.00 0.00 -12.00 0.00 -69.86
ID: sp|Q99715|CA1C_HUMAN AC: xxx Len: 3050 1:I 3030 Sc: -69.86 Pv: 3.441914e-01 NO_GPI_SITE
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
# SignalP euk predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
sp|Q99715|C 0.595 282 Y 0.666 24 Y 0.954 5 Y 0.824 Y
# SignalP gram- predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
sp|Q99715|C 0.700 1649 Y 0.529 26 Y 0.987 9 Y 0.750 Y
# SignalP gram+ predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
sp|Q99715|C 0.567 1199 Y 0.448 24 Y 0.993 9 Y 0.904 Y
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
low complexity regions: SEG 12 2.2 2.5
>sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
1-4 MRSR
lppalaalgaalll 5-18
19-68 SSIEAEVDPPSDLNFKIIDENTVHMSWAEP
VDPIVGYRITVDPTTDGPTK
eftlsasttetllselvpete 69-89
90-323 YVVTITSYDEVEESVPVIGQLTIQTGSSTK
PVEKKPGKTEIQKCSVSAWTDLVFLVDGSW
SVGRNNFKYILDFIAALVSAFDIGEEKTRV
GVVQYSSDTRTEFNLNQYYQRDELLAAIKK
IPYKGGNTMTGDAIDYLVKNTFTESAGARV
GFPKVAIIITDGKSQDEVEIPARELRNVGV
EVFSLGIKAADAKELKQIASTPSLNHVFNV
ANFDAIVDIQNEIISQVCSGVDEQ
lgelvsgeevvepps 324-338
339-1906 NLIAMEVSSKYVKLNWNPSPSPVTGYKVIL
TPMTAGSRQHALSVGPQTTTLSVRDLSADT
EYQISVSAMKGMTSSEPISIMEKTQPMKVQ
VECSRGVDIKADIVFLVDGSYSIGIANFVK
VRAFLEVLVKSFEISPNRVQISLVQYSRDP
HTEFTLKKFTKVEDIIEAINTFPYRGGSTN
TGKAMTYVREKIFVPSKGSRSNVPKVMILI
TDGKSSDAFRDPAIKLRNSDVEIFAVGVKD
AVRSELEAIASPPAETHVFTVEDFDAFQRI
SFELTQSICLRIEQELAAIKKKAYVPPKDL
SFSEVTSYGFKTNWSPAGENVFSYHITYKE
AAGDDEVTVVEPASSTSVVLSSLKPETLYL
VNVTAEYEDGFSIPLAGEETTEEVKGAPRN
LKVTDETTDSFKITWTQAPGRVLRCRIIYR
PVAGGESREVTTPPNQRRRTLENLIPDTKY
EVSVIPEYFSGPGTPLTGNAATEEVRGNPR
DLRVSDPTTSTMKLSWSGAPGKVKQYLVTY
TPVAGGETQEVTVRGDTTNTVLQGLKEGTQ
YALSVTALYASGAGDALFGEGTTLEERGSP
QDLVTKDITDTSIGAYWTSAPGMVRGYRVS
WKSLYDDVDTGEKNLPEDAIHTMIENLQPE
TKYRISVFATYSSGEGEPLTGDATTELSQD
SKTLKVDEETENTMRVTWKPAPGKVVNYRV
VYRPHGRGKQMVAKVPPTVTSTVLKRLQPQ
TTYDITVLPIYKMGEGKLRQGSGTTASRFK
SPRNLKTSDPTMSSFRVTWEPAPGEVKGYK
VTFHPTGDDRRLGELVVGPYDNTVVLEELR
AGTTYKVNVFGMFDGGESSPLVGQEMTTLS
DTTVMPILSSGMECLTRAEADIVLLVDGSW
SIGRANFRTVRSFISRIVEVFDIGPKRVQI
ALAQYSGDPRTEWQLNAHRDKKSLLQAVAN
LPYKGGNTLTGMALNFIRQQNFRTQAGMRP
RARKIGVLITDGKSQDDVEAPSKKLKDEGV
ELFAIGIKNADEVELKMIATDPDDTHDYNV
ADFESLSRIVDDLTINLCNSVKGPGDLEAP
SNLVISERTHRSFRVSWTPPSDSVDRYKVE
YYPVSGGKRQEFYVSRMETSTVLKDLKPET
EYVVNVYSVVEDEYSEPLKGTEKTLPVPVV
SLNIYDVGPTTMHVQWQPVGGATGYILSYK
PVKDTEPTRPKEVRLGPTVNDMQLTDLVPN
TEYAVTVQAVLHDLTSEPVTVREVTLPLPR
PQDLKLRDVTHSTMNVFWEPVPGKVRKYIV
RYKTPEEDVKEVEVDRSETSTSLKDLFSQT
LYTVSVSAVHDEGESPPVTAQETTRPVPAP
TNLKITEVTSEGFRGTWDHGASDVSLYRIT
WGPFGSSDKMETILNGDENTLVFENLNPNT
IYEVSITAIYADESESDDLIGSERTLPILT
TQAPKSGPRNLQVYNATSNSLTVKWDPASG
RVQKYRITYQPSTGEGNEQTTTIGGRQNSV
VLQKLKPDTPYTITVSSLYPDGEGGRMTGR
GKTKPLNTVRNLRVYDPSTSTLNVRWDHAE
GNPRQYKLFYAPAAGGPEELVPIPGNTNYA
ILRNLQPD
tsytvtvvpvytegdggrtsdtgrt 1907-1931
1932-2293 LMRGLARNVQVYNPTPNRLGVRWDPAPGPV
LQYRVVYSPVDGTRPSESIVVPGNTRMVHL
ERLIPDTLYSVNLVALYSDGEGNPSPAQGR
TLPRSGPRNLRVFGETTNSLSVAWDHADGP
VQQYRIIYSPTVGDPIDEYTTVPGRRNNVI
LQPLQPDTPYKITVIAVYEDGDGGHLTGNG
RTVGLLPPQNIHISDEWYTRFRVSWDPSPS
PVLGYKIVYKPVGSNEPMEAFVGEMTSYTL
HNLNPSTTYDVNVYAQYDSGLSVPLTDQGT
TLYLNVTDLKTYQIGWDTFCVKWSPHRAAT
SYRLKLSPADGTRGQEITVRGSETSHCFTG
LSPDTDYGVTVFVQTPNLEGPGVSVKEHTT
VK
pteaptepptppppptippa 2294-2313
2314-2746 RDVCKGAKADIVFLTDASWSIGDDNFNKVV
KFIFNTVGGFDEISPAGIQVSFVQYSDEVK
SEFKLNTYNDKALALGALQNIRYRGGNTRT
GKALTFIKEKVLTWESGMRKNVPKVLVVVT
DGRSQDEVKKAALVIQQSGFSVFVVGVADV
DYNELANIASKPSERHVFIVDDFESFEKIE
DNLITFVCETATSSCPLIYLDGYTSPGFKM
LEAYNLTEKNFASVQGVSLESGSFPSYSAY
RIQKNAFVNQPTADLHPNGLPPSYTIILLF
RLLPETPSDPFAIWQITDRDYKPQVGVIAD
PSSKTLSFFNKDTRGEVQTVTFDTEEVKTL
FYGSFHKVHIVVTSKSVKIYIDCYEIIEKD
IKEAGNITTDGYEILGKLLKGERKSAAFQI
QSFDIVCSPVWTSRDRCCDIPSRRDEGKCP
AFPNSCTCTQDSV
gppgppgpaggpgakgprgerg 2747-2768
2769-2770 IS
gaigppgprgdigppgpqgppgpqgpng 2771-2798
2799-2816 LSIPGEQGRQGMKGDAGE
pglpgrtgtpglpgppgpmgppgdrg 2817-2842
2843-2850 FTGKDSAM
gprgppgrpgspgspgvtgpsgkpgkpg 2851-2878
2879-2940 DHGRPGPSGLKGEKGDRGDIASQNMMRAVA
RQVCEQLISGQMNRFNQMLNQIPNDYQSSR
NQ
pgppgppgppgsagargepgpggrpgfpgt 2941-2972
pg
2973-2989 MQGPPGERGLPGEKGER
gtgssgprglpgppgpqgesrtgppgstgs 2990-3030
rgppgppgrpg
3031-3063 NSGIQGPPGPPGYCDSSQCASIPYNGQSYP
GSG
low complexity regions: SEG 25 3.0 3.3
>sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
1-4 MRSR
lppalaalgaalll 5-18
19-57 SSIEAEVDPPSDLNFKIIDENTVHMSWAEP
VDPIVGYRI
tvdpttdgptkeftlsasttetllselvpe 58-118
teyvvtitsydeveesvpvigqltiqtgss
t
119-305 KPVEKKPGKTEIQKCSVSAWTDLVFLVDGS
WSVGRNNFKYILDFIAALVSAFDIGEEKTR
VGVVQYSSDTRTEFNLNQYYQRDELLAAIK
KIPYKGGNTMTGDAIDYLVKNTFTESAGAR
VGFPKVAIIITDGKSQDEVEIPARELRNVG
VEVFSLGIKAADAKELKQIASTPSLNHVFN
VANFDAI
vdiqneiisqvcsgvdeqlgelvsgeevve 306-335
336-673 PPSNLIAMEVSSKYVKLNWNPSPSPVTGYK
VILTPMTAGSRQHALSVGPQTTTLSVRDLS
ADTEYQISVSAMKGMTSSEPISIMEKTQPM
KVQVECSRGVDIKADIVFLVDGSYSIGIAN
FVKVRAFLEVLVKSFEISPNRVQISLVQYS
RDPHTEFTLKKFTKVEDIIEAINTFPYRGG
STNTGKAMTYVREKIFVPSKGSRSNVPKVM
ILITDGKSSDAFRDPAIKLRNSDVEIFAVG
VKDAVRSELEAIASPPAETHVFTVEDFDAF
QRISFELTQSICLRIEQELAAIKKKAYVPP
KDLSFSEVTSYGFKTNWSPAGENVFSYHIT
YKEAAGDD
evtvvepasstsvvlsslkpetlylvnvta 674-706
eye
707-1904 DGFSIPLAGEETTEEVKGAPRNLKVTDETT
DSFKITWTQAPGRVLRCRIIYRPVAGGESR
EVTTPPNQRRRTLENLIPDTKYEVSVIPEY
FSGPGTPLTGNAATEEVRGNPRDLRVSDPT
TSTMKLSWSGAPGKVKQYLVTYTPVAGGET
QEVTVRGDTTNTVLQGLKEGTQYALSVTAL
YASGAGDALFGEGTTLEERGSPQDLVTKDI
TDTSIGAYWTSAPGMVRGYRVSWKSLYDDV
DTGEKNLPEDAIHTMIENLQPETKYRISVF
ATYSSGEGEPLTGDATTELSQDSKTLKVDE
ETENTMRVTWKPAPGKVVNYRVVYRPHGRG
KQMVAKVPPTVTSTVLKRLQPQTTYDITVL
PIYKMGEGKLRQGSGTTASRFKSPRNLKTS
DPTMSSFRVTWEPAPGEVKGYKVTFHPTGD
DRRLGELVVGPYDNTVVLEELRAGTTYKVN
VFGMFDGGESSPLVGQEMTTLSDTTVMPIL
SSGMECLTRAEADIVLLVDGSWSIGRANFR
TVRSFISRIVEVFDIGPKRVQIALAQYSGD
PRTEWQLNAHRDKKSLLQAVANLPYKGGNT
LTGMALNFIRQQNFRTQAGMRPRARKIGVL
ITDGKSQDDVEAPSKKLKDEGVELFAIGIK
NADEVELKMIATDPDDTHDYNVADFESLSR
IVDDLTINLCNSVKGPGDLEAPSNLVISER
THRSFRVSWTPPSDSVDRYKVEYYPVSGGK
RQEFYVSRMETSTVLKDLKPETEYVVNVYS
VVEDEYSEPLKGTEKTLPVPVVSLNIYDVG
PTTMHVQWQPVGGATGYILSYKPVKDTEPT
RPKEVRLGPTVNDMQLTDLVPNTEYAVTVQ
AVLHDLTSEPVTVREVTLPLPRPQDLKLRD
VTHSTMNVFWEPVPGKVRKYIVRYKTPEED
VKEVEVDRSETSTSLKDLFSQTLYTVSVSA
VHDEGESPPVTAQETTRPVPAPTNLKITEV
TSEGFRGTWDHGASDVSLYRITWGPFGSSD
KMETILNGDENTLVFENLNPNTIYEVSITA
IYADESESDDLIGSERTLPILTTQAPKSGP
RNLQVYNATSNSLTVKWDPASGRVQKYRIT
YQPSTGEGNEQTTTIGGRQNSVVLQKLKPD
TPYTITVSSLYPDGEGGRMTGRGKTKPLNT
VRNLRVYDPSTSTLNVRWDHAEGNPRQYKL
FYAPAAGGPEELVPIPGNTNYAILRNLQ
pdtsytvtvvpvytegdggrtsdtgrt 1905-1931
1932-2293 LMRGLARNVQVYNPTPNRLGVRWDPAPGPV
LQYRVVYSPVDGTRPSESIVVPGNTRMVHL
ERLIPDTLYSVNLVALYSDGEGNPSPAQGR
TLPRSGPRNLRVFGETTNSLSVAWDHADGP
VQQYRIIYSPTVGDPIDEYTTVPGRRNNVI
LQPLQPDTPYKITVIAVYEDGDGGHLTGNG
RTVGLLPPQNIHISDEWYTRFRVSWDPSPS
PVLGYKIVYKPVGSNEPMEAFVGEMTSYTL
HNLNPSTTYDVNVYAQYDSGLSVPLTDQGT
TLYLNVTDLKTYQIGWDTFCVKWSPHRAAT
SYRLKLSPADGTRGQEITVRGSETSHCFTG
LSPDTDYGVTVFVQTPNLEGPGVSVKEHTT
VK
pteaptepptppppptippa 2294-2313
2314-2746 RDVCKGAKADIVFLTDASWSIGDDNFNKVV
KFIFNTVGGFDEISPAGIQVSFVQYSDEVK
SEFKLNTYNDKALALGALQNIRYRGGNTRT
GKALTFIKEKVLTWESGMRKNVPKVLVVVT
DGRSQDEVKKAALVIQQSGFSVFVVGVADV
DYNELANIASKPSERHVFIVDDFESFEKIE
DNLITFVCETATSSCPLIYLDGYTSPGFKM
LEAYNLTEKNFASVQGVSLESGSFPSYSAY
RIQKNAFVNQPTADLHPNGLPPSYTIILLF
RLLPETPSDPFAIWQITDRDYKPQVGVIAD
PSSKTLSFFNKDTRGEVQTVTFDTEEVKTL
FYGSFHKVHIVVTSKSVKIYIDCYEIIEKD
IKEAGNITTDGYEILGKLLKGERKSAAFQI
QSFDIVCSPVWTSRDRCCDIPSRRDEGKCP
AFPNSCTCTQDSV
gppgppgpaggpgakgprgergisgaigpp 2747-2901
gprgdigppgpqgppgpqgpnglsipgeqg
rqgmkgdagepglpgrtgtpglpgppgpmg
ppgdrgftgkdsamgprgppgrpgspgspg
vtgpsgkpgkpgdhgrpgpsglkgekgdrg
diasq
2902-2935 NMMRAVARQVCEQLISGQMNRFNQMLNQIP
NDYQ
ssrnqpgppgppgppgsagargepgpggrp 2936-3042
gfpgtpgmqgppgerglpgekgergtgssg
prglpgppgpqgesrtgppgstgsrgppgp
pgrpgnsgiqgppgppg
3043-3063 YCDSSQCASIPYNGQSYPGSG
low complexity regions: SEG 45 3.4 3.75
>sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
1-46 MRSRLPPALAALGAALLLSSIEAEVDPPSD
LNFKIIDENTVHMSWA
epvdpivgyritvdpttdgptkeftlsast 47-151
tetllselvpeteyvvtitsydeveesvpv
igqltiqtgsstkpvekkpgkteiqkcsvs
awtdlvflvdgswsv
152-1391 GRNNFKYILDFIAALVSAFDIGEEKTRVGV
VQYSSDTRTEFNLNQYYQRDELLAAIKKIP
YKGGNTMTGDAIDYLVKNTFTESAGARVGF
PKVAIIITDGKSQDEVEIPARELRNVGVEV
FSLGIKAADAKELKQIASTPSLNHVFNVAN
FDAIVDIQNEIISQVCSGVDEQLGELVSGE
EVVEPPSNLIAMEVSSKYVKLNWNPSPSPV
TGYKVILTPMTAGSRQHALSVGPQTTTLSV
RDLSADTEYQISVSAMKGMTSSEPISIMEK
TQPMKVQVECSRGVDIKADIVFLVDGSYSI
GIANFVKVRAFLEVLVKSFEISPNRVQISL
VQYSRDPHTEFTLKKFTKVEDIIEAINTFP
YRGGSTNTGKAMTYVREKIFVPSKGSRSNV
PKVMILITDGKSSDAFRDPAIKLRNSDVEI
FAVGVKDAVRSELEAIASPPAETHVFTVED
FDAFQRISFELTQSICLRIEQELAAIKKKA
YVPPKDLSFSEVTSYGFKTNWSPAGENVFS
YHITYKEAAGDDEVTVVEPASSTSVVLSSL
KPETLYLVNVTAEYEDGFSIPLAGEETTEE
VKGAPRNLKVTDETTDSFKITWTQAPGRVL
RCRIIYRPVAGGESREVTTPPNQRRRTLEN
LIPDTKYEVSVIPEYFSGPGTPLTGNAATE
EVRGNPRDLRVSDPTTSTMKLSWSGAPGKV
KQYLVTYTPVAGGETQEVTVRGDTTNTVLQ
GLKEGTQYALSVTALYASGAGDALFGEGTT
LEERGSPQDLVTKDITDTSIGAYWTSAPGM
VRGYRVSWKSLYDDVDTGEKNLPEDAIHTM
IENLQPETKYRISVFATYSSGEGEPLTGDA
TTELSQDSKTLKVDEETENTMRVTWKPAPG
KVVNYRVVYRPHGRGKQMVAKVPPTVTSTV
LKRLQPQTTYDITVLPIYKMGEGKLRQGSG
TTASRFKSPRNLKTSDPTMSSFRVTWEPAP
GEVKGYKVTFHPTGDDRRLGELVVGPYDNT
VVLEELRAGTTYKVNVFGMFDGGESSPLVG
QEMTTLSDTTVMPILSSGMECLTRAEADIV
LLVDGSWSIGRANFRTVRSFISRIVEVFDI
GPKRVQIALAQYSGDPRTEWQLNAHRDKKS
LLQAVANLPYKGGNTLTGMALNFIRQQNFR
TQAGMRPRARKIGVLITDGKSQDDVEAPSK
KLKDEGVELFAIGIKNADEVELKMIATDPD
DTHDYNVADFESLSRIVDDLTINLCNSVKG
PGDLEAPSNL
viserthrsfrvswtppsdsvdrykveyyp 1392-1499
vsggkrqefyvsrmetstvlkdlkpeteyv
vnvysvvedeyseplkgtektlpvpvvsln
iydvgpttmhvqwqpvgg
1500-2263 ATGYILSYKPVKDTEPTRPKEVRLGPTVND
MQLTDLVPNTEYAVTVQAVLHDLTSEPVTV
REVTLPLPRPQDLKLRDVTHSTMNVFWEPV
PGKVRKYIVRYKTPEEDVKEVEVDRSETST
SLKDLFSQTLYTVSVSAVHDEGESPPVTAQ
ETTRPVPAPTNLKITEVTSEGFRGTWDHGA
SDVSLYRITWGPFGSSDKMETILNGDENTL
VFENLNPNTIYEVSITAIYADESESDDLIG
SERTLPILTTQAPKSGPRNLQVYNATSNSL
TVKWDPASGRVQKYRITYQPSTGEGNEQTT
TIGGRQNSVVLQKLKPDTPYTITVSSLYPD
GEGGRMTGRGKTKPLNTVRNLRVYDPSTST
LNVRWDHAEGNPRQYKLFYAPAAGGPEELV
PIPGNTNYAILRNLQPDTSYTVTVVPVYTE
GDGGRTSDTGRTLMRGLARNVQVYNPTPNR
LGVRWDPAPGPVLQYRVVYSPVDGTRPSES
IVVPGNTRMVHLERLIPDTLYSVNLVALYS
DGEGNPSPAQGRTLPRSGPRNLRVFGETTN
SLSVAWDHADGPVQQYRIIYSPTVGDPIDE
YTTVPGRRNNVILQPLQPDTPYKITVIAVY
EDGDGGHLTGNGRTVGLLPPQNIHISDEWY
TRFRVSWDPSPSPVLGYKIVYKPVGSNEPM
EAFVGEMTSYTLHNLNPSTTYDVNVYAQYD
SGLSVPLTDQGTTLYLNVTDLKTYQIGWDT
FCVKWSPHRAATSYRLKLSPADGTRGQEIT
VRGSETSHCFTGLS
pdtdygvtvfvqtpnlegpgvsvkehttvk 2264-2323
pteaptepptppppptippardvckgakad
2324-2746 IVFLTDASWSIGDDNFNKVVKFIFNTVGGF
DEISPAGIQVSFVQYSDEVKSEFKLNTYND
KALALGALQNIRYRGGNTRTGKALTFIKEK
VLTWESGMRKNVPKVLVVVTDGRSQDEVKK
AALVIQQSGFSVFVVGVADVDYNELANIAS
KPSERHVFIVDDFESFEKIEDNLITFVCET
ATSSCPLIYLDGYTSPGFKMLEAYNLTEKN
FASVQGVSLESGSFPSYSAYRIQKNAFVNQ
PTADLHPNGLPPSYTIILLFRLLPETPSDP
FAIWQITDRDYKPQVGVIADPSSKTLSFFN
KDTRGEVQTVTFDTEEVKTLFYGSFHKVHI
VVTSKSVKIYIDCYEIIEKDIKEAGNITTD
GYEILGKLLKGERKSAAFQIQSFDIVCSPV
WTSRDRCCDIPSRRDEGKCPAFPNSCTCTQ
DSV
gppgppgpaggpgakgprgergisgaigpp 2747-2897
gprgdigppgpqgppgpqgpnglsipgeqg
rqgmkgdagepglpgrtgtpglpgppgpmg
ppgdrgftgkdsamgprgppgrpgspgspg
vtgpsgkpgkpgdhgrpgpsglkgekgdrg
d
2898-2935 IASQNMMRAVARQVCEQLISGQMNRFNQML
NQIPNDYQ
ssrnqpgppgppgppgsagargepgpggrp 2936-3042
gfpgtpgmqgppgerglpgekgergtgssg
prglpgppgpqgesrtgppgstgsrgppgp
pgrpgnsgiqgppgppg
3043-3063 YCDSSQCASIPYNGQSYPGSG
low complexity regions: XNU
# Score cutoff = 21, Search from offsets 1 to 4
# both members of each repeat flagged
# lambda = 0.347, K = 0.200, H = 0.664
>sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAEPVDPIVGYRITVD
PTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEVEESVPVIGQLTIQTGSSTKP
VEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVG
FPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSP
VTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGENVF
SYHITYKeaagddevtvvepasstsvvlSSLKPETLYLVNVTAEYEDGFSIPLAGEETTE
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRCRIIYRPVAGGESREVTTPPNQRRRTLE
NLIPDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGK
VKQYLVTYTPVAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHT
MIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSKTLKVDEETENTMRVTWKPAP
GKVVNYRVVYRPHGRGKQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKMGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHDYNVADFESLSRIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHDLTSEPVTVR
EVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSETSTS
LKDLFSQTLYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLKITEVTSEGFRGTWDHGAS
DVSLYRITWGPFGSSDKMETILNGDENTLVFENLNPNTIYEVSITAIYADESESDDLIGS
ERTLPILTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTL
NVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYTEG
DGGRTSDTGRTLMRGLARNVQVYNPTPNRLGVRWDPAPGPVLQYRVVYSPVDGTRPSESI
VVPGNTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNS
LSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPME
AFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQIGWDTF
CVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPNLE
GPGVSVKEHTTVKpteaptepptppppptippaRDVCKGAKADIVFLTDASWSIGDDNFN
KVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVVGV
ADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTSPG
FKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRIQKNAFVNQPTADLHPNGLPPSYTII
LLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEV
KTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVgppgppgpaggpga
kgprgergisgaigppgprgdigppgpqgppgpqgpnglsipgeqgrqgmkgdagepglp
grtgtpglpgppgpmgppgdrgFTGKDsamgprgppgrpgspgspgvtgpsgkpgkpgdh
grpgpsglkgekgdrgdIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRnq
pgppgppgppgsagargepgpggrpgfpgtpgmqgppgerglpgekgergtgssgprglp
gppgpqgesrtgppgstgsrgppgppgrpgnsgiqgppgppgYCDSSQCASIPYNGQSYP
GSG
1 - 667 MRSRLPPALA ALGAALLLSS IEAEVDPPSD LNFKIIDENT VHMSWAEPVD PIVGYRITVD
PTTDGPTKEF TLSASTTETL LSELVPETEY VVTITSYDEV EESVPVIGQL TIQTGSSTKP
VEKKPGKTEI QKCSVSAWTD LVFLVDGSWS VGRNNFKYIL DFIAALVSAF DIGEEKTRVG
VVQYSSDTRT EFNLNQYYQR DELLAAIKKI PYKGGNTMTG DAIDYLVKNT FTESAGARVG
FPKVAIIITD GKSQDEVEIP ARELRNVGVE VFSLGIKAAD AKELKQIAST PSLNHVFNVA
NFDAIVDIQN EIISQVCSGV DEQLGELVSG EEVVEPPSNL IAMEVSSKYV KLNWNPSPSP
VTGYKVILTP MTAGSRQHAL SVGPQTTTLS VRDLSADTEY QISVSAMKGM TSSEPISIME
KTQPMKVQVE CSRGVDIKAD IVFLVDGSYS IGIANFVKVR AFLEVLVKSF EISPNRVQIS
LVQYSRDPHT EFTLKKFTKV EDIIEAINTF PYRGGSTNTG KAMTYVREKI FVPSKGSRSN
VPKVMILITD GKSSDAFRDP AIKLRNSDVE IFAVGVKDAV RSELEAIASP PAETHVFTVE
DFDAFQRISF ELTQSICLRI EQELAAIKKK AYVPPKDLSF SEVTSYGFKT NWSPAGENVF
SYHITYK
668 - 688 eaa gddevtvvep asstsvvl
689 - 2293 SS LKPETLYLVN VTAEYEDGFS IPLAGEETTE EVKGAPRNLK VTDETTDSFK ITWTQAPG
RV LRCRIIYRPV AGGESREVTT PPNQRRRTLE NLIPDTKYEV SVIPEYFSGP GTPLTGNA
AT EEVRGNPRDL RVSDPTTSTM KLSWSGAPGK VKQYLVTYTP VAGGETQEVT VRGDTTNT
VL QGLKEGTQYA LSVTALYASG AGDALFGEGT TLEERGSPQD LVTKDITDTS IGAYWTSA
PG MVRGYRVSWK SLYDDVDTGE KNLPEDAIHT MIENLQPETK YRISVFATYS SGEGEPLT
GD ATTELSQDSK TLKVDEETEN TMRVTWKPAP GKVVNYRVVY RPHGRGKQMV AKVPPTVT
ST VLKRLQPQTT YDITVLPIYK MGEGKLRQGS GTTASRFKSP RNLKTSDPTM SSFRVTWE
PA PGEVKGYKVT FHPTGDDRRL GELVVGPYDN TVVLEELRAG TTYKVNVFGM FDGGESSP
LV GQEMTTLSDT TVMPILSSGM ECLTRAEADI VLLVDGSWSI GRANFRTVRS FISRIVEV
FD IGPKRVQIAL AQYSGDPRTE WQLNAHRDKK SLLQAVANLP YKGGNTLTGM ALNFIRQQ
NF RTQAGMRPRA RKIGVLITDG KSQDDVEAPS KKLKDEGVEL FAIGIKNADE VELKMIAT
DP DDTHDYNVAD FESLSRIVDD LTINLCNSVK GPGDLEAPSN LVISERTHRS FRVSWTPP
SD SVDRYKVEYY PVSGGKRQEF YVSRMETSTV LKDLKPETEY VVNVYSVVED EYSEPLKG
TE KTLPVPVVSL NIYDVGPTTM HVQWQPVGGA TGYILSYKPV KDTEPTRPKE VRLGPTVN
DM QLTDLVPNTE YAVTVQAVLH DLTSEPVTVR EVTLPLPRPQ DLKLRDVTHS TMNVFWEP
VP GKVRKYIVRY KTPEEDVKEV EVDRSETSTS LKDLFSQTLY TVSVSAVHDE GESPPVTA
QE TTRPVPAPTN LKITEVTSEG FRGTWDHGAS DVSLYRITWG PFGSSDKMET ILNGDENT
LV FENLNPNTIY EVSITAIYAD ESESDDLIGS ERTLPILTTQ APKSGPRNLQ VYNATSNS
LT VKWDPASGRV QKYRITYQPS TGEGNEQTTT IGGRQNSVVL QKLKPDTPYT ITVSSLYP
DG EGGRMTGRGK TKPLNTVRNL RVYDPSTSTL NVRWDHAEGN PRQYKLFYAP AAGGPEEL
VP IPGNTNYAIL RNLQPDTSYT VTVVPVYTEG DGGRTSDTGR TLMRGLARNV QVYNPTPN
RL GVRWDPAPGP VLQYRVVYSP VDGTRPSESI VVPGNTRMVH LERLIPDTLY SVNLVALY
SD GEGNPSPAQG RTLPRSGPRN LRVFGETTNS LSVAWDHADG PVQQYRIIYS PTVGDPID
EY TTVPGRRNNV ILQPLQPDTP YKITVIAVYE DGDGGHLTGN GRTVGLLPPQ NIHISDEW
YT RFRVSWDPSP SPVLGYKIVY KPVGSNEPME AFVGEMTSYT LHNLNPSTTY DVNVYAQY
DS GLSVPLTDQG TTLYLNVTDL KTYQIGWDTF CVKWSPHRAA TSYRLKLSPA DGTRGQEI
TV RGSETSHCFT GLSPDTDYGV TVFVQTPNLE GPGVSVKEHT TVK
2294 - 2313 pteapte pptpppppti ppa
2314 - 2746 RDVCKGA KADIVFLTDA SWSIGDDNFN KVVKFIFNTV GGFDEISPAG IQVSFVQYSD EVK
SEFKLNT YNDKALALGA LQNIRYRGGN TRTGKALTFI KEKVLTWESG MRKNVPKVLV VVT
DGRSQDE VKKAALVIQQ SGFSVFVVGV ADVDYNELAN IASKPSERHV FIVDDFESFE KIE
DNLITFV CETATSSCPL IYLDGYTSPG FKMLEAYNLT EKNFASVQGV SLESGSFPSY SAY
RIQKNAF VNQPTADLHP NGLPPSYTII LLFRLLPETP SDPFAIWQIT DRDYKPQVGV IAD
PSSKTLS FFNKDTRGEV QTVTFDTEEV KTLFYGSFHK VHIVVTSKSV KIYIDCYEII EKD
IKEAGNI TTDGYEILGK LLKGERKSAA FQIQSFDIVC SPVWTSRDRC CDIPSRRDEG KCP
AFPNSCT CTQDSV
2747 - 2842 gppg ppgpaggpga kgprgergis gaigppgprg digppgpqgp pgpqgpngls ipgeqg
rqgm kgdagepglp grtgtpglpg ppgpmgppgd rg
2843 - 2847 FTGKD
2848 - 2897 sam gprgppgrpg spgspgvtgp sgkpgkpgdh grpgpsglkg ekgdrgd
2898 - 2938 IAS QNMMRAVARQ VCEQLISGQM NRFNQMLNQI PNDYQSSR
2939 - 3042 nq pgppgppgpp gsagargepg pggrpgfpgt pgmqgppger glpgekgerg tgssgprg
lp gppgpqgesr tgppgstgsr gppgppgrpg nsgiqgppgp pg
3043 - 3063 YCDSSQCA SIPYNGQSYP GSG
low complexity regions: DUST
>sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAEPVDPIVGYRITVD
PTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEVEESVPVIGQLTIQTGSSTKP
VEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVG
FPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSP
VTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGENVF
SYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVNVTAEYEDGFSIPLAGEETTE
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRCRIIYRPVAGGESREVTTPPNQRRRTLE
NLIPDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGK
VKQYLVTYTPVAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHT
MIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSKTLKVDEETENTMRVTWKPAP
GKVVNYRVVYRPHGRGKQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKMGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHDYNVADFESLSRIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHDLTSEPVTVR
EVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSETSTS
LKDLFSQTLYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLKITEVTSEGFRGTWDHGAS
DVSLYRITWGPFGSSDKMETILNGDENTLVFENLNPNTIYEVSITAIYADESESDDLIGS
ERTLPILTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTL
NVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYTEG
DGGRTSDTGRTLMRGLARNVQVYNPTPNRLGVRWDPAPGPVLQYRVVYSPVDGTRPSESI
VVPGNTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNS
LSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPME
AFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQIGWDTF
CVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPNLE
GPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFN
KVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVVGV
ADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTSPG
FKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRIQKNAFVNQPTADLHPNGLPPSYTII
LLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEV
KTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGA
KGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLP
GRTGTPGLPGPPGPMGPPGDRGFTGKDSAMGPRGPPGRPGSPGSPGVTGPSGKPGKPGDH
GRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQ
PGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP
GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIQGPPGPPGYCDSSQCASIPYNGQSYP
GSG
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
coiled coil prediction for sp|Q99715|CA1C_HUMAN
sequence: 3050 amino acids, 21 residue(s) in coiled coil state
Coil 1 * 1603* 1624* EEDVKEVEVDRSETSTSLKDLF
. | . | . | . | . | . 60
MRSRLPPALA ALGAALLLSS IEAEVDPPSD LNFKIIDENT VHMSWAEPVD PIVGYRITVD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 120
PTTDGPTKEF TLSASTTETL LSELVPETEY VVTITSYDEV EESVPVIGQL TIQTGSSTKP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 180
VEKKPGKTEI QKCSVSAWTD LVFLVDGSWS VGRNNFKYIL DFIAALVSAF DIGEEKTRVG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 240
VVQYSSDTRT EFNLNQYYQR DELLAAIKKI PYKGGNTMTG DAIDYLVKNT FTESAGARVG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 300
FPKVAIIITD GKSQDEVEIP ARELRNVGVE VFSLGIKAAD AKELKQIAST PSLNHVFNVA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 360
NFDAIVDIQN EIISQVCSGV DEQLGELVSG EEVVEPPSNL IAMEVSSKYV KLNWNPSPSP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 420
VTGYKVILTP MTAGSRQHAL SVGPQTTTLS VRDLSADTEY QISVSAMKGM TSSEPISIME
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 480
KTQPMKVQVE CSRGVDIKAD IVFLVDGSYS IGIANFVKVR AFLEVLVKSF EISPNRVQIS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 540
LVQYSRDPHT EFTLKKFTKV EDIIEAINTF PYRGGSTNTG KAMTYVREKI FVPSKGSRSN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 600
VPKVMILITD GKSSDAFRDP AIKLRNSDVE IFAVGVKDAV RSELEAIASP PAETHVFTVE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 660
DFDAFQRISF ELTQSICLRI EQELAAIKKK AYVPPKDLSF SEVTSYGFKT NWSPAGENVF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ 1111111111 1111111111 1~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~3444 4444444444 4~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 720
SYHITYKEAA GDDEVTVVEP ASSTSVVLSS LKPETLYLVN VTAEYEDGFS IPLAGEETTE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 780
EVKGAPRNLK VTDETTDSFK ITWTQAPGRV LRCRIIYRPV AGGESREVTT PPNQRRRTLE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 840
NLIPDTKYEV SVIPEYFSGP GTPLTGNAAT EEVRGNPRDL RVSDPTTSTM KLSWSGAPGK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 900
VKQYLVTYTP VAGGETQEVT VRGDTTNTVL QGLKEGTQYA LSVTALYASG AGDALFGEGT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 960
TLEERGSPQD LVTKDITDTS IGAYWTSAPG MVRGYRVSWK SLYDDVDTGE KNLPEDAIHT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1020
MIENLQPETK YRISVFATYS SGEGEPLTGD ATTELSQDSK TLKVDEETEN TMRVTWKPAP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1080
GKVVNYRVVY RPHGRGKQMV AKVPPTVTST VLKRLQPQTT YDITVLPIYK MGEGKLRQGS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1140
GTTASRFKSP RNLKTSDPTM SSFRVTWEPA PGEVKGYKVT FHPTGDDRRL GELVVGPYDN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1200
TVVLEELRAG TTYKVNVFGM FDGGESSPLV GQEMTTLSDT TVMPILSSGM ECLTRAEADI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1260
VLLVDGSWSI GRANFRTVRS FISRIVEVFD IGPKRVQIAL AQYSGDPRTE WQLNAHRDKK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~111111111 * 14 M'95 -w local
. | . | . | . | . | . 1320
SLLQAVANLP YKGGNTLTGM ALNFIRQQNF RTQAGMRPRA RKIGVLITDG KSQDDVEAPS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
11111~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1380
