analysis of sequence from tem27
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
>gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
MAPGWAGVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDR
NNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDL
SENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTL
RLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISC
PSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDA
FQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK
GLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSED
YRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKKLPNLR
KINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSS
VRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIP
IQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRE
LSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPE
GSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVD
INIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGF
SCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAK
CIPLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLLQT
SPCDQYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDK
DNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTPK
SLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLGGFHGCIHEVRINNELQDFKALPPQSLGVSP
GCKSCTVCKHGLCRSVEKDSVVCECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMCKCAEGYGGD
LCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQENPCLGQVVREVIRRQKGYASCATA
SKVPIMECRGGCGPQCCQPTRSKRRKYVFQCTDGSSFVEEVERHLECGCLACS
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
sec.str. with predator
> gi|4049589|dbj|BAA35186.1|
. . . . .
1 MAPGWAGVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGL 50
______HHHHHHHHHHHHHHHHHHHH________________________
. . . . .
51 GLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVI 100
EEEEE_________________EEEEE_________EEEEE____EEEEE
. . . . .
101 ERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPR 150
E__HHHHHHHHHHHHHH______HHHHHHH_____EEE____________
. . . . .
151 KAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTS 200
___EEEEEEEE______EEEE____HHHHHHHHEEEE______EEEEEEE
. . . . .
201 FNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRG 250
______HHHHHHH_____HHHHHHHHHHHHHHHHHHHHHHHH____EEE_
. . . . .
251 FNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLME 300
________EEEE___________________________EEE_____EEE
. . . . .
301 IPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDA 350
_________EEEEHHHHHHH_____HHHHHHHHHEEE_____________
. . . . .
351 FQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQ 400
_HHHHHHHHEEE____HHHHHHHH_____HHHHHHHH____EEEEEE___
. . . . .
401 DLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLAD 450
__EEEE_EEE____EEEEE____HHHHHHHHHHHH_____HHHHHHHHHH
. . . . .
451 YLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECF 500
HH______________HHHHHHHHHHHHH__EEE_____________HHH
. . . . .
501 MDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEAT 550
HHH__________EEEE____EEEEE_____EEE________EEEEEEE_
. . . . .
551 GIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRV 600
__EEE____EEEE____HHHHHHH_____HHHHHHHH_____EEE_____
. . . . .
601 FRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFT 650
EEEE__HHHHHHHH_EEEEE_________EEEEEEE____EEE_____EE
. . . . .
651 TLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIP 700
EEEEEE____________HHHHHHHHHHHHEEEE_________EEEEE__
. . . . .
701 IQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGM 750
_EEEEEEE________________________EEEEEE____________
. . . . .
751 PKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSH 800
______EEE_______HHHHHHHHHHHHHH______EEEEE_______HH
. . . . .
801 LSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLS 850
HHHHHHH________EEEE_____EEEEE________________EEE_E
. . . . .
851 HLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPT 900
EEE_________HHHHHHHHHHHH______EEE______HHHHHHH____
. . . . .
901 HRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGK 950
___________EEEE____________________EEEEEE_________
. . . . .
951 DCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDC 1000
______EEEE_________EEEE__________________EEE______
. . . . .
1001 EDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAK 1050
________________EEEEE_________HHHHHHH___________EE
. . . . .
1051 CIPLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTC 1100
E_________________EEEE______EEEE_____EEEEE________
. . . . .
1101 PQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFA 1150
_______________EEEE_____________EEEEE_____________
. . . . .
1151 GPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGD 1200
___EEEEEEEEE_____HHHHHHHH________EEEE______EEEEE__
. . . . .
1201 NDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTL 1250
__HHHHHHHH___EEEEE_______EEEEEEE______EEEEEEEE_HHH
. . . . .
1251 NLVVDKGTPKSLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLG 1300
HH___________________________________HHHHHHH______
. . . . .
1301 GFHGCIHEVRINNELQDFKALPPQSLGVSPGCKSCTVCKHGLCRSVEKDS 1350
____EEEEEE___HHHHH________________EEEE____________
. . . . .
1351 VVCECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMCKCAEGYGGD 1400
EEEE__________________________EEEEE___EEEE________
. . . . .
1401 LCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQENPCL 1450
_____________EEEE____EEE_______EEE________________
. . . . .
1451 GQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQ 1500
_HHHHHHHHHHH___EEEE____EEEE_________________EEEEEE
. .
1501 CTDGSSFVEEVERHLECGCLACS 1523
______EEEHHHHHHHHEEE___
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
method : 1
alpha-contents : 20.6 %
beta-contents : 23.4 %
coil-contents : 56.1 %
class : mixed
method : 2
alpha-contents : 7.6 %
beta-contents : 20.6 %
coil-contents : 71.8 %
class : beta
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
GPI: learning from metazoa
-20.30 -0.88 -0.15 0.00 -4.00 -4.00 0.00 0.00 -3.43 -6.29 -1.30 -12.00 -12.00 0.00 -12.00 0.00 -76.35
-15.29 -5.43 -1.88 -0.94 -4.00 -4.00 -8.00 0.00 -1.37 -4.99 -1.30 -12.00 0.00 0.00 -12.00 0.00 -71.21
ID: gi|4049589|dbj|BAA35186.1| AC: xxx Len: 1470 1:I 1455 Sc: -71.21 Pv: 5.919797e-01 NO_GPI_SITE
GPI: learning from protozoa
-31.62 -0.93 -0.25 0.00 -4.00 -4.00 0.00 0.00 -1.72 -5.47 -5.56 -12.00 -12.00 0.00 -12.00 0.00 -89.54
-31.05 -1.69 -0.74 -2.76 -4.00 0.00 0.00 0.00 -0.90 -6.28 -5.56 -12.00 -12.00 0.00 -12.00 0.00 -88.99
ID: gi|4049589|dbj|BAA35186.1| AC: xxx Len: 1470 1:I 1451 Sc: -88.99 Pv: 6.769322e-01 NO_GPI_SITE
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
# SignalP euk predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|4049589| 0.652 34 Y 0.680 34 Y 0.970 13 Y 0.831 Y
# SignalP gram- predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|4049589| 0.772 34 Y 0.670 34 Y 0.967 19 Y 0.677 Y
# SignalP gram+ predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|4049589| 0.757 34 Y 0.534 34 Y 0.995 17 Y 0.822 Y
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
low complexity regions: SEG 12 2.2 2.5
>gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
1-5 MAPGW
agvgaavrarlalalalasvlsgppa 6-31
32-373 VACPTKCTCSAASVDCHGLGLRAVPRGIPR
NAERLDLDRNNITRITKMDFAGLKNLRVLH
LEDNQVSVIERGAFQDLKQLERLRLNKNKL
QVLPELLFQSTPKLTRLDLSENQIQGIPRK
AFRGITDVKNLQLDNNHISCIEDGAFRALR
DLEILTLNNNNISRILVTSFNHMPKIRTLR
LHSNHLYCDCHLAWLSDWLRQRRTVGQFTL
CMAPVHLRGFNVADVQKKEYVCPAPHSEPP
SCNANSISCPSPCTCSNNIVDCRGKGLMEI
PANLPEGIVEIRLEQNSIKAIPAGAFTQYK
KLKRIDISKNQISDIAPDAFQGLKSLTSLV
LYGNKITEIAKG
lfdglvslqllll 374-386
387-992 NANKINCLRVNTFQDLQNLNLLSLYDNKLQ
TISKGLFAPLQSIQTLHLAQNPFVCDCHLK
WLADYLQDNPIETSGARCSSPRRLANKRIS
QIKSKKFRCSGSEDYRSRFSSECFMDLVCP
EKCRCEGTIVDCSNQKLVRIPSHLPEYVTD
LRLNDNEVSVLEATGIFKKLPNLRKINLSN
NKIKEVREGAFDGAASVQELMLTGNQLETV
HGRVFRGLSGLKTLMLRSNLIGCVSNDTFA
GLSSVRLLSLYDNRITTITPGAFTTLVSLS
TINLLSNPFNCNCHLAWLGKWLRKRRIVSG
NPRCQKPFFLKEIPIQDVAIQDFTCDGNEE
SSCQLSPRCPEQCTCMETVVRCSNKGLRAL
PRGMPKDVTELYLEGNHLTAVPRELSALRH
LTLIDLSNNSISMLTNYTFSNMSHLSTLIL
SYNRLRCIPVHAFNGLRSLRVLTLHGNDIS
SVPEGSFNDLTSLSHLALGTNPLHCDCSLR
WLSEWVKAGYKEPGIARCSSPEPMADRLLL
TTPTHRFQCKGPVDINIVAKCNACLSSPCK
NNGTCTQDPVELYRCACPYSYKGKDCTVPI
NTCIQNPCQHGGTCHLSDSHKDGFSCSCPL
GFEGQR
ceinpddcedndcenn 993-1008
1009-1240 ATCVDGINNYVCICPPNYTGELCDEVIDHC
VPELNLCQHEAKCIPLDKGFSCECVPGYSG
KLCETDNDDCVAHKCRHGAQCVDTINGYTC
TCPQGFSGPFCEHPPPMVLLQTSPCDQYEC
QNGAQCIVVQQEPTCRCPPGFAGPRCEKLI
TVNFVGKDSYVELASAKVRPQANISLQVAT
DKDNGILLYKGDNDPLALELYQGHVRLVYD
SLSSPPTTVYSVETVNDGQFHS
velvtlnqtlnlvv 1241-1254
1255-1479 DKGTPKSLGKLQKQPAVGINSPLYLGGIPT
STGLSALRQGTDRPLGGFHGCIHEVRINNE
LQDFKALPPQSLGVSPGCKSCTVCKHGLCR
SVEKDSVVCECRPGWTGPLCDQEARDPCLG
HRCHHGKCVATGTSYMCKCAEGYGGDLCDN
KNDSANACSAFKCHHGQCHISDQGEPYCLC
QPGFSGEHCQQENPCLGQVVREVIRRQKGY
ASCATASKVPIMECR
ggcgpqccqp 1480-1489
1490-1523 TRSKRRKYVFQCTDGSSFVEEVERHLECGC
LACS
low complexity regions: SEG 25 3.0 3.3
>gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
1-1 M
apgwagvgaavrarlalalalasvlsgppa 2-47
vacptkctcsaasvdc
48-104 HGLGLRAVPRGIPRNAERLDLDRNNITRIT
KMDFAGLKNLRVLHLEDNQVSVIERGA
fqdlkqlerlrlnknklqvlpellfqstpk 105-141
ltrldls
142-262 ENQIQGIPRKAFRGITDVKNLQLDNNHISC
IEDGAFRALRDLEILTLNNNNISRILVTSF
NHMPKIRTLRLHSNHLYCDCHLAWLSDWLR
QRRTVGQFTLCMAPVHLRGFNVADVQKKEY
V
cpaphseppscnansiscpspctcsnn 263-289
290-380 IVDCRGKGLMEIPANLPEGIVEIRLEQNSI
KAIPAGAFTQYKKLKRIDISKNQISDIAPD
AFQGLKSLTSLVLYGNKITEIAKGLFDGLV
S
lqllllnankinclrvntfqdlqnlnllsl 381-410
411-770 YDNKLQTISKGLFAPLQSIQTLHLAQNPFV
CDCHLKWLADYLQDNPIETSGARCSSPRRL
ANKRISQIKSKKFRCSGSEDYRSRFSSECF
MDLVCPEKCRCEGTIVDCSNQKLVRIPSHL
PEYVTDLRLNDNEVSVLEATGIFKKLPNLR
KINLSNNKIKEVREGAFDGAASVQELMLTG
NQLETVHGRVFRGLSGLKTLMLRSNLIGCV
SNDTFAGLSSVRLLSLYDNRITTITPGAFT
TLVSLSTINLLSNPFNCNCHLAWLGKWLRK
RRIVSGNPRCQKPFFLKEIPIQDVAIQDFT
CDGNEESSCQLSPRCPEQCTCMETVVRCSN
KGLRALPRGMPKDVTELYLEGNHLTAVPRE
lsalrhltlidlsnnsismltnytfsnmsh 771-811
lstlilsynrl
812-992 RCIPVHAFNGLRSLRVLTLHGNDISSVPEG
SFNDLTSLSHLALGTNPLHCDCSLRWLSEW
VKAGYKEPGIARCSSPEPMADRLLLTTPTH
RFQCKGPVDINIVAKCNACLSSPCKNNGTC
TQDPVELYRCACPYSYKGKDCTVPINTCIQ
NPCQHGGTCHLSDSHKDGFSCSCPLGFEGQ
R
ceinpddcedndcennatcvdginnyvcic 993-1028
ppnytg
1029-1523 ELCDEVIDHCVPELNLCQHEAKCIPLDKGF
SCECVPGYSGKLCETDNDDCVAHKCRHGAQ
CVDTINGYTCTCPQGFSGPFCEHPPPMVLL
QTSPCDQYECQNGAQCIVVQQEPTCRCPPG
FAGPRCEKLITVNFVGKDSYVELASAKVRP
QANISLQVATDKDNGILLYKGDNDPLALEL
YQGHVRLVYDSLSSPPTTVYSVETVNDGQF
HSVELVTLNQTLNLVVDKGTPKSLGKLQKQ
PAVGINSPLYLGGIPTSTGLSALRQGTDRP
LGGFHGCIHEVRINNELQDFKALPPQSLGV
SPGCKSCTVCKHGLCRSVEKDSVVCECRPG
WTGPLCDQEARDPCLGHRCHHGKCVATGTS
YMCKCAEGYGGDLCDNKNDSANACSAFKCH
HGQCHISDQGEPYCLCQPGFSGEHCQQENP
CLGQVVREVIRRQKGYASCATASKVPIMEC
RGGCGPQCCQPTRSKRRKYVFQCTDGSSFV
EEVERHLECGCLACS
low complexity regions: SEG 45 3.4 3.75
>gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
1-1 M
apgwagvgaavrarlalalalasvlsgppa 2-66
vacptkctcsaasvdchglglravprgipr
naerl
67-339 DLDRNNITRITKMDFAGLKNLRVLHLEDNQ
VSVIERGAFQDLKQLERLRLNKNKLQVLPE
LLFQSTPKLTRLDLSENQIQGIPRKAFRGI
TDVKNLQLDNNHISCIEDGAFRALRDLEIL
TLNNNNISRILVTSFNHMPKIRTLRLHSNH
LYCDCHLAWLSDWLRQRRTVGQFTLCMAPV
HLRGFNVADVQKKEYVCPAPHSEPPSCNAN
SISCPSPCTCSNNIVDCRGKGLMEIPANLP
EGIVEIRLEQNSIKAIPAGAFTQYKKLKRI
DIS
knqisdiapdafqglksltslvlygnkite 340-439
iakglfdglvslqllllnankinclrvntf
qdlqnlnllslydnklqtiskglfaplqsi
qtlhlaqnpf
440-754 VCDCHLKWLADYLQDNPIETSGARCSSPRR
LANKRISQIKSKKFRCSGSEDYRSRFSSEC
FMDLVCPEKCRCEGTIVDCSNQKLVRIPSH
LPEYVTDLRLNDNEVSVLEATGIFKKLPNL
RKINLSNNKIKEVREGAFDGAASVQELMLT
GNQLETVHGRVFRGLSGLKTLMLRSNLIGC
VSNDTFAGLSSVRLLSLYDNRITTITPGAF
TTLVSLSTINLLSNPFNCNCHLAWLGKWLR
KRRIVSGNPRCQKPFFLKEIPIQDVAIQDF
TCDGNEESSCQLSPRCPEQCTCMETVVRCS
NKGLRALPRGMPKDV
telylegnhltavprelsalrhltlidlsn 755-866
nsismltnytfsnmshlstlilsynrlrci
pvhafnglrslrvltlhgndissvpegsfn
dltslshlalgtnplhcdcslr
867-1523 WLSEWVKAGYKEPGIARCSSPEPMADRLLL
TTPTHRFQCKGPVDINIVAKCNACLSSPCK
NNGTCTQDPVELYRCACPYSYKGKDCTVPI
NTCIQNPCQHGGTCHLSDSHKDGFSCSCPL
GFEGQRCEINPDDCEDNDCENNATCVDGIN
NYVCICPPNYTGELCDEVIDHCVPELNLCQ
HEAKCIPLDKGFSCECVPGYSGKLCETDND
DCVAHKCRHGAQCVDTINGYTCTCPQGFSG
PFCEHPPPMVLLQTSPCDQYECQNGAQCIV
VQQEPTCRCPPGFAGPRCEKLITVNFVGKD
SYVELASAKVRPQANISLQVATDKDNGILL
YKGDNDPLALELYQGHVRLVYDSLSSPPTT
VYSVETVNDGQFHSVELVTLNQTLNLVVDK
GTPKSLGKLQKQPAVGINSPLYLGGIPTST
GLSALRQGTDRPLGGFHGCIHEVRINNELQ
DFKALPPQSLGVSPGCKSCTVCKHGLCRSV
EKDSVVCECRPGWTGPLCDQEARDPCLGHR
CHHGKCVATGTSYMCKCAEGYGGDLCDNKN
DSANACSAFKCHHGQCHISDQGEPYCLCQP
GFSGEHCQQENPCLGQVVREVIRRQKGYAS
CATASKVPIMECRGGCGPQCCQPTRSKRRK
YVFQCTDGSSFVEEVERHLECGCLACS
low complexity regions: XNU
# Score cutoff = 21, Search from offsets 1 to 4
# both members of each repeat flagged
# lambda = 0.347, K = 0.200, H = 0.664
>gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
MAPGWagvgaavrarlalalalaSVLSGPPAVACPTKCTCSAASVDCHGLGLravprgip
rnaerLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNK
LQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRAL
RDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFT
LCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLME
IPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSL
VLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK
GLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKS
KKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLN
DNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRV
FRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINL
LSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQ
LSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRELSALRHLTLI
DLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPE
GSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPT
HRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCI
QNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVC
ICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDNDDCVA
HKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQE
PTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGD
NDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTPK
SLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLGGFHGCIHEVRINNELQDFKA
LPPQSLGVSPGCKSCTVCKHGLCRSVEKDSVVCECRPGWTGPLCDQEARDPCLGHRCHHG
KCVATGTSYMCKCAEGYGGDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSG
EHCQQENPCLGQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQ
CTDGSSFVEEVERHLECGCLACS
1 - 5 MAPGW
6 - 23 agvga avrarlalal ala
24 - 52 SVLSGPP AVACPTKCTC SAASVDCHGL GL
53 - 65 ravprgip rnaer
66 - 1523 LDLDR NNITRITKMD FAGLKNLRVL HLEDNQVSVI ERGAFQDLKQ LERLRLNKNK LQVLP
ELLFQ STPKLTRLDL SENQIQGIPR KAFRGITDVK NLQLDNNHIS CIEDGAFRAL RDLEI
LTLNN NNISRILVTS FNHMPKIRTL RLHSNHLYCD CHLAWLSDWL RQRRTVGQFT LCMAP
VHLRG FNVADVQKKE YVCPAPHSEP PSCNANSISC PSPCTCSNNI VDCRGKGLME IPANL
PEGIV EIRLEQNSIK AIPAGAFTQY KKLKRIDISK NQISDIAPDA FQGLKSLTSL VLYGN
KITEI AKGLFDGLVS LQLLLLNANK INCLRVNTFQ DLQNLNLLSL YDNKLQTISK GLFAP
LQSIQ TLHLAQNPFV CDCHLKWLAD YLQDNPIETS GARCSSPRRL ANKRISQIKS KKFRC
SGSED YRSRFSSECF MDLVCPEKCR CEGTIVDCSN QKLVRIPSHL PEYVTDLRLN DNEVS
VLEAT GIFKKLPNLR KINLSNNKIK EVREGAFDGA ASVQELMLTG NQLETVHGRV FRGLS
GLKTL MLRSNLIGCV SNDTFAGLSS VRLLSLYDNR ITTITPGAFT TLVSLSTINL LSNPF
NCNCH LAWLGKWLRK RRIVSGNPRC QKPFFLKEIP IQDVAIQDFT CDGNEESSCQ LSPRC
PEQCT CMETVVRCSN KGLRALPRGM PKDVTELYLE GNHLTAVPRE LSALRHLTLI DLSNN
SISML TNYTFSNMSH LSTLILSYNR LRCIPVHAFN GLRSLRVLTL HGNDISSVPE GSFND