KKLKDEGVEL FAIGIKNADE VELKMIATDP DDTHDYNVAD FESLSRIVDD LTINLCNSVK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~111111111 11111~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1440
GPGDLEAPSN LVISERTHRS FRVSWTPPSD SVDRYKVEYY PVSGGKRQEF YVSRMETSTV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1500
LKDLKPETEY VVNVYSVVED EYSEPLKGTE KTLPVPVVSL NIYDVGPTTM HVQWQPVGGA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1560
TGYILSYKPV KDTEPTRPKE VRLGPTVNDM QLTDLVPNTE YAVTVQAVLH DLTSEPVTVR
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1620
EVTLPLPRPQ DLKLRDVTHS TMNVFWEPVP GKVRKYIVRY KTPEEDVKEV EVDRSETSTS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~7777777 7777777777 * 21 M'95 -w border
---------- ---------- ---------- ---------- ---efgabcd efgabcdefg * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~3333333 3333333333 * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~7777777 7777777777 * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~3333333 3333333~~~ * 14 M'95 -w local
. | . | . | . | . | . 1680
LKDLFSQTLY TVSVSAVHDE GESPPVTAQE TTRPVPAPTN LKITEVTSEG FRGTWDHGAS
7777~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
abcd------ ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
3333~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
77771~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1740
DVSLYRITWG PFGSSDKMET ILNGDENTLV FENLNPNTIY EVSITAIYAD ESESDDLIGS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1800
ERTLPILTTQ APKSGPRNLQ VYNATSNSLT VKWDPASGRV QKYRITYQPS TGEGNEQTTT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1860
IGGRQNSVVL QKLKPDTPYT ITVSSLYPDG EGGRMTGRGK TKPLNTVRNL RVYDPSTSTL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1920
NVRWDHAEGN PRQYKLFYAP AAGGPEELVP IPGNTNYAIL RNLQPDTSYT VTVVPVYTEG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1980
DGGRTSDTGR TLMRGLARNV QVYNPTPNRL GVRWDPAPGP VLQYRVVYSP VDGTRPSESI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2040
VVPGNTRMVH LERLIPDTLY SVNLVALYSD GEGNPSPAQG RTLPRSGPRN LRVFGETTNS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2100
LSVAWDHADG PVQQYRIIYS PTVGDPIDEY TTVPGRRNNV ILQPLQPDTP YKITVIAVYE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2160
DGDGGHLTGN GRTVGLLPPQ NIHISDEWYT RFRVSWDPSP SPVLGYKIVY KPVGSNEPME
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2220
AFVGEMTSYT LHNLNPSTTY DVNVYAQYDS GLSVPLTDQG TTLYLNVTDL KTYQIGWDTF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2280
CVKWSPHRAA TSYRLKLSPA DGTRGQEITV RGSETSHCFT GLSPDTDYGV TVFVQTPNLE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2340
GPGVSVKEHT TVKPTEAPTE PPTPPPPPTI PPARDVCKGA KADIVFLTDA SWSIGDDNFN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2400
KVVKFIFNTV GGFDEISPAG IQVSFVQYSD EVKSEFKLNT YNDKALALGA LQNIRYRGGN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2460
TRTGKALTFI KEKVLTWESG MRKNVPKVLV VVTDGRSQDE VKKAALVIQQ SGFSVFVVGV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2520
ADVDYNELAN IASKPSERHV FIVDDFESFE KIEDNLITFV CETATSSCPL IYLDGYTSPG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2580
FKMLEAYNLT EKNFASVQGV SLESGSFPSY SAYRIQKNAF VNQPTADLHP NGLPPSYTII
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2640
LLFRLLPETP SDPFAIWQIT DRDYKPQVGV IADPSSKTLS FFNKDTRGEV QTVTFDTEEV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2700
KTLFYGSFHK VHIVVTSKSV KIYIDCYEII EKDIKEAGNI TTDGYEILGK LLKGERKSAA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2760
FQIQSFDIVC SPVWTSRDRC CDIPSRRDEG KCPAFPNSCT CTQDSVGPPG PPGPAGGPGA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2820
KGPRGERGIS GAIGPPGPRG DIGPPGPQGP PGPQGPNGLS IPGEQGRQGM KGDAGEPGLP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2880
GRTGTPGLPG PPGPMGPPGD RGFTGKDSAM GPRGPPGRPG SPGSPGVTGP SGKPGKPGDH
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2940
GRPGPSGLKG EKGDRGDIAS QNMMRAVARQ VCEQLISGQM NRFNQMLNQI PNDYQSSRNQ
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 3000
PGPPGPPGPP GSAGARGEPG PGGRPGFPGT PGMQGPPGER GLPGEKGERG TGSSGPRGLP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . |
GPPGPQGESR TGPPGSTGSR GPPGPPGRPG NSGIQGPPGP PGYCDSSQCA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
---------- ---------- ---------- ---------- ----------
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
prediction of transmembrane regions with toppred2
***********************************
*TOPPREDM with eukaryotic function*
***********************************
tem36.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem36.___inter___
(1 sequences)
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAEPVD
PIVGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEV
EESVPVIGQLTIQTGSSTKPVEKKPGKTEIQKCSVSAWTDLVFLVDGSWS
VGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQR
DELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITD
GKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYV
KLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEY
QISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYS
IGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKV
EDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITD
GKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKT
NWSPAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVN
VTAEYEDGFSIPLAGEETTEEVKGAPRNLKVTDETTDSFKITWTQAPGRV
LRCRIIYRPVAGGESREVTTPPNQRRRTLENLIPDTKYEVSVIPEYFSGP
GTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGKVKQYLVTYTP
VAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGE
KNLPEDAIHTMIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSK
TLKVDEETENTMRVTWKPAPGKVVNYRVVYRPHGRGKQMVAKVPPTVTST
VLKRLQPQTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTM
SSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAG
TTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTE
WQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRA
RKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDP
DDTHDYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRS
FRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTVLKDLKPETEY
VVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLH
DLTSEPVTVREVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRY
KTPEEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQE
TTRPVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMET
ILNGDENTLVFENLNPNTIYEVSITAIYADESESDDLIGSERTLPILTTQ
APKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNL
RVYDPSTSTLNVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAIL
RNLQPDTSYTVTVVPVYTEGDGGRTSDTGRTLMRGLARNVQVYNPTPNRL
GVRWDPAPGPVLQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLY
SVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNSLSVAWDHADG
PVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVY
KPVGSNEPMEAFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQG
TTLYLNVTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITV
RGSETSHCFTGLSPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTE
PPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFNKVVKFIFNTV
GGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQ
SGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFV
CETATSSCPLIYLDGYTSPGFKMLEAYNLTEKNFASVQGVSLESGSFPSY
SAYRIQKNAFVNQPTADLHPNGLPPSYTIILLFRLLPETPSDPFAIWQIT
DRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEVKTLFYGSFHK
VHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPG
PPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS
IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDSAM
GPRGPPGRPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIAS
QNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPP
GSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP
GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIQGPPGPPGYCDSSQCA
SIPYNGQSYPGSG
(p)rokaryotic or (e)ukaryotic: e
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 16 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 3 23 1.255 Certain
2 355 375 0.623 Putative
3 876 896 0.831 Putative
4 1174 1194 0.658 Putative
5 2443 2463 1.058 Certain
6 2495 2515 0.803 Putative
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 3 4 5 6
Loop length 2 852 277 1248 31 548
K+R profile 3.00 + 3.00
+ + +
CYT-EXT prof - 1.06 -
1.27 1.49 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.04
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.52
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 2 4 5 6
Loop length 2 331 798 1248 31 548
K+R profile 3.00 + 3.00
+ + +
CYT-EXT prof - 1.21 -
1.21 1.49 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.31
-> Orientation: N-in
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 1 2 3 5 6
Loop length 2 331 500 1546 31 548
K+R profile 3.00 + 3.00
+ + +
CYT-EXT prof - 1.13 -
1.21 1.42 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.31
-> Orientation: N-in
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 1 5 6
Loop length 2 2419 31 548
K+R profile 3.00 3.00
+ +
CYT-EXT prof - -
1.45 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.51
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.27
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 1 2 3 4 5
Loop length 2 331 500 277 1248 600
K+R profile 3.00 + +
+ + +
CYT-EXT prof - 1.13 1.49
1.21 1.06 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.44
-> Orientation: N-in
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 1 3 4 5
Loop length 2 852 277 1248 600
K+R profile 3.00 + +
+ +
CYT-EXT prof - 1.06 0.80
1.27 1.49
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.08
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.90
-> Orientation: N-in
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 2 4 5
Loop length 2 331 798 1248 600
K+R profile 3.00 + +
+ +
CYT-EXT prof - 1.21 0.80
1.21 1.49
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.69
-> Orientation: N-in
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 1 4 5
Loop length 2 1150 1248 600
K+R profile 3.00 +
+ +
CYT-EXT prof - 1.49
1.32 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.15
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.63
-> Orientation: N-in
----------------------------------------------------------------------
Structure 9
Transmembrane segments included in this structure:
Segment 1 2 3 5
Loop length 2 331 500 1546 600
K+R profile 3.00 + +
+ +
CYT-EXT prof - 1.13 0.80
1.21 1.42
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.03
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.69
-> Orientation: N-in
----------------------------------------------------------------------
Structure 10
Transmembrane segments included in this structure:
Segment 1 3 5
Loop length 2 852 1546 600
K+R profile 3.00 +
+ +
CYT-EXT prof - 1.42
1.27 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.58
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.65
-> Orientation: N-in
----------------------------------------------------------------------
Structure 11
Transmembrane segments included in this structure:
Segment 1 2 5
Loop length 2 331 2067 600
K+R profile 3.00 +
+ +
CYT-EXT prof - 1.42
1.21 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.06
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.59
-> Orientation: N-in
----------------------------------------------------------------------
Structure 12
Transmembrane segments included in this structure:
Segment 1 5
Loop length 2 2419 600
K+R profile 3.00 +
+
CYT-EXT prof - 0.80
1.45
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 1.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.65
-> Orientation: N-in
----------------------------------------------------------------------
Structure 13
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6
Loop length 2 331 500 277 1248 31 548
K+R profile 3.00 + + +
+ + 3.00
CYT-EXT prof - 1.13 1.49 0.82
1.21 1.06 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.00
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 1.18
-> Orientation: N-out
----------------------------------------------------------------------
Structure 14
Transmembrane segments included in this structure:
Segment 1 4 5 6
Loop length 2 1150 1248 31 548
K+R profile 3.00 + +
+ 3.00
CYT-EXT prof - 1.49 0.82
1.32 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.07
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 0.99
-> Orientation: N-out
----------------------------------------------------------------------
Structure 15
Transmembrane segments included in this structure:
Segment 1 3 5 6
Loop length 2 852 1546 31 548
K+R profile 3.00 + +
+ 3.00
CYT-EXT prof - 1.42 0.82
1.27 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.29
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 0.97
-> Orientation: N-out
----------------------------------------------------------------------
Structure 16
Transmembrane segments included in this structure:
Segment 1 2 5 6
Loop length 2 331 2067 31 548
K+R profile 3.00 + +
+ 3.00
CYT-EXT prof - 1.42 0.82
1.21 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.03
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 1.03
-> Orientation: N-out
----------------------------------------------------------------------
"tem36" 3063
3 23 #t 1.25521
355 375 #f 0.622917
876 896 #f 0.83125
1174 1194 #f 0.658333
2443 2463 #t 1.05833
2495 2515 #f 0.803125
************************************
*TOPPREDM with prokaryotic function*
************************************
tem36.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem36.___inter___
(1 sequences)
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAEPVD
PIVGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEV
EESVPVIGQLTIQTGSSTKPVEKKPGKTEIQKCSVSAWTDLVFLVDGSWS
VGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQR
DELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITD
GKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYV
KLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEY
QISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYS
IGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKV
EDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITD
GKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKT
NWSPAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVN
VTAEYEDGFSIPLAGEETTEEVKGAPRNLKVTDETTDSFKITWTQAPGRV
LRCRIIYRPVAGGESREVTTPPNQRRRTLENLIPDTKYEVSVIPEYFSGP
GTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGKVKQYLVTYTP
VAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGE
KNLPEDAIHTMIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSK
TLKVDEETENTMRVTWKPAPGKVVNYRVVYRPHGRGKQMVAKVPPTVTST
VLKRLQPQTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTM
SSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAG
TTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTE
WQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRA
RKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDP
DDTHDYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRS
FRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTVLKDLKPETEY
VVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLH
DLTSEPVTVREVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRY
KTPEEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQE
TTRPVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMET
ILNGDENTLVFENLNPNTIYEVSITAIYADESESDDLIGSERTLPILTTQ
APKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNL
RVYDPSTSTLNVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAIL
RNLQPDTSYTVTVVPVYTEGDGGRTSDTGRTLMRGLARNVQVYNPTPNRL
GVRWDPAPGPVLQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLY
SVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNSLSVAWDHADG
PVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVY
KPVGSNEPMEAFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQG
TTLYLNVTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITV
RGSETSHCFTGLSPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTE
PPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFNKVVKFIFNTV
GGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQ
SGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFV
CETATSSCPLIYLDGYTSPGFKMLEAYNLTEKNFASVQGVSLESGSFPSY
SAYRIQKNAFVNQPTADLHPNGLPPSYTIILLFRLLPETPSDPFAIWQIT
DRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEVKTLFYGSFHK
VHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPG
PPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS
IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDSAM
GPRGPPGRPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIAS
QNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPP
GSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP
GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIQGPPGPPGYCDSSQCA
SIPYNGQSYPGSG
(p)rokaryotic or (e)ukaryotic: p
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 16 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 3 23 1.255 Certain
2 355 375 0.623 Putative
3 876 896 0.831 Putative
4 1174 1194 0.658 Putative
5 2443 2463 1.058 Certain
6 2495 2515 0.803 Putative
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 3 4 5 6
Loop length 2 852 277 1248 31 548
K+R profile 2.00 + 3.00
+ + +
CYT-EXT prof - 1.06 -
1.27 1.49 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.04
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.52
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 2 4 5 6
Loop length 2 331 798 1248 31 548
K+R profile 2.00 + 3.00
+ + +
CYT-EXT prof - 1.21 -
1.21 1.49 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.31
-> Orientation: N-in
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 1 2 3 5 6
Loop length 2 331 500 1546 31 548
K+R profile 2.00 + 3.00
+ + +
CYT-EXT prof - 1.13 -
1.21 1.42 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.31
-> Orientation: N-in
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 1 5 6
Loop length 2 2419 31 548
K+R profile 2.00 3.00
+ +
CYT-EXT prof - -
1.45 0.82
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 5.00
Tm probability: 0.51
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -2.27
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 1 2 3 4 5
Loop length 2 331 500 277 1248 600
K+R profile 2.00 + +
+ + +
CYT-EXT prof - 1.13 1.49
1.21 1.06 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.44
-> Orientation: N-in
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 1 3 4 5
Loop length 2 852 277 1248 600
K+R profile 2.00 + +
+ +
CYT-EXT prof - 1.06 0.80
1.27 1.49
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.08
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.90
-> Orientation: N-in
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 2 4 5
Loop length 2 331 798 1248 600
K+R profile 2.00 + +
+ +
CYT-EXT prof - 1.21 0.80
1.21 1.49
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.69
-> Orientation: N-in
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 1 4 5
Loop length 2 1150 1248 600
K+R profile 2.00 +
+ +
CYT-EXT prof - 1.49
1.32 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.15
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.63
-> Orientation: N-in
----------------------------------------------------------------------
Structure 9
Transmembrane segments included in this structure:
Segment 1 2 3 5
Loop length 2 331 500 1546 600
K+R profile 2.00 + +
+ +
CYT-EXT prof - 1.13 0.80
1.21 1.42
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.03
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.69
-> Orientation: N-in
----------------------------------------------------------------------
Structure 10
Transmembrane segments included in this structure:
Segment 1 3 5
Loop length 2 852 1546 600
K+R profile 2.00 +
+ +
CYT-EXT prof - 1.42
1.27 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.58
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.65
-> Orientation: N-in
----------------------------------------------------------------------
Structure 11
Transmembrane segments included in this structure:
Segment 1 2 5
Loop length 2 331 2067 600
K+R profile 2.00 +
+ +
CYT-EXT prof - 1.42
1.21 0.80
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 0.06
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.59
-> Orientation: N-in
----------------------------------------------------------------------
Structure 12
Transmembrane segments included in this structure:
Segment 1 5
Loop length 2 2419 600
K+R profile 2.00 +
+
CYT-EXT prof - 0.80
1.45
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 2.00
Tm probability: 1.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.65
-> Orientation: N-in
----------------------------------------------------------------------
Structure 13
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6
Loop length 2 331 500 277 1248 31 548
K+R profile 2.00 + + +
+ + 3.00
CYT-EXT prof - 1.13 1.49 0.82
1.21 1.06 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -1.00
Tm probability: 0.00
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 1.18
-> Orientation: N-out
----------------------------------------------------------------------
Structure 14
Transmembrane segments included in this structure:
Segment 1 4 5 6
Loop length 2 1150 1248 31 548
K+R profile 2.00 + +
+ 3.00
CYT-EXT prof - 1.49 0.82
1.32 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -1.00
Tm probability: 0.07
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 0.99
-> Orientation: N-out
----------------------------------------------------------------------
Structure 15
Transmembrane segments included in this structure:
Segment 1 3 5 6
Loop length 2 852 1546 31 548
K+R profile 2.00 + +
+ 3.00
CYT-EXT prof - 1.42 0.82
1.27 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -1.00
Tm probability: 0.29
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 0.97
-> Orientation: N-out
----------------------------------------------------------------------
Structure 16
Transmembrane segments included in this structure:
Segment 1 2 5 6
Loop length 2 331 2067 31 548
K+R profile 2.00 + +
+ 3.00
CYT-EXT prof - 1.42 0.82
1.21 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -1.00
Tm probability: 0.03
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 6.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 1.03
-> Orientation: N-out
----------------------------------------------------------------------
"tem36" 3063
3 23 #t 1.25521
355 375 #f 0.622917
876 896 #f 0.83125
1174 1194 #f 0.658333
2443 2463 #t 1.05833
2495 2515 #f 0.803125
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
NOW EXECUTING: /bio_software/1D/stat/saps/saps-stroh/SAPS.SSPA/saps /people/maria/tem36.___saps___
SAPS. Version of April 11, 1996.
Date run: Sun Jan 7 20:25:26 2001
File: /people/maria/tem36.___saps___
ID sp|Q99715|CA1C_HUMAN
DE COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
number of residues: 3063; molecular weight: 333.2 kdal
1 MRSRLPPALA ALGAALLLSS IEAEVDPPSD LNFKIIDENT VHMSWAEPVD PIVGYRITVD
61 PTTDGPTKEF TLSASTTETL LSELVPETEY VVTITSYDEV EESVPVIGQL TIQTGSSTKP
121 VEKKPGKTEI QKCSVSAWTD LVFLVDGSWS VGRNNFKYIL DFIAALVSAF DIGEEKTRVG
181 VVQYSSDTRT EFNLNQYYQR DELLAAIKKI PYKGGNTMTG DAIDYLVKNT FTESAGARVG
241 FPKVAIIITD GKSQDEVEIP ARELRNVGVE VFSLGIKAAD AKELKQIAST PSLNHVFNVA
301 NFDAIVDIQN EIISQVCSGV DEQLGELVSG EEVVEPPSNL IAMEVSSKYV KLNWNPSPSP
361 VTGYKVILTP MTAGSRQHAL SVGPQTTTLS VRDLSADTEY QISVSAMKGM TSSEPISIME
421 KTQPMKVQVE CSRGVDIKAD IVFLVDGSYS IGIANFVKVR AFLEVLVKSF EISPNRVQIS
481 LVQYSRDPHT EFTLKKFTKV EDIIEAINTF PYRGGSTNTG KAMTYVREKI FVPSKGSRSN
541 VPKVMILITD GKSSDAFRDP AIKLRNSDVE IFAVGVKDAV RSELEAIASP PAETHVFTVE
601 DFDAFQRISF ELTQSICLRI EQELAAIKKK AYVPPKDLSF SEVTSYGFKT NWSPAGENVF
661 SYHITYKEAA GDDEVTVVEP ASSTSVVLSS LKPETLYLVN VTAEYEDGFS IPLAGEETTE
721 EVKGAPRNLK VTDETTDSFK ITWTQAPGRV LRCRIIYRPV AGGESREVTT PPNQRRRTLE
781 NLIPDTKYEV SVIPEYFSGP GTPLTGNAAT EEVRGNPRDL RVSDPTTSTM KLSWSGAPGK
841 VKQYLVTYTP VAGGETQEVT VRGDTTNTVL QGLKEGTQYA LSVTALYASG AGDALFGEGT
901 TLEERGSPQD LVTKDITDTS IGAYWTSAPG MVRGYRVSWK SLYDDVDTGE KNLPEDAIHT
961 MIENLQPETK YRISVFATYS SGEGEPLTGD ATTELSQDSK TLKVDEETEN TMRVTWKPAP
1021 GKVVNYRVVY RPHGRGKQMV AKVPPTVTST VLKRLQPQTT YDITVLPIYK MGEGKLRQGS
1081 GTTASRFKSP RNLKTSDPTM SSFRVTWEPA PGEVKGYKVT FHPTGDDRRL GELVVGPYDN
1141 TVVLEELRAG TTYKVNVFGM FDGGESSPLV GQEMTTLSDT TVMPILSSGM ECLTRAEADI
1201 VLLVDGSWSI GRANFRTVRS FISRIVEVFD IGPKRVQIAL AQYSGDPRTE WQLNAHRDKK
1261 SLLQAVANLP YKGGNTLTGM ALNFIRQQNF RTQAGMRPRA RKIGVLITDG KSQDDVEAPS
1321 KKLKDEGVEL FAIGIKNADE VELKMIATDP DDTHDYNVAD FESLSRIVDD LTINLCNSVK
1381 GPGDLEAPSN LVISERTHRS FRVSWTPPSD SVDRYKVEYY PVSGGKRQEF YVSRMETSTV
1441 LKDLKPETEY VVNVYSVVED EYSEPLKGTE KTLPVPVVSL NIYDVGPTTM HVQWQPVGGA
1501 TGYILSYKPV KDTEPTRPKE VRLGPTVNDM QLTDLVPNTE YAVTVQAVLH DLTSEPVTVR
1561 EVTLPLPRPQ DLKLRDVTHS TMNVFWEPVP GKVRKYIVRY KTPEEDVKEV EVDRSETSTS
1621 LKDLFSQTLY TVSVSAVHDE GESPPVTAQE TTRPVPAPTN LKITEVTSEG FRGTWDHGAS
1681 DVSLYRITWG PFGSSDKMET ILNGDENTLV FENLNPNTIY EVSITAIYAD ESESDDLIGS
1741 ERTLPILTTQ APKSGPRNLQ VYNATSNSLT VKWDPASGRV QKYRITYQPS TGEGNEQTTT
1801 IGGRQNSVVL QKLKPDTPYT ITVSSLYPDG EGGRMTGRGK TKPLNTVRNL RVYDPSTSTL
1861 NVRWDHAEGN PRQYKLFYAP AAGGPEELVP IPGNTNYAIL RNLQPDTSYT VTVVPVYTEG
1921 DGGRTSDTGR TLMRGLARNV QVYNPTPNRL GVRWDPAPGP VLQYRVVYSP VDGTRPSESI
1981 VVPGNTRMVH LERLIPDTLY SVNLVALYSD GEGNPSPAQG RTLPRSGPRN LRVFGETTNS
2041 LSVAWDHADG PVQQYRIIYS PTVGDPIDEY TTVPGRRNNV ILQPLQPDTP YKITVIAVYE
2101 DGDGGHLTGN GRTVGLLPPQ NIHISDEWYT RFRVSWDPSP SPVLGYKIVY KPVGSNEPME
2161 AFVGEMTSYT LHNLNPSTTY DVNVYAQYDS GLSVPLTDQG TTLYLNVTDL KTYQIGWDTF
2221 CVKWSPHRAA TSYRLKLSPA DGTRGQEITV RGSETSHCFT GLSPDTDYGV TVFVQTPNLE
2281 GPGVSVKEHT TVKPTEAPTE PPTPPPPPTI PPARDVCKGA KADIVFLTDA SWSIGDDNFN
2341 KVVKFIFNTV GGFDEISPAG IQVSFVQYSD EVKSEFKLNT YNDKALALGA LQNIRYRGGN
2401 TRTGKALTFI KEKVLTWESG MRKNVPKVLV VVTDGRSQDE VKKAALVIQQ SGFSVFVVGV
2461 ADVDYNELAN IASKPSERHV FIVDDFESFE KIEDNLITFV CETATSSCPL IYLDGYTSPG
2521 FKMLEAYNLT EKNFASVQGV SLESGSFPSY SAYRIQKNAF VNQPTADLHP NGLPPSYTII
2581 LLFRLLPETP SDPFAIWQIT DRDYKPQVGV IADPSSKTLS FFNKDTRGEV QTVTFDTEEV
2641 KTLFYGSFHK VHIVVTSKSV KIYIDCYEII EKDIKEAGNI TTDGYEILGK LLKGERKSAA
2701 FQIQSFDIVC SPVWTSRDRC CDIPSRRDEG KCPAFPNSCT CTQDSVGPPG PPGPAGGPGA
2761 KGPRGERGIS GAIGPPGPRG DIGPPGPQGP PGPQGPNGLS IPGEQGRQGM KGDAGEPGLP
2821 GRTGTPGLPG PPGPMGPPGD RGFTGKDSAM GPRGPPGRPG SPGSPGVTGP SGKPGKPGDH
2881 GRPGPSGLKG EKGDRGDIAS QNMMRAVARQ VCEQLISGQM NRFNQMLNQI PNDYQSSRNQ
2941 PGPPGPPGPP GSAGARGEPG PGGRPGFPGT PGMQGPPGER GLPGEKGERG TGSSGPRGLP
3001 GPPGPQGESR TGPPGSTGSR GPPGPPGRPG NSGIQGPPGP PGYCDSSQCA SIPYNGQSYP
3061 GSG
--------------------------------------------------------------------------------
COMPOSITIONAL ANALYSIS (extremes relative to: swp23s)
A :158( 5.2%); C : 22( 0.7%); D :172( 5.6%); E :195( 6.4%); F : 91( 3.0%)
G :281( 9.2%); H : 31( 1.0%); I :148( 4.8%); K :155( 5.1%); L :203( 6.6%)
M : 45( 1.5%); N :118( 3.9%); P :261( 8.5%); Q :105( 3.4%); R :158( 5.2%)
S :242( 7.9%); T :266( 8.7%); V :270( 8.8%); W : 30( 1.0%); Y :112( 3.7%)
KR : 313 ( 10.2%); ED : 367 ( 12.0%); AGP : 700 ( 22.9%);
KRED : 680 ( 22.2%); KR-ED : -54 ( -1.8%); FIKMNY : 669 ( 21.8%);
LVIFM : 757 ( 24.7%); ST : 508 ( 16.6%).
--------------------------------------------------------------------------------
CHARGE DISTRIBUTIONAL ANALYSIS
1 0+0+000000 0000000000 0-0-0-000- 000+00--00 000000-00- 00000+000-
61 000-000+-0 0000000-00 00-000-0-0 0000000--0 --00000000 00000000+0
121 0-++00+0-0 0+0000000- 00000-0000 00+000+000 -000000000 -00--+0+00
181 000000-0+0 -00000000+ --00000++0 00+0000000 -00-000+00 00-0000+00
241 00+000000- 0+00--0-00 0+-0+0000- 000000+00- 0+-0+00000 0000000000
301 00-000-000 -000000000 --000-0000 --00-00000 000-000+00 +000000000
361 0000+00000 00000+0000 0000000000 0+-000-0-0 0000000+00 000-00000-
421 +0000+000- 00+00-0+0- 00000-0000 0000000+0+ 000-000+00 -0000+0000
481 00000+-000 -000++00+0 --00-00000 00+0000000 +00000+-+0 0000+00+00
541 00+000000- 0+00-00+-0 00+0+00-0- 000000+-00 +0-0-00000 00-000000-
601 -0-000+000 -0000000+0 -0-0000+++ 00000+-000 0-000000+0 000000-000
661 000000+-00 0---0000-0 0000000000 0+0-000000 000-0--000 00000--00-
721 -0+000+00+ 00--00-00+ 00000000+0 0+0+000+00 000-0+-000 0000+++00-
781 0000-0+0-0 0000-00000 0000000000 --0+000+-0 +00-000000 +00000000+
841 0+00000000 0000-00-00 0+0-000000 000+-00000 0000000000 00-0000-00
901 00--+0000- 000+-00-00 0000000000 00+00+000+ 000--0-00- +000--0000
961 00-0000-0+ 0+00000000 00-0-0000- 000-000-0+ 00+0---0-0 00+000+000
1021 0+0000+000 +000+0+000 0+00000000 00++000000 0-0000000+ 00-0+0+000
1081 00000+0+00 +00+00-000 000+000-00 00-0+00+00 00000--++0 0-000000-0
1141 0000--0+00 000+000000 0-00-00000 00-00000-0 0000000000 -000+0-0-0
1201 0000-00000 0+000+00+0 000+00-00- 000++00000 00000-0+0- 000000+-++
1261 0000000000 0+00000000 00000+0000 +00000+0+0 ++000000-0 +00--0-000
1321 ++0+--00-0 00000+00-- 0-0+0000-0 --00-0000- 0-000+00-- 000000000+
1381 000-0-0000 0000-+00+0 0+0000000- 00-+0+0-00 00000++0-0 000+0-0000
1441 0+-0+0-0-0 00000000-- -00-00+00- +000000000 000-000000 0000000000
1501 0000000+00 +-0-00+0+- 0+000000-0 000-00000- 0000000000 -000-0000+
1561 -000000+00 -0+0+-0000 000000-000 0+0++000+0 +00---0+-0 -0-+0-0000
1621 0+-0000000 00000000-- 0-0000000- 00+0000000 0+00-000-0 0+000-0000
1681 -0000+0000 00000-+0-0 0000--0000 0-00000000 -00000000- -0-0--0000
1741 -+00000000 00+000+000 0000000000 0+0-0000+0 0+0+000000 00-00-0000
1801 000+000000 0+0+0-0000 00000000-0 -00+000+0+ 0+00000+00 +00-000000
1861 00+0-00-00 0+00+00000 00000--000 0000000000 +0000-0000 00000000-0
1921 -00+00-00+ 000+000+00 00000000+0 00+0-00000 0000+00000 0-00+00-00
1981 000000+000 0-+000-000 000000000- 0-00000000 +000+000+0 0+000-0000
2041 00000-00-0 00000+0000 0000-00--0 00000++000 0000000-00 0+0000000-
2101 -0-0000000 0+00000000 00000--000 +0+000-000 000000+000 +00000-00-
2161 0000-00000 0000000000 -0000000-0 0000000-00 00000000-0 +000000-00
2221 00+0000+00 000+0+0000 -00+00-000 +00-000000 0000-0-000 000000000-
2281 000000+-00 00+00-000- 0000000000 000+-00+00 +0-00000-0 00000--000
2341 +00+000000 000--00000 000000000- -0+0-0+000 00-+000000 0000+0+000
2401 0+00+00000 +-+0000-00 0++000+000 000-0+00-- 0++0000000 0000000000
2461 0-0-00-000 000+00-+00 000--0-00- +0--000000 0-00000000 000-000000
2521 0+00-00000 -+00000000 00-0000000 000+00+000 000000-000 0000000000
2581 000+000-00 0-00000000 -+-0+00000 00-000+000 000+-0+0-0 00000-0--0
2641 +00000000+ 0000000+00 +000-00-00 -+-0+-0000 00-00-000+ 00+0-++000
2701 000000-000 000000+-+0 0-000++--0 +000000000 000-000000 0000000000
2761 +00+0-+000 00000000+0 -000000000 0000000000 000-00+000 +0-00-0000
2821 0+00000000 000000000- +0000+-000 00+0000+00 0000000000 00+00+00-0
2881 0+000000+0 -+0-+0-000 0000+000+0 00-0000000 0+00000000 00-0000+00
2941 0000000000 00000+0-00 000+000000 00000000-+ 0000-+0-+0 000000+000
3001 0000000-0+ 000000000+ 0000000+00 0000000000 0000-00000 0000000000
3061 000
A. CHARGE CLUSTERS.
Positive charge clusters (cmin = 11/30 or 14/45 or 17/60): none
Negative charge clusters (cmin = 12/30 or 16/45 or 19/60): none
Mixed charge clusters (cmin = 18/30 or 23/45 or 29/60): none
B. HIGH SCORING (UN)CHARGED SEGMENTS.
There are no high scoring positive charge segments.
There are no high scoring negative charge segments.
There are no high scoring mixed charge segments.
There are no high scoring uncharged segments.
C. CHARGE RUNS AND PATTERNS.
pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)|
lmin0 5 | 6 | 8 | 44 | 11 | 11 | 15 | 13 | 14 | 18 | 6 | 8 |
lmin1 7 | 7 | 10 | 53 | 13 | 14 | 18 | 16 | 17 | 21 | 8 | 10 |
lmin2 8 | 9 | 12 | 59 | 15 | 15 | 20 | 18 | 19 | 24 | 9 | 12 |
(Significance level: 0.010000; Minimal displayed length: 6)
There are no charge runs or patterns exceeding the given minimal lengths.
Run count statistics:
+ runs >= 4: 0
- runs >= 4: 0
* runs >= 5: 0
0 runs >= 30: 0
--------------------------------------------------------------------------------
DISTRIBUTION OF OTHER AMINO ACID TYPES
1. HIGH SCORING SEGMENTS.
There are no high scoring hydrophobic segments.
There are no high scoring transmembrane segments.
2. SPACINGS OF C.
H2N-132-C-183-C-113-C-185-C-135-C-438-C-183-C-844-C-36-C-58-C-183-C-6-C-157-C-43-C-9-C-C-10-C-6-C-1-C-170-C-131-C-4-C-14-COOH
2*. SPACINGS OF C and H. (additional deluxe function for ALEX)
H2N-41-H-90-C-161-H-21-C-60-H-52-C-57-H-105-H-21-C-45-H-89-C-205-H-73-H-88-H-69-C-63-H-97-H-21-C-21-H-92-H-58-H-28-H-58-H-38-H-188-H-123-H-56-H-58-H-16-H-48-H-48-C-5-H-29-H-C-30-H-27-C-161-H-21-C-6-C-60-H-79-H-2-H-13-C-43-C-9-C-C-10-C-6-C-1-C-138-H-31-C-131-C-4-C-14-COOH
--------------------------------------------------------------------------------
REPETITIVE STRUCTURES.
A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet.
Repeat core block length: 6
Aligned matching blocks:
[ 86- 92] PETEYVV
[1446-1452] PETEYVV
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[ 142- 148]-( -7)-[ 142- 156]--------[ ]--------[ 144- 150]
[ 442- 448]--------[ ]--------[ 439- 456]-( -13)-[ 444- 450]
[1201-1207]-( -7)-[1201-1215]-( -18)-[1198-1215]-( -13)-[1203-1209]
[ 142- 148] VFLVDGS
[ 442- 448] VFLVDGS
[1201-1207] VLLVDGS
[ 142- 156] VFLVDGSWSVGRNNF
[1201-1215] VLLVDGSWSIGRANF
[ 439- 456] ADIVFLVDGSYSIGIANF
[1198-1215] ADIVLLVDGSWSIGRANF
[ 144- 150] LVDGSWS
[ 444- 450] LVDGSYS
[1203-1209] LVDGSWS
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[ 204- 209] LAAIKK
[ 624- 629] LAAIKK
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[ 211- 220]-( 27)-[ 248- 253]-( -6)-[ 248- 258]
[ ]--------[ 547- 553]--------[ ]
[1270-1279]-( 26)-[1306-1312]-( -6)-[1307-1317]
[ 211- 220] PYKGGNTMTG
[1270-1279] PYKGGNTLTG
[ 248- 253] _ITDGKS
[ 547- 553] LITDGKS
[1306-1312] LITDGKS
[ 248- 258] ITDGKSQDEVE
[1307-1317] ITDGKSQDDVE
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[ 356- 365] PSPSPVTGYK
[2138-2147] PSPSPVLGYK
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[ 438- 444] KADIVFL
[2321-2327] KADIVFL
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[ 759- 769] PVAGGESREVT
[ 850- 860] PVAGGETQEVT
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[1436-1444] ETSTVLKDL
[1616-1624] ETSTSLKDL
with superset:
[1048-1053] TSTVLK
[1437-1442] TSTVLK
[1617-1622] TSTSLK
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[1754-1759] SGPRNL
[2026-2031] SGPRNL
[2994-2999] SGPRGL
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[2749-2758] PGPPGPAGGP
[2785-2793] PGPQGPPG_P
[2829-2837] PGPPG_PMGP
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[2773-2778] IGPPGP
[2782-2787] IGPPGP
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[2788-2793] QGPPGP
[3035-3040] QGPPGP
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[2829-2839] PGPPGPMGPPG
[2941-2951] PGPPGPPGPPG
with superset:
[2749-2754] PGPPGP
[2785-2790] PGPQGP
[2791-2796] PGPQGP
[2829-2834] PGPPGP
[2941-2946] PGPPGP
[2944-2949] PGPPGP
[3000-3005] PGPPGP
and:
[2749-2758] PGPPGPAGGP
[2785-2793] PGPQGP_PGP
[2829-2837] PGPPGP_MGP
[2941-2949] PGPPGP_PGP
______________________________
[2854-2870] GPPGRPGSPGSPGVTGP
[2960-2976] GPGGRPGFPGTPGMQGP
with superset:
[2747-2753] GPPGPPG
[2854-2860] GPPGRPG
[2942-2948] GPPGPPG
[2960-2966] GPGGRPG
[3024-3030] GPPGRPG
[3036-3042] GPPGPPG
and:
[2854-2863] GPPGRPGSPG
[2942-2951] GPPGPPGPPG
[2960-2969] GPGGRPGFPG
Highly repetitive regions:
From 2747 to 3042 with major motif GPPGPPGP.
B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet.
(i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C)
Repeat core block length: 10
Aligned matching blocks:
[ 243- 258]-( -16)-[ 243- 257]-( -17)-[ 241- 265]-( -6)-[ 260- 281]
[ ]--------[ 543- 557]-( -17)-[ 541- 563]-( -4)-[ 560- 579]
[1302-1317]-( -16)-[1302-1316]--------[ ]--------[ ]
[ ]--------[2427-2441]--------[ ]--------[ ]
[ 243- 258] +isiiio-s+on--i-
[1302-1317] +isiiio-s+on--i-
[ 243- 257] +isiiio-s+on--i
[ 543- 557] +imiiio-s+oo-si
[1302-1316] +isiiio-s+on--i
[2427-2441] +iiiiio-s+on--i
[ 241- 265] ip+isiiio-s+on--i-ips+-i+
[ 541- 563] ip+imiiio-s+oo-si+-ps__i+
[ 260- 281] ps+-i+nisi-iioisi+ss-s
[ 560- 579] psi+i+no-i-iisisi+__-s
______________________________
[ 438- 463] +s-iiiii-soaoisisnii+i+sii
[2321-2346] +s-iiiio-soaois--nin+ii+ii
with superset:
[ 439- 456] s-iiiii-soaoisisni
[1198-1215] s-iiiii-soaois+sni
[2322-2339] s-iiiio-soaois--ni
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MULTIPLETS.
A. AMINO ACID ALPHABET.
1. Total number of amino acid multiplets: 184 (Expected range: 143--223)
2. Histogram of spacings between consecutive amino acid multiplets:
(1-5) 62 (6-10) 35 (11-20) 38 (>=21) 50
3. Clusters of amino acid multiplets (cmin = 11/30 or 14/45 or 17/60): none
4. Significant specific amino acid altplet counts:
Letters Observed (Critical number)
LN 33 (31)
at 31 (l= 2) 193 (l= 3) 293 (l= 2) 339 (l= 2) 352 (l= 2)
728 (l= 2) 781 (l= 2) 952 (l= 2) 964 (l= 2) 1092 (l= 2)
1253 (l= 2) 1268 (l= 2) 1282 (l= 2) 1374 (l= 2) 1390 (l= 2)
1480 (l= 2) 1660 (l= 2) 1702 (l= 2) 1713 (l= 3) 1758 (l= 2)
1844 (l= 2) 1849 (l= 2) 1860 (l= 2) 1902 (l= 2) 2003 (l= 2)
2030 (l= 2) 2173 (l= 3) 2205 (l= 2) 2278 (l= 2) 2378 (l= 2)
2495 (l= 2) 2528 (l= 2) 2927 (l= 2)
GP 80 (70)
at 65 (l= 2) 125 (l= 2) 383 (l= 2) 747 (l= 2) 799 (l= 3)
838 (l= 2) 929 (l= 2) 1020 (l= 2) 1111 (l= 2) 1136 (l= 2)
1232 (l= 2) 1381 (l= 3) 1486 (l= 2) 1524 (l= 2) 1590 (l= 2)
1690 (l= 2) 1755 (l= 2) 1884 (l= 2) 1892 (l= 2) 1958 (l= 3)
1983 (l= 2) 2027 (l= 2) 2050 (l= 2) 2074 (l= 2) 2281 (l= 3)
2519 (l= 2) 2747 (l= 2) 2749 (l= 3) 2752 (l= 3) 2757 (l= 3)
2762 (l= 2) 2774 (l= 2) 2776 (l= 3) 2783 (l= 2) 2785 (l= 3)
2789 (l= 2) 2791 (l= 3) 2795 (l= 2) 2802 (l= 2) 2817 (l= 2)
2820 (l= 2) 2826 (l= 2) 2829 (l= 3) 2832 (l= 3) 2836 (l= 2)
2838 (l= 2) 2851 (l= 2) 2854 (l= 2) 2856 (l=
2) 2859 (l= 2)
2862 (l= 2) 2865 (l= 2) 2869 (l= 2) 2874 (l= 2) 2877 (l= 2)
2883 (l= 3) 2941 (l= 3) 2944 (l= 3) 2947 (l= 3) 2950 (l= 2)
2959 (l= 4) 2965 (l= 2) 2968 (l= 2) 2971 (l= 2) 2975 (l= 2)
2977 (l= 2) 2983 (l= 2) 2995 (l= 2) 3000 (l= 3) 3003 (l= 3)
3012 (l= 2) 3014 (l= 2) 3021 (l= 2) 3023 (l= 3) 3026 (l= 2)
3029 (l= 2) 3036 (l= 2) 3038 (l= 3) 3041 (l= 2) 3060 (l= 2)
5. Long amino acid multiplets (>= 5; Letter/Length/Position):
P/5/2304
B. CHARGE ALPHABET.
1. Total number of charge multiplets: 63 (Expected range: 43-- 92)
18 +plets (f+: 10.2%), 45 -plets (f-: 12.0%)
Total number of charge altplets: 59 (Critical number: 99)
2. Histogram of spacings between consecutive charge multiplets:
(1-5) 8 (6-10) 8 (11-20) 9 (>=21) 39
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PERIODICITY ANALYSIS.
A. AMINO ACID ALPHABET (core: 4; !-core: 6)
Location Period Element Copies Core Errors
885- 896 3 A.. 4 4 0
2291-2306 4 T..P 4 4 0
2301-2308 1 P 7 5 1
2536-2555 5 S.... 4 4 0
2618-2649 8 T....... 4 4 0
2747-2800 3 G.. 18 18 ! 0
2803-2898 3 G.. 31 16 ! 1
2941-2952 3 PGP 4 4 /0/0/1/
2942-2992 3 G.. 17 17 ! 0
2992-3009 3 G.. 6 6 ! 0
2996-3031 9 P......G. 4 4 /0/././././././1/./
3012-3044 3 G.. 11 11 ! 0
B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 7)
and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core:10)
Location Period Element Copies Core Errors
1- 64 8 i.....0. 8 8 /0/./././././2/./
284- 310 3 i.0 8 6 /1/./1/
299- 347 7 i....0. 7 7 /0/././././2/./
308- 331 4 i00. 6 6 /0/2/2/./
419- 474 8 i...0... 7 7 /0/./././2/./././
457- 501 5 i0..* 8 6 /1/3/././3/
740- 793 9 *..000... 6 6 /0/././2/2/2/./././
1161-1208 8 i..0*..0 6 6 /0/././1/2/././1/
1361-1396 6 i..00. 6 6 /0/././2/2/./
1402-1449 8 *....0.. 6 6 /0/././././1/././
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SPACING ANALYSIS.