LTSLS HLALGTNPLH CDCSLRWLSE WVKAGYKEPG IARCSSPEPM ADRLLLTTPT HRFQC
KGPVD INIVAKCNAC LSSPCKNNGT CTQDPVELYR CACPYSYKGK DCTVPINTCI QNPCQ
HGGTC HLSDSHKDGF SCSCPLGFEG QRCEINPDDC EDNDCENNAT CVDGINNYVC ICPPN
YTGEL CDEVIDHCVP ELNLCQHEAK CIPLDKGFSC ECVPGYSGKL CETDNDDCVA HKCRH
GAQCV DTINGYTCTC PQGFSGPFCE HPPPMVLLQT SPCDQYECQN GAQCIVVQQE PTCRC
PPGFA GPRCEKLITV NFVGKDSYVE LASAKVRPQA NISLQVATDK DNGILLYKGD NDPLA
LELYQ GHVRLVYDSL SSPPTTVYSV ETVNDGQFHS VELVTLNQTL NLVVDKGTPK SLGKL
QKQPA VGINSPLYLG GIPTSTGLSA LRQGTDRPLG GFHGCIHEVR INNELQDFKA LPPQS
LGVSP GCKSCTVCKH GLCRSVEKDS VVCECRPGWT GPLCDQEARD PCLGHRCHHG KCVAT
GTSYM CKCAEGYGGD LCDNKNDSAN ACSAFKCHHG QCHISDQGEP YCLCQPGFSG EHCQQ
ENPCL GQVVREVIRR QKGYASCATA SKVPIMECRG GCGPQCCQPT RSKRRKYVFQ CTDGS
SFVEE VERHLECGCL ACS
low complexity regions: DUST
>gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
MAPGWAGVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGLGLRAVPRGIP
RNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNK
LQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRAL
RDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFT
LCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLME
IPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSL
VLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK
GLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKS
KKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLN
DNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRV
FRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINL
LSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQ
LSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRELSALRHLTLI
DLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPE
GSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPT
HRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCI
QNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVC
ICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDNDDCVA
HKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQE
PTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGD
NDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTPK
SLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLGGFHGCIHEVRINNELQDFKA
LPPQSLGVSPGCKSCTVCKHGLCRSVEKDSVVCECRPGWTGPLCDQEARDPCLGHRCHHG
KCVATGTSYMCKCAEGYGGDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSG
EHCQQENPCLGQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQ
CTDGSSFVEEVERHLECGCLACS
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
coiled coil prediction for gi|4049589|dbj|BAA35186.1|
sequence: 1470 amino acids, 0 residue(s) in coiled coil state
. | . | . | . | . | . 60
MAPGWAGVGA AVRARLALAL ALASVLSGPP AVACPTKCTC SAASVDCHGL GLRAVPRGIP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 120
RNAERLDLDR NNITRITKMD FAGLKNLRVL HLEDNQVSVI ERGAFQDLKQ LERLRLNKNK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
1111111111 11111~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~111133999 9999999999 * 14 M'95 -w local
. | . | . | . | . | . 180
LQVLPELLFQ STPKLTRLDL SENQIQGIPR KAFRGITDVK NLQLDNNHIS CIEDGAFRAL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~333 * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
9995~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~11 * 14 M'95 -w local
. | . | . | . | . | . 240
RDLEILTLNN NNISRILVTS FNHMPKIRTL RLHSNHLYCD CHLAWLSDWL RQRRTVGQFT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
3333333333 333333331~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
1111111111 11~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 300
LCMAPVHLRG FNVADVQKKE YVCPAPHSEP PSCNANSISC PSPCTCSNNI VDCRGKGLME
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 360
IPANLPEGIV EIRLEQNSIK AIPAGAFTQY KKLKRIDISK NQISDIAPDA FQGLKSLTSL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 420
VLYGNKITEI AKGLFDGLVS LQLLLLNANK INCLRVNTFQ DLQNLNLLSL YDNKLQTISK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 480
GLFAPLQSIQ TLHLAQNPFV CDCHLKWLAD YLQDNPIETS GARCSSPRRL ANKRISQIKS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 540
KKFRCSGSED YRSRFSSECF MDLVCPEKCR CEGTIVDCSN QKLVRIPSHL PEYVTDLRLN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 600
DNEVSVLEAT GIFKKLPNLR KINLSNNKIK EVREGAFDGA ASVQELMLTG NQLETVHGRV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~3 4444444444 4444~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 660
FRGLSGLKTL MLRSNLIGCV SNDTFAGLSS VRLLSLYDNR ITTITPGAFT TLVSLSTINL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 720
LSNPFNCNCH LAWLGKWLRK RRIVSGNPRC QKPFFLKEIP IQDVAIQDFT CDGNEESSCQ
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 780
LSPRCPEQCT CMETVVRCSN KGLRALPRGM PKDVTELYLE GNHLTAVPRE LSALRHLTLI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 840
DLSNNSISML TNYTFSNMSH LSTLILSYNR LRCIPVHAFN GLRSLRVLTL HGNDISSVPE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 900
GSFNDLTSLS HLALGTNPLH CDCSLRWLSE WVKAGYKEPG IARCSSPEPM ADRLLLTTPT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 960
HRFQCKGPVD INIVAKCNAC LSSPCKNNGT CTQDPVELYR CACPYSYKGK DCTVPINTCI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1020
QNPCQHGGTC HLSDSHKDGF SCSCPLGFEG QRCEINPDDC EDNDCENNAT CVDGINNYVC
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1080
ICPPNYTGEL CDEVIDHCVP ELNLCQHEAK CIPLDKGFSC ECVPGYSGKL CETDNDDCVA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1140
HKCRHGAQCV DTINGYTCTC PQGFSGPFCE HPPPMVLLQT SPCDQYECQN GAQCIVVQQE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1200
PTCRCPPGFA GPRCEKLITV NFVGKDSYVE LASAKVRPQA NISLQVATDK DNGILLYKGD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1260
NDPLALELYQ GHVRLVYDSL SSPPTTVYSV ETVNDGQFHS VELVTLNQTL NLVVDKGTPK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1320
SLGKLQKQPA VGINSPLYLG GIPTSTGLSA LRQGTDRPLG GFHGCIHEVR INNELQDFKA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1380
LPPQSLGVSP GCKSCTVCKH GLCRSVEKDS VVCECRPGWT GPLCDQEARD PCLGHRCHHG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1440
KCVATGTSYM CKCAEGYGGD LCDNKNDSAN ACSAFKCHHG QCHISDQGEP YCLCQPGFSG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . |
EHCQQENPCL GQVVREVIRR QKGYASCATA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
---------- ---------- ----------
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
prediction of transmembrane regions with toppred2
***********************************
*TOPPREDM with eukaryotic function*
***********************************
tem27.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem27.___inter___
(1 sequences)
MAPGWAGVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGL
GLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVI
ERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPR
KAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTS
FNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRG
FNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLME
IPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDA
FQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQ
DLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLAD
YLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECF
MDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEAT
GIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRV
FRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFT
TLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIP
IQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGM
PKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSH
LSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLS
HLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPT
HRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGK
DCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDC
EDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAK
CIPLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTC
PQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFA
GPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGD
NDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTL
NLVVDKGTPKSLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLG
GFHGCIHEVRINNELQDFKALPPQSLGVSPGCKSCTVCKHGLCRSVEKDS
VVCECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMCKCAEGYGGD
LCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQENPCL
GQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQ
CTDGSSFVEEVERHLECGCLACS
(p)rokaryotic or (e)ukaryotic: e
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 2 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 16 36 1.560 Certain
2 641 661 1.534 Certain
3 789 809 0.747 Putative
4 1271 1291 1.057 Certain
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4
Loop length 15 604 127 461 232
K+R profile 3.00 + +
+ +
CYT-EXT prof - -0.71 -0.68
-0.42 -0.26
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.37
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.71
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 2 4
Loop length 15 604 609 232
K+R profile 3.00 +
+ +
CYT-EXT prof - -0.30
-0.42 -0.68
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 1.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 0.80
-> Orientation: N-out
----------------------------------------------------------------------
"tem27" 1523
16 36 #t 1.56042
641 661 #t 1.53438
789 809 #f 0.746875
1271 1291 #t 1.05729
************************************
*TOPPREDM with prokaryotic function*
************************************
tem27.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem27.___inter___
(1 sequences)
MAPGWAGVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGL
GLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVI
ERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPR
KAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTS
FNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRG
FNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLME
IPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDA
FQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQ
DLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLAD
YLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECF
MDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEAT
GIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRV
FRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFT
TLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIP
IQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGM
PKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSH
LSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLS
HLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPT
HRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGK
DCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDC
EDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAK
CIPLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTC
PQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFA
GPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGD
NDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTL
NLVVDKGTPKSLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLG
GFHGCIHEVRINNELQDFKALPPQSLGVSPGCKSCTVCKHGLCRSVEKDS
VVCECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMCKCAEGYGGD
LCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQENPCL
GQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQ
CTDGSSFVEEVERHLECGCLACS
(p)rokaryotic or (e)ukaryotic: p
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 2 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 16 36 1.560 Certain
2 641 661 1.534 Certain
3 789 809 0.747 Putative
4 1271 1291 1.057 Certain
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4
Loop length 15 604 127 461 232
K+R profile 3.00 + +
+ +
CYT-EXT prof - -0.71 -0.68
-0.42 -0.26
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.37
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: -0.71
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 2 4
Loop length 15 604 609 232
K+R profile 3.00 +
+ +
CYT-EXT prof - -0.30
-0.42 -0.68
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 1.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 2.0000
-> Orientation: N-in
CYT-EXT difference: 0.80
-> Orientation: N-out
----------------------------------------------------------------------
"tem27" 1523
16 36 #t 1.56042
641 661 #t 1.53438
789 809 #f 0.746875
1271 1291 #t 1.05729
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
NOW EXECUTING: /bio_software/1D/stat/saps/saps-stroh/SAPS.SSPA/saps /people/maria/tem27.___saps___
SAPS. Version of April 11, 1996.
Date run: Thu Jan 18 20:24:42 2001
File: /people/maria/tem27.___saps___
ID gi|4049589|dbj|BAA35186.1|
DE Slit-3 protein [Homo sapiens]
number of residues: 1523; molecular weight: 167.7 kdal
1 MAPGWAGVGA AVRARLALAL ALASVLSGPP AVACPTKCTC SAASVDCHGL GLRAVPRGIP
61 RNAERLDLDR NNITRITKMD FAGLKNLRVL HLEDNQVSVI ERGAFQDLKQ LERLRLNKNK
121 LQVLPELLFQ STPKLTRLDL SENQIQGIPR KAFRGITDVK NLQLDNNHIS CIEDGAFRAL
181 RDLEILTLNN NNISRILVTS FNHMPKIRTL RLHSNHLYCD CHLAWLSDWL RQRRTVGQFT
241 LCMAPVHLRG FNVADVQKKE YVCPAPHSEP PSCNANSISC PSPCTCSNNI VDCRGKGLME
301 IPANLPEGIV EIRLEQNSIK AIPAGAFTQY KKLKRIDISK NQISDIAPDA FQGLKSLTSL
361 VLYGNKITEI AKGLFDGLVS LQLLLLNANK INCLRVNTFQ DLQNLNLLSL YDNKLQTISK
421 GLFAPLQSIQ TLHLAQNPFV CDCHLKWLAD YLQDNPIETS GARCSSPRRL ANKRISQIKS
481 KKFRCSGSED YRSRFSSECF MDLVCPEKCR CEGTIVDCSN QKLVRIPSHL PEYVTDLRLN
541 DNEVSVLEAT GIFKKLPNLR KINLSNNKIK EVREGAFDGA ASVQELMLTG NQLETVHGRV
601 FRGLSGLKTL MLRSNLIGCV SNDTFAGLSS VRLLSLYDNR ITTITPGAFT TLVSLSTINL
661 LSNPFNCNCH LAWLGKWLRK RRIVSGNPRC QKPFFLKEIP IQDVAIQDFT CDGNEESSCQ
721 LSPRCPEQCT CMETVVRCSN KGLRALPRGM PKDVTELYLE GNHLTAVPRE LSALRHLTLI
781 DLSNNSISML TNYTFSNMSH LSTLILSYNR LRCIPVHAFN GLRSLRVLTL HGNDISSVPE
841 GSFNDLTSLS HLALGTNPLH CDCSLRWLSE WVKAGYKEPG IARCSSPEPM ADRLLLTTPT
901 HRFQCKGPVD INIVAKCNAC LSSPCKNNGT CTQDPVELYR CACPYSYKGK DCTVPINTCI
961 QNPCQHGGTC HLSDSHKDGF SCSCPLGFEG QRCEINPDDC EDNDCENNAT CVDGINNYVC
1021 ICPPNYTGEL CDEVIDHCVP ELNLCQHEAK CIPLDKGFSC ECVPGYSGKL CETDNDDCVA
1081 HKCRHGAQCV DTINGYTCTC PQGFSGPFCE HPPPMVLLQT SPCDQYECQN GAQCIVVQQE
1141 PTCRCPPGFA GPRCEKLITV NFVGKDSYVE LASAKVRPQA NISLQVATDK DNGILLYKGD
1201 NDPLALELYQ GHVRLVYDSL SSPPTTVYSV ETVNDGQFHS VELVTLNQTL NLVVDKGTPK
1261 SLGKLQKQPA VGINSPLYLG GIPTSTGLSA LRQGTDRPLG GFHGCIHEVR INNELQDFKA
1321 LPPQSLGVSP GCKSCTVCKH GLCRSVEKDS VVCECRPGWT GPLCDQEARD PCLGHRCHHG
1381 KCVATGTSYM CKCAEGYGGD LCDNKNDSAN ACSAFKCHHG QCHISDQGEP YCLCQPGFSG
1441 EHCQQENPCL GQVVREVIRR QKGYASCATA SKVPIMECRG GCGPQCCQPT RSKRRKYVFQ
1501 CTDGSSFVEE VERHLECGCL ACS
--------------------------------------------------------------------------------
COMPOSITIONAL ANALYSIS (extremes relative to: swp23s)
A : 81( 5.3%); C+ :106( 7.0%); D : 77( 5.1%); E : 73( 4.8%); F : 44( 2.9%)
G :105( 6.9%); H : 43( 2.8%); I : 72( 4.7%); K : 76( 5.0%); L :171(11.2%)
M : 16( 1.1%); N : 95( 6.2%); P : 90( 5.9%); Q : 67( 4.4%); R : 85( 5.6%)
S :113( 7.4%); T : 79( 5.2%); V : 89( 5.8%); W : 9( 0.6%); Y : 32( 2.1%)
KR : 161 ( 10.6%); ED : 150 ( 9.8%); AGP : 276 ( 18.1%);
KRED : 311 ( 20.4%); KR-ED : 11 ( 0.7%); FIKMNY : 335 ( 22.0%);
LVIFM : 392 ( 25.7%); ST : 192 ( 12.6%).
--------------------------------------------------------------------------------
CHARGE DISTRIBUTIONAL ANALYSIS
1 0000000000 00+0+00000 0000000000 000000+000 00000-0000 00+000+000
61 +00-+0-0-+ 0000+00+0- 0000+00+00 00--000000 -+0000-0+0 0-+0+00+0+
121 00000-0000 000+00+0-0 0-0000000+ +00+000-0+ 0000-00000 00--000+00
181 +-0-000000 0000+00000 00000+0+00 +00000000- 0000000-00 +0++000000
241 00000000+0 0000-00++- 00000000-0 0000000000 0000000000 0-0+0+000-
301 000000-000 -0+0-0000+ 0000000000 ++0++0-00+ 0000-000-0 0000+00000
361 00000+00-0 0+000-0000 000000000+ 0000+00000 -000000000 0-0+00000+
421 0000000000 0000000000 0-000+000- 000-000-00 00+0000++0 00++0000+0
481 ++0+0000-- 0+0+000-00 0-0000-+0+ 0-0000-000 0+00+00000 0-000-0+00
541 -0-0000-00 000++0000+ +000000+0+ -0+-000-00 0000-00000 000-0000+0
601 0+00000+00 00+0000000 00-0000000 0+00000-0+ 0000000000 0000000000
661 0000000000 00000+00++ ++000000+0 0+0000+-00 00-0000-00 0-00--0000
721 000+00-000 00-000+000 +00+000+00 0+-00-000- 00000000+- 0000+00000
781 -000000000 0000000000 000000000+ 0+00000000 00+00+0000 000-00000-
841 0000-00000 0000000000 0-000+000- 00+000+-00 00+0000-00 0-+0000000
901 0+000+000- 00000+0000 00000+0000 000-00-00+ 0000000+0+ -000000000
961 0000000000 000-00+-00 00000000-0 0+0-000--0 --0-0-0000 00-0000000
1021 00000000-0 0--00-0000 -000000-0+ 0000-+0000 -0000000+0 0-0-0--000
1081 0+0+000000 -000000000 000000000- 0000000000 000-00-000 000000000-
1141 000+000000 00+0-+0000 0000+-000- 0000+0+000 00000000-+ -000000+0-
1201 0-0000-000 000+000-00 0000000000 -000-00000 0-00000000 0000-+000+
1261 000+00+000 0000000000 0000000000 0+000-+000 0000000-0+ 000-00-0+0
1321 0000000000 00+00000+0 000+00-+-0 000-0+0000 0000-0-0+- 00000+0000
1381 +000000000 0+00-0000- 00-0+0-000 00000+0000 00000-00-0 0000000000
1441 -0000-0000 0000+-00++ 0+00000000 0+0000-0+0 0000000000 +0++++0000
1501 00-00000-- 0-+00-0000 000
A. CHARGE CLUSTERS.
Positive charge clusters (cmin = 11/30 or 15/45 or 18/60): none
Negative charge clusters (cmin = 11/30 or 14/45 or 17/60): none
Mixed charge clusters (cmin = 17/30 or 22/45 or 27/60): none
B. HIGH SCORING (UN)CHARGED SEGMENTS.
There are no high scoring positive charge segments.
There are no high scoring negative charge segments.
There are no high scoring mixed charge segments.
There are no high scoring uncharged segments.
C. CHARGE RUNS AND PATTERNS.
pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)|
lmin0 5 | 5 | 7 | 45 | 10 | 10 | 14 | 13 | 12 | 17 | 8 | 10 |
lmin1 7 | 7 | 9 | 54 | 13 | 12 | 16 | 15 | 15 | 20 | 9 | 12 |
lmin2 8 | 8 | 11 | 61 | 14 | 14 | 18 | 17 | 17 | 22 | 11 | 14 |
(Significance level: 0.010000; Minimal displayed length: 6)
There are no charge runs or patterns exceeding the given minimal lengths.
Run count statistics:
+ runs >= 4: 2, at 679; 1493;
- runs >= 3: 0
* runs >= 5: 0
0 runs >= 30: 1, at 641;
--------------------------------------------------------------------------------
DISTRIBUTION OF OTHER AMINO ACID TYPES
1. HIGH SCORING SEGMENTS.
There are no high scoring hydrophobic segments.
There are no high scoring transmembrane segments.
2. SPACINGS OF C.
H2N-33-C-3-C-1-C-6-C-123-C-47-C-1-C-20-C-20-C-9-C-6-C-3-C-1-C-6-C-99-C-47-C-1-C-20-C-20-C-13-C-5-C-3-C-1-C-6-C-100-C-47-C-1-C-20-C-20-C-7-C-5-C-3-C-1-C-6-C-74-C-47-C-1-C-20-C-20-C-11-C-2-C-4-C-5-C-9-C-1-C-8-C-6-C-4-C-5-C-11-C-1-C-8-C-6-C-4-C-5-C-8-C-1-C-8-C-6-C-6-C-5-C-8-C-1-C-8-C-6-C-4-C-5-C-8-C-1-C-8-C-13-C-4-C-5-C-8-C-1-C-8-C-150-C-26-C-2-C-2-C-4-C-9-C-1-C-8-C-7-C-4-C-4-C-8-C-1-C-8-C-9-C-4-C-4-C-9-C-1-C-8-C-5-C-17-C-10-C-3-C-3-C-C-13-C-15-C-1-C-2-C-1-COOH
2*. SPACINGS OF C and H. (additional deluxe function for ALEX)
H2N-33-C-3-C-1-C-6-C-H-42-H-76-H-2-C-31-H-9-H-2-H-2-C-1-C-H-19-C-4-H-15-C-3-H-5-C-6-C-3-C-1-C-6-C-99-C-39-H-7-C-1-C-H-19-C-20-C-13-C-5-C-3-C-1-C-6-C-10-H-67-H-21-C-47-C-1-C-H-19-C-20-C-7-C-5-C-3-C-1-C-6-C-24-H-12-H-23-H-12-C-3-H-13-H-19-H-8-H-C-1-C-20-C-16-H-3-C-11-C-2-C-4-C-5-C-9-C-1-C-8-C-6-C-4-C-1-H-3-C-H-4-H-5-C-1-C-8-C-6-C-4-C-5-C-8-C-1-C-8-C-5-H-C-6-C-1-H-3-C-8-C-1-C-8-C-6-C-2-H-1-C-1-H-3-C-8-C-1-C-8-C-1-H-11-C-4-C-5-C-8-C-1-C-8-C-57-H-26-H-63-H-1-C-1-H-24-C-2-C-2-C-1-H-2-C-9-C-1-C-8-C-7-C-2-H-1-C-H-H-2-C-8-C-1-C-8-C-9-C-4-C-H-H-2-C-H-8-C-1-C-7-H-C-5-C-17-C-10-C-3-C-3-C-C-13-C-12-H-2-C-1-C-2-C-1-COOH
--------------------------------------------------------------------------------
REPETITIVE STRUCTURES.
A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet.
Repeat core block length: 5
Aligned matching blocks:
[ ]--------[ 219- 226]-( -6)-[ 221- 234]
[ 407- 413]-( 27)-[ 441- 448]--------[ ]
[ 633- 639]-( 29)-[ 669- 674]-( -6)-[ 669- 682]
[ 407- 413] LLSLYDN
[ 633- 639] LLSLYDN
[ 219- 226] CDCHLAWL
[ 441- 448] CDCHLKWL
[ 669- 674] C__HLAWL
[ 221- 234] CHLAWLSDWLRQRR
[ 669- 682] CHLAWLGKWLRKRR
______________________________
[ 462- 467] ARCSSP
[ 882- 887] ARCSSP
_________________________
_____
[ 771- 775] LSALR
[1288-1292] LSALR
B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet.
(i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C)
Repeat core block length: 9
--------------------------------------------------------------------------------
MULTIPLETS.
A. AMINO ACID ALPHABET.
1. Total number of amino acid multiplets: 70 (Expected range: 59--114)
2. Histogram of spacings between consecutive amino acid multiplets:
(1-5) 12 (6-10) 13 (11-20) 19 (>=21) 27
3. Clusters of amino acid multiplets (cmin = 9/30 or 12/45 or 14/60): none
4. Long amino acid altplets (>= 8; Letters/Length/Position):
LA/8/16
B. CHARGE ALPHABET.
1. Total number of charge multiplets: 22 (Expected range: 12-- 45)
13 +plets (f+: 10.6%), 9 -plets (f-: 9.8%)
Total number of charge altplets: 26 (Critical number: 50)
2. Histogram of spacings between consecutive charge multiplets:
(1-5) 4 (6-10) 2 (11-20) 2 (>=21) 15
--------------------------------------------------------------------------------
PERIODICITY ANALYSIS.
A. AMINO ACID ALPHABET (core: 4; !-core: 5)
Location Period Element Copies Core Errors
2- 17 4 A... 4 4 0
16- 23 2 LA 4 4 0
53- 68 4 R... 4 4 0
114- 141 7 L...... 4 4 0
189- 192 1 N 4 4 0
272- 291 5 S.... 4 4 0
354- 441 8 L....... 9 5 ! 2
383- 386 1 L 4 4 0
466- 505 10 S.......R. 4 4 /0/./././././././1/./
1280-1307 7 G...... 4 4 0
1372-1441 10 C......... 6 4 1
B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 7)
and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core: 9)
Location Period Element Copies Core Errors
52- 219 8 i....... 19 10 ! 2
290- 441 8 i....... 17 13 ! 2
469- 498 5 *.00. 6 6 /0/./1/2/./
482- 541 10 *......0.0 6 6 /0/././././././2/./2/
556- 667 8 i00....0 13 10 ! /1/4/2/././././3/
736- 777 7 i00.0.. 6 6 /0/2/2/./2/././
774- 861 8 i00.0... 11 11 ! /0/2/2/./3/./././
--------------------------------------------------------------------------------
SPACING ANALYSIS.
Location (Quartile) Spacing Rank P-value Interpretation
47- 171 (1.) C( 124)C 2 of 107 0.0000 large 2. maximal spacing
336- 338 (1.) I( 2)I 73 of 73 0.0007 large minimal spacing
699- 701 (2.) I( 2)I 71 of 73 0.0007 matching minimum
911- 913 (3.) I( 2)I 72 of 73 0.0007 matching minimum
1154-1305 (4.) C( 151)C 1 of 107 0.0011 large 1. maximal spacing
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Pfam (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/Pfam
Sequence file: tem27
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LRR Leucine Rich Repeat 310.7 1.7e-89 20
LRRCT Leucine rich repeat C-terminal domain 236.2 4.6e-67 4
EGF EGF-like domain 234.6 1.4e-66 9
LRRNT Leucine rich repeat N-terminal domain 124.5 2e-33 4
laminin_G Laminin G domain 88.6 4.2e-24 1
Cys_knot Cystine-knot domain 16.2 0.00099 1
BPL Biotin protein ligase catalytic domai 2.0 29 1
PDGF Platelet-derived growth factor (PDGF) 1.5 30 1
Arthro_defensin Arthropod defensin 1.2 10 1
SRP54 SRP54-type protein 0.9 31 1
gag_MA Matrix protein (MA), p15 -0.2 87 1
Agglutinin Lectin (probable mannose binding) -0.3 35 1
DUF139 Domain of unknown function DUF139 -3.3 88 1
UBA UBA domain -4.4 89 1
metalthio Metallothionein -7.9 4.1 1
TIG IPT/TIG domain -12.4 84 1
laminin_EGF Laminin EGF-like (Domains III and V) -12.8 6.3 1
Plexin_repeat Plexin repeat -15.9 1e+02 1
TIL Trypsin Inhibitor like cysteine rich -16.0 11 1
ldl_recept_a Low-density lipoprotein receptor doma -18.6 70 1
vwc von Willebrand factor type C domain -22.8 51 1
Flu_NS2 Influenza non-structural protein (NS2 -31.8 57 1
Metallothio_PEC Plant PEC family metallothionein -35.1 2.4 1
MannoseP_isomer Mannose-6-phosphate isomerase -132.0 75 1
HrcA HrcA protein -186.1 99 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRRNT 1/4 33 60 .. 1 31 [] 43.4 5e-09
LRR 1/20 62 85 .. 1 23 [] 15.5 1.3
UBA 1/1 68 103 .. 1 41 [] -4.4 89
LRR 2/20 86 109 .. 1 23 [] 23.5 0.005
LRR 3/20 110 133 .. 1 23 [] 18.1 0.21
LRR 4/20 134 157 .. 1 23 [] 23.8 0.0041
LRR 5/20 158 181 .. 1 23 [] 16.8 0.5
MannoseP_isomer 1/1 81 198 .. 1 169 [] -132.0 75
LRR 6/20 182 205 .. 1 23 [] 16.3 0.75
LRR 7/20 206 227 .. 1 23 [] 0.3 9.3e+02
LRRCT 1/4 215 264 .. 1 54 [] 70.0 5e-17
LRRNT 2/4 279 306 .. 1 31 [] 35.9 8.9e-07
LRR 8/20 308 331 .. 1 23 [] 9.1 46
LRR 9/20 332 355 .. 1 23 [] 25.5 0.0012
LRR 10/20 356 379 .. 1 23 [] 20.3 0.046
Flu_NS2 1/1 310 402 .. 1 115 [] -31.8 57
LRR 11/20 380 403 .. 1 23 [] 9.6 39
gag_MA 1/1 416 426 .. 1 12 [. -0.2 87
LRR 12/20 404 427 .. 1 23 [] 18.6 0.15
HrcA 1/1 75 436 .. 1 343 [] -186.1 99
LRRCT 2/4 437 486 .. 1 54 [] 57.3 3.3e-13
LRRNT 3/4 504 531 .. 1 31 [] 32.5 9.7e-06
LRR 13/20 558 581 .. 1 23 [] 19.8 0.064
BPL 1/1 562 604 .. 130 174 .] 2.0 29
LRR 14/20 582 605 .. 1 23 [] 16.5 0.62
LRR 15/20 606 629 .. 1 23 [] 14.5 2.5
LRR 16/20 630 653 .. 1 23 [] 16.4 0.67
LRRCT 3/4 663 712 .. 1 54 [] 61.0 2.5e-14
LRRNT 4/4 724 751 .. 1 31 [] 35.7 1.1e-06
LRR 17/20 753 775 .. 1 23 [] 14.1 3.4
LRR 18/20 776 799 .. 1 23 [] 19.6 0.074
LRR 19/20 800 823 .. 1 23 [] 22.0 0.014
TIG 1/1 740 846 .. 1 103 [] -12.4 84
LRR 20/20 824 847 .. 1 23 [] 26.1 0.00081
Agglutinin 1/1 853 860 .. 85 94 .] -0.3 35
SRP54 1/1 886 895 .. 287 296 .] 0.9 31
LRRCT 4/4 857 906 .. 1 54 [] 67.7 2.5e-16
EGF 1/9 920 952 .. 1 45 [] 28.2 0.00019
Plexin_repeat 1/1 915 953 .. 1 67 [] -15.9 1e+02
EGF 2/9 959 993 .. 1 45 [] 33.6 4.5e-06
laminin_EGF 1/1 964 1000 .. 1 59 [] -12.8 6.3
metalthio 1/1 961 1024 .. 1 67 [] -7.9 4.1
EGF 3/9 1000 1031 .. 1 45 [] 41.2 2.4e-08
TIL 1/1 984 1045 .. 1 67 [] -16.0 11
EGF 4/9 1038 1071 .. 1 45 [] 36.8 4.8e-07
Arthro_defensin 1/1 1068 1101 .. 1 36 [] 1.2 10
EGF 5/9 1078 1109 .. 1 45 [] 39.1 1e-07
EGF 6/9 1123 1154 .. 1 45 [] 37.5 3.1e-07
laminin_G 1/1 1186 1317 .. 1 161 [] 88.6 4.2e-24
EGF 7/9 1332 1364 .. 1 45 [] 23.2 0.0062
vwc 1/1 1305 1377 .. 1 84 [] -22.8 51
EGF 8/9 1372 1402 .. 1 45 [] 31.8 1.5e-05
ldl_recept_a 1/1 1370 1414 .. 1 43 [] -18.6 70
EGF 9/9 1412 1443 .. 1 45 [] 27.7 0.00027
Metallothio_PEC 1/1 1401 1469 .. 1 80 [] -35.1 2.4
DUF139 1/1 1472 1488 .. 1 17 [] -3.3 88