Location (Quartile) Spacing Rank P-value Interpretation
1875-2092 (3.) K( 217)K 1 of 156 0.0013 large maximal spacing
2685-2934 (4.) Y( 249)Y 1 of 113 0.0071 large maximal spacing
2746-2867 (4.) V( 121)V 2 of 271 0.0000 large 2. maximal spacing
2911-3064 (4.) V( 153)V 1 of 271 0.0001 large 1. maximal spacing
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Pfam (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/Pfam
Sequence file: tem36
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
fn3 Fibronectin type III domain 984.5 2.6e-292 18
vwa von Willebrand factor type A domain 865.8 1.4e-256 4
TSPN Thrombospondin N-terminal -like domain 280.1 2.8e-80 1
Collagen Collagen triple helix repeat (20 copie 75.8 9e-19 4
MAP1B_neuraxin Neuraxin and MAP1B proteins 4.8 9.9 1
lectin_legB Legume lectins beta domain 4.8 5.5 1
Apidaecin Apidaecin 3.1 35 1
fibrinogen_C Fibrinogen beta and gamma chains, C-te 1.4 15 1
E1-E2_ATPase E1-E2 ATPase 0.9 30 1
Lipoate_B Lipoate-protein ligase B 0.7 7.8 1
Occludin Occludin/ELL family 0.4 25 1
Alpha_core Alphavirus core protein 0.3 43 1
Transp_cyt_pur Permeases for cytosine/purines, uracil -1.2 85 1
FHIPEP FHIPEP family -1.3 47 1
Flg_hook Flagellar hook-length control protein -1.5 92 1
thaumatin Thaumatin family -2.3 86 1
Peptidase_M29 Thermophilic metalloprotease (M29) -2.4 58 1
cadherin Cadherin domain -8.1 3.3 1
Big_1 Bacterial Ig-like domain (group 1) -31.6 42 1
Barwin Barwin family -42.7 54 1
XRCC1_N XRCC1 N terminal domain -54.6 99 1
Coagulin Coagulin -58.3 60 1
DnaJ_C DnaJ C terminal region -84.1 85 1
DUF88 Protein of unknown function DUF88 -116.0 20 1
BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family -154.5 65 1
TGT Queuine tRNA-ribosyltransferase -172.3 14 1
DUF39 Domain of unknown function DUF39 -189.9 97 1
Lamp Lysosome-associated membrane glycoprot -207.4 44 1
DUF111 Protein of unknown function DUF111 -247.7 95 1
Biotin_synth Biotin synthase -249.1 49 1
LamB LamB porin -258.8 98 1
UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase -284.7 63 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fn3 1/18 25 103 .. 1 84 [] 67.5 2.7e-16
FHIPEP 1/1 96 106 .. 678 688 .] -1.3 47
DUF88 1/1 121 234 .. 1 156 [] -116.0 20
E1-E2_ATPase 1/1 242 265 .. 32 52 .. 0.9 30
vwa 1/4 140 312 .. 1 200 [] 246.0 5.3e-70
BcrAD_BadFG 1/1 166 364 .. 1 276 [] -154.5 65
Biotin_synth 1/1 123 403 .. 1 338 [] -249.1 49
fn3 2/18 334 416 .. 1 84 [] 66.2 6.8e-16
XRCC1_N 1/1 371 499 .. 1 155 [] -54.6 99
TGT 1/1 303 499 .. 1 246 [] -172.3 14
DUF111 1/1 211 510 .. 1 418 [] -247.7 95
Flg_hook 1/1 566 573 .. 403 410 .] -1.5 92
vwa 2/4 440 612 .. 1 200 [] 213.3 3.6e-60
fn3 3/18 632 710 .. 1 84 [] 59.1 9.7e-14
Coagulin 1/1 612 779 .. 1 174 [] -58.3 60
fn3 4/18 723 802 .. 1 84 [] 54.7 2.1e-12
Alpha_core 1/1 869 886 .. 124 141 .] 0.3 43
fn3 5/18 813 895 .. 1 84 [] 67.4 3.1e-16
DnaJ_C 1/1 828 907 .. 1 123 [] -84.1 85
Occludin 1/1 925 934 .. 1 13 [. 0.4 25
Transp_cyt_pur 1/1 917 942 .. 446 472 .] -1.2 85
fn3 6/18 904 987 .. 1 84 [] 42.6 8.9e-09
LamB 1/1 681 1016 .. 1 480 [] -258.8 98
thaumatin 1/1 1025 1032 .. 200 207 .] -2.3 86
fn3 7/18 995 1077 .. 1 84 [] 52.5 9.5e-12
fn3 8/18 1087 1166 .. 1 84 [] 44.4 2.6e-09
UDPG_MGDP_dh 1/1 1041 1370 .. 1 451 [] -284.7 63
vwa 3/4 1199 1371 .. 1 200 [] 225.3 8.6e-64
fn3 9/18 1385 1463 .. 1 84 [] 78.8 1.1e-19
cadherin 1/1 1389 1478 .. 1 107 [] -8.1 3.3
fn3 10/18 1474 1554 .. 1 84 [] 59.9 5.6e-14
Apidaecin 1/1 1548 1575 .. 1 28 [] 3.1 35
Big_1 1/1 1527 1612 .. 1 108 [] -31.6 42
fn3 11/18 1566 1643 .. 1 84 [] 60.4 3.9e-14
fn3 12/18 1654 1732 .. 1 84 [] 62.1 1.2e-14
lectin_legB 1/1 1770 1791 .. 173 196 .. 4.8 5.5
fn3 13/18 1752 1836 .. 1 84 [] 81.0 2.5e-20
Lipoate_B 1/1 1898 1920 .. 1 27 [. 0.7 7.8
fn3 14/18 1844 1926 .. 1 84 [] 54.5 2.3e-12
DUF39 1/1 1640 1933 .. 1 336 [] -189.9 97
fn3 15/18 1934 2016 .. 1 84 [] 56.9 4.3e-13
fn3 16/18 2024 2108 .. 1 84 [] 70.0 5e-17
fn3 17/18 2116 2193 .. 1 84 [] 72.3 1e-17
fn3 18/18 2204 2281 .. 1 84 [] 39.7 6.6e-08
Barwin 1/1 2172 2299 .. 1 128 [] -42.7 54
Lamp 1/1 2170 2456 .. 1 390 [] -207.4 44
vwa 4/4 2323 2496 .. 1 200 [] 202.4 6.8e-57
fibrinogen_C 1/1 2662 2672 .. 1 11 [. 1.4 15
MAP1B_neuraxin 1/1 2666 2672 .. 11 17 .] 4.8 9.9
TSPN 1/1 2520 2712 .. 1 218 [] 280.1 2.8e-80
Collagen 1/4 2747 2806 .. 1 60 [] 28.1 0.00011
Collagen 2/4 2824 2883 .. 1 60 [] 46.8 5e-10
Peptidase_M29 1/1 2920 2928 .. 1 9 [. -2.4 58
Collagen 3/4 2931 2989 .. 1 60 [] 22.7 0.00021
Collagen 4/4 2990 3047 .. 1 60 [] 2.1 0.0024
Alignments of top-scoring domains:
fn3: domain 1 of 18, from 25 to 103: score 67.5, E = 2.7e-16
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
++P++l ++ + +++++ sW p pi gY++t+ p+ +g+++
sp|Q99715| 25 VDPPSDLNFKIIDENTVHMSWAEP--VDPIVGYRITV-DPTTDGPTK 68
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+t++ +tt+ l+ L+P teY+v++++++++ +eS
sp|Q99715| 69 EFTLSASTTETLLSELVPETEYVVTITSYDEV--EES 103
FHIPEP: domain 1 of 1, from 96 to 106: score -1.3, E = 47
*->SyqElpeeikI<-*
Sy E++e +++
sp|Q99715| 96 SYDEVEESVPV 106
DUF88: domain 1 of 1, from 121 to 234: score -116.0, E = 20
*->lesikeyiliKkkkrkgeKrIGLLVDG.PNmLRKEFgidLedIreiL
+e+ + i k +++ + LVDG+ R F L++I +
sp|Q99715| 121 VEKKPGKTEIQKCSVSAWTDLVFLVDGsWSVGRNNFKYILDFIAALV 167
s..eyG..nIrVaKVlLNQYAsdkLIEAVvNQGFePiIVAGDvDVrmAVE
s ++G+++ rV+ V QY sd E NQ
sp|Q99715| 168 SafDIGeeKTRVGVV---QYSSDTRTEFNLNQ------------------ 196
AmELIYNpnIDvIALvTRDADFlPiInkAKEkGKETiVIGAEPGFStALq
+ RD + l++I k kG T
sp|Q99715| 197 --------------YYQRD-ELLAAIKKIPYKGGNTMT-----------G 220
NsADyvIvLeeege<-*
+ Dy + ++
sp|Q99715| 221 DAIDYLVKNTFTES 234
E1-E2_ATPase: domain 1 of 1, from 242 to 265: score 0.9, E = 30
*->pptAtVlRdG...keeeipaeeLv<-*
p+ A ++dG+++ e+eipa eL+
sp|Q99715| 242 PKVAIIITDGksqDEVEIPARELR 265
vwa: domain 1 of 4, from 140 to 312: score 246.0, E = 5.3e-70
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
D+vFL+DGS+S+g+ nF ++dF+ +v+++d+g+ k +rVg
sp|Q99715| 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGE-EK-----TRVG 180
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+vQYS++ rtE f+ln+y +de+l+a++ki+ y gg t+Tg+A++
sp|Q99715| 181 VVQYSSDTRTE--FNLNQYYQRDELLAAIKKIP----YKGGNTMTGDAID 224
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
y+v+n fte++G+R g pkv++++TDG+sqd ++ +++
sp|Q99715| 225 YLVKNTFTESAGAR------VGFPKVAIIITDGKSQDE------VEIPAR 262
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
el+ gvevf++G++ ad ++eL++IAs p+ +hvf+v +f+a+ ++
sp|Q99715| 263 ELRN-VGVEVFSLGIKAAD---AKELKQIASTPSlNHVFNVANFDAIVDI 308
qelL<-*
q+++
sp|Q99715| 309 QNEI 312
BcrAD_BadFG: domain 1 of 1, from 166 to 364: score -154.5, E = 65
*->itlGIDvGStatKcvlleDgNRPPGDkeeviatkverieatdpvksd
++ ++D+G t ++g ++ ++ +++ + +
sp|Q99715| 166 LVSAFDIGEEKT-----RVG----------VVQY--SSDTRTEFNL- 194
aeealnealeeaglkleevdyvvaTGYGRntlglvffa.DkivsEischa
+++ +e+++++ ++y ++ nt +++ a D v + +
sp|Q99715| 195 -NQYYQR--DELLAAIKKIPYKGG-----NT--MTGDAiDYLVKNTFTES 234
lGAsylaPkQkgartViDIGGQDtKVIqiddrGkVvdFqMNDkCAAGtGR
GA+ +P ++ +I+i d Gk d
sp|Q99715| 235 AGARVGFP---KV------------AIIITD-GKSQDE------------ 256
FLEviArrL...gieveElgslaskGatkpakInStCa...VFAEsEvIs
+E+ Ar+L++ g+ev lg a++ a+ I St ++VF v +
sp|Q99715| 257 -VEIPARELrnvGVEVFSLGIKAAD-AKELKQIASTPSlnhVF---NVAN 301
llsrGikaEdIlaGiheSvAeRvaelikrePnLvsiekpvvltGGvAkne
+ + + +I+ ++ v e++ el++ e +e+p n
sp|Q99715| 302 FDAIVDIQNEIISQVCSGVDEQLGELVSGE---EVVEPP--------SNL 340
glvkaLedllgekkgEvkinvpPd.sqyaGAiGAALl<-*
+ + +++++ +n +P +s+++G +
sp|Q99715| 341 IAMEVSSKYVK-------LNWNPSpSPVTG------Y 364
Biotin_synth: domain 1 of 1, from 123 to 403: score -249.1, E = 49
*->erwsrdealelyetPndedlldLlhlAqqirrkffgpkeVql.ctIi
++ + e+++ + + dl +L+++ ++ r +f+ + ++ ++
sp|Q99715| 123 KKPGKTEIQKCSVSA-WTDLVFLVDGSWSVGRNNFK-YILDFiAALV 167
si......Kt..GgCsEDCkYCsQSsryktpveAPiypllkvdevlekAK
s+ + +++Kt+ G + Ss + t+ + + de+l++ K
sp|Q99715| 168 SAfdigeeKTrvGVVQ-------YSSDTRTEFN--LNQYYQRDELLAAIK 208
i........................irakeaGatrrFCivAagRgpYHsp
+ + +++++ +++ + +++ ++ ++++ G i + +
sp|Q99715| 209 KipykggntmtgdaidylvkntfteSAGARVGFP-KVAI------I--IT 249
kdrefeqileaVkeIkneemgLEVCctLGAmLteEQAkqLKe.AGvdrYN
+++ ++++ +e +n +g EV +LG ++ Ak+LK A N
sp|Q99715| 250 DGKSQDEVEIPARELRN--VGVEV-FSLG--IKAADAKELKQiASTPSLN 294
H.....NLeTSrEeyykniiTThTYeDRlnTlknVrkaGievCsGGIiGM
H + N +++ +ii+ ++++ V ++ +
sp|Q99715| 295 HvfnvaNFDAIV-DIQNEIIS--------QVCSGVDEQ-----------L 324
GE..seeDRiglaltLaeLdthPeSVPiNfLvpieGTPladkleneqekl
GE s e++++ L ++ + S + kl
sp|Q99715| 325 GElvSGEEVVEPPSNLIAME--VSS--------------------KYVKL 352
dvleaLktIAtaRiimPkaeiRLagGRetnleelQalcflAGgaNsifVG
++ + + +++i+ +++ + ++ +G
sp|Q99715| 353 NWNPSPSPVTGYKVILTP-----------MTAGSRQHALSVG-------- 383
dKLtTtpVKGVGNPKgreleeDlkmladLGLe<-*
+ tT+ r+l +D + ++
sp|Q99715| 384 PQTTTLS--------VRDLSADTE----YQIS 403
fn3: domain 2 of 18, from 334 to 416: score 66.2, E = 6.8e-16
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.w
+P+nl +++v+s ++ l+W+p+ +p+tgY+v + p g++
sp|Q99715| 334 VEPPSNLIAMEVSSKYVKLNWNPS--PSPVTGYKVIL-TPMTAGSrQ 377
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+ l+v ++tt+ +++L ++teY+++V A +g +++++
sp|Q99715| 378 HALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTsSEPI 416
XRCC1_N: domain 1 of 1, from 371 to 499: score -54.6, E = 99
*->mPEisLRHvvscssqDstHCAEnLLKADt.YRKWRAAkAGEKtisvv
m s H s q t L ADt+Y A G +
sp|Q99715| 371 MTAGSRQHALSVGPQTTTLSVRD-LSADTeYQISVSAMKGMTSSEPI 416
LqLEKEEqiHsvDiGnDGsAFvEvLvgssAGGagatAgEqDYEvLLvtss
+EK + v v s G + D v Lv s
sp|Q99715| 417 SIMEKTQPM-------------KVQVECSRGV----DIKADI-VFLVDGS 448
FmsPsEsRsGsnPnRvRmFGPDKLvRAAAEKRWDRvKivCsqPYsKDsPy
+ s +n +vR F + Lv+ E Rv+i q Ys+D
sp|Q99715| 449 Y-----SIGIANFVKVRAF-LEVLVK-SFEISPNRVQISLVQ-YSRDPHT 490
GLsFvrFHs<-*
+F
sp|Q99715| 491 EFTLKKFTK 499
TGT: domain 1 of 1, from 303 to 499: score -172.3, E = 14
*->ekiiEIQeaLGSDIiMaLDectpypadrdraek......alerTlrW
i++IQ+++ S + De + +++++++ +++++ a+e++ +
sp|Q99715| 303 DAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEppsnliAMEVSSKY 349
AersieahkrrgegedqaLFgIvQGstylDL......RkksAkelaeldF
+ + + ++ g++ L + + Gs L+ ++++ + s+++l +
sp|Q99715| 350 VKLNWNPSPSPVTGYKVILTPMTAGSRQHALsvgpqtTTLSVRDLSADT- 398
fdGYAIGGlVPLsvGEpkddmlrvlehscplLPkdKPRYLMGVGhPedla
+++ + + G + + e + p+ + +
sp|Q99715| 399 EYQISVSA----MKGMTSSEPISIMEKTQPM---------------KVQV 429
lAvelGvDmFDCVaPtRyARnGtllTsreGtiklknakykeDfrPldeeC
++ ++GvD+ + + ++ +G ++++ a++ +
sp|Q99715| 430 EC-SRGVDI----------KADIVFLV-DGSYSIGIANFVK--------- 458
dCyvCknYSRaYLrHLiraeEllGarLateHNLhfyleLmekiRqAIleg
Ra L L ++ E++ r +++ L++ R+ e
sp|Q99715| 459 --------VRAFLEVLVKSFEISPNR--------VQISLVQYSRDPHTE- 491
sllefveeflr<-*
+++++ f +
sp|Q99715| 492 --FTLKK-FTK 499
DUF111: domain 1 of 1, from 211 to 510: score -247.7, E = 95
*->vaifDafaGiSGDMiLgALidlGvkeEeiaEvlkalgsltdevdvev
+ G G+ + g id vk ++ + +g + v + +
sp|Q99715| 211 -----PYKG--GNTMTGDAIDYLVKNTFTESAGARVG--FPKVAIII 248
skVkkaGlrAtkVevkekedHHSHGPlrvGarefkeilevIkssnLeeev
k + Ve+ + e +vG f +Ik ++ e
sp|Q99715| 249 TDGKSQ----DEVEIPAREL------RNVGVEVF---SLGIKAADAKE-- 283
kktAlAvFhllAeAEgkVHGvdleeVHFHEVGAaDAIaDvVGavlalekL
++++A + H +F V + DAI+D+
sp|Q99715| 284 -------LKQIASTPSLNH-------VF-NVANFDAIVDI---------- 308
nlkddelyslPvavGsGfVRaaHGllPVPaPAvlEILkgrqlpvvvsdle
+e s v sG + E+ g vv +++
sp|Q99715| 309 ---QNEIIS---QVCSGVDEQ-----------LGELVSG--EEVVEPPSN 339
gELvTPTGaAIlvtlakklkpfFPPl...eikeVsYGAGskDlelpNiLR
L+ + v l+ p P ++ ++ + AGs+ l
sp|Q99715| 340 --LIAMEVSSKYVKLNWNPSPS--PVtgyKVILTPMTAGSRQHALS---- 381
lvrGeeivPHNHPLSSEAPFGqhdtIvlLETnVDDlSg....EvlGYllE
G + +l +V DlS++++ ++ +++
sp|Q99715| 382 --VGPQTT------------------TL---SVRDLSAdteyQISVSAMK 408
kLLerDgvlDvvliPv.yMKKnRPaillrVIcaeeeaEev.lellfRETG
P+++M K P ++V ++ + +++ ++f G
sp|Q99715| 409 GMTSS--------EPIsIMEKTQP---MKVQVECSRGVDIkADIVFLVDG 447
SLGVRIfpqer.raverrreevvkveikgrikvrlkVgrvkkeivnakPE
S + I ++ ra ++ v+ ei+ r+ +v+ + + E
sp|Q99715| 448 SYSIGIANFVKvRAFLE--VLVKSFEISPN---RVQISLVQYS-RDPHTE 491
FeDiaaIAketGIPlkdvykeivkkisdlkn<-*
F ++ k d+++ i+ +
sp|Q99715| 492 FT-LKKFTK-----VEDIIEAIN------TF 510
Flg_hook: domain 1 of 1, from 566 to 573: score -1.5, E = 92
*->NsaVDIFA<-*
Ns V IFA
sp|Q99715| 566 NSDVEIFA 573
vwa: domain 2 of 4, from 440 to 612: score 213.3, E = 3.6e-60
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL+DGS Sig +nF +v++F+e +v +++++p + v+++
sp|Q99715| 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISP-NR-----VQIS 480
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQYS +++tE f+l+ +++ +++++a++ ++ y gg tnTg+A+
sp|Q99715| 481 LVQYSRDPHTE--FTLKKFTKVEDIIEAINTFP----YRGGSTNTGKAMT 524
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
yv++++f ++ GsR +++pkv++++TDG+s+d +rd++
sp|Q99715| 525 YVREKIFVPSKGSR------SNVPKVMILITDGKSSDA------FRDPAI 562
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
+l+ +ve+fa+Gv++a++ +eL+ IAs+p + hvf v+df+a + +
sp|Q99715| 563 KLRN-SDVEIFAVGVKDAVR---SELEAIASPPAeTHVFTVEDFDAFQRI 608
qelL<-*
+L
sp|Q99715| 609 SFEL 612
fn3: domain 3 of 18, from 632 to 710: score 59.1, E = 9.7e-14
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.w
+P++l++++vts+ + +Wsp+ + + +Y +ty +++ g+++
sp|Q99715| 632 YVPPKDLSFSEVTSYGFKTNWSPA--GENVFSYHITY-KEA-AGDdE 674
neltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
+++ p ++ts++l+ LkP t Y v V+A ++ +S
sp|Q99715| 675 VTVVEPASSTSVVLSSLKPETLYLVNVTAEYED--GFS 710
Coagulin: domain 1 of 1, from 612 to 779: score -58.3, E = 60
*->tnvPiCLCeEPtlLGRkvivstEiKDKiEkAveAvadkdevsGRGFs
iCL E l k+ KD v k + s G
sp|Q99715| 612 LTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGEN 658
iFsgHPvFkE.CGKYECRtvrsEdsRCYnFfPFtHFklECPvsvrdCEPv
+Fs H +kE G E v + s + l + + E
sp|Q99715| 659 VFSYHITYKEaAGDDEVTVVEPASSTSVVLSSLKPETLYLVNVTAEYEDG 708
FGYtvanElRv..ivqAPkAGFRqCvWqHKCRayGsnsCqrtGRCtqqRs
F a+E +++ AP+ v ++ q GR R
sp|Q99715| 709 FSIPLAGEETTeeVKGAPRN---LKVTDETTDSFKITWTQAPGRVLRCRI 755
vvRLvtYdLEKdvFlCEsvRtCCGCPCRsf<-*
+ R v ++v + R R +
sp|Q99715| 756 IYRPVAGGESREVTTPPNQRR------RTL 779
fn3: domain 4 of 18, from 723 to 802: score 54.7, E = 2.1e-12
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+aP+nl+vtd t++s+ ++W+ + g + + ++ yR p+ gge +
sp|Q99715| 723 KGAPRNLKVTDETTDSFKITWTQA--PGRVLRCRIIYR-PVAGGESR 766
eltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
e+t p+++++ tl++L P+t+Yev+V+ + +Gp +
sp|Q99715| 767 EVTTPPNQRRRTLENLIPDTKYEVSVI--PEYFsGPGT 802
Alpha_core: domain 1 of 1, from 869 to 886: score 0.3, E = 43
*->vlGGanEgartALsvvtW<-*
vl G Eg++ ALsv
sp|Q99715| 869 VLQGLKEGTQYALSVTAL 886
fn3: domain 5 of 18, from 813 to 895: score 67.4, E = 3.1e-16
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
++ P++l+v+d t++++ lsWs + g++ Y vty p+ gge+
sp|Q99715| 813 VrGNPRDLRVSDPTTSTMKLSWSGA--PGKVKQYLVTY-TPVAGGET 856
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+e+tv g+tt+ +l+gLk+gt+Y ++V+A+ + G G +
sp|Q99715| 857 QEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGaGDAL 895
DnaJ_C: domain 1 of 1, from 828 to 907: score -84.1, E = 85
*->qrlRlaGeGeaGenGGppGDLYVvirVkeHkiFeRdGdDLycevpis
+++ l+ G +G+ Vk + ++
sp|Q99715| 828 STMKLSWSGAPGK-------------VKQ--------------YLVT 847
ftqAaLGgeveVPTLdGkvkLkIPaGTQsGtvfrLkGKGvpklnrgsgrG
+t a G + eV T+ G+++ ++ +G + Gt+ L v l sg G
sp|Q99715| 848 YTPVAGGETQEV-TVRGDTTNTVLQGLKEGTQYALS---VTAL-YASGAG 892
DLyVhVkVetPkkLseeQkeLLeela<-*
D L e L e
sp|Q99715| 893 D-----------ALFGEGTTLEERGS 907
Occludin: domain 1 of 1, from 925 to 934: score 0.4, E = 25
*->FYkWtSPPGvvRi<-*
WtS PG vR+
sp|Q99715| 925 ---WTSAPGMVRG 934
Transp_cyt_pur: domain 1 of 1, from 917 to 942: score -1.2, E = 85
*->iagsvgepdikvvpgakplydlsyfVG<-*
+++s g+ ++ +pg++ +y++s+
sp|Q99715| 917 TDTSIGA-YWTSAPGMVRGYRVSWKSL 942
fn3: domain 6 of 18, from 904 to 987: score 42.6, E = 8.9e-09
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.
++ P++l+ +d+t+ts+ W+ + g + gY+v++ ++ + +
sp|Q99715| 904 ErGSPQDLVTKDITDTSIGAYWTSA--PGMVRGYRVSW-KSLYDDVd 947
wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+ e+++p ++ + ++++L+P t+Y ++V A G+G++
sp|Q99715| 948 TGEKNLPEDAIHTMIENLQPETKYRISVFATYSSGeGEPL 987
LamB: domain 1 of 1, from 681 to 1016: score -258.8, E = 98
*->FhGYaRSGvGvsgsGseqqsfaatgkqGETGGsiGRLGNEadtYaEl
a S v +s + + + + E++ + +
sp|Q99715| 681 ----ASSTSVVLSSLKPETLYLVNVTA------------EYEDGFSI 711
qLgqevwnengktfyfdvMVAdgvGqngsnDWeasesk.fqCtsanGtaL
L+ e ++e k V d + W+ + + +C
sp|Q99715| 712 PLAGEETTEEVKGAPRNLKVTDETTDSFKITWTQAPGRvLRCRIIYRPVA 761
DGCendedgdfnvrQfnvelVqaKgLlgfapeatlWAGKRfyqrNhDiHm
G + ++ +n r + +L++ + + ++
sp|Q99715| 762 GGESREVTTPPNQRRRT-----LENLIP-------------DTK-YEVSV 792
iDfyywnisGtAGaGIEnvkvGpGKlSlAlvrndedd..gsytnsddsik
i y+ sG+ G + +A++ + + +++++ sd +
sp|Q99715| 793 IPEYF---SGP----------GTPLTGNAATEE-VRGnpRDLRVSDPT-- 826
dYndeinnnvfDlRLagiplwddgsLevsvdYarANeSadekDdsnlnGy
++++ l g p + L v Y + +
sp|Q99715| 827 -------TSTMKLSWSGAPGKVKQYL---VTYTPVA------GGETQE-V 859
gaakDgwmftaeltQgllnGGFNkfvlqygtDagtasnfGhfwGaSagtk
+ +D+ ++ +Qgl G qy+ + +++++ ++G
sp|Q99715| 860 TVRGDTTNT---VLQGLKEG------TQYAL--SVTALYASGAG---DAL 895
yngsgaeakngadgfRil..shGviplGdnWevahalv..YqrG.nDiys
+ g g+ ++ ++ +++++ +++G W a+ +v++Y ++ + +y
sp|Q99715| 896 F-GEGTTLEERGSPQDLVtkDITDTSIGAYWTSAPGMVrgYRVSwKSLY- 943
qfGydtadkdtYtGksfdiewytvvvRPmYkWdqimsTafEgGYfnvknk
dt+ k+ + T+ E ++
sp|Q99715| 944 -DDVDTGEKN--------------------LPEDAIHTMIE------NLQ 966
stggnkredvgqSFYKlTLAqtwkvGs....SfwafSRPEIRvYATYlkw
++ Y + ++ t++ G +++ ++a +T l +
sp|Q99715| 967 PET--------K--YRISVFATYSSGEgeplTGDA---------TTELSQ 997
dekegkgnafdalgrtkdasnSGistdsgndDdewtfGvQmEiWW<-*
d k +k ++ + + m + W
sp|Q99715| 998 DSKTLK--VDE-----------------ETENT-------MRVTW 1016
thaumatin: domain 1 of 1, from 1025 to 1032: score -2.3, E = 86
*->NYrVvFCP<-*
NYrVv P
sp|Q99715| 1025 NYRVVYRP 1032
fn3: domain 7 of 18, from 995 to 1077: score 52.5, E = 9.5e-12
*->PsaP.tnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
+s+ ++ l+v + t+++++++W+p+ g++ +Y+v yR p + g+
sp|Q99715| 995 LSQDsKTLKVDEETENTMRVTWKPA--PGKVVNYRVVYR-PHGRGKQ 1038
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
vp+t ts +l+ L+P t+Y ++V + G+G+
sp|Q99715| 1039 MVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKMGeGKLR 1077
fn3: domain 8 of 18, from 1087 to 1166: score 44.4, E = 2.6e-09
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.w
P+nl+ +d t +s++++W+p+ g++ gY+vt + p+++ +
sp|Q99715| 1087 FKSPRNLKTSDPTMSSFRVTWEPA--PGEVKGYKVTFH-PTGDDRrL 1130
neltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
el v + ++++l+ L++gt+Y+v V +g eS
sp|Q99715| 1131 GELVVGPYDNTVVLEELRAGTTYKVNVFGMFDG--GES 1166
UDPG_MGDP_dh: domain 1 of 1, from 1041 to 1370: score -284.7, E = 63
*->mkIaViGlGYVGGPLvtavclaeiGhdVigvDInesKidklnnGkiP
+k+ P+vt+++l+ ++ + + +DI ++P
sp|Q99715| 1041 AKV---------PPTVTSTVLKRLQPQTT-YDI----------TVLP 1067
IyEPGLeeLvkknvesgrLrfttdykeaikeaDvifIaVgTPskkdGnGk
Iy G+ +L ++ + +++k+ + + k+
sp|Q99715| 1068 IYKMGEGKLRQGSG-----TTASRFKS------------PRNLKTS---- 1096
eksaDLtyvesAaetIgpvlkkGdrdkViVekStvPggTeeevrpileka
++ ++ + + +p kG +kV + P g ++ + ++
sp|Q99715| 1097 --DPTMSS-FRVTWEPAPGEVKG--YKV----TFHPTGDDRRLGELVV-- 1135
sgltFpqqvlkegvdFdVasNPEFLrEGnAvyDllnPdRvviGveetpes
+ ++d V+ E Lr G+ + +++ + +G+ +p +
sp|Q99715| 1136 G-----------PYDNTVVL--EELRAGTTYKVNVFG-MFDGGE-SSPLV 1170
aealreLYkpfiekgWlprgpivvtdlk.....tAEliKya........a
+ + +L + + pi+ ++ + ++ +A + +++++ + ++a
sp|Q99715| 1171 GQEMTTLSDTTV-------MPILSSGMEcltraEADIVLLVdgswsigrA 1213
NaFLAtkIsFiNElanICeavGaDvseVaeaaGl...DpRIglrkflnPG
N F+ ++ sFi + I e + + V a+ + ++DpR ++ + +
sp|Q99715| 1214 N-FRTVR-SFI---SRIVEVFDIGPKRVQIALAQysgDPRTE-WQLN-AH 1256
pGfGGsCfpkDprALfiiaknlgvgehaeLieavrevNdsqpsyvvekli
+D + L++ +nl++ +L +++ +N +++ + + +
sp|Q99715| 1257 ---------RDKKSLLQAVANLPYKGGNTL--TGMALNFIRQQNF--RTQ 1293
kelgkagktlkGkkiavLGLaFKpntDDlRESpaieiiemLleeglaeVk
+ + + +ki+vL i ++++
sp|Q99715| 1294 AGM-----RPRARKIGVL-------------------ITDGKSQD----- 1314
ayDPkvepnrehlaqkveyesdavlaeavkraDavviltewdefkeldks
D ++ + ++++++e a+ ++ + + +i+t+ d+ +++ +
sp|Q99715| 1315 --DVEAPS---KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHDYNVA 1359
kianrmkkpvIiDgRnilDl<-*
++ + +i+D
sp|Q99715| 1360 DFES---------LSRIVDD 1370
vwa: domain 3 of 4, from 1199 to 1371: score 225.3, E = 8.6e-64
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Div+L+DGS+Sig++nF +v+ F++r+ve +d+gp + v+++
sp|Q99715| 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGP-KR-----VQIA 1239
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
l+QYS+++rtE + ln++++k+++lqa+ +++ y gg t Tg AL+
sp|Q99715| 1240 LAQYSGDPRTE--WQLNAHRDKKSLLQAVANLP----YKGGNTLTGMALN 1283
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+ + + f+ +G+R ++a+k+ V++TDG+sqdd ++++++
sp|Q99715| 1284 FIRQQNFRTQAGMR------PRARKIGVLITDGKSQDD------VEAPSK 1321
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
+lk+ +gve faiG++nad + eL+ IA++pd+ h ++v dfe+L+ +
sp|Q99715| 1322 KLKD-EGVELFAIGIKNAD---EVELKMIATDPDdTHDYNVADFESLSRI 1367
qelL<-*
++ L
sp|Q99715| 1368 VDDL 1371
fn3: domain 9 of 18, from 1385 to 1463: score 78.8, E = 1.1e-19
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+ aP+nl+++++t s+++sW+pp + +++Y+v+y +p++gg+ +
sp|Q99715| 1385 LEAPSNLVISERTHRSFRVSWTPP--SDSVDRYKVEY-YPVSGGKRQ 1428
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+ v++ +ts +l++LkP teY+v V++v ++ ++S
sp|Q99715| 1429 EFYVSRMETSTVLKDLKPETEYVVNVYSVVED--EYS 1463
cadherin: domain 1 of 1, from 1389 to 1478: score -8.1, E = 3.3
*->ysasvpEnapvGtevltvtAtDaDdplgpNgrirYsilggnpggwFr
+ ++E + +v t + d + + ++ Y ++g+ ++ F
sp|Q99715| 1389 SNLVISER---THRSFRVSWTPPSD-SVDRYKVEYYPVSGGKRQEFY 1431
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadplsaaggsppls
+ + + ++ k L E+ ++++ ++ D+ + +p +
sp|Q99715| 1432 VSRMETS-----TVLKDLKPETE--YVVNVYSVVEDE------YSEPLKG 1468
gtatvtitVl<-*
++ t+ + V
sp|Q99715| 1469 TEKTLPVPVV 1478
fn3: domain 10 of 18, from 1474 to 1554: score 59.9, E = 5.6e-14
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge..