PDGF 1/1 1512 1519 .. 77 84 .] 1.5 30
Cys_knot 1/1 1464 1522 .. 14 88 .] 16.2 0.00099
Alignments of top-scoring domains:
LRRNT: domain 1 of 4, from 33 to 60: score 43.4, E = 5e-09
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
aCp CtCs + +VdC+g+gL+ +vPr++P
gi|4049589 33 ACPTKCTCS--AASVDCHGLGLR-AVPRGIP 60
LRR: domain 1 of 20, from 62 to 85: score 15.5, E = 1.3
*->nLeeLdLsnN.LtslppglfsnLp<-*
n e+LdL++N++t + f++L+
gi|4049589 62 NAERLDLDRNnITRITKMDFAGLK 85
UBA: domain 1 of 1, from 68 to 103: score -4.4, E = 89
*->edeekieqLveMGFdreevvkALratngngverAaewLlsh<-*
d +i ++ M F + + L+ +++ + ++ +
gi|4049589 68 LDRNNITRITKMDFAGLKNLRVLHLEDNQ-----VSVIERG 103
LRR: domain 2 of 20, from 86 to 109: score 23.5, E = 0.005
*->nLeeLdLsnN.LtslppglfsnLp<-*
nL++L+L++N+ + ++ g+f++L+
gi|4049589 86 NLRVLHLEDNqVSVIERGAFQDLK 109
LRR: domain 3 of 20, from 110 to 133: score 18.1, E = 0.21
*->nLeeLdLsnN.LtslppglfsnLp<-*
+Le+L+L+ N+L+ lp+ lf++ p
gi|4049589 110 QLERLRLNKNkLQVLPELLFQSTP 133
LRR: domain 4 of 20, from 134 to 157: score 23.8, E = 0.0041
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L++LdLs N+++++p ++f++ +
gi|4049589 134 KLTRLDLSENqIQGIPRKAFRGIT 157
LRR: domain 5 of 20, from 158 to 181: score 16.8, E = 0.5
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ L L+nN+++ +++g+f+ L+
gi|4049589 158 DVKNLQLDNNhISCIEDGAFRALR 181
MannoseP_isomer: domain 1 of 1, from 81 to 198: score -132.0, E = 75
*->dseNsYvySesrLvAtvGvedLVVVeTkDA.vLVadrdkvQDVKkiV
++ G+++L V + +D +v V+ r+ QD K++
gi|4049589 81 -------FA--------GLKNLRVLHLEDNqVSVIERGAFQDLKQL- 111
eqLkangRtEhelHreVyRPWGsYdvideGeryhYqVKRItVKPGerLSl
e+L++n+++ l ++ + + + +d +e+ q++ I P + ++
gi|4049589 112 ERLRLNKNKLQVLPELLFQSTPKLTRLDLSEN---QIQGI---PRKAFR- 154
QmHhHRAEHWVVVsGTAkVtvdeevflLtENEStYIPlGaiHrLENPGkI
G+ V + + L N I Ga +L
gi|4049589 155 --------------GITDV----KNLQLDNNHISCIEDGAFRALR----- 181
PLeLIEVQsGsYLGEDDIVRfeD<-*
+Le++ + L I R+
gi|4049589 182 DLEIL---T---LNNNNISRILV 198
LRR: domain 6 of 20, from 182 to 205: score 16.3, E = 0.75
*->nLeeLdLsnN.LtslppglfsnLp<-*
Le L L+nN+++ + +f+++p
gi|4049589 182 DLEILTLNNNnISRILVTSFNHMP 205
LRR: domain 7 of 20, from 206 to 227: score 0.3, E = 9.3e+02
*->nLeeLdLsnN.LtslppglfsnLp<-*
++++L+L++N+L ++ L+
gi|4049589 206 KIRTLRLHSNhLYCDCH--LAWLS 227
LRRCT: domain 1 of 4, from 215 to 264: score 70.0, E = 5e-17
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
N+++CDC+L+wL++Wlr+ rr+ +q +++C+ P +lrG+ +++++
gi|4049589 215 NHLYCDCHLAWLSDWLRQ---RRTVGQ-FTLCMAPVHLRGFNVADVQ 257
psdfsCp<-*
++ +Cp
gi|4049589 258 KKEYVCP 264
LRRNT: domain 2 of 4, from 279 to 306: score 35.9, E = 8.9e-07
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
Cp +CtCs VdC+g+gL e+P lP
gi|4049589 279 SCPSPCTCS--NNIVDCRGKGLM-EIPANLP 306
LRR: domain 8 of 20, from 308 to 331: score 9.1, E = 46
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ e++L+ N+++ +p g+f + +
gi|4049589 308 GIVEIRLEQNsIKAIPAGAFTQYK 331
LRR: domain 9 of 20, from 332 to 355: score 25.5, E = 0.0012
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L+++d+s N+++++ p++f++L+
gi|4049589 332 KLKRIDISKNqISDIAPDAFQGLK 355
LRR: domain 10 of 20, from 356 to 379: score 20.3, E = 0.046
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L++L L +N++t++ glf++L
gi|4049589 356 SLTSLVLYGNkITEIAKGLFDGLV 379
Flu_NS2: domain 1 of 1, from 310 to 402: score -31.8, E = 57
*->dIlwRMsKMqlgSsthsSSvdlngiitQFEqLKLyrdSlgelVkrtG
++ R+ + g tQ+ +LK r+
gi|4049589 310 -VEIRLEQNSIKA-------IPAGAFTQYKKLK-----------RI- 336
DlHslqernrlwrEeLsqkfeeIrwlIlevrtvlantensfeqItfLqaL
D ++ + + q + l+l ++ + f+ ++Lq+L
gi|4049589 337 DI--SKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLL 384
qlLyEvedeirtfSfQli<-*
l + r+ fQ +
gi|4049589 385 LLNANKINCLRVNTFQDL 402
LRR: domain 11 of 20, from 380 to 403: score 9.6, E = 39
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L+ L L+ N++ l ++f++L+
gi|4049589 380 SLQLLLLNANkINCLRVNTFQDLQ 403
gag_MA: domain 1 of 1, from 416 to 426: score -0.2, E = 87
*->GQtvtkGLLTPL<-*
Qt +kGL PL
gi|4049589 416 -QTISKGLFAPL 426
LRR: domain 12 of 20, from 404 to 427: score 18.6, E = 0.15
*->nLeeLdLsnN.LtslppglfsnLp<-*
nL L+L +N+L++++ glf+ L+
gi|4049589 404 NLNLLSLYDNkLQTISKGLFAPLQ 427
HrcA: domain 1 of 1, from 75 to 436: score -186.1, E = 99
*->mlteRqlqILraIVedYiktgePVGSKtLsekhdialSsATIRNeMa
++t+ + L+ + +++++ + +e+ ++ +++
gi|4049589 75 RITKMDFAGLKNLRVLHLEDNQ----VSVIERGAFQ--------DLK 109
dLEklGyLekpHtSsGRvCPsekGYRyYVDhllevksltetekrqiksql
+LE+l R+ ++ + l e+ ++ ++ + + +
gi|4049589 110 QLERL-----------RL------NKNKLQVLPELLFQSTPKLTRLDLSE 142
ldVkgrqydldkllqkaakiLSeLtgl......talVlgPslekdilkhi
+ + + +ka + + ++ +l+ ++++++++ + +++ l+ +
gi|4049589 143 N-------QIQGIPRKAFRGITDVKNLqldnnhISCIEDGAFR--ALRDL 183
elipldphraLaVlvtdsGh.Venriinlpan..................
e+ l+++ + +lvt+++h ++ r+++l n+ + + ++ +++
gi|4049589 184 EILTLNNNNISRILVTSFNHmPKIRTLRLHSNhlycdchlawlsdwlrqr 233
............................................isesdL
++ ++ + + + ++ + + ++++ + +++++++ + ++is +
gi|4049589 234 rtvgqftlcmapvhlrgfnvadvqkkeyvcpaphseppscnansISCPSP 283
aiisnilndrLvGvklsEinqqledeleqilqkyg......l.Aadfvdv
++sn + d +G+ l Ei +l + +++i+ ++++ + + +A+ +++
gi|4049589 284 CTCSNNIVD-CRGKGLMEIPANLPEGIVEIRLEQNsikaipAgAFTQYKK 332
vlqillstldesseerlivmGgknlllnqpeFeDieklrqiLsllEderv
+++i +s +++s++ + + G ++ l + +k+++i + l d v
gi|4049589 333 LKRIDISKNQISDIAPDAFQG-LKSLTSLVLYG--NKITEIAKGLFDGLV 379
lleLlniyednkgdegvtirIGnEndlksmsgcSvItapYsigekkplGt
l+Ll + ++ + +++ + dl +++ +S+ ++ + k G
gi|4049589 380 SLQLLLLNANKI--NCLRVNTF--QDLQNLNLLSLYDNKLQTISK---GL 422
lgviGPtRmdYqrviplldlva<-*
++ + + i++l l
gi|4049589 423 FAPL--------QSIQTLHLAQ 436
LRRCT: domain 2 of 4, from 437 to 486: score 57.3, E = 3.3e-13
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
NPf CDC+L+wL++ l++ + +e + +rC+sP +l+ +++ ++
gi|4049589 437 NPFVCDCHLKWLADYLQD---NPIETS-GARCSSPRRLANKRISQIK 479
psdfsCp<-*
++f C+
gi|4049589 480 SKKFRCS 486
LRRNT: domain 3 of 4, from 504 to 531: score 32.5, E = 9.7e-06
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
Cp C+C+ g+ VdCs+++L ++P+ lP
gi|4049589 504 VCPEKCRCE--GTIVDCSNQKLV-RIPSHLP 531
LRR: domain 13 of 20, from 558 to 581: score 19.8, E = 0.064
*->nLeeLdLsnN.LtslppglfsnLp<-*
nL++++LsnN+++++ +g+f++
gi|4049589 558 NLRKINLSNNkIKEVREGAFDGAA 581
BPL: domain 1 of 1, from 562 to 604: score 2.0, E = 29
*->iNvnn....dkPeellnpgitpatslkeilgkdldidreellaellr
iN++n++ +++ e++ ++ a+s++e+ + +e++ ++++r
gi|4049589 562 INLSNnkikEVREGAFDG----AASVQELMLT--GNQLETVHGRVFR 602
nf<-*
+
gi|4049589 603 GL 604
LRR: domain 14 of 20, from 582 to 605: score 16.5, E = 0.62
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ +eL L +N+L++++ +f++L+
gi|4049589 582 SVQELMLTGNqLETVHGRVFRGLS 605
LRR: domain 15 of 20, from 606 to 629: score 14.5, E = 2.5
*->nLeeLdLsnN.LtslppglfsnLp<-*
L++L L++N + +++++f++L+
gi|4049589 606 GLKTLMLRSNlIGCVSNDTFAGLS 629
LRR: domain 16 of 20, from 630 to 653: score 16.4, E = 0.67
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ + L+L +N++t++ pg+f L
gi|4049589 630 SVRLLSLYDNrITTITPGAFTTLV 653
LRRCT: domain 3 of 4, from 663 to 712: score 61.0, E = 2.5e-14
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
NPfnC+C+L+wL Wlr+ rr+ + ++rC+ P l+ p+ ++
gi|4049589 663 NPFNCNCHLAWLGKWLRK---RRIVSG-NPRCQKPFFLKEIPIQDVA 705
psdfsCp<-*
+df+C+
gi|4049589 706 IQDFTCD 712
LRRNT: domain 4 of 4, from 724 to 751: score 35.7, E = 1.1e-06
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
Cp +CtC ++vV Cs++gL+ ++Pr+ P
gi|4049589 724 RCPEQCTCM--ETVVRCSNKGLR-ALPRGMP 751
LRR: domain 17 of 20, from 753 to 775: score 14.1, E = 3.4
*->nLeeLdLsnN.LtslppglfsnLp<-*
+eL+L++N+Lt +p + +s L+
gi|4049589 753 DVTELYLEGNhLTAVPRE-LSALR 775
LRR: domain 18 of 20, from 776 to 799: score 19.6, E = 0.074
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L+ +dLsnN+++ l + +fsn++
gi|4049589 776 HLTLIDLSNNsISMLTNYTFSNMS 799
LRR: domain 19 of 20, from 800 to 823: score 22.0, E = 0.014
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L +L Ls+N+L+ +p ++f++L+
gi|4049589 800 HLSTLILSYNrLRCIPVHAFNGLR 823
TIG: domain 1 of 1, from 740 to 846: score -12.4, E = 84
*->PvItsisPssgplsGGteiTitGsnLgsgsrPrirkntfededikVt
+ ++ P +g+ + te+++ G +L++++ + ++ +
gi|4049589 740 NKGLRALP-RGMPKDVTELYLEGNHLTAVP-----------RELSAL 774
fggvp........Cdvvssess............tqivCktPpva.pgps
+ + ++++ +++++ + s+ ++ ++ + + ++C +P a g +
gi|4049589 775 RHLTLidlsnnsiSMLTNYTFSnmshlstlilsyNRLRC-IPVHAfNGLR 823
ppvvtvsvdgggsgdgrssspvtFtYv<-*
++v +g+ d+ s +++F+ +
gi|4049589 824 S--LRVLTLHGN--DISSVPEGSFNDL 846
LRR: domain 20 of 20, from 824 to 847: score 26.1, E = 0.00081
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L++L L++N+++s+p+g+f++L+
gi|4049589 824 SLRVLTLHGNdISSVPEGSFNDLT 847
Agglutinin: domain 1 of 1, from 853 to 860: score -0.3, E = 35
*->ATGtnglPLr<-*
A+Gtn PL+
gi|4049589 853 ALGTN--PLH 860
SRP54: domain 1 of 1, from 886 to 895: score 0.9, E = 31
*->dperfvsrLL<-*
+pe +++rLL
gi|4049589 886 SPEPMADRLL 895
LRRCT: domain 4 of 4, from 857 to 906: score 67.7, E = 2.5e-16
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
NP++CDC+LrwL++W+++ ++e++ +rC+sPe++++ +ll+ +
gi|4049589 857 NPLHCDCSLRWLSEWVKA---GYKEPG-IARCSSPEPMAD-RLLLTT 898
p.sdfsCp<-*
p+ +f+C+
gi|4049589 899 PtHRFQCK 906
EGF: domain 1 of 9, from 920 to 952: score 28.2, E = 0.00019
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + pC+n+GtC+ p + y+C Cp y Gk+C
gi|4049589 920 CLSS-PCKNNGTCTQDP------VELYRCACPYS-----YKGKDC 952
*
gi|4049589 - -
Plexin_repeat: domain 1 of 1, from 915 to 953: score -15.9, E = 1e+02
*->nCsqhRqsCssClsapdpfgCgWCvsrkrCtrreaygpsfpyg.eCs
C +Cls+p C++++ Ct+ + ++y +C+
gi|4049589 915 ------AKCNACLSSP-------CKNNGTCTQDP----VELYRcACP 944
rgekpedNswlgwsqsseqCp<-*
++ + ++C
gi|4049589 945 YSY------------KGKDCT 953
EGF: domain 2 of 9, from 959 to 993: score 33.6, E = 4.5e-06
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C +n pC++gGtC+ + + ++g++C Cp G + G rC
gi|4049589 959 CIQN-PCQHGGTCHLSDS----HKDGFSCSCPLG-----FEGQRC 993
*
gi|4049589 - -
laminin_EGF: domain 1 of 1, from 964 to 1000: score -12.8, E = 6.3
*->CdCnphGslsddtCdsddelf..geetGqClkCkpnvtGrrCdrCkp
C+ hG +tC++ +++ + + C+ C +++G+rC+
gi|4049589 964 CQ---HG----GTCHL----SdsHKDGFSCS-CPLGFEGQRCEI--- 995
GyyglpsgdpgqgC<-*
+p +C
gi|4049589 996 --------NPD-DC 1000
metalthio: domain 1 of 1, from 961 to 1024: score -7.9, E = 4.1
*->mDPqnCsCatggsCtCgtsCk.CknCkCtsCkKs.ccsCcPagC..s
P C+ gg+C ++s k++ +C C+ ++ c P +C++
gi|4049589 961 QNP----CQHGGTCHLSDSHKdGFSCSCPLGFEGqRCEINPDDCedN 1003
kCaqgCvCkgggaasetskCsCCa<-*
+C C + ++ C C +
gi|4049589 1004 DCENNATCVD---GINNYVCICPP 1024
EGF: domain 3 of 9, from 1000 to 1031: score 41.2, E = 2.4e-08
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C +n C n++tCv++ + y C+Cpp ytG+ C
gi|4049589 1000 CEDN-DCENNATCVDGIN-------NYVCICPPN-----YTGELC 1031
*
gi|4049589 - -
TIL: domain 1 of 1, from 984 to 1045: score -16.0, E = 11
*->CpaneqyteCgpsCepsCsnpdgplettppCegtSpkvPstCkeg..