P ++ l + dv++t+++++W+p g tgY ++y +p+ + e++
sp|Q99715| 1474 PVPVVSLNIYDVGPTTMHVQWQPV---GGATGYILSY-KPVKDTEpt 1516
.wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
+++e+++ +t + ++lt+L+P+teY v+VqAv + S
sp|Q99715| 1517 rPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHD--LTS 1554
Apidaecin: domain 1 of 1, from 1548 to 1575: score 3.1, E = 35
*->lrakPEAEPGnnRPvYiPqPRPPHPRlr<-*
+ EP R v +P PRP +lr
sp|Q99715| 1548 VLHDLTSEPVTVREVTLPLPRPQDLKLR 1575
Big_1: domain 1 of 1, from 1527 to 1612: score -31.6, E = 42
*->vivdqltAsitsivaddttavAngndaiTlTAtVkDanGnPvagqeV
v+ ql t v +n a+T++A + D Pv eV
sp|Q99715| 1527 VNDMQL----TDLV-------PNTEYAVTVQAVLHDLTSEPVTVREV 1562
tFtvpsdvsssgtLsnkntakatTDanGvAtvtLTst..kaGtytVtAsl
t p ++ +L ++ T++ v + ++k+++y+V ++
sp|Q99715| 1563 TL--PLPRPQDLKLRDV------THS--TMNVFWEPVpgKVRKYIVRYKT 1602
enggatsvdaktV<-*
+ + v++++V
sp|Q99715| 1603 P-EED--VKEVEV 1612
fn3: domain 11 of 18, from 1566 to 1643: score 60.4, E = 3.9e-14
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
++ P++l+ +dvt +++ + W+p g++ +Y v+y ++ +++ +
sp|Q99715| 1566 LPRPQDLKLRDVTHSTMNVFWEPV--PGKVRKYIVRY-KTP-EEDVK 1608
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+ v++++ts l++L t Y+v+V Av ++ eS
sp|Q99715| 1609 EVEVDRSETSTSLKDLFSQTLYTVSVSAVHDE--GES 1643
fn3: domain 12 of 18, from 1654 to 1732: score 62.1, E = 1.2e-14
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
P +aPtnl++t+vts ++ +W++ ++++ Y++t+ p ++ ++
sp|Q99715| 1654 PvPAPTNLKITEVTSEGFRGTWDHG--ASDVSLYRITW-GPFGSSDK 1697
neltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e ++ g++++ ++++L+P+t Yev+++A+ ++ eS
sp|Q99715| 1698 METILNGDENTLVFENLNPNTIYEVSITAIYAD---ES 1732
lectin_legB: domain 1 of 1, from 1770 to 1791: score 4.8, E = 5.5
*->TvsWdlvngkGevAtVlItYdast<-*
Tv+Wd ++ G+v + +ItY+ st
sp|Q99715| 1770 TVKWDPAS--GRVQKYRITYQPST 1791
fn3: domain 13 of 18, from 1752 to 1836: score 81.0, E = 2.5e-20
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.
P+s P+nl+v + ts+slt+ W+p+ +g +++Y++ty qp+ g+++
sp|Q99715| 1752 PkSGPRNLQVYNATSNSLTVKWDPA--SGRVQKYRITY-QPSTGEGn 1795
wneltvpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
+++ t+ g ++s++l+ LkP+t+Y+++V ++ +G++G+ +
sp|Q99715| 1796 EQTTTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGegGRMT 1836
Lipoate_B: domain 1 of 1, from 1898 to 1920: score 0.7, E = 7.8
*->dkvnkirarqpkdtillleHpPVYTlG<-*
+ i +dt++++ + PVYT G
sp|Q99715| 1898 A----ILRNLQPDTSYTVTVVPVYTEG 1920
fn3: domain 14 of 18, from 1844 to 1926: score 54.5, E = 2.3e-12
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+ ++nl+v d ++++l ++W+++ g Y++ y p+ g++
sp|Q99715| 1844 LNTVRNLRVYDPSTSTLNVRWDHA--EGNPRQYKLFY-APA-AGGPE 1886
elt.vpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
el ++pg+t+ ++l++L+P+t Y+v+V+ v ++G++G+ S
sp|Q99715| 1887 ELVpIPGNTNYAILRNLQPDTSYTVTVVPVYTEGdgGRTS 1926
DUF39: domain 1 of 1, from 1640 to 1933: score -189.9, E = 97
*->eGeavVvTAdEmkkiVrelGeekaAdeVDVVTT....gTfGaMsSsg
eGe vTA E ++ V ++ e VT+++ +gT S
sp|Q99715| 1640 EGESPPVTAQETTRPVPA-PTNLKITE---VTSegfrGTWDHGASDV 1682
AvinlghsdPpsfiKmervyLNgieAYaGiCPNEfLgaVDay......iG
+ +s Kme + LNg e E+L y+ + + i+
sp|Q99715| 1683 SLYRITWGPFGSSDKMETI-LNGDENTLV---FENLNPNTIYevsitaIY 1728
aTqpsedpdvgdnPneGdGvleyGGghvieDLvkGkeVElrAtsyGTDCY
a se++d + G+e l
sp|Q99715| 1729 A-DESESDD-----------------------LIGSERTLPILT------ 1748
prkeveteItlDdinqAvmvnpRnaYqnYtAavNsseel.......lyTy
qA +pRn+ q Y+A Ns + ++ ++++ y
sp|Q99715| 1749 --------------TQAPKSGPRNL-QVYNATSNSLTVKwdpasgrVQKY 1783
mgtLlpPenyGnvsfSGcG......elnPLeNDviPetksfetigiGTri
t +p Gn G+++++ l L+ D P ti +
sp|Q99715| 1784 RITYQPSTGEGNEQTTTIGgrqnsvVLQKLKPD-TP-----YTITV-SSL 1826
fLnGAegyilGEGTqhsplqkRlp.hvPippkgtLMlkGDlKdMdpeYir
G g G G + pl ++ v p tL + D + +p+ +
sp|Q99715| 1827 YPDGEGGRMTGRG-KTKPLNTVRNlRVYDPSTSTLNVRWDHAEGNPRQYK 1875
GAflpryG..peLyvgigvPIP.Vlnekvaeala..vlDeDIelpvvDfg
+ p++G++ eL vPIP+ +n ++ +l ++ + ++pv+ g
sp|Q99715| 1876 LFYAPAAGgpEEL-----VPIPgNTNYAILRNLQpdTSYTVTVVPVYTEG 1920
vprRdRPvikevtYeelw<-*
+ +R + t l
sp|Q99715| 1921 DGGR-----TSDTGRTLM 1933
fn3: domain 15 of 18, from 1934 to 2016: score 56.9, E = 4.3e-13
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.w
+ +n++v + t++ l ++W+p+ gp+ Y+v y +p++g +
sp|Q99715| 1934 RGLARNVQVYNPTPNRLGVRWDPA--PGPVLQYRVVY-SPVDGTRpS 1977
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
++ vpg+t+ ++l+ L P+t Y+v ++A+ +G+G +S
sp|Q99715| 1978 ESIVVPGNTRMVHLERLIPDTLYSVNLVALYSDGeGNPS 2016
fn3: domain 16 of 18, from 2024 to 2108: score 70.0, E = 5e-17
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
P+s P+nl+v + t++sl++ W+++ +gp++ Y++ y +p+ g +
sp|Q99715| 2024 PrSGPRNLRVFGETTNSLSVAWDHA--DGPVQQYRIIY-SPTVGDPI 2067
nelt.vpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
e+t+vpg ++++l+ L+P+t+Y+++V+Av ++G++G+ +
sp|Q99715| 2068 DEYTtVPGRRNNVILQPLQPDTPYKITVIAVYEDGdgGHLT 2108
fn3: domain 17 of 18, from 2116 to 2193: score 72.3, E = 1e-17
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+ +P+n++++d t +++sW+p+ +p+ gY++ y +p++++e+
sp|Q99715| 2116 LLPPQNIHISDEWYTRFRVSWDPS--PSPVLGYKIVY-KPVGSNEPM 2159
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e v t sytl++L+P t+Y v V+A+ + S
sp|Q99715| 2160 EAFVGEMT-SYTLHNLNPSTTYDVNVYAQYDS--GLS 2193
fn3: domain 18 of 18, from 2204 to 2281: score 39.7, E = 6.6e-08
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+t+l+ ++++++ + Wsp + t+Y++++ +p++g +
sp|Q99715| 2204 YLNVTDLKTYQIGWDTFCVKWSPH---RAATSYRLKL-SPADGTRGQ 2246
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+tv g++ts+ +tgL P+t+Y v+V ++ + e
sp|Q99715| 2247 EITVRGSETSHCFTGLSPDTDYGVTVFVQTPN--LEG 2281
Barwin: domain 1 of 1, from 2172 to 2299: score -42.7, E = 54
*->sasnVraTYHlYnPqqnnwdlnaaSayCatrfWdadkplswrsKY..
n TY + +q l+ + + t + ++ Y+
sp|Q99715| 2172 HNLNPSTTYDVNVYAQYDSGLSVPLTDQGT---TLYLNVTDLKTYqi 2215
GWtAFCgpagprgqssCGkC.lrvtNtatgasvtvRiVDqggCsnGkdqt
GW FC p+ ++ + +l+ g ++tvR s t
sp|Q99715| 2216 GWDTFCVKWSPHRAATSYRLkLSPADGTRGQEITVRGSET---SHC--FT 2260
GL..DlDy.vnvFnqlDt.dGaGyq.qGhLnVnyqfVdC<-*
GL++D Dy+v+vF q +G G + h +V +
sp|Q99715| 2261 GLspDTDYgVTVFVQTPNlEGPGVSvKEHTTVKPTEAPT 2299
Lamp: domain 1 of 1, from 2170 to 2456: score -207.4, E = 44
*->AnlsvnFsvkYeTtlnkqn.ktfdlpskatVthngSsCGsdnvsdPk
n s++Y+ + +q++++ + p +++ + + nv+ +
sp|Q99715| 2170 TLHNLNPSTTYDVNVYAQYdSGLSVPLTDQG----TTL-YLNVT-DL 2210
laiqFG.sGhswtlnFTKnatrYsvesitfsYNlsDtthFPnAtskgivT
+ q G +++ +++at Y+ + ls + + t++ T
sp|Q99715| 2211 KTYQIGwDTFCVKWSPHRAATSYRLK-------LSPA----DGTRGQEIT 2249
VdsksdikadlnkpfrCtssttvemknVtqtlwdatvq.AfvqNgtfSkn
V ++++ C ++ + ++ + vq++ + + +S +
sp|Q99715| 2250 VR--------GSETSHCFTGLSPDTDYGV----TVFVQtPNLEGPGVSVK 2287
etrCeeDkpspTvaPtihttvptastTitPsPsPtPvpkenPtvGnYsvt
e +++++ pT P++++ P+P+ +P+ +
sp|Q99715| 2288 EHTTVKPTEAPTE-PPTPP----------PPPTIPPARD--------VCK 2318
ngNgTCLLAsmgLQLNItyekkdnktvtrilNinPntTkasGsCestsat
++ + + ++ + I + nk v +i+N T + G e+ a
sp|Q99715| 2319 GAKADIVFLTDA-SWSIGDDN-FNKVVKFIFN-----T-VGGFDEISPAG 2360
LkLnfsqityLdFgFavnassspvvkFyLqeVnvnmtlpdAngstFsa.s
+++f q++ v+ s e +n+++ ++ ++ a +
sp|Q99715| 2361 IQVSFVQYSD-----EVK---S--------EFKLNTYND--KALALGAlQ 2392
NnsLselqApLGnSYkCnkEesisVskafqlnvFnLrVQAFkVtdkgkFG
N + G kE ++ + nv ++ V Vt g+
sp|Q99715| 2393 NIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLV---VVT-DGR-- 2436
saeeCsaDedNfLiPIaVGaALaGLllLVLIAYlIGRKRshaGYQti<-*
s+De a L++ ++G +
sp|Q99715| 2437 -----SQDE----------VKKAALVI------------QQSGFSVF 2456
vwa: domain 4 of 4, from 2323 to 2496: score 202.4, E = 6.8e-57
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL D S+Sig +nF++v F+ + v+ +d++ + ++V+
sp|Q99715| 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAG-----IQVS 2364
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
vQYSd+v+ E fkln+y +k+ l alq+ir y gg t Tg+AL
sp|Q99715| 2365 FVQYSDEVKSE--FKLNTYNDKALALGALQNIR----YRGGNTRTGKALT 2408
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+ +++ t +sG+R +++pkvlVv+TDGrsqd +++++
sp|Q99715| 2409 FIKEKVLTWESGMR------KNVPKVLVVVTDGRSQDE------VKKAAL 2446
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
++++ g+ vf++Gv ++d + eL IAskp+++hvf+v+dfe+ +++
sp|Q99715| 2447 VIQQ-SGFSVFVVGVADVD---YNELANIASKPSeRHVFIVDDFESFEKI 2492
qelL<-*
++ L
sp|Q99715| 2493 EDNL 2496
fibrinogen_C: domain 1 of 1, from 2662 to 2672: score 1.4, E = 15
*->tgKDCqdilqk<-*
+++DC++i+ k
sp|Q99715| 2662 IYIDCYEIIEK 2672
MAP1B_neuraxin: domain 1 of 1, from 2666 to 2672: score 4.8, E = 9.9
*->sYEttEK<-*
+YE++EK
sp|Q99715| 2666 CYEIIEK 2672
TSPN: domain 1 of 1, from 2520 to 2712: score 280.1, E = 2.8e-80
*->gqdllqvfdLpessfsvrkavglkatirvrGsdpsspAYrlgktdri
g+++l++++L+e++f+ ++v+l++ Gs+ps++AYr++k
sp|Q99715| 2520 GFKMLEAYNLTEKNFASVQGVSLES-----GSFPSYSAYRIQK---- 2557
pavvsqptrrlfPAsglpedFsllttfrqapeTpksrgvLfaiydaqqnv
+a+v+qpt++l+P +glp+ ++++++fr++peTp +++++++i+d+ +++
sp|Q99715| 2558 NAFVNQPTADLHP-NGLPPSYTIILLFRLLPETPSDPFAIWQITDR-DYK 2605
rqlglevneVrDGrantlllryqkgsdGkvhtvvFrg.EllpLaDgqWHk
+q+g++ + + ++tl++++ k+++G+v+tv+F+++E+ +L++g++Hk
sp|Q99715| 2606 PQVGVIAD----PSSKTLSFFN-KDTRGEVQTVTFDTeEVKTLFYGSFHK 2650
laLsVsgssRGapavtLYVDCnkidsrpdldrpfqglppidtdGievlga
++++V+++s v++Y+DC++i +++ +++++ +i+tdG+e+lg+
sp|Q99715| 2651 VHIVVTSKS-----VKIYIDCYEIIEKD-IKEAG----NITTDGYEILGK 2690
qaandekkfqgdLQqlkivcdp<-*
+ ++++k++ +++Q+++ivc+p
sp|Q99715| 2691 LLKGERKSAAFQIQSFDIVCSP 2712
Collagen: domain 1 of 4, from 2747 to 2806: score 28.1, E = 0.00011
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
GppGppGp+G pG++Gp+G+ G +Ga GppGp+G+ GpPGp+GppGp
sp|Q99715| 2747 GPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGP 2793
pGppGapGapGpp<-*
+Gp G + + +
sp|Q99715| 2794 QGPNGLSIPGEQG 2806
Collagen: domain 2 of 4, from 2824 to 2883: score 46.8, E = 5e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G pG+pGppGp GppG++G++G + a Gp+GppG pG+PG+pG+ Gp
sp|Q99715| 2824 GTPGLPGPPGPMGPPGDRGFTGKDSAMGPRGPPGRPGSPGSPGVTGP 2870
pGppGapGapGpp<-*
G pG+pG+ G p
sp|Q99715| 2871 SGKPGKPGDHGRP 2883
Peptidase_M29: domain 1 of 1, from 2920 to 2928: score -2.4, E = 58
*->MdaFkkeLe<-*
M++F + L+
sp|Q99715| 2920 MNRFNQMLN 2928
Collagen: domain 3 of 4, from 2931 to 2989: score 22.7, E = 0.00021
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
p + ++ pGppGppGppG aGa+G+pGp G pG+PG pG Gp
sp|Q99715| 2931 -PNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGP 2976
pGppGapGapGpp<-*
pG++G pG++G++
sp|Q99715| 2977 PGERGLPGEKGER 2989
Collagen: domain 4 of 4, from 2990 to 3047: score 2.1, E = 0.0024
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ Gp+G+pGppGp G+ G+pG+ G +G+pGpPG pG G
sp|Q99715| 2990 -GTGSSGPRGLPGPPGPQGES-RTGPPGSTGSRGPPGPPGRPGNSGI 3034
pGppGapGapGpp<-*
+GppG+pG
sp|Q99715| 3035 QGPPGPPGYCDSS 3047
//
Start with PfamFrag (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/PfamFrag
Sequence file: tem36
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
fn3 Fibronectin type III domain 957.1 4.4e-284 18
vwa von Willebrand factor type A domain 858.4 2.3e-254 4
TSPN Thrombospondin N-terminal -like domai 278.3 4.3e-80 1
Collagen Collagen triple helix repeat (20 copi 125.5 9.7e-34 6
WH2 Wiskott Aldrich syndrome homology reg 7.7 2.5 1
MAP1B_neuraxin Neuraxin and MAP1B proteins 4.8 9.9 1
lectin_legB Legume lectins beta domain 4.8 5.5 1
Ribosomal_L25p Ribosomal L25p family 4.5 3.1 1
MGS MGS-like domain 4.0 13 1
DUF31 Domain of unknown function DUF31 3.9 7.6 1
Defensin_propep Defensin propeptide 2.5 34 1
Apidaecin Apidaecin 2.0 32 1
Adenylate_cycla Adenylate cyclase, class-I 1.6 7.8 1
Ran_BP1 RanBP1 domain. 1.6 35 1
ThiJ ThiJ/PfpI family 1.5 47 1
fibrinogen_C Fibrinogen beta and gamma chains, C-t 1.4 15 1
Pribosyltran Phosphoribosyl transferase domain 1.3 32 1
Ribosomal_L37ae Ribosomal L37ae protein family 1.0 81 1
E1-E2_ATPase E1-E2 ATPase 0.9 30 1
Filamin Filamin/ABP280 repeat. 0.8 65 1
Lipoate_B Lipoate-protein ligase B 0.7 7.8 1
Occludin Occludin/ELL family 0.4 25 1
Bac_chlorC Bacteriochlorophyll C binding protein 0.3 91 1
Alpha_core Alphavirus core protein 0.3 43 1
DUF73 Protein of unknown function DUF73 -0.1 41 1
Fz Fz domain -0.1 50 1
RPH3A_effector Rabphilin-3A effector domain -0.3 34 1
Myelin_MBP Myelin basic protein -0.5 99 1
Morbilli_P Morbillivirus RNA polymerase alpha su -1.2 88 1
Transp_cyt_pur Permeases for cytosine/purines, uraci -1.2 85 1
FHIPEP FHIPEP family -1.3 47 1
Flg_hook Flagellar hook-length control protein -1.5 92 1
AOX Alternative oxidase -2.0 97 1
thaumatin Thaumatin family -2.3 86 1
Peptidase_M29 Thermophilic metalloprotease (M29) -2.4 58 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fn3 1/18 25 103 .. 1 84 [] 65.7 1.7e-17
FHIPEP 1/1 96 106 .. 678 688 .] -1.3 47
WH2 1/1 199 211 .. 1 16 [. 7.7 2.5
DUF73 1/1 206 214 .. 321 329 .] -0.1 41
Adenylate_cycla 1/1 192 219 .. 828 855 .] 1.6 7.8
E1-E2_ATPase 1/1 242 265 .. 32 52 .. 0.9 30
ThiJ 1/1 243 271 .. 1 29 [. 1.5 47
vwa 1/4 140 312 .. 1 200 [] 244.1 1.2e-70
fn3 2/18 334 416 .. 1 84 [] 64.3 4.2e-17
Filamin 1/1 422 451 .. 43 73 .. 0.8 65
DUF31 1/1 490 511 .. 107 129 .] 3.9 7.6
Flg_hook 1/1 566 573 .. 403 410 .] -1.5 92
vwa 2/4 440 612 .. 1 200 [] 211.5 4.7e-61
Bac_chlorC 1/1 639 650 .. 59 70 .. 0.3 91
fn3 3/18 632 710 .. 1 84 [] 57.2 4.8e-15
Defensin_propep 1/1 709 719 .. 43 53 .] 2.5 34
Ribosomal_L25p 1/1 713 730 .. 1 18 [. 4.5 3.1
fn3 4/18 723 793 .. 1 74 [. 55.4 1.6e-14
Alpha_core 1/1 869 886 .. 124 141 .] 0.3 43
fn3 5/18 813 895 .. 1 84 [] 65.4 2e-17
Occludin 1/1 925 934 .. 1 13 [. 0.4 25
Transp_cyt_pur 1/1 917 942 .. 446 472 .] -1.2 85
fn3 6/18 904 987 .. 1 84 [] 40.7 2.8e-10
thaumatin 1/1 1025 1032 .. 200 207 .] -2.3 86
fn3 7/18 995 1077 .. 1 84 [] 50.5 4e-13
Myelin_MBP 1/1 1068 1086 .. 151 171 .] -0.5 99
Morbilli_P 1/1 1075 1095 .. 284 303 .] -1.2 88
fn3 8/18 1090 1166 .. 4 84 .] 43.6 4e-11
Ribosomal_L37ae 1/1 1217 1231 .. 77 91 .] 1.0 81
MGS 1/1 1305 1332 .. 1 31 [. 4.0 13
Pribosyltran 1/1 1298 1334 .. 131 160 .] 1.3 32
AOX 1/1 1301 1352 .. 1 57 [. -2.0 97
vwa 3/4 1199 1371 .. 1 200 [] 223.5 1.4e-64
fn3 9/18 1385 1463 .. 1 84 [] 76.9 9.5e-21
fn3 10/18 1474 1554 .. 1 84 [] 58.0 2.8e-15
Apidaecin 1/1 1555 1575 .. 8 28 .] 2.0 32
Ran_BP1 1/1 1591 1605 .. 99 113 .. 1.6 35
fn3 11/18 1566 1643 .. 1 84 [] 58.5 2e-15
fn3 12/18 1654 1732 .. 1 84 [] 60.2 6.3e-16
lectin_legB 1/1 1770 1791 .. 173 196 .. 4.8 5.5
fn3 13/18 1752 1836 .. 1 84 [] 79.0 2.4e-21
Lipoate_B 1/1 1898 1920 .. 1 27 [. 0.7 7.8
fn3 14/18 1844 1926 .. 1 84 [] 52.6 1e-13
fn3 15/18 1938 2016 .. 5 84 .] 59.3 1.2e-15
RPH3A_effector 1/1 2011 2030 .. 289 309 .] -0.3 34
fn3 16/18 2024 2108 .. 1 84 [] 68.1 3.4e-18
fn3 17/18 2116 2193 .. 1 84 [] 70.4 7.3e-19
fn3 18/18 2204 2281 .. 1 84 [] 37.8 1.9e-09
Fz 1/1 2302 2323 .. 85 108 .. -0.1 50
vwa 4/4 2323 2496 .. 1 200 [] 200.6 7.4e-58
fibrinogen_C 1/1 2662 2672 .. 1 11 [. 1.4 15
MAP1B_neuraxin 1/1 2666 2672 .. 11 17 .] 4.8 9.9
TSPN 1/1 2520 2712 .. 1 218 [] 278.3 4.3e-80
Collagen 1/6 2747 2798 .. 1 52 [. 39.0 3e-09
Collagen 2/6 2802 2853 .. 9 60 .] 36.6 1.5e-08
Collagen 3/6 2854 2896 .. 1 43 [. 27.2 5.5e-06
Peptidase_M29 1/1 2920 2928 .. 1 9 [. -2.4 58
Collagen 4/6 2941 2989 .. 12 60 .] 34.1 7.1e-08
Collagen 5/6 2995 3008 .. 1 14 [. 7.6 1.3
Collagen 6/6 3012 3042 .. 1 31 [. 21.3 0.00022
Alignments of top-scoring domains:
fn3: domain 1 of 18, from 25 to 103: score 65.7, E = 1.7e-17
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
++P++l ++ + +++++ sW p pi gY++t+ p+ +g+++
sp|Q99715| 25 VDPPSDLNFKIIDENTVHMSWAEP--VDPIVGYRITV-DPTTDGPTK 68
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+t++ +tt+ l+ L+P teY+v++++++++ +eS
sp|Q99715| 69 EFTLSASTTETLLSELVPETEYVVTITSYDEV--EES 103
FHIPEP: domain 1 of 1, from 96 to 106: score -1.3, E = 47
*->SyqElpeeikI<-*
Sy E++e +++
sp|Q99715| 96 SYDEVEESVPV 106
WH2: domain 1 of 1, from 199 to 211: score 7.7, E = 2.5
*->aRsaLLaaIrsagqGi<-*
+R++LLaaI+ +++
sp|Q99715| 199 QRDELLAAIK---KIP 211
DUF73: domain 1 of 1, from 206 to 214: score -0.1, E = 41
*->lIkkikEKl<-*
+Ikki++K+
sp|Q99715| 206 AIKKIPYKG 214
Adenylate_cycla: domain 1 of 1, from 192 to 219: score 1.6, E = 7.8
*->FNlPQFYQivkvdggvqvvPFrsrsagk<-*
FNl Q+YQ +++ +P++++ +
sp|Q99715| 192 FNLNQYYQRDELLAAIKKIPYKGGNTMT 219
E1-E2_ATPase: domain 1 of 1, from 242 to 265: score 0.9, E = 30
*->pptAtVlRdG...keeeipaeeLv<-*
p+ A ++dG+++ e+eipa eL+
sp|Q99715| 242 PKVAIIITDGksqDEVEIPARELR 265
ThiJ: domain 1 of 1, from 243 to 271: score 1.5, E = 47
*->kvlilaangfEDiEliiPidvlrrgGleV<-*
kv+i++++g E+ iP+ lr+ G+eV
sp|Q99715| 243 KVAIIITDGKSQDEVEIPARELRNVGVEV 271
vwa: domain 1 of 4, from 140 to 312: score 244.1, E = 1.2e-70
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
D+vFL+DGS+S+g+ nF ++dF+ +v+++d+g+ k +rVg
sp|Q99715| 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGE-EK-----TRVG 180
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+vQYS++ rtE f+ln+y +de+l+a++ki+ y gg t+Tg+A++
sp|Q99715| 181 VVQYSSDTRTE--FNLNQYYQRDELLAAIKKIP----YKGGNTMTGDAID 224
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
y+v+n fte++G+R g pkv++++TDG+sqd ++ +++
sp|Q99715| 225 YLVKNTFTESAGAR------VGFPKVAIIITDGKSQDE------VEIPAR 262
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
el+ gvevf++G++ ad ++eL++IAs p+ +hvf+v +f+a+ ++
sp|Q99715| 263 ELRN-VGVEVFSLGIKAAD---AKELKQIASTPSlNHVFNVANFDAIVDI 308
qelL<-*
q+++
sp|Q99715| 309 QNEI 312
fn3: domain 2 of 18, from 334 to 416: score 64.3, E = 4.2e-17
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.w
+P+nl +++v+s ++ l+W+p+ +p+tgY+v + p g++
sp|Q99715| 334 VEPPSNLIAMEVSSKYVKLNWNPS--PSPVTGYKVIL-TPMTAGSrQ 377
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+ l+v ++tt+ +++L ++teY+++V A +g +++++
sp|Q99715| 378 HALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTsSEPI 416
Filamin: domain 1 of 1, from 422 to 451: score 0.8, E = 65
*->gGgltvtVegPsGaAvvevkvtDngDGTytV<-*