Cp + ++C + C++ Ce +tC+ g +
gi|4049589 984 CPLGFEGQRCE-INPDDCED--------NDCE-----NNATCVDGin 1016
...CvCqpGy...VrnndgdkCVp.rseC<-*
+ C+C+p y++++ ++ +d+CVp+ + C
gi|4049589 1017 nyvCICPPNYtgeLCDEVIDHCVPeLNLC 1045
EGF: domain 4 of 9, from 1038 to 1071: score 36.8, E = 4.8e-07
*->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
C p+ + C++ ++C+++ g++CeC pG y+Gk C
gi|4049589 1038 CVPELnLCQHEAKCIPLDK-------GFSCECVPG-----YSGKLC 1071
-*
gi|4049589 - -
Arthro_defensin: domain 1 of 1, from 1068 to 1101: score 1.2, E = 10
*->gkgcpvNhsaCaaHClakGGrrGGyCng.lka.vCvCR<-*
gk c+ ++ C aH k r G++C ++ ++ +C+C
gi|4049589 1068 GKLCETDNDDCVAH---KC-RHGAQCVDtINGyTCTCP 1101
EGF: domain 5 of 9, from 1078 to 1109: score 39.1, E = 1e-07
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + C +g++Cv+t + gytC+Cp+G ++G++C
gi|4049589 1078 CVAH-KCRHGAQCVDTIN-------GYTCTCPQG-----FSGPFC 1109
*
gi|4049589 - -
EGF: domain 6 of 9, from 1123 to 1154: score 37.5, E = 3.1e-07
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C++ C+ng++C+ + + ++tC+CppG ++G+rC
gi|4049589 1123 CDQY-ECQNGAQCIVVQQ-------EPTCRCPPG-----FAGPRC 1154
*
gi|4049589 - -
laminin_G: domain 1 of 1, from 1186 to 1317: score 88.6, E = 4.2e-24
*->FRTtepsGlLllgYggtntdrggkkeigdDFlaleLvdGrlevsydl
++T + +G+Ll Y g+n+ aleL G++++ yd
gi|4049589 1186 VATDKDNGILL--YKGDNDPL-----------ALELYQGHVRLVYDS 1219
GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeepskktls
s p ++++ ++++nDG+ H+vel+ ++ ++L Vd++ p
gi|4049589 1220 LSS----PPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTP------ 1259
etvvdgespsgpdvtsenLdldtppiLyvGGlPeqksvkrrlaaist...
+ +g+++++ + + p Ly+GG+P +s+ ++++++t+++
gi|4049589 1260 -------KSLGKLQKQPAVGINSP--LYLGGIP--TSTGLSALRQGTdrp 1298
..sFkGCirdvsingkpld<-*
++F+GCi++v+in++++d
gi|4049589 1299 lgGFHGCIHEVRINNELQD 1317
EGF: domain 7 of 9, from 1332 to 1364: score 23.2, E = 0.0062
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + ++C++ G C++++ ++ CeC pG +tG+ C
gi|4049589 1332 CKSCTVCKH-GLCRSVEK------DSVVCECRPG-----WTGPLC 1364
*
gi|4049589 - -
vwc: domain 1 of 1, from 1305 to 1377: score -22.8, E = 51
*->CvqnGvvYengetWkpdsq.....PnGvdkCtyiCtCddiedavrlg
C++ ++ ++ + +k ++++ + ++G +Ct +C+ l
gi|4049589 1305 CIHEVRINNELQDFKALPPqslgvSPGCKSCT---VCKH-----GLC 1343
gkvlCdkitCppel.LpsldCpnprrvdalvippGECCpewvC<-*
+ v+ d ++C+ + +++ C++ + + C + +C
gi|4049589 1344 RSVEKDSVVCECRPgWTGPLCDQE--------ARDPCLG-HRC 1377
EGF: domain 8 of 9, from 1372 to 1402: score 31.8, E = 1.5e-05
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + C++ G+Cv t+ +y C+C++G y G+ C
gi|4049589 1372 CLGH-RCHH-GKCVATGT-------SYMCKCAEG-----YGGDLC 1402
*
gi|4049589 - -
ldl_recept_a: domain 1 of 1, from 1370 to 1414: score -18.6, E = 70
*->stCggpdeFqCgsgrrCIpr..swvC.....DGdpDCeDGSDEslen
++C ++C++g+ C++ ++s+ C+ ++ G + C++ D
gi|4049589 1370 DPCL---GHRCHHGK-CVATgtSYMCkcaegYGGDLCDNKNDS-ANA 1411
Caa<-*
C+a
gi|4049589 1412 CSA 1414
EGF: domain 9 of 9, from 1412 to 1443: score 27.7, E = 0.00027
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C+ C++ G+C+ + + g+++C C+pG ++G++C
gi|4049589 1412 CSAF-KCHH-GQCHISDQ------GEPYCLCQPG-----FSGEHC 1443
*
gi|4049589 - -
Metallothio_PEC: domain 1 of 1, from 1401 to 1469: score -35.1, E = 2.4
*->gCDDkCGCpsPCPGGkaCRCtsggaaeAsaGdqEHttCpC.....GE
CD k + C a C g + dq+ C C+++ +GE
gi|4049589 1401 LCDNKNDSANAC---SAFKCHHG---QCHISDQGEPYCLCqpgfsGE 1441
HCGC.NPCtCpksetptgrkgrRAnCsCGagCtCasCAS<-*
HC +NPC + r + asCA+
gi|4049589 1442 HCQQeNPCL-GQVVREVIRRQK----------GYASCAT 1469
DUF139: domain 1 of 1, from 1472 to 1488: score -3.3, E = 88
*->aqCapaCqpsCqssCvq<-*
+ + C C ++C q
gi|4049589 1472 KVPIMECRGGCGPQCCQ 1488
PDGF: domain 1 of 1, from 1512 to 1519: score 1.5, E = 30
*->eqHlkCeC<-*
e Hl+C C
gi|4049589 1512 ERHLECGC 1519
Cys_knot: domain 1 of 1, from 1464 to 1522: score 16.2, E = 0.00099
*->kegCtscktvnttiCaGyCytkdpvykdprsllkQcvCcypevtyet
++ C+ +v + C G C+ p+ Cc+p++++++
gi|4049589 1464 YASCATASKVPIMECRGGCG--------PQ-------CCQPTRSKRR 1495
kvlpgCppGvdptvtYpvAlsChCgdkC<-*
k+++ C++G+ ++ ++ l+C C +C
gi|4049589 1496 KYVFQCTDGSSFVEEVERHLECGCL-AC 1522
//
Start with PfamFrag (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/PfamFrag
Sequence file: tem27
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LRR Leucine Rich Repeat 272.5 5.7e-78 20
LRRCT Leucine rich repeat C-terminal domain 221.6 8e-73 5
EGF EGF-like domain 219.5 5.1e-62 9
LRRNT Leucine rich repeat N-terminal domain 118.2 1.5e-31 5
laminin_G Laminin G domain 88.6 4.2e-24 1
Cys_knot Cystine-knot domain 16.2 0.00099 1
DSL Delta serrate ligand 9.5 0.15 4
S_mold_repeat Dictyostelium (slime mold) repeats 3.3 53 1
crystall Beta/Gamma crystallin 2.8 53 1
TNFR_c6 TNFR/NGFR cysteine-rich region 2.1 45 1
BPL Biotin protein ligase catalytic domain 2.0 29 1
UVR UvrB/uvrC motif 1.6 92 1
PDGF Platelet-derived growth factor (PDGF) 1.5 30 1
dCMP_cyt_deam Cytidine and deoxycytidylate deaminase 1.2 43 1
MarR MarR family 1.1 64 1
SRP54 SRP54-type protein 0.9 31 1
rrm RNA recognition motif. (a.k.a. RRM, RBD 0.9 86 1
CX CX module 0.5 68 1
DUF41 Domain of unknown function DUF41 0.4 42 1
gag_MA Matrix protein (MA), p15 -0.2 87 1
Agglutinin Lectin (probable mannose binding) -0.3 35 1
arf ADP-ribosylation factor family -0.4 87 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRRNT 1/5 33 60 .. 1 31 [] 41.5 8.9e-10
MarR 1/1 63 78 .. 26 41 .. 1.1 64
LRR 1/20 62 85 .. 1 23 [] 13.5 0.065
LRR 2/20 86 109 .. 1 23 [] 21.5 0.00036
LRR 3/20 110 133 .. 1 23 [] 16.1 0.012
LRR 4/20 134 157 .. 1 23 [] 21.8 0.0003
LRR 5/20 158 181 .. 1 23 [] 14.9 0.028
LRR 6/20 182 205 .. 1 23 [] 14.3 0.04
LRR 7/20 206 217 .. 1 11 [. 0.8 2.6e+02
LRRCT 1/5 215 264 .. 1 54 [] 68.1 1.7e-21
dCMP_cyt_deam 1/1 282 298 .. 77 100 .] 1.2 43
LRRNT 2/5 279 306 .. 1 31 [] 34.1 1.1e-07
LRR 8/20 308 331 .. 1 23 [] 7.2 4.2
LRR 9/20 332 355 .. 1 23 [] 23.5 9.8e-05
LRR 10/20 356 379 .. 1 23 [] 18.3 0.0029
LRR 11/20 380 403 .. 1 23 [] 7.7 3
gag_MA 1/1 416 426 .. 1 12 [. -0.2 87
LRR 12/20 404 427 .. 1 23 [] 16.6 0.0088
arf 1/1 445 455 .. 181 191 .] -0.4 87
LRRCT 2/5 437 486 .. 1 54 [] 55.4 3.1e-17
UVR 1/1 472 491 .. 1 20 [. 1.6 92
LRRNT 3/5 504 531 .. 1 31 [] 30.6 1e-06
LRR 13/20 558 581 .. 1 23 [] 17.8 0.004
BPL 1/1 562 604 .. 130 174 .] 2.0 29
LRR 14/20 582 605 .. 1 23 [] 14.6 0.034
LRR 15/20 606 629 .. 1 23 [] 12.5 0.12
LRR 16/20 630 653 .. 1 23 [] 14.4 0.036
LRRCT 3/5 663 712 .. 1 54 [] 59.1 1.7e-18
LRRNT 4/5 724 751 .. 1 31 [] 33.8 1.3e-07
LRRNT 5/5 764 772 .. 22 31 .] 0.7 2.5e+02
LRR 17/20 753 775 .. 1 23 [] 12.1 0.16
LRR 18/20 776 799 .. 1 23 [] 17.6 0.0045
DUF41 1/1 790 801 .. 1 16 [. 0.4 42
LRR 19/20 800 823 .. 1 23 [] 20.0 0.00095
LRR 20/20 824 847 .. 1 23 [] 24.1 6.6e-05
Agglutinin 1/1 853 860 .. 85 94 .] -0.3 35
SRP54 1/1 886 895 .. 287 296 .] 0.9 31
LRRCT 4/5 857 906 .. 1 54 [] 65.8 1e-20
S_mold_repeat 1/1 918 941 .. 1 24 [] 3.3 53
EGF 1/9 920 952 .. 1 45 [] 26.5 8.7e-06
EGF 2/9 959 993 .. 1 45 [] 31.9 2.7e-07
crystall 1/1 987 1000 .. 9 23 .. 2.8 53
EGF 3/9 1000 1031 .. 1 45 [] 39.5 1.9e-09
EGF 4/9 1038 1071 .. 1 45 [] 35.2 3.2e-08
DSL 1/4 1099 1109 .. 57 67 .] 0.6 81
EGF 5/9 1078 1109 .. 1 45 [] 37.4 7.5e-09
LRRCT 5/5 1107 1129 .. 30 54 .] -2.1 5.1e+02
DSL 2/4 1144 1154 .. 57 67 .] 2.8 17
EGF 6/9 1123 1154 .. 1 45 [] 35.8 2.1e-08
rrm 1/1 1277 1293 .. 1 17 [. 0.9 86
laminin_G 1/1 1186 1317 .. 1 161 [] 88.6 4.2e-24
TNFR_c6 1/1 1332 1342 .. 16 28 .. 2.1 45
DSL 3/4 1355 1364 .. 58 67 .] 6.3 1.5
EGF 7/9 1332 1364 .. 1 45 [] 21.5 0.00023
EGF 8/9 1372 1402 .. 1 45 [] 30.2 8.1e-07
EGF 9/9 1412 1443 .. 1 45 [] 26.0 1.2e-05
DSL 4/4 1433 1443 .. 57 67 .] 5.1 3.3
CX 1/1 1482 1490 .. 61 69 .] 0.5 68
PDGF 1/1 1512 1519 .. 77 84 .] 1.5 30
Cys_knot 1/1 1464 1522 .. 14 88 .] 16.2 0.00099
Alignments of top-scoring domains:
LRRNT: domain 1 of 5, from 33 to 60: score 41.5, E = 8.9e-10
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
aCp CtCs + +VdC+g+gL+ +vPr++P
gi|4049589 33 ACPTKCTCS--AASVDCHGLGLR-AVPRGIP 60
MarR: domain 1 of 1, from 63 to 78: score 1.1, E = 64
*->AeklgvdrstvTrvld<-*
Ae+l++dr ++Tr+++
gi|4049589 63 AERLDLDRNNITRITK 78
LRR: domain 1 of 20, from 62 to 85: score 13.5, E = 0.065
*->nLeeLdLsnN.LtslppglfsnLp<-*
n e+LdL++N++t + f++L+
gi|4049589 62 NAERLDLDRNnITRITKMDFAGLK 85
LRR: domain 2 of 20, from 86 to 109: score 21.5, E = 0.00036
*->nLeeLdLsnN.LtslppglfsnLp<-*
nL++L+L++N+ + ++ g+f++L+
gi|4049589 86 NLRVLHLEDNqVSVIERGAFQDLK 109
LRR: domain 3 of 20, from 110 to 133: score 16.1, E = 0.012
*->nLeeLdLsnN.LtslppglfsnLp<-*
+Le+L+L+ N+L+ lp+ lf++ p
gi|4049589 110 QLERLRLNKNkLQVLPELLFQSTP 133
LRR: domain 4 of 20, from 134 to 157: score 21.8, E = 0.0003
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L++LdLs N+++++p ++f++ +
gi|4049589 134 KLTRLDLSENqIQGIPRKAFRGIT 157
LRR: domain 5 of 20, from 158 to 181: score 14.9, E = 0.028
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ L L+nN+++ +++g+f+ L+
gi|4049589 158 DVKNLQLDNNhISCIEDGAFRALR 181
LRR: domain 6 of 20, from 182 to 205: score 14.3, E = 0.04
*->nLeeLdLsnN.LtslppglfsnLp<-*
Le L L+nN+++ + +f+++p
gi|4049589 182 DLEILTLNNNnISRILVTSFNHMP 205
LRR: domain 7 of 20, from 206 to 217: score 0.8, E = 2.6e+02
*->nLeeLdLsnN.L<-*
++++L+L++N+L
gi|4049589 206 KIRTLRLHSNhL 217
LRRCT: domain 1 of 5, from 215 to 264: score 68.1, E = 1.7e-21
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
N+++CDC+L+wL++Wlr+ rr+ +q +++C+ P +lrG+ +++++
gi|4049589 215 NHLYCDCHLAWLSDWLRQ---RRTVGQ-FTLCMAPVHLRGFNVADVQ 257
psdfsCp<-*
++ +Cp
gi|4049589 258 KKEYVCP 264
dCMP_cyt_deam: domain 1 of 1, from 282 to 298: score 1.2, E = 43
*->ePCgHyGRTpmCaqaiiesgikkV<-*
+PC +C+ i+ ++ k +
gi|4049589 282 SPC-------TCSNNIVDCRGKGL 298
LRRNT: domain 2 of 5, from 279 to 306: score 34.1, E = 1.1e-07
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
Cp +CtCs VdC+g+gL e+P lP
gi|4049589 279 SCPSPCTCS--NNIVDCRGKGLM-EIPANLP 306
LRR: domain 8 of 20, from 308 to 331: score 7.2, E = 4.2
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ e++L+ N+++ +p g+f + +
gi|4049589 308 GIVEIRLEQNsIKAIPAGAFTQYK 331
LRR: domain 9 of 20, from 332 to 355: score 23.5, E = 9.8e-05
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L+++d+s N+++++ p++f++L+
gi|4049589 332 KLKRIDISKNqISDIAPDAFQGLK 355
LRR: domain 10 of 20, from 356 to 379: score 18.3, E = 0.0029
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L++L L +N++t++ glf++L
gi|4049589 356 SLTSLVLYGNkITEIAKGLFDGLV 379
LRR: domain 11 of 20, from 380 to 403: score 7.7, E = 3
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L+ L L+ N++ l ++f++L+
gi|4049589 380 SLQLLLLNANkINCLRVNTFQDLQ 403
gag_MA: domain 1 of 1, from 416 to 426: score -0.2, E = 87
*->GQtvtkGLLTPL<-*
Qt +kGL PL
gi|4049589 416 -QTISKGLFAPL 426
LRR: domain 12 of 20, from 404 to 427: score 16.6, E = 0.0088
*->nLeeLdLsnN.LtslppglfsnLp<-*
nL L+L +N+L++++ glf+ L+
gi|4049589 404 NLNLLSLYDNkLQTISKGLFAPLQ 427
arf: domain 1 of 1, from 445 to 455: score -0.4, E = 87
*->ldWLsnnikkr<-*
l+WL++++++
gi|4049589 445 LKWLADYLQDN 455
LRRCT: domain 2 of 5, from 437 to 486: score 55.4, E = 3.1e-17
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
NPf CDC+L+wL++ l++ + +e + +rC+sP +l+ +++ ++
gi|4049589 437 NPFVCDCHLKWLADYLQD---NPIETS-GARCSSPRRLANKRISQIK 479
psdfsCp<-*
++f C+
gi|4049589 480 SKKFRCS 486
UVR: domain 1 of 1, from 472 to 491: score 1.6, E = 92
*->ekeikeLekeMeeAaenldF<-*
+k+i +++ ++ +++ ++d+
gi|4049589 472 NKRISQIKSKKFRCSGSEDY 491
LRRNT: domain 3 of 5, from 504 to 531: score 30.6, E = 1e-06
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
Cp C+C+ g+ VdCs+++L ++P+ lP
gi|4049589 504 VCPEKCRCE--GTIVDCSNQKLV-RIPSHLP 531