+++++v+Ve+ G+ + +++++ + DG+y++
sp|Q99715| 422 TQPMKVQVECSRGV-DIKADIVFLVDGSYSI 451
DUF31: domain 1 of 1, from 490 to 511: score 3.9, E = 7.6
*->tsFsLGKYtdpsdfvslinletp<-*
t+F+L+K+t+++d+ in p
sp|Q99715| 490 TEFTLKKFTKVEDIIEAINT-FP 511
Flg_hook: domain 1 of 1, from 566 to 573: score -1.5, E = 92
*->NsaVDIFA<-*
Ns V IFA
sp|Q99715| 566 NSDVEIFA 573
vwa: domain 2 of 4, from 440 to 612: score 211.5, E = 4.7e-61
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL+DGS Sig +nF +v++F+e +v +++++p + v+++
sp|Q99715| 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISP-NR-----VQIS 480
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQYS +++tE f+l+ +++ +++++a++ ++ y gg tnTg+A+
sp|Q99715| 481 LVQYSRDPHTE--FTLKKFTKVEDIIEAINTFP----YRGGSTNTGKAMT 524
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
yv++++f ++ GsR +++pkv++++TDG+s+d +rd++
sp|Q99715| 525 YVREKIFVPSKGSR------SNVPKVMILITDGKSSDA------FRDPAI 562
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
+l+ +ve+fa+Gv++a++ +eL+ IAs+p + hvf v+df+a + +
sp|Q99715| 563 KLRN-SDVEIFAVGVKDAVR---SELEAIASPPAeTHVFTVEDFDAFQRI 608
qelL<-*
+L
sp|Q99715| 609 SFEL 612
Bac_chlorC: domain 1 of 1, from 639 to 650: score 0.3, E = 91
*->afsevssyavrt<-*
+fsev sy+++t
sp|Q99715| 639 SFSEVTSYGFKT 650
fn3: domain 3 of 18, from 632 to 710: score 57.2, E = 4.8e-15
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.w
+P++l++++vts+ + +Wsp+ + + +Y +ty +++ g+++
sp|Q99715| 632 YVPPKDLSFSEVTSYGFKTNWSPA--GENVFSYHITY-KEA-AGDdE 674
neltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
+++ p ++ts++l+ LkP t Y v V+A ++ +S
sp|Q99715| 675 VTVVEPASSTSVVLSSLKPETLYLVNVTAEYED--GFS 710
Defensin_propep: domain 1 of 1, from 709 to 719: score 2.5, E = 34
*->vaiSfagdess<-*
++i++ag+e++
sp|Q99715| 709 FSIPLAGEETT 719
Ribosomal_L25p: domain 1 of 1, from 713 to 730: score 4.5, E = 3.1
*->LnaevRteqgKgasRrLR<-*
L +e+ te Kga+R+L+
sp|Q99715| 713 LAGEETTEEVKGAPRNLK 730
fn3: domain 4 of 18, from 723 to 793: score 55.4, E = 1.6e-14
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+aP+nl+vtd t++s+ ++W+ + g + + ++ yR p+ gge +
sp|Q99715| 723 KGAPRNLKVTDETTDSFKITWTQA--PGRVLRCRIIYR-PVAGGESR 766
eltvpgtttsytltgLkPgteYevrVq<-*
e+t p+++++ tl++L P+t+Yev+V+
sp|Q99715| 767 EVTTPPNQRRRTLENLIPDTKYEVSVI 793
Alpha_core: domain 1 of 1, from 869 to 886: score 0.3, E = 43
*->vlGGanEgartALsvvtW<-*
vl G Eg++ ALsv
sp|Q99715| 869 VLQGLKEGTQYALSVTAL 886
fn3: domain 5 of 18, from 813 to 895: score 65.4, E = 2e-17
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
++ P++l+v+d t++++ lsWs + g++ Y vty p+ gge+
sp|Q99715| 813 VrGNPRDLRVSDPTTSTMKLSWSGA--PGKVKQYLVTY-TPVAGGET 856
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+e+tv g+tt+ +l+gLk+gt+Y ++V+A+ + G G +
sp|Q99715| 857 QEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGaGDAL 895
Occludin: domain 1 of 1, from 925 to 934: score 0.4, E = 25
*->FYkWtSPPGvvRi<-*
WtS PG vR+
sp|Q99715| 925 ---WTSAPGMVRG 934
Transp_cyt_pur: domain 1 of 1, from 917 to 942: score -1.2, E = 85
*->iagsvgepdikvvpgakplydlsyfVG<-*
+++s g+ ++ +pg++ +y++s+
sp|Q99715| 917 TDTSIGA-YWTSAPGMVRGYRVSWKSL 942
fn3: domain 6 of 18, from 904 to 987: score 40.7, E = 2.8e-10
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.
++ P++l+ +d+t+ts+ W+ + g + gY+v++ ++ + +
sp|Q99715| 904 ErGSPQDLVTKDITDTSIGAYWTSA--PGMVRGYRVSW-KSLYDDVd 947
wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+ e+++p ++ + ++++L+P t+Y ++V A G+G++
sp|Q99715| 948 TGEKNLPEDAIHTMIENLQPETKYRISVFATYSSGeGEPL 987
thaumatin: domain 1 of 1, from 1025 to 1032: score -2.3, E = 86
*->NYrVvFCP<-*
NYrVv P
sp|Q99715| 1025 NYRVVYRP 1032
fn3: domain 7 of 18, from 995 to 1077: score 50.5, E = 4e-13
*->PsaP.tnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
+s+ ++ l+v + t+++++++W+p+ g++ +Y+v yR p + g+
sp|Q99715| 995 LSQDsKTLKVDEETENTMRVTWKPA--PGKVVNYRVVYR-PHGRGKQ 1038
neltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
vp+t ts +l+ L+P t+Y ++V + G+G+
sp|Q99715| 1039 MVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKMGeGKLR 1077
Myelin_MBP: domain 1 of 1, from 1068 to 1086: score -0.5, E = 99
*->iFKLGgsgsRdrsrsgSPmaR<-*
i+K+G + r +sg + R
sp|Q99715| 1068 IYKMGE--GKLRQGSGTTASR 1086
Morbilli_P: domain 1 of 1, from 1075 to 1095: score -1.2, E = 88
*->kcktESGTtasp.rsqNniEs<-*
k ++SGTtas+ +s+ n
sp|Q99715| 1075 KLRQGSGTTASRfKSPRNLKT 1095
fn3: domain 8 of 18, from 1090 to 1166: score 43.6, E = 4e-11
*->PtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.wnel
P+nl+ +d t +s++++W+p+ g++ gY+vt + p+++ + el
sp|Q99715| 1090 PRNLKTSDPTMSSFRVTWEPA--PGEVKGYKVTFH-PTGDDRrLGEL 1133
tvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
v + ++++l+ L++gt+Y+v V +g eS
sp|Q99715| 1134 VVGPYDNTVVLEELRAGTTYKVNVFGMFDG--GES 1166
Ribosomal_L37ae: domain 1 of 1, from 1217 to 1231: score 1.0, E = 81
*->tVrsairRLrelkEs<-*
tVrs i R++e +
sp|Q99715| 1217 TVRSFISRIVEVFDI 1231
MGS: domain 1 of 1, from 1305 to 1332: score 4.0, E = 13
*->aLiSvsDkdKkaellplAkkLvelGrykLyA<-*
+Li+ k+++ + ++ kkL+++G ++L+A
sp|Q99715| 1305 VLIT-DGKSQD-DVEAPSKKLKDEG-VELFA 1332
Pribosyltran: domain 1 of 1, from 1298 to 1334: score 1.3, E = 32
*->pGakvvgvavlvdrpeggarer........veslivvd<-*
p+a+++gv+++ ++ +++++e+++++ +++ +l+ ++
sp|Q99715| 1298 PRARKIGVLITDGK-SQDDVEApskklkdeGVELFAIG 1334
AOX: domain 1 of 1, from 1301 to 1352: score -2.0, E = 97
*->rstssvrtlshkktsskapgssltvkpgaggnkskkavvsywgvevp
r ++ t ++ ++ +ap+++ ++++ + +a++++ +ev+
sp|Q99715| 1301 RKIGVLITDGKSQDDVEAPSKK-----LKDEGVELFAIGIKNADEVE 1342
pkvtkedgse<-*
k+++ d+ +
sp|Q99715| 1343 LKMIATDPDD 1352
vwa: domain 3 of 4, from 1199 to 1371: score 223.5, E = 1.4e-64
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Div+L+DGS+Sig++nF +v+ F++r+ve +d+gp + v+++
sp|Q99715| 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGP-KR-----VQIA 1239
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
l+QYS+++rtE + ln++++k+++lqa+ +++ y gg t Tg AL+
sp|Q99715| 1240 LAQYSGDPRTE--WQLNAHRDKKSLLQAVANLP----YKGGNTLTGMALN 1283
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+ + + f+ +G+R ++a+k+ V++TDG+sqdd ++++++
sp|Q99715| 1284 FIRQQNFRTQAGMR------PRARKIGVLITDGKSQDD------VEAPSK 1321
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
+lk+ +gve faiG++nad + eL+ IA++pd+ h ++v dfe+L+ +
sp|Q99715| 1322 KLKD-EGVELFAIGIKNAD---EVELKMIATDPDdTHDYNVADFESLSRI 1367
qelL<-*
++ L
sp|Q99715| 1368 VDDL 1371
fn3: domain 9 of 18, from 1385 to 1463: score 76.9, E = 9.5e-21
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+ aP+nl+++++t s+++sW+pp + +++Y+v+y +p++gg+ +
sp|Q99715| 1385 LEAPSNLVISERTHRSFRVSWTPP--SDSVDRYKVEY-YPVSGGKRQ 1428
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+ v++ +ts +l++LkP teY+v V++v ++ ++S
sp|Q99715| 1429 EFYVSRMETSTVLKDLKPETEYVVNVYSVVED--EYS 1463
fn3: domain 10 of 18, from 1474 to 1554: score 58.0, E = 2.8e-15
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge..
P ++ l + dv++t+++++W+p g tgY ++y +p+ + e++
sp|Q99715| 1474 PVPVVSLNIYDVGPTTMHVQWQPV---GGATGYILSY-KPVKDTEpt 1516
.wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
+++e+++ +t + ++lt+L+P+teY v+VqAv + S
sp|Q99715| 1517 rPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHD--LTS 1554
Apidaecin: domain 1 of 1, from 1555 to 1575: score 2.0, E = 32
*->EPGnnRPvYiPqPRPPHPRlr<-*
EP R v +P PRP +lr
sp|Q99715| 1555 EPVTVREVTLPLPRPQDLKLR 1575
Ran_BP1: domain 1 of 1, from 1591 to 1605: score 1.6, E = 35
*->aKpeqlAirFKtkEe<-*
+K+ +++r Kt+Ee
sp|Q99715| 1591 GKVRKYIVRYKTPEE 1605
fn3: domain 11 of 18, from 1566 to 1643: score 58.5, E = 2e-15
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
++ P++l+ +dvt +++ + W+p g++ +Y v+y ++ +++ +
sp|Q99715| 1566 LPRPQDLKLRDVTHSTMNVFWEPV--PGKVRKYIVRY-KTP-EEDVK 1608
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+ v++++ts l++L t Y+v+V Av ++ eS
sp|Q99715| 1609 EVEVDRSETSTSLKDLFSQTLYTVSVSAVHDE--GES 1643
fn3: domain 12 of 18, from 1654 to 1732: score 60.2, E = 6.3e-16
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
P +aPtnl++t+vts ++ +W++ ++++ Y++t+ p ++ ++
sp|Q99715| 1654 PvPAPTNLKITEVTSEGFRGTWDHG--ASDVSLYRITW-GPFGSSDK 1697
neltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e ++ g++++ ++++L+P+t Yev+++A+ ++ eS
sp|Q99715| 1698 METILNGDENTLVFENLNPNTIYEVSITAIYAD---ES 1732
lectin_legB: domain 1 of 1, from 1770 to 1791: score 4.8, E = 5.5
*->TvsWdlvngkGevAtVlItYdast<-*
Tv+Wd ++ G+v + +ItY+ st
sp|Q99715| 1770 TVKWDPAS--GRVQKYRITYQPST 1791
fn3: domain 13 of 18, from 1752 to 1836: score 79.0, E = 2.4e-21
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.
P+s P+nl+v + ts+slt+ W+p+ +g +++Y++ty qp+ g+++
sp|Q99715| 1752 PkSGPRNLQVYNATSNSLTVKWDPA--SGRVQKYRITY-QPSTGEGn 1795
wneltvpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
+++ t+ g ++s++l+ LkP+t+Y+++V ++ +G++G+ +
sp|Q99715| 1796 EQTTTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGegGRMT 1836
Lipoate_B: domain 1 of 1, from 1898 to 1920: score 0.7, E = 7.8
*->dkvnkirarqpkdtillleHpPVYTlG<-*
+ i +dt++++ + PVYT G
sp|Q99715| 1898 A----ILRNLQPDTSYTVTVVPVYTEG 1920
fn3: domain 14 of 18, from 1844 to 1926: score 52.6, E = 1e-13
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+ ++nl+v d ++++l ++W+++ g Y++ y p+ g++
sp|Q99715| 1844 LNTVRNLRVYDPSTSTLNVRWDHA--EGNPRQYKLFY-APA-AGGPE 1886
elt.vpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
el ++pg+t+ ++l++L+P+t Y+v+V+ v ++G++G+ S
sp|Q99715| 1887 ELVpIPGNTNYAILRNLQPDTSYTVTVVPVYTEGdgGRTS 1926
fn3: domain 15 of 18, from 1938 to 2016: score 59.3, E = 1.2e-15
*->tnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.wnelt
+n++v + t++ l ++W+p+ gp+ Y+v y +p++g + ++
sp|Q99715| 1938 RNVQVYNPTPNRLGVRWDPA--PGPVLQYRVVY-SPVDGTRpSESIV 1981
vpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
vpg+t+ ++l+ L P+t Y+v ++A+ +G+G +S
sp|Q99715| 1982 VPGNTRMVHLERLIPDTLYSVNLVALYSDGeGNPS 2016
RPH3A_effector: domain 1 of 1, from 2011 to 2030: score -0.3, E = 34
*->gagdtsRSpdGeslvrsenrV<-*
g+g s +G +l+rs++r
sp|Q99715| 2011 GEGNPS-PAQGRTLPRSGPRN 2030
fn3: domain 16 of 18, from 2024 to 2108: score 68.1, E = 3.4e-18
*->P.saPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggew
P+s P+nl+v + t++sl++ W+++ +gp++ Y++ y +p+ g +
sp|Q99715| 2024 PrSGPRNLRVFGETTNSLSVAWDHA--DGPVQQYRIIY-SPTVGDPI 2067
nelt.vpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
e+t+vpg ++++l+ L+P+t+Y+++V+Av ++G++G+ +
sp|Q99715| 2068 DEYTtVPGRRNNVILQPLQPDTPYKITVIAVYEDGdgGHLT 2108
fn3: domain 17 of 18, from 2116 to 2193: score 70.4, E = 7.3e-19
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+ +P+n++++d t +++sW+p+ +p+ gY++ y +p++++e+
sp|Q99715| 2116 LLPPQNIHISDEWYTRFRVSWDPS--PSPVLGYKIVY-KPVGSNEPM 2159
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e v t sytl++L+P t+Y v V+A+ + S
sp|Q99715| 2160 EAFVGEMT-SYTLHNLNPSTTYDVNVYAQYDS--GLS 2193
fn3: domain 18 of 18, from 2204 to 2281: score 37.8, E = 1.9e-09
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
+t+l+ ++++++ + Wsp + t+Y++++ +p++g +
sp|Q99715| 2204 YLNVTDLKTYQIGWDTFCVKWSPH---RAATSYRLKL-SPADGTRGQ 2246
eltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
e+tv g++ts+ +tgL P+t+Y v+V ++ + e
sp|Q99715| 2247 EITVRGSETSHCFTGLSPDTDYGVTVFVQTPN--LEG 2281
Fz: domain 1 of 1, from 2302 to 2323: score -0.1, E = 50
*->eglgvpptpipPCRslCEavrelg<-*
+++++ppt ipP R++C +++ +
sp|Q99715| 2302 PTPPPPPT-IPPARDVCKGAKA-D 2323
vwa: domain 4 of 4, from 2323 to 2496: score 200.6, E = 7.4e-58
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL D S+Sig +nF++v F+ + v+ +d++ + ++V+
sp|Q99715| 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAG-----IQVS 2364
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
vQYSd+v+ E fkln+y +k+ l alq+ir y gg t Tg+AL
sp|Q99715| 2365 FVQYSDEVKSE--FKLNTYNDKALALGALQNIR----YRGGNTRTGKALT 2408
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+ +++ t +sG+R +++pkvlVv+TDGrsqd +++++
sp|Q99715| 2409 FIKEKVLTWESGMR------KNVPKVLVVVTDGRSQDE------VKKAAL 2446
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
++++ g+ vf++Gv ++d + eL IAskp+++hvf+v+dfe+ +++
sp|Q99715| 2447 VIQQ-SGFSVFVVGVADVD---YNELANIASKPSeRHVFIVDDFESFEKI 2492
qelL<-*
++ L
sp|Q99715| 2493 EDNL 2496
fibrinogen_C: domain 1 of 1, from 2662 to 2672: score 1.4, E = 15
*->tgKDCqdilqk<-*
+++DC++i+ k
sp|Q99715| 2662 IYIDCYEIIEK 2672
MAP1B_neuraxin: domain 1 of 1, from 2666 to 2672: score 4.8, E = 9.9
*->sYEttEK<-*
+YE++EK
sp|Q99715| 2666 CYEIIEK 2672
TSPN: domain 1 of 1, from 2520 to 2712: score 278.3, E = 4.3e-80
*->gqdllqvfdLpessfsvrkavglkatirvrGsdpsspAYrlgktdri
g+++l++++L+e++f+ ++v+l++ Gs+ps++AYr++k
sp|Q99715| 2520 GFKMLEAYNLTEKNFASVQGVSLES-----GSFPSYSAYRIQK---- 2557
pavvsqptrrlfPAsglpedFsllttfrqapeTpksrgvLfaiydaqqnv
+a+v+qpt++l+P +glp+ ++++++fr++peTp +++++++i+d+ +++
sp|Q99715| 2558 NAFVNQPTADLHP-NGLPPSYTIILLFRLLPETPSDPFAIWQITDR-DYK 2605
rqlglevneVrDGrantlllryqkgsdGkvhtvvFrg.EllpLaDgqWHk
+q+g++ + + ++tl++++ k+++G+v+tv+F+++E+ +L++g++Hk
sp|Q99715| 2606 PQVGVIAD----PSSKTLSFFN-KDTRGEVQTVTFDTeEVKTLFYGSFHK 2650
laLsVsgssRGapavtLYVDCnkidsrpdldrpfqglppidtdGievlga
++++V+++s v++Y+DC++i +++ +++++ +i+tdG+e+lg+
sp|Q99715| 2651 VHIVVTSKS-----VKIYIDCYEIIEKD-IKEAG----NITTDGYEILGK 2690
qaandekkfqgdLQqlkivcdp<-*
+ ++++k++ +++Q+++ivc+p
sp|Q99715| 2691 LLKGERKSAAFQIQSFDIVCSP 2712
Collagen: domain 1 of 6, from 2747 to 2798: score 39.0, E = 3e-09
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
GppGppGp+G pG++Gp+G+ G +Ga GppGp+G+ GpPGp+GppGp
sp|Q99715| 2747 GPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGP 2793
pGppG<-*
+Gp G
sp|Q99715| 2794 QGPNG 2798
Collagen: domain 2 of 6, from 2802 to 2853: score 36.6, E = 1.5e-08
*->pGppGppGppGppGpaGapGppGppGepGpPGppGppGppGppGapG
pG++G G +G +G++G pG G pG pGpPGp GppG +G +G++
sp|Q99715| 2802 PGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDS 2848
apGpp<-*
a+Gp+
sp|Q99715| 2849 AMGPR 2853
Collagen: domain 3 of 6, from 2854 to 2896: score 27.2, E = 5.5e-06
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppG<-*
GppG+pG+pG pG +Gp+G pG +G G pGp+G +G+ G +G
sp|Q99715| 2854 GPPGRPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRG 2896
Peptidase_M29: domain 1 of 1, from 2920 to 2928: score -2.4, E = 58
*->MdaFkkeLe<-*
M++F + L+
sp|Q99715| 2920 MNRFNQMLN 2928
Collagen: domain 4 of 6, from 2941 to 2989: score 34.1, E = 7.1e-08
*->pGppGppGppGpaGapGppGppGepGpPGppGppGppGppGapGapG
pGppGppGppG aGa+G+pGp G pG+PG pG GppG++G pG++G
sp|Q99715| 2941 PGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKG 2987
pp<-*
++
sp|Q99715| 2988 ER 2989
Collagen: domain 5 of 6, from 2995 to 3008: score 7.6, E = 1.3
*->GppGppGppGppGp<-*
Gp+G+pGppGp+G+
sp|Q99715| 2995 GPRGLPGPPGPQGE 3008
Collagen: domain 6 of 6, from 3012 to 3042: score 21.3, E = 0.00022
*->GppGppGppGppGppGppGppGpaGapGppG<-*
GppG+ G++GppGppG+pG G +G+pGppG
sp|Q99715| 3012 GPPGSTGSRGPPGPPGRPGNSGIQGPPGPPG 3042
//
Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib
Sequence file: tem36
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Prosite
---------------------------------------------------------
| ppsearch (c) 1994 EMBL Data Library |
| based on MacPattern (c) 1990-1994 R. Fuchs |
---------------------------------------------------------
PROSITE pattern search started: Sun Jan 7 20:43:35 2001
Sequence file: tem36
----------------------------------------
Sequence sp|Q99715|CA1C_HUMAN (3063 residues):
Matching pattern PS00001 ASN_GLYCOSYLATION:
700: NVTA
1763: NATS
2206: NVTD
2528: NLTE
2679: NITT
Total matches: 5
Matching pattern PS00004 CAMP_PHOSPHO_SITE:
495: KKFT
775: RRRT
Total matches: 2
Matching pattern PS00005 PKC_PHOSPHO_SITE:
117: STK
346: SSK
390: SVR
493: TLK
519: TGK
665: TYK
690: SLK
738: SFK
829: TMK
860: TVR
938: SWK
1001: TLK
1011: TMR
1015: TWK
1089: SPR
1102: SFR
1152: TYK
1217: TVR
1320: SKK
1378: SVK
1394: SER
1397: THR
1400: SFR
1469: TEK
1506: SYK
1558: TVR
1620: SLK
1651: TTR
1695: SDK
1740: SER
1770: TVK
1777: SGR
1836: TGR
1846: TVR
1928: TGR
2232: SYR
2249: TVR
2285: SVK
2291: TVK
2403: TGK
2476: SER
2530: TEK
2600: TDR
2615: SSK
2656: TSK
2659: SVK
2715: TSR
2725: SRR
2844: TGK
2871: SGK
2936: SSR
Total matches: 51
Matching pattern PS00006 CK2_PHOSPHO_SITE:
19: SSIE
44: SWAE
75: STTE
95: TSYD
96: SYDE
168: SAFD
188: TRTE
230: TFTE
253: SQDE
318: SGVD
329: SGEE
390: SVRD
411: TSSE
417: SIME
498: TKVE
567: SDVE
582: SELE
598: TVED
639: SFSE
665: TYKE
676: TVVE
718: TTEE
786: TKYE
900: TTLE
901: TLEE
907: SPQD
941: SLYD
960: TMIE
980: SSGE
1059: TTYD
1124: TGDD
1176: TLSD
1188: SGME
1194: TRAE
1312: SQDD
1348: TDPD
1433: SRME
1456: SVVE
1526: TVND
1558: TVRE
1602: TPEE
1620: SLKD
1647: TAQE
1718: TIYE
1732: SESD
1790: STGE
1918: TEGD
1969: SPVD
2009: SDGE
2062: TVGD
2178: TTYD
2238: SPAD
2285: SVKE
2333: SIGD
2380: TYND
2437: SQDE
2589: TPSD
2600: TDRD
2626: TRGE
2715: TSRD
2725: SRRD
2844: TGKD
Total matches: 62
Matching pattern PS00008 MYRISTYL:
215: GNTMTG
236: GARVGF
275: GIKAAD
409: GMTSSE
514: GGSTNT
515: GSTNTG
536: GSRSNV
575: GVKDAV
724: GAPRNL
801: GTPLTG
806: GNAATE
872: GLKEGT
876: GTQYAL
890: GAGDAL
922: GAYWTS
930: GMVRGY
1079: GSGTTA
1081: GTTASR
1159: GMFDGG
1171: GQEMTT
1274: GNTLTG
1279: GMALNF
1304: GVLITD
1334: GIKNAD
1468: GTEKTL
1498: GGATGY
1739: GSERTL
1794: GNEQTT
1802: GGRQNS
1832: GGRMTG
1922: GGRTSD
1935: GLARNV
1973: GTRPSE
2104: GGHLTG
2109: GNGRTV
2245: GQEITV
2252: GSETSH
2360: GIQVSF
2389: GALQNI
2399: GNTRTG
2420: GMRKNV
2545: GSFPSY
2572: GLPPSY
2678: GNITTD
2756: GGPGAK
2768: GISGAI
2951: GSAGAR
2962: GGRPGF
2990: GTGSSG
3015: GSTGSR
Total matches: 50
Matching pattern PS00009 AMIDATION:
1424: GGKR
2074: PGRR
Total matches: 2
Matching pattern PS00016 RGD:
862: RGD
2779: RGD
2895: RGD
Total matches: 3
Total no of hits in this sequence: 175
========================================
1314 pattern(s) searched in 1 sequence(s), 3063 residues.