LRR: domain 13 of 20, from 558 to 581: score 17.8, E = 0.004
*->nLeeLdLsnN.LtslppglfsnLp<-*
nL++++LsnN+++++ +g+f++
gi|4049589 558 NLRKINLSNNkIKEVREGAFDGAA 581
BPL: domain 1 of 1, from 562 to 604: score 2.0, E = 29
*->iNvnn....dkPeellnpgitpatslkeilgkdldidreellaellr
iN++n++ +++ e++ ++ a+s++e+ + +e++ ++++r
gi|4049589 562 INLSNnkikEVREGAFDG----AASVQELMLT--GNQLETVHGRVFR 602
nf<-*
+
gi|4049589 603 GL 604
LRR: domain 14 of 20, from 582 to 605: score 14.6, E = 0.034
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ +eL L +N+L++++ +f++L+
gi|4049589 582 SVQELMLTGNqLETVHGRVFRGLS 605
LRR: domain 15 of 20, from 606 to 629: score 12.5, E = 0.12
*->nLeeLdLsnN.LtslppglfsnLp<-*
L++L L++N + +++++f++L+
gi|4049589 606 GLKTLMLRSNlIGCVSNDTFAGLS 629
LRR: domain 16 of 20, from 630 to 653: score 14.4, E = 0.036
*->nLeeLdLsnN.LtslppglfsnLp<-*
+ + L+L +N++t++ pg+f L
gi|4049589 630 SVRLLSLYDNrITTITPGAFTTLV 653
LRRCT: domain 3 of 5, from 663 to 712: score 59.1, E = 1.7e-18
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
NPfnC+C+L+wL Wlr+ rr+ + ++rC+ P l+ p+ ++
gi|4049589 663 NPFNCNCHLAWLGKWLRK---RRIVSG-NPRCQKPFFLKEIPIQDVA 705
psdfsCp<-*
+df+C+
gi|4049589 706 IQDFTCD 712
LRRNT: domain 4 of 5, from 724 to 751: score 33.8, E = 1.3e-07
*->aCpreCtCspfglvVdCsgrgLtlevPrdlP<-*
Cp +CtC ++vV Cs++gL+ ++Pr+ P
gi|4049589 724 RCPEQCTCM--ETVVRCSNKGLR-ALPRGMP 751
LRRNT: domain 5 of 5, from 764 to 772: score 0.7, E = 2.5e+02
*->LtlevPrdlP<-*
Lt +vPr+l+
gi|4049589 764 LT-AVPRELS 772
LRR: domain 17 of 20, from 753 to 775: score 12.1, E = 0.16
*->nLeeLdLsnN.LtslppglfsnLp<-*
+eL+L++N+Lt +p + +s L+
gi|4049589 753 DVTELYLEGNhLTAVPRE-LSALR 775
LRR: domain 18 of 20, from 776 to 799: score 17.6, E = 0.0045
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L+ +dLsnN+++ l + +fsn++
gi|4049589 776 HLTLIDLSNNsISMLTNYTFSNMS 799
DUF41: domain 1 of 1, from 790 to 801: score 0.4, E = 42
*->lteeQLlstFsNvkhl<-*
lt+ +tFsN+ hl
gi|4049589 790 LTN----YTFSNMSHL 801
LRR: domain 19 of 20, from 800 to 823: score 20.0, E = 0.00095
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L +L Ls+N+L+ +p ++f++L+
gi|4049589 800 HLSTLILSYNrLRCIPVHAFNGLR 823
LRR: domain 20 of 20, from 824 to 847: score 24.1, E = 6.6e-05
*->nLeeLdLsnN.LtslppglfsnLp<-*
+L++L L++N+++s+p+g+f++L+
gi|4049589 824 SLRVLTLHGNdISSVPEGSFNDLT 847
Agglutinin: domain 1 of 1, from 853 to 860: score -0.3, E = 35
*->ATGtnglPLr<-*
A+Gtn PL+
gi|4049589 853 ALGTN--PLH 860
SRP54: domain 1 of 1, from 886 to 895: score 0.9, E = 31
*->dperfvsrLL<-*
+pe +++rLL
gi|4049589 886 SPEPMADRLL 895
LRRCT: domain 4 of 5, from 857 to 906: score 65.8, E = 1e-20
*->NPfnCDCeLrwLlrWlretnprrledqedlrCasPeslrGqpllell
NP++CDC+LrwL++W+++ ++e++ +rC+sPe++++ +ll+ +
gi|4049589 857 NPLHCDCSLRWLSEWVKA---GYKEPG-IARCSSPEPMAD-RLLLTT 898
p.sdfsCp<-*
p+ +f+C+
gi|4049589 899 PtHRFQCK 906
S_mold_repeat: domain 1 of 1, from 918 to 941: score 3.3, E = 53
*->nactvDsCsnstgvthtpiacddn<-*
nac C+n++++t+ p+++
gi|4049589 918 NACLSSPCKNNGTCTQDPVELYRC 941
EGF: domain 1 of 9, from 920 to 952: score 26.5, E = 8.7e-06
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + pC+n+GtC+ p + y+C Cp y Gk+C
gi|4049589 920 CLSS-PCKNNGTCTQDP------VELYRCACPYS-----YKGKDC 952
*
gi|4049589 - -
EGF: domain 2 of 9, from 959 to 993: score 31.9, E = 2.7e-07
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C +n pC++gGtC+ + + ++g++C Cp G + G rC
gi|4049589 959 CIQN-PCQHGGTCHLSDS----HKDGFSCSCPLG-----FEGQRC 993
*
gi|4049589 - -
crystall: domain 1 of 1, from 987 to 1000: score 2.8, E = 53
*->nFqGrmyEltpGdDC<-*
+F G+++E++p dDC
gi|4049589 987 GFEGQRCEINP-DDC 1000
EGF: domain 3 of 9, from 1000 to 1031: score 39.5, E = 1.9e-09
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C +n C n++tCv++ + y C+Cpp ytG+ C
gi|4049589 1000 CEDN-DCENNATCVDGIN-------NYVCICPPN-----YTGELC 1031
*
gi|4049589 - -
EGF: domain 4 of 9, from 1038 to 1071: score 35.2, E = 3.2e-08
*->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
C p+ + C++ ++C+++ g++CeC pG y+Gk C
gi|4049589 1038 CVPELnLCQHEAKCIPLDK-------GFSCECVPG-----YSGKLC 1071
-*
gi|4049589 - -
DSL: domain 1 of 4, from 1099 to 1109: score 0.6, E = 81
*->lCleGWkGeyC<-*
+C+ G +G+ C
gi|4049589 1099 TCPQGFSGPFC 1109
EGF: domain 5 of 9, from 1078 to 1109: score 37.4, E = 7.5e-09
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + C +g++Cv+t + gytC+Cp+G ++G++C
gi|4049589 1078 CVAH-KCRHGAQCVDTIN-------GYTCTCPQG-----FSGPFC 1109
*
gi|4049589 - -
LRRCT: domain 5 of 5, from 1107 to 1129: score -2.1, E = 5.1e+02
*->lrCasPeslrGqpllellp.sdfsCp<-*
+ C++P+++ ll+ +p + C+
gi|4049589 1107 PFCEHPPPM---VLLQTSPcDQYECQ 1129
DSL: domain 2 of 4, from 1144 to 1154: score 2.8, E = 17
*->lCleGWkGeyC<-*
+C++G G+ C
gi|4049589 1144 RCPPGFAGPRC 1154
EGF: domain 6 of 9, from 1123 to 1154: score 35.8, E = 2.1e-08
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C++ C+ng++C+ + + ++tC+CppG ++G+rC
gi|4049589 1123 CDQY-ECQNGAQCIVVQQ-------EPTCRCPPG-----FAGPRC 1154
*
gi|4049589 - -
rrm: domain 1 of 1, from 1277 to 1293: score 0.9, E = 86
*->lfVgNLppdvteedLkd<-*
l+ g++p+++ + L++
gi|4049589 1277 LYLGGIPTSTGLSALRQ 1293
laminin_G: domain 1 of 1, from 1186 to 1317: score 88.6, E = 4.2e-24
*->FRTtepsGlLllgYggtntdrggkkeigdDFlaleLvdGrlevsydl
++T + +G+Ll Y g+n+ aleL G++++ yd
gi|4049589 1186 VATDKDNGILL--YKGDNDPL-----------ALELYQGHVRLVYDS 1219
GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeepskktls
s p ++++ ++++nDG+ H+vel+ ++ ++L Vd++ p
gi|4049589 1220 LSS----PPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTP------ 1259
etvvdgespsgpdvtsenLdldtppiLyvGGlPeqksvkrrlaaist...
+ +g+++++ + + p Ly+GG+P +s+ ++++++t+++
gi|4049589 1260 -------KSLGKLQKQPAVGINSP--LYLGGIP--TSTGLSALRQGTdrp 1298
..sFkGCirdvsingkpld<-*
++F+GCi++v+in++++d
gi|4049589 1299 lgGFHGCIHEVRINNELQD 1317
TNFR_c6: domain 1 of 1, from 1332 to 1342: score 2.1, E = 45
*->ClsCsrCepemGq<-*
C+sC++C + G+
gi|4049589 1332 CKSCTVCKH--GL 1342
DSL: domain 3 of 4, from 1355 to 1364: score 6.3, E = 1.5
*->CleGWkGeyC<-*
C +GW+G+ C
gi|4049589 1355 CRPGWTGPLC 1364
EGF: domain 7 of 9, from 1332 to 1364: score 21.5, E = 0.00023
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + ++C++ G C++++ ++ CeC pG +tG+ C
gi|4049589 1332 CKSCTVCKH-GLCRSVEK------DSVVCECRPG-----WTGPLC 1364
*
gi|4049589 - -
EGF: domain 8 of 9, from 1372 to 1402: score 30.2, E = 8.1e-07
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C + C++ G+Cv t+ +y C+C++G y G+ C
gi|4049589 1372 CLGH-RCHH-GKCVATGT-------SYMCKCAEG-----YGGDLC 1402
*
gi|4049589 - -
EGF: domain 9 of 9, from 1412 to 1443: score 26.0, E = 1.2e-05
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C+ C++ G+C+ + + g+++C C+pG ++G++C
gi|4049589 1412 CSAF-KCHH-GQCHISDQ------GEPYCLCQPG-----FSGEHC 1443
*
gi|4049589 - -
DSL: domain 4 of 4, from 1433 to 1443: score 5.1, E = 3.3
*->lCleGWkGeyC<-*
lC +G +Ge+C
gi|4049589 1433 LCQPGFSGEHC 1443
CX: domain 1 of 1, from 1482 to 1490: score 0.5, E = 68
*->CGmeCCedd<-*
CG CC ++
gi|4049589 1482 CGPQCCQPT 1490
PDGF: domain 1 of 1, from 1512 to 1519: score 1.5, E = 30
*->eqHlkCeC<-*
e Hl+C C
gi|4049589 1512 ERHLECGC 1519
Cys_knot: domain 1 of 1, from 1464 to 1522: score 16.2, E = 0.00099
*->kegCtscktvnttiCaGyCytkdpvykdprsllkQcvCcypevtyet
++ C+ +v + C G C+ p+ Cc+p++++++
gi|4049589 1464 YASCATASKVPIMECRGGCG--------PQ-------CCQPTRSKRR 1495
kvlpgCppGvdptvtYpvAlsChCgdkC<-*
k+++ C++G+ ++ ++ l+C C +C
gi|4049589 1496 KYVFQCTDGSSFVEEVERHLECGCL-AC 1522
//
Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib
Sequence file: tem27
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LRR-ma 115.5 1e-30 23
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRR-ma 1/23 60 73 .. 1 14 [] 4.6 3.4e+02
LRR-ma 2/23 84 97 .. 1 14 [] 10.3 33
LRR-ma 3/23 108 121 .. 1 14 [] 11.8 17
LRR-ma 4/23 132 145 .. 1 14 [] 11.6 19
LRR-ma 5/23 156 169 .. 1 14 [] 4.9 3e+02
LRR-ma 6/23 180 193 .. 1 14 [] 9.3 49
LRR-ma 7/23 204 217 .. 1 14 [] 11.0 24
LRR-ma 8/23 306 319 .. 1 14 [] 1.8 1.1e+03
LRR-ma 9/23 330 343 .. 1 14 [] 7.2 1.2e+02
LRR-ma 10/23 354 367 .. 1 14 [] 11.7 18
LRR-ma 11/23 378 391 .. 1 14 [] 5.3 2.6e+02
LRR-ma 12/23 402 415 .. 1 14 [] 7.8 93
LRR-ma 13/23 426 439 .. 1 14 [] 9.3 49
LRR-ma 14/23 556 569 .. 1 14 [] 16.1 0.86
LRR-ma 15/23 580 593 .. 1 14 [] 0.7 1.6e+03
LRR-ma 16/23 604 617 .. 1 14 [] 5.8 2.1e+02
LRR-ma 17/23 628 641 .. 1 14 [] 8.6 66
LRR-ma 18/23 652 665 .. 1 14 [] 4.6 3.5e+02
LRR-ma 19/23 751 764 .. 1 14 [] 6.6 1.5e+02
LRR-ma 20/23 774 787 .. 1 14 [] 12.5 10
LRR-ma 21/23 798 811 .. 1 14 [] 12.8 8.1
LRR-ma 22/23 822 835 .. 1 14 [] 9.7 42
LRR-ma 23/23 846 859 .. 1 14 [] 7.8 93
Alignments of top-scoring domains:
LRR-ma: domain 1 of 23, from 60 to 73: score 4.6, E = 3.4e+02
*->lpsLeeLdLsnNrl<-*
+ + e+LdL +N++
gi|4049589 60 PRNAERLDLDRNNI 73
LRR-ma: domain 2 of 23, from 84 to 97: score 10.3, E = 33
*->lpsLeeLdLsnNrl<-*
l++L++L+L +N+
gi|4049589 84 LKNLRVLHLEDNQV 97
LRR-ma: domain 3 of 23, from 108 to 121: score 11.8, E = 17
*->lpsLeeLdLsnNrl<-*
l++Le+L+L+ N+l
gi|4049589 108 LKQLERLRLNKNKL 121
LRR-ma: domain 4 of 23, from 132 to 145: score 11.6, E = 19
*->lpsLeeLdLsnNrl<-*
p+L++LdLs N++
gi|4049589 132 TPKLTRLDLSENQI 145
LRR-ma: domain 5 of 23, from 156 to 169: score 4.9, E = 3e+02
*->lpsLeeLdLsnNrl<-*
+ ++L L nN++
gi|4049589 156 ITDVKNLQLDNNHI 169
LRR-ma: domain 6 of 23, from 180 to 193: score 9.3, E = 49
*->lpsLeeLdLsnNrl<-*
l Le+L L+nN++
gi|4049589 180 LRDLEILTLNNNNI 193
LRR-ma: domain 7 of 23, from 204 to 217: score 11.0, E = 24
*->lpsLeeLdLsnNrl<-*
+p++++L+L++N+l
gi|4049589 204 MPKIRTLRLHSNHL 217
LRR-ma: domain 8 of 23, from 306 to 319: score 1.8, E = 1.1e+03
*->lpsLeeLdLsnNrl<-*
+ + e++L +N++
gi|4049589 306 PEGIVEIRLEQNSI 319
LRR-ma: domain 9 of 23, from 330 to 343: score 7.2, E = 1.2e+02
*->lpsLeeLdLsnNrl<-*
++L+++d+s N++
gi|4049589 330 YKKLKRIDISKNQI 343
LRR-ma: domain 10 of 23, from 354 to 367: score 11.7, E = 18
*->lpsLeeLdLsnNrl<-*
l+sL++L L++N++
gi|4049589 354 LKSLTSLVLYGNKI 367
LRR-ma: domain 11 of 23, from 378 to 391: score 5.3, E = 2.6e+02
*->lpsLeeLdLsnNrl<-*
l sL+ L L+ N++
gi|4049589 378 LVSLQLLLLNANKI 391
LRR-ma: domain 12 of 23, from 402 to 415: score 7.8, E = 93
*->lpsLeeLdLsnNrl<-*
l++L L+L++N+l
gi|4049589 402 LQNLNLLSLYDNKL 415
LRR-ma: domain 13 of 23, from 426 to 439: score 9.3, E = 49
*->lpsLeeLdLsnNrl<-*
l+s+++L+L++N +
gi|4049589 426 LQSIQTLHLAQNPF 439
LRR-ma: domain 14 of 23, from 556 to 569: score 16.1, E = 0.86
*->lpsLeeLdLsnNrl<-*
lp+L++++LsnN++
gi|4049589 556 LPNLRKINLSNNKI 569
LRR-ma: domain 15 of 23, from 580 to 593: score 0.7, E = 1.6e+03
*->lpsLeeLdLsnNrl<-*
s +eL L +N+l
gi|4049589 580 AASVQELMLTGNQL 593
LRR-ma: domain 16 of 23, from 604 to 617: score 5.8, E = 2.1e+02
*->lpsLeeLdLsnNrl<-*
l+ L++L L++N +
gi|4049589 604 LSGLKTLMLRSNLI 617
LRR-ma: domain 17 of 23, from 628 to 641: score 8.6, E = 66
*->lpsLeeLdLsnNrl<-*
l+s + L+L++Nr+
gi|4049589 628 LSSVRLLSLYDNRI 641
LRR-ma: domain 18 of 23, from 652 to 665: score 4.6, E = 3.5e+02
*->lpsLeeLdLsnNrl<-*
l sL +++L +N +
gi|4049589 652 LVSLSTINLLSNPF 665
LRR-ma: domain 19 of 23, from 751 to 764: score 6.6, E = 1.5e+02
*->lpsLeeLdLsnNrl<-*
++ +eL+L +N+l
gi|4049589 751 PKDVTELYLEGNHL 764
LRR-ma: domain 20 of 23, from 774 to 787: score 12.5, E = 10
*->lpsLeeLdLsnNrl<-*
l +L+ +dLsnN++
gi|4049589 774 LRHLTLIDLSNNSI 787
LRR-ma: domain 21 of 23, from 798 to 811: score 12.8, E = 8.1
*->lpsLeeLdLsnNrl<-*
+++L +L Ls+Nrl
gi|4049589 798 MSHLSTLILSYNRL 811
LRR-ma: domain 22 of 23, from 822 to 835: score 9.7, E = 42
*->lpsLeeLdLsnNrl<-*
l sL++L L++N +
gi|4049589 822 LRSLRVLTLHGNDI 835
LRR-ma: domain 23 of 23, from 846 to 859: score 7.8, E = 93
*->lpsLeeLdLsnNrl<-*
l+sL +L L+ N l
gi|4049589 846 LTSLSHLALGTNPL 859
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Prosite
---------------------------------------------------------
| ppsearch (c) 1994 EMBL Data Library |
| based on MacPattern (c) 1990-1994 R. Fuchs |
---------------------------------------------------------
PROSITE pattern search started: Thu Jan 18 20:37:26 2001
Sequence file: tem27
----------------------------------------
Sequence gi|4049589|dbj|BAA35186.1| (1523 residues):
Matching pattern PS00001 ASN_GLYCOSYLATION:
72: NITR
192: NISR
563: NLSN
622: NDTF
784: NNSI
792: NYTF
797: NMSH
928: NGTC
1008: NATC
1025: NYTG
1181: NISL
1247: NQTL
1406: NDSA
Total matches: 13
Matching pattern PS00004 CAMP_PHOSPHO_SITE:
473: KRIS
Total matches: 1
Matching pattern PS00005 PKC_PHOSPHO_SITE:
132: TPK
209: TLR
318: SIK
466: SPR
480: SKK
630: SVR
722: SPR
739: SNK
824: SLR
864: SLR
900: THR
946: SYK
975: SHK
1067: SGK
1142: TCR
1173: SAK
1188: TDK
1258: TPK
1295: TDR
1492: SKR
Total matches: 20
Matching pattern PS00006 CK2_PHOSPHO_SITE:
77: TKMD
98: SVIE
136: TRLD
170: SCIE
398: TFQD
409: SLYD
486: SGSE
514: TIVD
545: SVLE
582: SVQE
635: SLYD
730: TCME
778: TLID
837: SVPE
842: SFND
885: SSPE
975: SHKD
1010: TCVD
1073: TDND
1121: SPCD
1167: SYVE
1188: TDKD
1232: TVND
1506: SFVE
Total matches: 24
Matching pattern PS00008 MYRISTYL:
7: GVGAAV
58: GIPRNA
175: GAFRAL
364: GNKITE
373: GLFDGL
461: GARCSS
575: GAFDGA
618: GCVSND
647: GAFTTL
686: GNPRCQ
713: GNEESS
761: GNHLTA
832: GNDISS
880: GIARCS
1236: GQFHSV
1257: GTPKSL
1280: GGIPTS
1281: GIPTST
1300: GGFHGC
1327: GVSPGC
1331: GCKSCT
1341: GLCRSV
1398: GGDLCD
1518: GCLACS
Total matches: 24
Matching pattern PS00010 ASX_HYDROXYL:
1011: CVDGINNYVCIC
1089: CVDTINGYTCTC
Total matches: 2
Matching pattern PS01185 CTCK_1:
1486: CCQPTRSKRRKYVFQCTDGSSFVEEVERHLECGCLAC
Total matches: 1
Matching pattern PS00022 EGF_1:
941: CACPYSYKGKDC
982: CSCPLGFEGQRC
1020: CICPPNYTGELC
1060: CECVPGYSGKLC
1098: CTCPQGFSGPFC
1143: CRCPPGFAGPRC
1353: CECRPGWTGPLC
1391: CKCAEGYGGDLC
1432: CLCQPGFSGEHC
Total matches: 9
Matching pattern PS01186 EGF_2:
982: CSCPLGFEGQRC
1060: CECVPGYSGKLC
1098: CTCPQGFSGPFC
1143: CRCPPGFAGPRC
1353: CECRPGWTGPLC
1391: CKCAEGYGGDLC
1432: CLCQPGFSGEHC
Total matches: 7
Matching pattern PS01187 EGF_CA:
996: NPDDCEDNDCENNATCVDGINNYVC
1074: DNDDCVAHKCRHGAQCVDTINGYTC
Total matches: 2
Matching pattern PS00029 LEUCINE_ZIPPER:
114: LRLNKNKLQVLPELLFQSTPKL
Total matches: 1
Matching pattern PS00290 IG_MHC:
261: YVCPAPH
Total matches: 1
Total no of hits in this sequence: 105
========================================
1314 pattern(s) searched in 1 sequence(s), 1523 residues.
Total no of hits in all sequences: 105.
Search time: 00:00 min
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Profile Search
L=0 11.9851 1316 pos. 1449 - 1523 PS01225|CTCK_2 C-terminal cystine knot profile.
#
# P 1 CRRTPVS---PIYFEYNGCTSSKPVRMAYCSGSCGDGAMYDVDANDLKHSCRCCQPERTE -32
# S 1449 CLGQVVReviRRQKGYASCATASKVPIMECRGGCGP---------------QCCQPTRSK -31
#
# P 58 TRQVRLHCPDGSTLTHSYRHIESCGCHRNCP -1
# S 1494 RRKYVFQCTDGSSFVEEVERHLECGCL-ACS -1
#
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with motif search against own library
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
argv[1]=P
argv[2]=-m /data/patterns/own/motif.fa
argv[4]=-seq tem27
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
SeqTyp=2 : PROTEIN search;
>APC D-Box is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 1523 units
>ER-GOLGI-traffic signal is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 1523 units
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~
Start with HMM-search search against own library
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm.lib
Sequence file: tem27
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm-f.lib
Sequence file: tem27
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
L. Aravind's signalling DB
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
(1523 letters)
Searching..................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
LRR Leucine rich repeats 147 1e-37
INSL Insulinase like Metallo protease domain 25 0.76
HOMEO Homeodomain (HTH DNa binding domain) 24 1.5
GAF GAF domain (Predicted Small-ligand binding domain) 23 2.7
CALMO Calmodulin like EF-hand domains 23 2.9
AAA AAA+ ATPase Module 23 4.5
KELCH Kelch repeat- beta propeller like domain 22 4.6
DSP Dual specificity protein phosphatase 22 4.8
HECT A ubiquitin conjugating enzyme domain 22 5.2
CBS cystathionine beta -synthase domain (A predicted ligand... 22 5.3
CALC Calcineurin like Phosphoesterase domain 22 5.6
ACTIN Actin ATPase/ Cytoskeletal ATPase domain 22 6.0
PDE cyclic NMP phosphodiesterase domain 22 7.5
UBA Ubiquitin pathway associated domain 22 8.6
MATH The Meprin associated TRAF homology domain 21 9.5
SAM Sterile alpha Motif domain (A protein-protein interacti... 21 9.5
>LRR Leucine rich repeats
Length = 339
Score = 147 bits (368), Expect = 1e-37
Identities = 72/358 (20%), Positives = 72/358 (20%), Gaps = 40/358 (11%)
Query: 80 DFAGLKNLRVLHLEDNQVSV--IERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTR 137
Sbjct: 3 ELSDLPRLRSVIVRDNNLKTAGIPTDIFR-MKDLTIIDLSRNQLREVPTNLEYAK-GSIV 60
Query: 138 LDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRIL 197
Sbjct: 61 LNLSYNNIETIPNSVCANLIDLLFLDLSNNKLDMLPPQ-IRRLSMLQSLKLSNNPLNHFQ 119
Query: 198 VTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQ 257
Sbjct: 120 LKQLPSMTSLSVLHMSNTNRTLDNIPPTLDD-MHNLRD----------VDFSENNLPIVP 168
Query: 258 KKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQN 317
Sbjct: 169 --EALFKLRNLRKLNLSGNKIEKLNMTEGE------------------WENLETLNMSHN 208
Query: 318 SIKAIPAGAFTQYKKLKRIDISKNQISDI-APDAFQGLKSLTSLVLYGNKITEIAKGLFD 376
Sbjct: 209 QLTVLP-DCVVKLTRLTKLYAANNQLTFEGIPSGIGKLIQLTVLHLSYNKLELVPEGIS- 266
Query: 377 GLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHL 434
Sbjct: 267 RCVKLQKLKLDHNRLITLP-EGIHLLPDLKVLDLHENENLVMPPKPNDARKKLAFYNI 323
Score = 141 bits (353), Expect = 6e-36
Identities = 76/353 (21%), Positives = 76/353 (21%), Gaps = 44/353 (12%)
Query: 515 IVDCSNQKLVRIPSHLPEY--VTDLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEV 572
Sbjct: 14 IVRDNNLKTAGIPTDIFRMKDLTIIDLSRNQLREVPTN--LEYAKGSIVLNLSYNNIETI 71
Query: 573 REGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVR 632
Sbjct: 72 PNSVCANLIDLLFLDLSNNKLDMLPPQ-IRRLSMLQSLKLSNNPLNHFQLKQLPSMTSLS 130
Query: 633 LLSLY-DNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQ 691
Sbjct: 131 VLHMSNTNRTLDNIPPTLDDMHNLRDVDFSEN------NLPIVPEALFKLR--------- 175
Query: 692 KPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGMP 751
Sbjct: 176 -------------NLRKLNLSGNKIEKLNMTEG---EWENLETLNMSHNQ-LTVLPDCVV 218
Query: 752 K--DVTELYLEGNHLT--AVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILS 807
Sbjct: 219 KLTRLTKLYAANNQLTFEGIPSGIGKLIQLTVLHLSYNKLELVPE-GISRCVKLQKLKLD 277
Query: 808 YNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLH 860
Sbjct: 278 HNRLITLP-EGIHLLPDLKVLDLHENENLVMPPKPNDARKKLAFYNIDFSLEH 329
Score = 25.0 bits (54), Expect = 0.65
Identities = 11/34 (32%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 45 VDCHGLGLRAVPRGIP--RNAERLDLDRNNITRI 76
Sbjct: 38 IDLSRNQLREVPTNLEYAKGSIVLNLSYNNIETI 71
Score = 24.6 bits (53), Expect = 1.1
Identities = 10/27 (37%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 52 LRAVPRGIPR--NAERLDLDRNNITRI 76
Sbjct: 258 LELVPEGISRCVKLQKLKLDHNRLITL 284
>INSL Insulinase like Metallo protease domain
Length = 433
Score = 24.9 bits (54), Expect = 0.76
Identities = 20/112 (17%), Positives = 20/112 (17%), Gaps = 14/112 (12%)
Query: 1117 LLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGF---AGPRCEK---------LITVNFVG 1164
Sbjct: 15 VLTAQELYIRDLPNGAKLIVKPRDDTEAVALHVWFRVGSVYEKYDEKGMAHFLEHMLFNG 74
Query: 1165 KDSYVELASAKVRPQANISLQVATDKDNGILLYKGDND--PLALELYQGHVR 1214
Sbjct: 75 TEKYKYGEIDRIIESLGGNINAGTSKDYTYYHVEIAHPYWKQALEVLYQLTM 126
>HOMEO Homeodomain (HTH DNa binding domain)
Length = 65
Score = 24.0 bits (52), Expect = 1.5
Identities = 7/47 (14%), Positives = 7/47 (14%), Gaps = 10/47 (21%)
Query: 109 KQLERLRLNKNKLQVLPELLFQSTPKLTR---------LDLSENQIQ 146
Sbjct: 5 RRKRRVLFSQAQVYEL-ERRFKQQKYLSAPEREHLASMIHLTPTQVK 50
>GAF GAF domain (Predicted Small-ligand binding domain)
Length = 160
Score = 23.0 bits (49), Expect = 2.7
Identities = 14/49 (28%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 1052 IPLDKGFSCECVPGY---SGKLCETDNDDCVAHKCRHGAQCVDTINGYT 1097
Sbjct: 62 FPLDMG-----VVGHVALSKKIVNVPN----TEEDEHFCDFVDTLTEYQ 101
>CALMO Calmodulin like EF-hand domains
Length = 147
Score = 23.2 bits (49), Expect = 2.9
Identities = 14/96 (14%), Positives = 14/96 (14%), Gaps = 18/96 (18%)
Query: 139 DLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRIL- 197
Sbjct: 4 NLTEEQIAEF-KEAFA--------LFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMN 54
Query: 198 --------VTSFNHMPKIRTLRLHSNHLYCDCHLAW 225
Sbjct: 55 EIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAF 90
>AAA AAA+ ATPase Module
Length = 298
Score = 22.5 bits (47), Expect = 4.5
Identities = 13/107 (12%), Positives = 13/107 (12%), Gaps = 3/107 (2%)
Query: 480 SKKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRL 539
Sbjct: 152 GSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKI 211
Query: 540 NDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQEL 586
Sbjct: 212 EFPPPNEEARLDILKIH--SRKMNLTRGINLR-KIAELMPGASGAEV 255
>KELCH Kelch repeat- beta propeller like domain
Length = 319
Score = 22.2 bits (47), Expect = 4.6
Identities = 5/67 (7%), Positives = 5/67 (7%), Gaps = 2/67 (2%)
Query: 61 RNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNK 120
Sbjct: 190 PKVQCYDQCENRWTVPATCPQPWRYTAAAVL--GNQIFIMGGDTEFSACSAYKFNSETYQ 247
Query: 121 LQVLPEL 127
Sbjct: 248 WTKVGDV 254
>DSP Dual specificity protein phosphatase
Length = 185
Score = 22.2 bits (47), Expect = 4.8
Identities = 10/46 (21%), Positives = 10/46 (21%), Gaps = 2/46 (4%)
Query: 1248 QTLNLVVDKGTPKSLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQ 1293
Sbjct: 10 QDLNDLLSDGSG--CYSLPSQPCNEVTPRIYVGNASVAQDIPKLQK 53
>HECT A ubiquitin conjugating enzyme domain
Length = 255
Score = 22.1 bits (47), Expect = 5.2
Identities = 16/78 (20%), Positives = 16/78 (20%), Gaps = 11/78 (14%)
Query: 370 IAKGLFDG-LVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQS 428
Sbjct: 88 MGVAIRTKKPLDLHLAPLVWKQLCCVPL-TLEDLEEVDL--LYVQTLNSI---LHIEDSG 141
Query: 429 IQTL----HLAQNPFVCD 442
Sbjct: 142 ITEESFHEMIPLDSFVGQ 159
>CBS cystathionine beta -synthase domain (A predicted ligand binding domain)
Length = 214
Score = 22.3 bits (47), Expect = 5.3
Identities = 4/72 (5%), Positives = 4/72 (5%), Gaps = 5/72 (6%)
Query: 135 LTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTL----NN 190
Sbjct: 112 VRNCDVVKT-LAKLYEIPVYKIFKELHNHIGDISWEELMEAAAVVTKRMTGEDITPQEYE 170
Query: 191 NNISRILVTSFN 202
Sbjct: 171 ERIKKTTFGKAI 182
>CALC Calcineurin like Phosphoesterase domain
Length = 274
Score = 22.1 bits (46), Expect = 5.6
Identities = 17/146 (11%), Positives = 17/146 (11%), Gaps = 10/146 (6%)
Query: 164 LDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHL 223
Sbjct: 126 LDSQVYGVPHGQLSQHQLDLLKETLGKNPERYTLVVLHHH------LLPTNSAWLDQHNL 179
Query: 224 AWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSP 283
Sbjct: 180 RNSHELAEVLAPFTNVKAILYGHIHQEVNSEWNGYQVMATPATCIQF--KPDCQYFSLDT 237
Query: 284 CTCSNNIVDC--RGKGLMEIPANLPE 307
Sbjct: 238 LQPGWREIELHSDGSIRTEVKRIQQA 263
>ACTIN Actin ATPase/ Cytoskeletal ATPase domain
Length = 376
Score = 22.1 bits (47), Expect = 6.0