Total no of hits in all sequences: 175.
Search time: 00:00 min
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Profile Search
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with motif search against own library
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
argv[1]=P
argv[2]=-m /data/patterns/own/motif.fa
argv[4]=-seq tem36
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
SeqTyp=2 : PROTEIN search;
>APC D-Box is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 3063 units
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~
Start with HMM-search search against own library
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm.lib
Sequence file: tem36
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm-f.lib
Sequence file: tem36
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR - Homo sapiens (Human).
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DOClong 1.2 44 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DOClong 1/1 1847 1855 .. 116 124 .] 1.2 44
Alignments of top-scoring domains:
DOClong: domain 1 of 1, from 1847 to 1855: score 1.2, E = 44
*->iRqlkiygP<-*
+R l++y+P
sp|Q99715| 1847 VRNLRVYDP 1855
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
L. Aravind's signalling DB
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR -
Homo sapiens (Human).
(3063 letters)
Searching..................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
VWA Von Willebrand factor A domain 170 2e-44
FN3 Fibronectin type III domain (Protein-protein interation ... 107 2e-25
UBA Ubiquitin pathway associated domain 30 0.039
RHOGEF RHO-type GTPase GDP exchange factor 29 0.074
RASGAP RAS-type GTPase GTP hydrolysis activating protein 27 0.32
UBHYD Ubiquitin C-terminal hydrolase domain 26 0.65
CATH Cathepsin like protease domain 26 0.65
S1 S1 RNA binding domain 25 1.2
PCNA Proliferating Cell nuclear antigen like domain 25 1.4
SGTP Small GTPAses 25 1.7
KIN Protein kinase domain 25 1.9
PUM Pumilio repeat RNA binding domain 24 2.1
INSL Insulinase like Metallo protease domain 24 2.3
AAA AAA+ ATPase Module 23 4.6
SCP SCP/PR1 domain (Domain found in plant pathogenesis relat... 23 5.1
SNARE Alpha helical domains which are involved in vesicle fu... 23 5.3
PTB Phospho-Tyrosine Binding domain 23 5.8
MIZFIN MIZ type Cysteine zinc DNA binding domain 23 6.2
DSP Dual specificity protein phosphatase 23 6.8
ARR Arrestin domain 23 8.0
AP2 A plant specific DNA binding domain (Apetala 2 like) 22 8.7
DNASE1 DNASE-1/Sphingomyelinase like domain 22 9.5
CALC Calcineurin like Phosphoesterase domain 22 9.6
ARM Armadillo repeat 22 9.8
>VWA Von Willebrand factor A domain
Length = 255
Score = 170 bits (428), Expect = 2e-44
Identities = 34/229 (14%), Positives = 34/229 (14%), Gaps = 15/229 (6%)
Query: 95 TSYDEVEESVPVIGQLTIQTGSSTKPVEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRN 154
Sbjct: 12 RSWDLVKVD--DEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEK 69
Query: 155 NFK-----YILDFIAALVSAFDIGEEKTRVGVVQYSS-DTRTEFNLNQYYQRDELLAAIK 208
Sbjct: 70 DLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSI 129
Query: 209 KIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVEI--PARELRN 266
Sbjct: 130 RKQEPKGNPSLQNALEMARGLL---LPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVS 186
Query: 267 VGVEVFSLGIKA--ADAKELKQIASTPSLNHVFNVANFDAIVDIQNEII 313
Sbjct: 187 EKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAV 235
Score = 160 bits (402), Expect = 2e-41
Identities = 28/214 (13%), Positives = 28/214 (13%), Gaps = 14/214 (6%)
Query: 1165 ESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADIVLLVDGSWSIGRANFRTVR----- 1219
Sbjct: 21 DEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMII 80
Query: 1220 SFISRIVEVFDIGPKRVQIALAQYS-GDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLT 1278
Sbjct: 81 QYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSL 140
Query: 1279 GMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD--DVEAPSKKLKDEGVELFAIGIK 1336
Sbjct: 141 QNALEMARGL---LLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGL- 196
Query: 1337 NADEVELKMI--ATDPDDTHDYNVADFESLSRIV 1368
Sbjct: 197 SAQVAICKELCKATNYGDESFYKILLDETHLKEL 230
Score = 144 bits (361), Expect = 2e-36
Identities = 27/237 (11%), Positives = 27/237 (11%), Gaps = 23/237 (9%)
Query: 393 DLSADTEYQISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYSIG 452
Sbjct: 11 KRSWDLVKVDDEGDMASLVAS--IVEARKKRTAKKNITPYQRGIIR-SLILTLDCSEAML 67
Query: 453 IANFVKVRA-----FLEVLVKSFEISPNRVQISLVQYS-RDPHTEFTL-KKFTKVEDIIE 505
Sbjct: 68 EKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALK 127
Query: 506 AINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFR--DPAIK 563
Sbjct: 128 SIRKQEP-KGNPSLQNALEMARGLL---LPVPAHCTREVLIVFGSLSTTDPGDIHQTIDS 183
Query: 564 LRNSDVEIFAVGVKDAVRSELEAIAS---PPAETHVFTVEDFDAFQRISFELTQSIC 617
Sbjct: 184 LVSEKIRVKVLGL-SAQVAICKELCKATNYGDESFYKILLDETHLKEL---FNEAVT 236
Score = 118 bits (295), Expect = 9e-29
Identities = 27/186 (14%), Positives = 27/186 (14%), Gaps = 16/186 (8%)
Query: 2318 KGAKADIVFLTDASWSIGDDNFNK-----VVKFIFNTVGGFDEISPAGIQVSFVQYSDEV 2372
Sbjct: 50 RGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFF-DQNPISQMGIIIMRNGL 108
Query: 2373 KS-EFKLNT-YNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLV 2430
Sbjct: 109 AQLVSQVSGNPQDHIDALKSIRKQEP-KGNPSLQNALEMARGLL---LPVPAHCTREVLI 164
Query: 2431 VVTDGRSQD--EVKKAALVIQQSGFSVFVVGV-ADVD-YNELANIASKPSERHVFIVDDF 2486
Sbjct: 165 VFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDE 224
Query: 2487 ESFEKI 2492
Sbjct: 225 THLKEL 230
>FN3 Fibronectin type III domain (Protein-protein interation domain)
Length = 154
Score = 107 bits (265), Expect = 2e-25
Identities = 32/170 (18%), Positives = 32/170 (18%), Gaps = 18/170 (10%)
Query: 1754 SGPRNLQVYNATSNSLTVKWDPASGRVQ-KYRITYQPSTGEGNEQTTTIGGRQNSVVLQK 1812
Sbjct: 2 SAVFDIHVVYVTTTEMWLDWKSPDGASEYVYHLVI-----ESKHGSNHTSTYDKAITLQG 56
Query: 1813 LKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTLNVRWDHAEGNPR 1872
Sbjct: 57 LIPGTLYNITISPEVDHVWG-----------AIQVFDVTAVNISATSLTLIWKVSDNESS 105
Query: 1873 QYKLFYAPAAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYTEGDG 1922
Sbjct: 106 SNYTYKIHVAGETDS-SNLNVSEPRAVIPGLRSSTFYNITVCPVLGDIEG 154
Score = 103 bits (255), Expect = 4e-24
Identities = 33/169 (19%), Positives = 33/169 (19%), Gaps = 16/169 (9%)
Query: 724 GAPRNLKVTDETTDSFKITWTQAPGRVLRCRIIYRPVAGGESREVTTPPNQRRRTLENLI 783
Sbjct: 2 SAVFDIHVVYVTTTEMWLDWKSPDGAS---EYVYHLVIESKHGSNHTSTYDKAITLQGLI 58
Query: 784 PDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGKVKQ 843
Sbjct: 59 PGTLYNITISPEVDHVWGAIQ------------VFDVTAVNISATSLTLIWKVSDNESSS 106
Query: 844 YLVTYTPVAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAG 892
Sbjct: 107 NYTYKIHVAGE-TDSSNLNVSEPRAVIPGLRSSTFYNITVCPVLGDIEG 154
Score = 90.8 bits (223), Expect = 2e-20
Identities = 29/168 (17%), Positives = 29/168 (17%), Gaps = 19/168 (11%)
Query: 2026 SGPRNLRVFGETTNSLSVAWDHADGPVQQ-YRIIYSPTVGDPIDEYTTVPGRRNNVILQP 2084
Sbjct: 2 SAVFDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHGS-----NHTSTYDKAITLQG 56
Query: 2085 LQPDTPYKITVIAVYEDGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVL 2144
Sbjct: 57 LIPGTLYNITISPEVDHVW-----------GAIQVFDVTAVNISATSLTLIWKVSDNESS 105
Query: 2145 -GYKIVYKPVGSNEPMEAFVGEMTSYTLHNLNPSTTYDVNVYAQYDSG 2191
Sbjct: 106 SNYTYKIHVAGETDSSNLNVS-EPRAVIPGLRSSTFYNITVCPVLGDI 152
Score = 90.1 bits (221), Expect = 4e-20
Identities = 28/167 (16%), Positives = 28/167 (16%), Gaps = 20/167 (11%)
Query: 1387 APSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTVLKDLKP 1446
Sbjct: 3 AVFDIHVVYVTTTEMWLDWKSPDGASEYV---YHLVIESKHGSNHTSTYDKAITLQGLIP 59
Query: 1447 ETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPV--GGATGYI 1504
Sbjct: 60 GTLYNITISPEVDHVWGAI----------QVFDVTAVNISATSLTLIWKVSDNESSSNYT 109
Query: 1505 LSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHD 1551
Sbjct: 110 YKIHVAGETD-----SSNLNVSEPRAVIPGLRSSTFYNITVCPVLGD 151
Score = 81.1 bits (198), Expect = 2e-17
Identities = 30/169 (17%), Positives = 30/169 (17%), Gaps = 23/169 (13%)
Query: 1000 KTLKVDEETENTMRVTWKP--APGKVVNYRVVYRPHGRGKQMVAKVPPTVTSTVLKRLQP 1057
Sbjct: 5 FDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHGSN-----HTSTYDKAITLQGLIP 59
Query: 1058 QTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTMSSFRVTWEPAP-GEVKG 1116
Sbjct: 60 GTLYNITISPEVDHVWGAI------------QVFDVTAVNISATSLTLIWKVSDNESSSN 107
Query: 1117 YKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAGTTYKVNVFGMFDGGE 1165
Sbjct: 108 YTYKIHVAGETD---SSNLNVSEPRAVIPGLRSSTFYNITVCPVLGDIE 153
Score = 73.7 bits (179), Expect = 3e-15
Identities = 25/162 (15%), Positives = 25/162 (15%), Gaps = 14/162 (8%)
Query: 1569 PQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSETSTSLKDLFSQT 1628
Sbjct: 4 VFDIHVVYVTTTEMWLDWKSPDG--ASEYVYHLVIESKHGSNHTSTYDKAITLQGLIPGT 61
Query: 1629 LYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRIT 1688
Sbjct: 62 LYNITISPEVDHVWGA-----------IQVFDVTAVNISATSLTLIWKVSDNESSSNYTY 110
Query: 1689 WGPFGSSDKMETILNGDENTLVFENLNPNTIYEVSITAIYAD 1730
Sbjct: 111 KIHVAGETD-SSNLNVSEPRAVIPGLRSSTFYNITVCPVLGD 151
Score = 53.4 bits (127), Expect = 4e-09
Identities = 13/77 (16%), Positives = 13/77 (16%), Gaps = 2/77 (2%)
Query: 1937 ARNVQVYNPTPNRLGVRWDPAPGPVLQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIP 1996
Sbjct: 80 VFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGE--TDSSNLNVSEPRAVIPGLRS 137
Query: 1997 DTLYSVNLVALYSDGEG 2013
Sbjct: 138 STFYNITVCPVLGDIEG 154
Score = 51.9 bits (123), Expect = 1e-08
Identities = 17/90 (18%), Positives = 17/90 (18%), Gaps = 5/90 (5%)
Query: 634 PPKDLSFSEVTSYGFKTNWS-PAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLK 692
Sbjct: 3 AVFDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHGS----NHTSTYDKAITLQGLI 58
Query: 693 PETLYLVNVTAEYEDGFSIPLAGEETTEEV 722
Sbjct: 59 PGTLYNITISPEVDHVWGAIQVFDVTAVNI 88
Score = 51.9 bits (123), Expect = 1e-08
Identities = 15/89 (16%), Positives = 15/89 (16%), Gaps = 6/89 (6%)
Query: 1938 RNVQVYNPTPNRLGVRWDPAPGPV-LQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIP 1996
Sbjct: 5 FDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHGSN-----HTSTYDKAITLQGLIP 59
Query: 1997 DTLYSVNLVALYSDGEGNPSPAQGRTLPR 2025
Sbjct: 60 GTLYNITISPEVDHVWGAIQVFDVTAVNI 88
Score = 47.2 bits (111), Expect = 3e-07
Identities = 15/75 (20%), Positives = 15/75 (20%)
Query: 2207 VTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDT 2266
Sbjct: 80 VFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEPRAVIPGLRSST 139
Query: 2267 DYGVTVFVQTPNLEG 2281
Sbjct: 140 FYNITVCPVLGDIEG 154
Score = 45.3 bits (106), Expect = 1e-06
Identities = 16/92 (17%), Positives = 16/92 (17%), Gaps = 3/92 (3%)
Query: 27 PPSDLNFKIIDENTVHMSWAEPVDPIVGYRITVDPTTDGPTKEFTLSASTTETLLSELVP 86
Sbjct: 3 AVFDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHG---SNHTSTYDKAITLQGLIP 59
Query: 87 ETEYVVTITSYDEVEESVPVIGQLTIQTGSST 118
Sbjct: 60 GTLYNITISPEVDHVWGAIQVFDVTAVNISAT 91
Score = 44.9 bits (105), Expect = 1e-06
Identities = 16/92 (17%), Positives = 16/92 (17%), Gaps = 4/92 (4%)
Query: 908 PQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHTMIENLQP 967
Sbjct: 4 VFDIHVVYVTTTEMWLDWKSPDG--ASEYVYHLVIES--KHGSNHTSTYDKAITLQGLIP 59
Query: 968 ETKYRISVFATYSSGEGEPLTGDATTELSQDS 999
Sbjct: 60 GTLYNITISPEVDHVWGAIQVFDVTAVNISAT 91
Score = 44.5 bits (104), Expect = 2e-06
Identities = 9/80 (11%), Positives = 9/80 (11%), Gaps = 4/80 (5%)
Query: 336 PPSNLIAMEVSSKYVKLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLS 395
Sbjct: 3 AVFDIHVVYVTTTEMWLDWKSPDGASE----YVYHLVIESKHGSNHTSTYDKAITLQGLI 58
Query: 396 ADTEYQISVSAMKGMTSSEP 415
Sbjct: 59 PGTLYNITISPEVDHVWGAI 78
Score = 41.4 bits (96), Expect = 2e-05
Identities = 11/56 (19%), Positives = 11/56 (19%), Gaps = 2/56 (3%)
Query: 653 SPAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVNVTAEYEDG 708
Sbjct: 99 VSDNESSSNYTYKIHVAGETDSSNL--NVSEPRAVIPGLRSSTFYNITVCPVLGDI 152
Score = 41.4 bits (96), Expect = 2e-05
Identities = 12/77 (15%), Positives = 12/77 (15%), Gaps = 4/77 (5%)
Query: 336 PPSNLIAMEVSSKYVKLNWNPSPSP-VTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDL 394
Sbjct: 79 QVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSN---LNVSEPRAVIPGL 135
Query: 395 SADTEYQISVSAMKGMT 411
Sbjct: 136 RSSTFYNITVCPVLGDI 152
Score = 39.4 bits (91), Expect = 6e-05
Identities = 14/104 (13%), Positives = 14/104 (13%), Gaps = 2/104 (1%)
Query: 2207 VTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDT 2266
Sbjct: 4 VFDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIE--SKHGSNHTSTYDKAITLQGLIPGT 61
Query: 2267 DYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTI 2310
Sbjct: 62 LYNITISPEVDHVWGAIQVFDVTAVNISATSLTLIWKVSDNESS 105
Score = 34.7 bits (79), Expect = 0.002
Identities = 10/59 (16%), Positives = 10/59 (16%), Gaps = 3/59 (5%)
Query: 40 TVHMSWAEPVDP-IVGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSY 97
Sbjct: 92 SLTLIWKVSDNESSSNYTYKIHV--AGETDSSNLNVSEPRAVIPGLRSSTFYNITVCPV 148
Score = 32.8 bits (74), Expect = 0.006
Identities = 13/65 (20%), Positives = 13/65 (20%), Gaps = 2/65 (3%)
Query: 920 SIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHTMIENLQPETKYRISVFATY 979
Sbjct: 92 SLTLIWKVSDNESSSNYTYKIHVAGETD--SSNLNVSEPRAVIPGLRSSTFYNITVCPVL 149
Query: 980 SSGEG 984
Sbjct: 150 GDIEG 154
>UBA Ubiquitin pathway associated domain
Length = 255
Score = 30.1 bits (67), Expect = 0.039
Identities = 24/85 (28%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 2938 RNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPR 2997
Sbjct: 58 MGIPENLRQPEPQQQTAAAAE-----QPSTAATTAEQ--PAEDDLFAQAAQGGNASSGAL 110
Query: 2998 GLPGPPGPQGESRTGPPGSTGSRGP 3022
Sbjct: 111 GTTG--GATDAAQGGPPGSIGLTVE 133
Score = 23.1 bits (49), Expect = 5.1
Identities = 24/148 (16%), Positives = 24/148 (16%), Gaps = 33/148 (22%)
Query: 2849 AMGPRGPPGRPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQN--MMRA 2906
Sbjct: 97 AQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQ-----VVSGNPEALAP 151
Query: 2907 VARQVCE------QLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPG 2960
Sbjct: 152 LLENISARYPQLREHIMANPEVFVSMLLE----------------AVGDNMQDV--MEGA 193
Query: 2961 PGGRPGFPGTPGMQGPPGERGLPGEKGE 2988
Sbjct: 194 DDMVEG--EDIEVTGEAAAAGLGQGEGE 219
Score = 23.1 bits (49), Expect = 5.9
Identities = 14/42 (33%), Positives = 14/42 (33%)
Query: 2760 AKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 2801
Sbjct: 97 AQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSL 138
>RHOGEF RHO-type GTPase GDP exchange factor
Length = 176
Score = 29.2 bits (65), Expect = 0.074
Identities = 13/69 (18%), Positives = 13/69 (18%), Gaps = 6/69 (8%)
Query: 262 RELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQV---CS 318
Sbjct: 14 RELYTV-LLGYRAEMDNPEMFDLMPPLLRNKKDILF--GNMAEIYEFHNDIFLSSLENCA 70
Query: 319 GVDEQLGEL 327
Sbjct: 71 HAPERVGPC 79
Score = 22.2 bits (47), Expect = 9.7
Identities = 9/35 (25%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 1447 ETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLN 1481
Sbjct: 9 ERVYVRELYTVLLG-YRAEMDNPEMFDLMPPLLRN 42
>RASGAP RAS-type GTPase GTP hydrolysis activating protein
Length = 292
Score = 27.1 bits (59), Expect = 0.32
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 292 SLNHVFNVANFDAIVDIQNEIISQ--VCSGVDEQLGELVSGE-EVVEP 336
Sbjct: 14 TADHVFPLATYDDLMNLLLESVDQRPITVSAVSILGELVSGKTEVAQP 61
>UBHYD Ubiquitin C-terminal hydrolase domain
Length = 884
Score = 26.2 bits (57), Expect = 0.65
Identities = 14/56 (25%), Positives = 14/56 (25%)
Query: 1806 NSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTLN 1861
Sbjct: 427 NKTMIELSDNENPWTIFLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLN 482
>CATH Cathepsin like protease domain
Length = 371
Score = 26.1 bits (57), Expect = 0.65
Identities = 14/70 (20%), Positives = 14/70 (20%), Gaps = 8/70 (11%)
Query: 1176 TLSDTTVMPILSSGMECLTRAEA-DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPK 1234
Sbjct: 308 TPNQYVLKVTVQGETLCLSGFSGLDVPPPAGPLWILGDV-------FIGSYYTVFDRDND 360
Query: 1235 RVQIALAQYS 1244
Sbjct: 361 AVGFAKSSGS 370
>S1 S1 RNA binding domain
Length = 305
Score = 25.3 bits (55), Expect = 1.2
Identities = 4/44 (9%), Positives = 4/44 (9%), Gaps = 6/44 (13%)
Query: 296 VFNVANFDAIVDIQNEI-----ISQVCSGVDEQLGELVS-GEEV 333
Sbjct: 36 ICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDSAW 79
>PCNA Proliferating Cell nuclear antigen like domain
Length = 280
Score = 24.8 bits (54), Expect = 1.4
Identities = 11/136 (8%), Positives = 11/136 (8%), Gaps = 21/136 (15%)
Query: 1694 SSDKMETI---LNGDENTLVFENLNPNT----IYEVSITAIYADESESDDLIGSERTLPI 1746
Sbjct: 101 TPGTLTALRMCYQGYGHPLMLFLEEGGVVTVCKITTQEPEETLDFDFCSTNVMNKIILQ- 159
Query: 1747 LTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTTIGGRQN 1806
Sbjct: 160 --SEGLREAFSEL---DMTGDVLQITVSPDKPYFR--------LSTFGNAGNSHLDYPKD 206
Query: 1807 SVVLQKLKPDTPYTIT 1822
Sbjct: 207 SDLVEAFHCNKTQVNR 222
>SGTP Small GTPAses
Length = 164
Score = 24.7 bits (54), Expect = 1.7
Identities = 16/72 (22%), Positives = 16/72 (22%), Gaps = 8/72 (11%)
Query: 2334 IGDDNFNK---VVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSE-FKLNTYNDKALA-L 2388
Sbjct: 6 IGNAGTGKSCLLHQFIEKK---FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 62
Query: 2389 GALQNIRYRGGN 2400
Sbjct: 63 RSVTRSYYRGAA 74
>KIN Protein kinase domain
Length = 313
Score = 24.7 bits (53), Expect = 1.9
Identities = 11/53 (20%), Positives = 11/53 (20%), Gaps = 3/53 (5%)
Query: 2614 PSSKTLSFFNKD---TRGEVQTVTFDTEEVKTLFYGSFHKVHIVVTSKSVKIY 2663
Sbjct: 5 PTSDTSNFNDNISYFVYGSQFTVPRRYSIVKCIGHGAYGVVCSAKDNLTGEKV 57
>PUM Pumilio repeat RNA binding domain
Length = 337
Score = 24.4 bits (53), Expect = 2.1
Identities = 13/77 (16%), Positives = 13/77 (16%), Gaps = 18/77 (23%)
Query: 155 NFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKG 214
Sbjct: 155 KFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTL------QQIFKISVKIVQF---- 204
Query: 215 GNTMTGDAIDYLVKNTF 231
Sbjct: 205 --------LPGLINDQF 213
>INSL Insulinase like Metallo protease domain
Length = 433
Score = 24.1 bits (52), Expect = 2.3
Identities = 12/81 (14%), Positives = 12/81 (14%), Gaps = 15/81 (18%)
Query: 514 GGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFA 573
Sbjct: 91 GGNIN---AGTS-KDYTYYHVEIAHPYWKQALEVL-----YQLTMKA--TLDEEMIE--- 136
Query: 574 VGVKDAVRSELEAIASPPAET 594
Sbjct: 137 -KEKPIVIEELRRGKDNPTTV 156
>AAA AAA+ ATPase Module
Length = 298
Score = 23.3 bits (49), Expect = 4.6
Identities = 17/139 (12%), Positives = 17/139 (12%), Gaps = 1/139 (0%)
Query: 173 GEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLA-AIKKIPYKGGNTMTGDAIDYLVKNTF 231
Sbjct: 113 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGGDSEVQRTMLEL 172
Query: 232 TESAGARVGFPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTP 291
Sbjct: 173 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 232
Query: 292 SLNHVFNVANFDAIVDIQN 310
Sbjct: 233 NLTRGINLRKIAELMPGAS 251
>SCP SCP/PR1 domain (Domain found in plant pathogenesis related proteins and animal trypsin inhibitors)
Length = 159
Score = 23.3 bits (50), Expect = 5.1
Identities = 7/47 (14%), Positives = 7/47 (14%), Gaps = 7/47 (14%)
Query: 303 DAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPP-SNLIAMEVSSK 348
Sbjct: 4 QDILKEHNDFRQKIA------RGLETRGNPGPQPPAKNMKNLVWNDE 44
>SNARE Alpha helical domains which are involved in vesicle fusion
Length = 254
Score = 23.3 bits (50), Expect = 5.3
Identities = 12/73 (16%), Positives = 12/73 (16%), Gaps = 7/73 (9%)
Query: 2359 AGIQVSFVQYSDEVKSEFKLNTYN--DKALALGALQNIRYRGGNTRTGKALTFIKEKVLT 2416
Sbjct: 78 YPNVLAF-SFLDELQKEF-ITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLST- 134
Query: 2417 WESGMRKNVPKVL 2429
Sbjct: 135 --KINLSDMQMEI 145
>PTB Phospho-Tyrosine Binding domain
Length = 138
Score = 22.9 bits (49), Expect = 5.8
Identities = 13/86 (15%), Positives = 13/86 (15%), Gaps = 3/86 (3%)
Query: 427 VQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSR 486
Sbjct: 15 VETPKANGSDVAREAIHAIRF--QRDLKRSEQTRETAKLQKVEIRISIDNVIIADIK-TK 71
Query: 487 DPHTEFTLKKFTKVEDIIEAINTFPY 512
Sbjct: 72 APMYTFPLGRISFCADDKDDKRMFSF 97
>MIZFIN MIZ type Cysteine zinc DNA binding domain
Length = 172
Score = 23.1 bits (49), Expect = 6.2
Identities = 12/62 (19%), Positives = 12/62 (19%), Gaps = 7/62 (11%)
Query: 130 IQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTR 189
Sbjct: 72 LNDCSDV--DEIKFQEDGSWCPMRPK-----KEAMKVTSQPCTKVESSSVFSKPCSVTVA 124
Query: 190 TE 191
Sbjct: 125 SD 126
>DSP Dual specificity protein phosphatase
Length = 185
Score = 22.6 bits (48), Expect = 6.8
Identities = 17/87 (19%), Positives = 17/87 (19%), Gaps = 12/87 (13%)
Query: 1654 PVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMETILN-GDENTLVFE 1712
Sbjct: 21 GCYSLPSQPCNEVTPRIYVGNASV-AQDI--------PKLQKLGITHVLNAAEGRSFMHV 71
Query: 1713 NLNPNTIYEVSIT--AIYADESESDDL 1737
Sbjct: 72 NTNANFYKDSGITYLGIKANDTQEFNL 98
>ARR Arrestin domain
Length = 454
Score = 22.5 bits (48), Expect = 8.0
Identities = 7/47 (14%), Positives = 7/47 (14%)
Query: 684 TSVVLSSLKPETLYLVNVTAEYEDGFSIPLAGEETTEEVKGAPRNLK 730
Sbjct: 255 SNKTVKKLKIYIIQVADICLFTTASYSCEVARIESNEGFPVGPGGTL 301
>AP2 A plant specific DNA binding domain (Apetala 2 like)
Length = 218
Score = 22.4 bits (47), Expect = 8.7
Identities = 11/36 (30%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 278 AADAKELKQIASTPSLNHVFNVANFDAIVDIQNEII 313
Sbjct: 150 ATGSEELGEIVELPSLG-----SSYDGLTQLGNEFI 180
>DNASE1 DNASE-1/Sphingomyelinase like domain
Length = 388
Score = 22.4 bits (47), Expect = 9.5
Identities = 18/113 (15%), Positives = 18/113 (15%), Gaps = 6/113 (5%)
Query: 831 KLSWSGAPGKVKQYLVTYTPVAGGETQEVTVRGDTTNTVLQ--GLKEGTQYALSVTALYA 888
Sbjct: 126 ALKWEERKYLILEEILMYQPDVLC-LQEVDHYFDTFQPILSRLGYQCTFLAKPWSPCLDV 184
Query: 889 SGAGDALFGEGTTLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKS 941
Sbjct: 185 EHNNG---PDGCALFFLQDRFQLVNSAKIRLSARTLKTNQVAIAETLQCCETG 234
>CALC Calcineurin like Phosphoesterase domain
Length = 274
Score = 22.1 bits (46), Expect = 9.6
Identities = 13/87 (14%), Positives = 13/87 (14%), Gaps = 13/87 (14%)
Query: 2590 PSDPFAIWQITD-----RDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTF--DTEEVKT 2642
Sbjct: 10 EKPVIKLLQITDPHLFKDESAELLGVNTQASFAQVLKEIQQENNEFDVILATGD------ 63
Query: 2643 LFYGSFHKVHIVVTSKSVKIYIDCYEI 2669
Sbjct: 64 LVQDSSDEGYIRFVEMMKPFNKPVFWI 90
>ARM Armadillo repeat
Length = 532
Score = 22.2 bits (47), Expect = 9.8
Identities = 11/59 (18%), Positives = 11/59 (18%), Gaps = 3/59 (5%)
Query: 274 LGIKAADAKELKQIAST---PSLNHVFNVANFDAIVDIQNEIISQVCSGVDEQLGELVS 329
Sbjct: 352 SNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVE 410
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 105
Number of sequences better than 10.0: 24
Number of calls to ALIGN: 47
Length of query: 3063
Total length of test sequences: 20182
Effective length of test sequences: 15939.0
Effective search space size: 48176715.6
Initial X dropoff for ALIGN: 25.0 bits
Y. Wolf's SCOP PSSM
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= sp|Q99715|CA1C_HUMAN COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR -
Homo sapiens (Human).
(3063 letters)
Searching.................................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
gi|2582830 [161..353] Integrin A (or I) domain 177 3e-45
gi|420193 [185..357] Integrin A (or I) domain 161 1e-40
gi|2645090 [1..155] Integrin A (or I) domain 149 7e-37
gi|322088 [20..469] Periplasmic binding protein-like II 31 0.27
gi|1072178 [17..364] Phosphoglycerate mutase-like 30 0.39
gi|128081 [13..98] Neurophysin II 30 0.61
gi|120277 [2..148] Flavodoxin-like 30 0.72
gi|951110 [5..279] ConA-like lectins/glucanases 28 2.0
gi|1055187 [23..334] Phosphoglycerate mutase-like 28 2.1
gi|1001472 [191..704] N-terminal nucleophile aminohydrolases... 28 2.4
gi|549660 [99..278] 7-bladed beta-propeller 28 2.5
gi|1723074 [152..573] Periplasmic binding protein-like II 28 3.1
gi|442637 [1..263] Trypsin-like serine proteases 28 3.5
gi|2305210 [39..399] Serpins 27 3.5
gi|1181604 [175..454] 7-bladed beta-propeller 27 4.0
gi|2497794 [4..293] Creatinase/methionine aminopeptidase 27 4.1
gi|227854 [61..330] Periplasmic binding protein-like I 27 4.2
gi|1652862 [45..566] Periplasmic binding protein-like II 27 5.1
gi|1044824 [27..332] Phosphoglycerate mutase-like 27 5.8
gi|2506629 [5..112] Flavodoxin-like 26 6.1
gi|1170097 [1..85] Thioredoxin-like 26 6.2
gi|2494172 [22..295] DNase I-like 26 6.2
gi|452523 [41..225] 7-bladed beta-propeller 27 6.5
gi|2337942 [43..470] Periplasmic binding protein-like II 26 7.4
gi|482247 [22..143] TBP-like 26 7.5
gi|1420859 [36..611] Periplasmic binding protein-like II 26 9.0
gi|2494764 [404..525] GMP synthetase, the C-terminal, dimeri... 26 9.5
gi|1765998 [434..643] ADP-ribosylation 26 9.8
>gi|2582830 [161..353] Integrin A (or I) domain
Length = 193
Score = 177 bits (445), Expect = 3e-45
Identities = 62/192 (32%), Positives = 62/192 (32%), Gaps = 15/192 (7%)
Query: 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQ 199
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 200 RDELLAAIKKIPYKGGN-TMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVE 258
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGARRGVQKVMVIVTDGESHDNYR 119
Query: 259 I--PARELRNVGVEVFSLGI----------KAADAKELKQIASTPSLNHVFNVANFDAIV 306
Sbjct: 120 LQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELALV 179
Query: 307 DIQNEIISQVCS 318
Sbjct: 180 TIVEALGERIFA 191
Score = 169 bits (426), Expect = 5e-43
Identities = 60/191 (31%), Positives = 60/191 (31%), Gaps = 15/191 (7%)
Query: 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTK 499
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 500 VEDIIEAINTFPYRGGS-TNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDA-- 556
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGARRGVQKVMVIVTDGESHDNYR 119
Query: 557 FRDPAIKLRNSDVEIFAVGVKD----------AVRSELEAIASPPAETHVFTVEDFDAFQ 606
Sbjct: 120 LQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELALV 179
Query: 607 RISFELTQSIC 617
Sbjct: 180 TIVEALGERIF 190
Score = 166 bits (418), Expect = 4e-42
Identities = 56/191 (29%), Positives = 56/191 (29%), Gaps = 15/191 (7%)
Query: 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRD 1258
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 1259 KKSLLQAVANLPYKGGN-TLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD--D 1315
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGARRGVQKVMVIVTDGESHDNYR 119
Query: 1316 VEAPSKKLKDEGVELFAIGIKN----------ADEVELKMIATDPDDTHDYNVADFESLS 1365
Sbjct: 120 LQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELALV 179
Query: 1366 RIVDDLTINLC 1376
Sbjct: 180 TIVEALGERIF 190
Score = 150 bits (376), Expect = 3e-37
Identities = 60/192 (31%), Positives = 60/192 (31%), Gaps = 16/192 (8%)
Query: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN 2382
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMD-IGPQQTQVGIVQYGQTVVHEFYLNTYS 58
Query: 2383 DKALALGALQNIRYRGGN-TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDE- 2440
Sbjct: 59 TTEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGARRGVQKVMVIVTDGESHDNY 118
Query: 2441 -VKKAALVIQQSGFSVFVVGVAD----------VDYNELANIASKPSERHVFIVDDFESF 2489
Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELAL 178
Query: 2490 EKIEDNLITFVC 2501
Sbjct: 179 VTIVEALGERIF 190
>gi|420193 [185..357] Integrin A (or I) domain
Length = 173
Score = 161 bits (405), Expect = 1e-40
Identities = 42/172 (24%), Positives = 42/172 (24%), Gaps = 7/172 (4%)
Query: 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEIS-----PNRVQISLVQYSRDPHTEFTL 494
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 495 KKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSK-GSRSNVPKVMILITDGKS 553
Sbjct: 61 PLTYNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGVT 120
Query: 554 -SDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVEDFDA 604
Sbjct: 121 GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDS 172
Score = 155 bits (390), Expect = 8e-39
Identities = 36/173 (20%), Positives = 36/173 (20%), Gaps = 7/173 (4%)
Query: 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIG-----PKRVQIALAQYSGDPRTEWQL 1253
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 1254 NAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNF-RTQAGMRPRARKIGVLITDGKS 1312
Sbjct: 61 PLTYNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGVT 120
Query: 1313 -QDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHDYNVADFESL 1364
Sbjct: 121 GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173
Score = 144 bits (360), Expect = 2e-35
Identities = 35/172 (20%), Positives = 35/172 (20%), Gaps = 7/172 (4%)
Query: 140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIG-----EEKTRVGVVQYSSDTRTEFNL 194
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 195 NQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTES-AGARVGFPKVAIIITDGKS 253
Sbjct: 61 PLTYNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGVT 120
Query: 254 -QDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVANFDA 304
Sbjct: 121 GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDS 172
Score = 138 bits (345), Expect = 2e-33
Identities = 36/172 (20%), Positives = 36/172 (20%), Gaps = 6/172 (3%)
Query: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDE----ISPAGIQVSFVQYSDEVKSEFKL 2378
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 2379 NTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTW-ESGMRKNVPKVLVVVTDGRS 2437
Sbjct: 61 PLTYNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGVT 120
Query: 2438 -QDEVKKAALVIQQSGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFES 2488
Sbjct: 121 GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDS 172
>gi|2645090 [1..155] Integrin A (or I) domain
Length = 155
Score = 149 bits (373), Expect = 7e-37
Identities = 48/156 (30%), Positives = 48/156 (30%), Gaps = 8/156 (5%)
Query: 1200 IVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDK 1259
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 1260 KSLLQAVANLPYKGGN-TLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD---- 1314
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAMEA-FSEKNGGRADATKALVLLADGQNSFIEGS 119
Query: 1315 -DVEAPSKKLKDEGVELFAIGI-KNADEVELKMIAT 1348
Sbjct: 120 QDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
Score = 143 bits (358), Expect = 4e-35
Identities = 44/156 (28%), Positives = 44/156 (28%), Gaps = 8/156 (5%)
Query: 141 LVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQR 200
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 201 DELLAAIKKIPYKGGN-TMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQD---- 255
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALER-AMEAFSEKNGGRADATKALVLLADGQNSFIEGS 119
Query: 256 -EVEIPARELRNVGVEVFSLGI-KAADAKELKQIAS 289
Sbjct: 120 QDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
Score = 141 bits (353), Expect = 1e-34
Identities = 39/156 (25%), Positives = 39/156 (25%), Gaps = 8/156 (5%)
Query: 441 IVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKV 500
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 501 EDIIEAINTFPYRGGS-TNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSD---- 555
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGRADATKALVLLADGQNSFIEGS 119
Query: 556 -AFRDPAIKLRNSDVEIFAVGV-KDAVRSELEAIAS 589
Sbjct: 120 QDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
Score = 128 bits (319), Expect = 2e-30
Identities = 40/157 (25%), Positives = 40/157 (25%), Gaps = 9/157 (5%)
Query: 2324 IVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYND 2383
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFD-VDNQLTRIGIIRFDSDAEIIIQLSDHKT 59
Query: 2384 KALALGALQNIRYRGGN-TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQD--- 2439
Sbjct: 60 LKDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGRADATKALVLLADGQNSFIEG 118
Query: 2440 --EVKKAALVIQQSGFSVFVVGVA-DVDYNELANIAS 2473
Sbjct: 119 SQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
>gi|322088 [20..469] Periplasmic binding protein-like II
Length = 450
Score = 31.1 bits (70), Expect = 0.27
Identities = 29/212 (13%), Positives = 29/212 (13%), Gaps = 34/212 (16%)
Query: 1664 TEVTSEGFRGTWDHGASDVSLYRITWGP-FGSSDKMETILNG------------DENTLV 1710
Sbjct: 95 SDLTAEDFEYSWQRMVDPKTASEYAYLATESHVKNAEDINSGKNPDLDSLGVKADGNKVI 154
Query: 1711 FENLNPN-------TIYEVSITAIYADESESDDLIGSERTLPILTTQAPKSGPRNLQVYN 1763
Sbjct: 155 FTLTVPAPQFKSLLSFSNFVPQKESFVKDAGKD-YGTTSEKQIYS------GPYIVKDWN 207
Query: 1764 ATSNSLTVK-----WDPASGRVQK--YRITYQPSTGEGNEQTTTIGGRQNSVVLQKLKPD 1816
Sbjct: 208 GTSGTFKLVKNKNYWDAKNVKTETVNVQTVKKPDTAVQMYKQGKLDFANISGTSAIYNAN 267
Query: 1817 TPYTITVSSLYPDGEGGRMTGRGKTKPLNTVR 1848
Sbjct: 268 KKHKDVVPVLEATTAYIVYNQTGAIEGLNSLK 299
>gi|1072178 [17..364] Phosphoglycerate mutase-like
Length = 348
Score = 30.4 bits (68), Expect = 0.39
Identities = 18/97 (18%), Positives = 18/97 (18%), Gaps = 14/97 (14%)
Query: 1870 NPRQYKLFYAPAAGGPEELVPIPGNTNYAI---LRNLQPD---TSYTVTVVPVYTEGDGG 1923
Sbjct: 23 PGDDLNNVDYQQIAWPGELTKRGILEEFQLGQRLRKIYGEHFGDTYQPRDFHVYT-GKDN 81
Query: 1924 RTSDTGRTLMRGL--ARNVQVYNPTPNRLGVRWDPAP 1958
Sbjct: 82 RTSASAQAMFAGFLPPNEDQTWNYELK-----WQPVA 113
>gi|128081 [13..98] Neurophysin II
Length = 86
Score = 30.1 bits (66), Expect = 0.61
Identities = 5/40 (12%), Positives = 5/40 (12%)
Query: 2710 CSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPP 2749
Sbjct: 45 QEENYLPSPCQSGQKPCGSGGRCAANGVCCNDESCVIEPE 84
Score = 29.7 bits (65), Expect = 0.64
Identities = 9/55 (16%), Positives = 9/55 (16%), Gaps = 8/55 (14%)
Query: 2710 CSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPR 2764
Sbjct: 13 CGPGGQG--RCF------GPSICCADALGCFVGTAEALRCQEENYLPSPCQSGQK 59
>gi|120277 [2..148] Flavodoxin-like
Length = 147
Score = 29.5 bits (66), Expect = 0.72
Identities = 12/47 (25%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 2426 PKVLVVV--TDGRSQDEVKKAALVIQQSGFSVFVVGVADVDYNELAN 2470
Sbjct: 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFE 47
>gi|951110 [5..279] ConA-like lectins/glucanases
Length = 275
Score = 28.3 bits (63), Expect = 2.0
Identities = 6/29 (20%), Positives = 6/29 (20%)
Query: 1763 NATSNSLTVKWDPASGRVQKYRITYQPST 1791
Sbjct: 176 NSIKSAATTKWERRNGQTLNVLVSYDANS 204
>gi|1055187 [23..334] Phosphoglycerate mutase-like
Length = 312
Score = 28.0 bits (62), Expect = 2.1
Identities = 6/44 (13%), Positives = 6/44 (13%), Gaps = 1/44 (2%)
Query: 1893 GNTNYAILRNLQPDTSYTVTVVPVYTEGDGGRTSDTGRTLMRGL 1936
Sbjct: 9 GKVLRDRYVNSFVDARMLSSQLLFRS-SPVERCLMTLQTVGNTM 51
>gi|1001472 [191..704] N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Length = 514
Score = 28.1 bits (62), Expect = 2.4
Identities = 12/65 (18%), Positives = 12/65 (18%), Gaps = 4/65 (6%)
Query: 834 WSGAPGKVKQYLVTYTPVAGGETQEVTVRGDTTNTVLQGL---KEGTQYALSVTALYASG 890
Sbjct: 89 WDGEVKSFDRRNNQVK-ILQGNGSYQTLQWEALESVTGIVVAQRGGNAYTLKIPGLDRSG 147
Query: 891 AGDAL 895
Sbjct: 148 AISQF 152
>gi|549660 [99..278] 7-bladed beta-propeller
Length = 180
Score = 27.8 bits (61), Expect = 2.5
Identities = 7/49 (14%), Positives = 7/49 (14%), Gaps = 4/49 (8%)
Query: 1119 VTFHPTGDDRRLGELVVGPYDNTVVLEELRAGTTYKVNVFGMFDGGESS 1167
Sbjct: 61 IAYDPSGLVF----ALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQ 105
>gi|1723074 [152..573] Periplasmic binding protein-like II
Length = 422
Score = 27.6 bits (61), Expect = 3.1
Identities = 15/138 (10%), Positives = 15/138 (10%), Gaps = 21/138 (15%)
Query: 1664 TEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMETILNGDENTLVFE------NLNPN 1717
Sbjct: 17 TPITWRDIASQIHAISGADKAFEI-ASSSGAERVASVTRGVDDRQAVVTFAKPYAEWRGM 75
Query: 1718 TIYEVSITAIYADESESDDLIGSERTLPILTTQAPKSGPRNLQVYNATSNSLTVK----- 1772
Sbjct: 76 FAGNGMLLPASMTATPEAFNKGQLDGPGPSA------GPFVVSALDRTAQRIVLTRNPRW 129
Query: 1773 WDPASGRVQKYRITYQPS 1790
Sbjct: 130 WG---ARPRLDSITYLVL 144
>gi|442637 [1..263] Trypsin-like serine proteases
Length = 263
Score = 27.6 bits (60), Expect = 3.5
Identities = 15/41 (36%), Positives = 15/41 (36%)
Query: 1486 GPTTMHVQWQPVGGATGYILSYKPVKDTEPTRPKEVRLGPT 1526
Sbjct: 174 GTTHLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGPS 214
>gi|2305210 [39..399] Serpins
Length = 361
Score = 27.2 bits (60), Expect = 3.5
Identities = 14/139 (10%), Positives = 14/139 (10%), Gaps = 19/139 (13%)
Query: 296 VFNVANFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNW- 354
Sbjct: 113 LTQI-NFASPLQVKSIREIFIKWIKKSMNYGARNIASI---TSTQSLNLFNGIHFTDDWM 168
Query: 355 ---NPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMT 411
Sbjct: 169 YEFLPLNHILPFYS---------PRLRVTDM-PMMERTAKFPYYENQHMQAVSLPFKDSE 218
Query: 412 SSEPISIMEKTQPMKVQVE 430
Sbjct: 219 MQMLIILPKKTFDLA-KFE 236
>gi|1181604 [175..454] 7-bladed beta-propeller
Length = 280
Score = 27.1 bits (59), Expect = 4.0
Identities = 14/154 (9%), Positives = 14/154 (9%), Gaps = 19/154 (12%)
Query: 1117 YKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAGTTYKVNVFGMFDGGES------SPLV 1170
Sbjct: 86 NSVCFADESGHL----IYSGSDDNLCKVWDRRCFNAKGKPAGILMGHLEGITFIDSRGDG 141
Query: 1171 GQEMTTLSDTTVMPI-LSSGMECLTRAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVF 1229
Sbjct: 142 RYFISNGKDQTIKLWDIRKMSSNAGGTIQSRNSEWDYRWMEYPQEARDLK--------HP 193
Query: 1230 DIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLL 1263
Sbjct: 194 SDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIY 227
>gi|2497794 [4..293] Creatinase/methionine aminopeptidase
Length = 290
Score = 27.2 bits (60), Expect = 4.1
Identities = 8/50 (16%), Positives = 8/50 (16%), Gaps = 2/50 (4%)
Query: 1045 PTVTSTVLKRLQPQTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLK 1094
Sbjct: 167 PNVYERTNQYIDVGDLV--AIEPFATDGFGMVKDGNLGNIYKFLAKRPIR 214
>gi|227854 [61..330] Periplasmic binding protein-like I
Length = 270
Score = 27.3 bits (60), Expect = 4.2
Identities = 14/144 (9%), Positives = 14/144 (9%), Gaps = 28/144 (19%)
Query: 1301 RKIGVLITDGKSQ---DDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHDYN 1357
Sbjct: 2 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCI----EHLLQRQ 57
Query: 1358 VADF---------ESLSRIVDDLTINLCNSVKGPGDLEAPSNLV------------ISER 1396
Sbjct: 58 VDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF 117
Query: 1397 THRSFRVSWTPPSDSVDRYKVEYY 1420
Sbjct: 118 PAETVLYLGALPELSVSFLREQGF 141
>gi|1652862 [45..566] Periplasmic binding protein-like II
Length = 522
Score = 26.9 bits (59), Expect = 5.1
Identities = 22/140 (15%), Positives = 22/140 (15%), Gaps = 27/140 (19%)
Query: 1664 TEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMETILNGDENTLVFENLNPNTIYEVS 1723
Sbjct: 81 QPFSAEDVAFTYKF-LSDPKTGATSTGTYEAIAKVEAL---DKNTVKIT-FKEPNPAWFL 135
Query: 1724 ITA----------IYADESESDDLIGSERTLPILTTQAPKSGPRNLQVYNATSNSLTVK- 1772
Sbjct: 136 PFVGSEGMILPQHIYKDFVGEKARQAPANLLPIGT------GPYRVTSFKPGDVVLYEVN 189
Query: 1773 ---WDPASGRVQKYRITYQP 1789
Sbjct: 190 PHYRDRKNIGFQQ--VEIKG 207
>gi|1044824 [27..332] Phosphoglycerate mutase-like
Length = 306
Score = 26.8 bits (59), Expect = 5.8
Identities = 4/42 (9%), Positives = 4/42 (9%), Gaps = 1/42 (2%)
Query: 1906 DTSYTVTVVPVYTEGDGGRTSDTGRTLMRGLARNVQVYNPTP 1947
Sbjct: 59 DGNLKPRQMYWRS-VNKNRCLSSASTVGAAMFEDPSRHLYVP 99
>gi|2506629 [5..112] Flavodoxin-like
Length = 108
Score = 26.4 bits (58), Expect = 6.1
Identities = 10/107 (9%), Positives = 10/107 (9%), Gaps = 11/107 (10%)
Query: 2427 KVLVVV----TDGRSQDEVKKAALVIQQSGFSVFVVGVADVDYNEL--ANIASKPSERHV 2480
Sbjct: 1 RIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWKNMDK 60
Query: 2481 FIVDDFES-FEKIED-NLITFVCETATSSCPLI---YLDGYTSPGFK 2522
Sbjct: 61 RYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLA 107
>gi|1170097 [1..85] Thioredoxin-like
Length = 85
Score = 26.4 bits (58), Expect = 6.2
Identities = 12/61 (19%), Positives = 12/61 (19%)
Query: 192 FNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDG 251
Sbjct: 8 WDIRGLAHAIRLLLEYTDSSYVEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGA 67
Query: 252 K 252
Sbjct: 68 H 68
>gi|2494172 [22..295] DNase I-like
Length = 274
Score = 26.5 bits (58), Expect = 6.2
Identities = 13/55 (23%), Positives = 13/55 (23%)
Query: 1608 KEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLK 1662
Sbjct: 87 DAVSVVDTYLYPDPEDVFSREPFVVKFSAPGTGERAPPLPSRRALTPPPLPAAAQ 141
>gi|452523 [41..225] 7-bladed beta-propeller
Length = 185
Score = 26.6 bits (58), Expect = 6.5
Identities = 10/59 (16%), Positives = 10/59 (16%), Gaps = 4/59 (6%)
Query: 2217 WDTFCVKWSPHR---AATSYRLKLSPADGTRGQEI-TVRGSETSHCFTGLSPDTDYGVT 2271
Sbjct: 10 WETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLAL 68
>gi|2337942 [43..470] Periplasmic binding protein-like II
Length = 428
Score = 26.5 bits (58), Expect = 7.4
Identities = 26/131 (19%), Positives = 26/131 (19%), Gaps = 14/131 (10%)
Query: 432 SRGVDIKA-DIVF----LVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS-LVQYS 485
Sbjct: 58 SDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSHARALDARRIEMTLSHPQSTFVNVLGSLG 117
Query: 486 RDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVM 545
Sbjct: 118 IVPASRYDEKTFAR-----EPIGAGPYRLVSFQPGQQLIVEANPWY---AGKKNDFNRLV 169
Query: 546 ILITDGKSSDA 556
Sbjct: 170 FVFLDEDNAYA 180
>gi|482247 [22..143] TBP-like
Length = 122
Score = 26.1 bits (57), Expect = 7.5
Identities = 13/47 (27%), Positives = 13/47 (27%), Gaps = 12/47 (25%)
Query: 2421 MRKNVPKVL--------VVVTDGRSQDEVKKA----ALVIQQSGFSV 2455
Sbjct: 69 MRLRDPKTTALIFASGKMVCTGAKTEEDSNRAARKYAKIIQKIGFPV 115
>gi|1420859 [36..611] Periplasmic binding protein-like II
Length = 576
Score = 26.1 bits (57), Expect = 9.0
Identities = 21/148 (14%), Positives = 21/148 (14%), Gaps = 29/148 (19%)
Query: 1664 TEVTSEGFRGTWDHGASDVSLYRITWGPFGSSDKMETILNG--DENTLVFENLNPNTIYE 1721
Sbjct: 80 APVTAEDFVTGLKHAVDDKSDA--LYVVEDSIKNLKAYQNGEVDFKEVGVKALDDKTV-Q 136
Query: 1722 VSITAIYADESESDDLIGSERTLPILTTQAPK---------------SGPRNLQVYNATS 1766
Sbjct: 137 YTLNKPESYW---NSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFT-SK 192
Query: 1767 NSLTVK-----WDPASGRVQKYRITYQP 1789
Sbjct: 193 SSMEFHKNENYWDAKNVGIESVKLTYSD 220
>gi|2494764 [404..525] GMP synthetase, the C-terminal, dimerisation domain
Length = 122
Score = 26.0 bits (57), Expect = 9.5
Identities = 14/63 (22%), Positives = 14/63 (22%), Gaps = 3/63 (4%)
Query: 570 EIFAVGVKDAVRSELEAIASPPAETHVFTVEDFDAFQRISFELTQSICLRIEQELAAIKK 629
Sbjct: 50 DVRSVGVQGDGRTYGHPIVLRPVSSEDAMTAD---WTRVPYEVLERISTRITNEVAEVNR 106
Query: 630 KAY 632
Sbjct: 107 VVL 109
>gi|1765998 [434..643] ADP-ribosylation
Length = 210
Score = 25.9 bits (56), Expect = 9.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 783 IPDTKYEVSVIPEYFSGPGTP 803
Sbjct: 188 IPDKEQAISALPDYASQPGKP 208
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 1187
Number of sequences better than 10.0: 28
Number of calls to ALIGN: 38
Length of query: 3063
Total length of test sequences: 256703
Effective length of test sequences: 201489.0
Effective search space size: 607713701.3
Initial X dropoff for ALIGN: 25.0 bits