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 1176 VRPQANISLQVATDKDNGILLYKGDNDPLALELYQGHV 1213
Sbjct: 135 VAIQAVLSL-YASGRTTGIVLDSGDGVSHTVPIYEGDA 171
>PDE cyclic NMP phosphodiesterase domain
Length = 350
Score = 21.6 bits (45), Expect = 7.5
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 535 TDLRLNDNEVSVLE---ATGIFKKLPNLR---KINLSNNKIKEVREGAFDGAASVQELML 588
Sbjct: 124 TELSLEYNDISVLENHHAMLTFKILRNSECNILEGLNEDQYKELRRSV------VQLILA 177
Query: 589 TGNQLETVHGRVFR 602
Sbjct: 178 TDMQNHFEHTNKFQ 191
>UBA Ubiquitin pathway associated domain
Length = 255
Score = 21.6 bits (45), Expect = 8.6
Identities = 9/42 (21%), Positives = 9/42 (21%), Gaps = 1/42 (2%)
Query: 92 LEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTP 133
Sbjct: 21 RNETIERIMEMG-YQREEVERALRAAFNNPDRAVEYLLMGIP 61
>MATH The Meprin associated TRAF homology domain
Length = 209
Score = 21.4 bits (45), Expect = 9.5
Identities = 5/36 (13%), Positives = 5/36 (13%)
Query: 543 EVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFD 578
Sbjct: 160 EVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWE 195
>SAM Sterile alpha Motif domain (A protein-protein interaction domain)
Length = 65
Score = 21.3 bits (45), Expect = 9.5
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 184 EILTLNNNNISRILVTSFNHMPKI 207
Sbjct: 33 ELLHLERRDLKDLGVTKVGHMKRI 56
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 105
Number of sequences better than 10.0: 16
Number of calls to ALIGN: 19
Length of query: 1523
Total length of test sequences: 20182
Effective length of test sequences: 16435.0
Effective search space size: 24454913.2
Initial X dropoff for ALIGN: 25.0 bits
Y. Wolf's SCOP PSSM
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= gi|4049589|dbj|BAA35186.1| Slit-3 protein [Homo sapiens]
(1523 letters)
Searching.................................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
gi|1881738 [246..599] Leucine-rich repeats 116 3e-27
gi|132575 [1..456] Leucine-rich repeats 113 3e-26
gi|1082610 [223..548] Leucine-rich repeats 92 7e-20
gi|2623618 [35..332] Leucine-rich repeats 92 7e-20
gi|1418519 [191..423] Leucine-rich repeats 77 2e-15
gi|128081 [13..98] Neurophysin II 33 0.038
gi|135227 [17..277] Restriction endonucleases 30 0.27
gi|2039378 [21..454] PLP-dependent transferases 29 0.38
gi|2501021 [11..154] OB-fold 28 1.5
gi|417837 [59..431] Acid proteases 27 2.5
gi|1788898 [36..308] Periplasmic binding protein-like I 27 2.5
gi|1175369 [257..504] Nucleotidyltransferases 26 3.5
gi|1518938 [387..612] Heat shock protein 70kD (HSP70), C-ter... 26 3.6
gi|2493473 [2..191] EF Hand-like 26 3.9
gi|1778568 [354..541] Heat shock protein 70kD (HSP70), C-ter... 26 4.8
gi|1790450 [741..896] Flavodoxin-like 26 5.2
gi|2130182 [8..348] Protein kinases (PK), catalytic core 26 5.7
gi|2496715 [53..359] NAD(P)-binding Rossmann-fold domains 26 6.0
gi|1942958 [8..338] ATP pyrophoshatases 25 6.0
gi|2665705 [26..489] Periplasmic binding protein-like II 26 6.3
gi|2127787 [36..400] Periplasmic binding protein-like I 25 6.4
gi|1943840 [7..213] Protein kinases (PK), catalytic core 25 6.4
gi|462182 [68..563] alpha/beta-Hydrolases 25 6.5
gi|90456 [248..528] Nucleotidyltransferases 25 7.0
gi|1572759 [30..280] Trypsin-like serine proteases 25 8.4
gi|1169087 [44..365] Cysteine proteinases 25 8.6
gi|1750128 [252..391] A domain of alpha and beta subunits of... 25 9.6
gi|730289 [27..419] Single-stranded right-handed beta-helix 25 9.8
>gi|1881738 [246..599] Leucine-rich repeats
Length = 354
Score = 116 bits (288), Expect = 3e-27
Identities = 27/363 (7%), Positives = 27/363 (7%), Gaps = 47/363 (12%)
Query: 61 RNAERLDLDRNNITRITKMDFAGL-KNLRVLHLEDNQVS-----VIERGAFQDLKQLERL 114
Sbjct: 13 LVLSRVEGTASAFEELGQAIAKNRNSALTSIDWSNNLIKDAGVAALAAAVASMGHGLTSI 72
Query: 115 RLNKNKLQVLPELL--------FQSTPKLTRLDLSENQIQGIPRKAFRGIT----DVKNL 162
Sbjct: 73 SLKGGDATKKGTVALCTAFKKNVEMSRTLTVLNLAGNRLDSDGTSALAAFVSGPNALQTL 132
Query: 163 QLDNNHISCIED--GAFRALRDLEILTLNNNNISRILVTSFNH----MPKIRTLRLHSNH 216
Sbjct: 133 NISGTAANLEMLLPAVMRGCTELEKFNISHNKVTAKTGPELKKFLQSCGRLSELHMRDTA 192
Query: 217 LYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNAN 276
Sbjct: 193 VPVQVVRDVIKAIIGNNFITDFQLDL---AANKLGVLGANMLAGLAAEITTIKSLDLTDN 249
Query: 277 SISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRI 336
Sbjct: 250 DFGDEGMSIIADGL-------------CHNSSLRELHLGDNWTRNKTKARSQAVDNLIEL 296
Query: 337 DISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRV 396
Sbjct: 297 ISSECPLHKLDL-------SCKVADNQIKTDILPFIYSLATNDTLKELDISGNAMGDKVG 349
Query: 397 NTF 399
Sbjct: 350 IAL 352
Score = 108 bits (267), Expect = 7e-25
Identities = 42/352 (11%), Positives = 42/352 (11%), Gaps = 46/352 (13%)
Query: 535 TDLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVR-----EGAFDGAASVQELMLT 589
Sbjct: 16 SRVEGTASAFEELGQAIAKNRNSALTSIDWSNNLIKDAGVAALAAAVASMGHGLTSISLK 75
Query: 590 GNQLETVHGRVFRG--------LSGLKTLMLRSNLIGCVSNDTFAG----LSSVRLLSLY 637
Sbjct: 76 GGDATKKGTVALCTAFKKNVEMSRTLTVLNLAGNRLDSDGTSALAAFVSGPNALQTLNIS 135
Query: 638 DNRITT--ITPGAFTTLVSLSTINLLSNPFN---CNCHLAWLGKWLRKRRIVSGNPRCQK 692
Sbjct: 136 GTAANLEMLLPAVMRGCTELEKFNISHNKVTAKTGPELKKFLQSCGRLSELHMRDTAVPV 195
Query: 693 ---PFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRG 749
Sbjct: 196 QVVRDVIKAIIGNNFITDFQLDLAANKLGVLGANMLAGLAAEITTIKSLDL--------- 246
Query: 750 MPKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYN 809
Sbjct: 247 -----TDNDFGDEGMSIIADGLCHNSSLRELHLGDNWTRNKTKARSQAVDNLIELISSEC 301
Query: 810 RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHC 861
Sbjct: 302 PLHKLDL-------SCKVADNQIKTDILPFIYSLATNDTLKELDISGNAMGD 346
Score = 31.2 bits (69), Expect = 0.12
Identities = 5/61 (8%), Positives = 5/61 (8%), Gaps = 1/61 (1%)
Query: 397 NTFQDLQNLNLLSLYDNKLQTI-SKGLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDN 455
Sbjct: 7 NTKMEELVLSRVEGTASAFEELGQAIAKNRNSALTSIDWSNNLIKDAGVAALAAAVASMG 66
Query: 456 P 456
Sbjct: 67 H 67
Score = 28.8 bits (63), Expect = 0.68
Identities = 13/116 (11%), Positives = 13/116 (11%), Gaps = 14/116 (12%)
Query: 400 QDLQNLNLLSLYDNKLQTISKGLFAP----LQSIQTLHLAQNPFVCDCHLKWLAD----- 450
Sbjct: 96 EMSRTLTVLNLAGNRLDSDGTSALAAFVSGPNALQTLNISGTAANLEMLLPAVMRGCTEL 155
Query: 451 ---YLQDNPIETSGAR--CSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFM 501
Sbjct: 156 EKFNISHNKVTAKTGPELKKFLQSCGRLSELHMRDTAVPVQVVRDVIKAIIGNNFI 211
Score = 28.4 bits (62), Expect = 0.96
Identities = 11/60 (18%), Positives = 11/60 (18%), Gaps = 3/60 (5%)
Query: 400 QDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPF-VCDCHLKWLADYLQDNPIE 458
Sbjct: 264 CHNSSLRELHLGDNWTRNKTKARSQAVDNLIELISSECPLHKLDLSCKVA--DNQIKTDI 321
>gi|132575 [1..456] Leucine-rich repeats
Length = 456
Score = 113 bits (279), Expect = 3e-26
Identities = 68/526 (12%), Positives = 68/526 (12%), Gaps = 95/526 (18%)
Query: 335 RIDISKNQISD-IAPDAFQGLKSLTSLVLYGNKITEIAKGL----FDGLVSLQLLLLNAN 389
Sbjct: 2 SLDIQCEQLSDARWTELLPLIQQYQVVRLDDCGLTEVRCKDIRSAIQANPALTELSLRTN 61
Query: 390 KINCLRVNTFQDL-----QNLNLLSLYDNKLQTISKG----LFAPLQSIQTLHLAQNPFV 440
Sbjct: 62 ELGDAGVGLVLQGLQNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTLRELHLNDNPLG 121
Query: 441 CDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECF 500
Sbjct: 122 DEGLKLLCEGLRDPQCR-----------------LEKLQLEYCNLTATSCEPLASVLRVK 164
Query: 501 MDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLND-NEVSVLEATGIFKKLPNL 559
Sbjct: 165 PDFKELVLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASL 224
Query: 560 RKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGC 619
Sbjct: 225 QELDLGSN-------------------KLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTA 265
Query: 620 VSNDTFAG----LSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLG 675
Sbjct: 266 EGCKDLCRVLRAKQSLKELSLAGNELKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASC 325
Query: 676 KWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETV 735
Sbjct: 326 PHF-----------CSVLTKNSSLFELQMSSNPLGDSGVVELCKALGYPDTV-------- 366
Query: 736 VRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSIS-----ML 790
Sbjct: 367 -------LRVL------WLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDNGVLQL 413
Query: 791 TNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDIS 836
Sbjct: 414 LESLKQPSCILQQLVLYDIYWTDEVED---QLRALEEERPSLRIIS 456
Score = 68.3 bits (164), Expect = 8e-13
Identities = 32/200 (16%), Positives = 32/200 (16%), Gaps = 23/200 (11%)
Query: 65 RLDLDRNNIT-RITKMDFAGLKNLRVLHLEDNQVSVIERG----AFQDLKQLERLRLNKN 119
Sbjct: 2 SLDIQCEQLSDARWTELLPLIQQYQVVRLDDCGLTEVRCKDIRSAIQANPALTELSLRTN 61
Query: 120 KLQVLP-----ELLFQSTPKLTRLDLSENQIQGIP----RKAFRGITDVKNLQLDNNHIS 170
Sbjct: 62 ELGDAGVGLVLQGLQNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTLRELHLNDNPLG 121
Query: 171 C-----IEDGAFRALRDLEILTLNNNNISRILV----TSFNHMPKIRTLRLHSNHLYCDC 221
Sbjct: 122 DEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKELVLSNNDFHEAG 181
Query: 222 HLAWLSDWLRQRRTVGQFTL 241
Sbjct: 182 IHTLCQGLKDSACQLESLKL 201
Score = 60.5 bits (144), Expect = 2e-10
Identities = 24/199 (12%), Positives = 24/199 (12%), Gaps = 28/199 (14%)
Query: 44 SVDCHGLGLRAVPRGIPR--NAERLDLDRNNITRITKMDFAGLK-----NLRVLHLEDNQ 96
Sbjct: 260 DCDVTAEGCKDLCRVLRAKQSLKELSLAGNELKDEGAQLLCESLLEPGCQLESLWVKTCS 319
Query: 97 VSVIE----RGAFQDLKQLERLRLNKNKLQVLP-----ELLFQSTPKLTRLDLSENQIQG 147
Sbjct: 320 LTAASCPHFCSVLTKNSSLFELQMSSNPLGDSGVVELCKALGYPDTVLRVLWLGDCDVTD 379
Query: 148 IPRK----AFRGITDVKNLQLDNNHISC-----IEDGAFRALRDLEILTLNNNNISRILV 198
Sbjct: 380 SGCSSLATVLLANRSLRELDLSNNCMGDNGVLQLLESLKQPSCILQQLVLYDIYWTDEVE 439
Query: 199 TSFNHMPKIRTLRLHSNHL 217
Sbjct: 440 DQLRALEE---ERPSLRII 455
>gi|1082610 [223..548] Leucine-rich repeats
Length = 326
Score = 91.8 bits (225), Expect = 7e-20
Identities = 42/350 (12%), Positives = 42/350 (12%), Gaps = 52/350 (14%)
Query: 68 LDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLK-------------QLERL 114
Sbjct: 2 LSTEAALTLCH-LLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDL 60
Query: 115 RLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIED 174
Sbjct: 61 FSPLPILELTRA-IVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGDEEIP---- 115
Query: 175 GAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRR 234
Sbjct: 116 --ENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYN 173
Query: 235 TVGQFTLCMAPVHLRGFNVADVQKK-EYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDC 293
Sbjct: 174 LALKR------LSFHDMNLADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLP----- 222
Query: 294 RGKGLMEIPANLPEGIVEIRLEQNSIKAIPA------GAFTQYKKLKRIDISKNQISDIA 347
Sbjct: 223 ---EMVAAMKGNS-TLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDG 278
Query: 348 PDAFQ------GLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKI 391
Sbjct: 279 LLEFAKRLERWGRGAFGHLRLFQNWLDQD---AVTAREAIRRLRATCHVV 325
Score = 80.5 bits (196), Expect = 2e-16
Identities = 46/344 (13%), Positives = 46/344 (13%), Gaps = 64/344 (18%)
Query: 539 LNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHG 598
Sbjct: 2 LSTEAALTLCH--LLSSWVSLESLTLSYNGLGSNIFRLLDSLRALSGQAGC--RLRALH- 56
Query: 599 RVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTI 658
Sbjct: 57 --------LSDLFSPLPIL-ELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSH 107
Query: 659 NLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESS 718
Sbjct: 108 IIGDEEIPE-NCLEQL-EMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLV 165
Query: 719 CQLSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLT---AVPRELSALR 775
Sbjct: 166 LQTLKEYNLA-------------------------LKRLSFHDMNLADCQSEVLFLLQNL 200
Query: 776 HLTLIDLSNNSISMLTN--------YTFSNMSHLSTLILSYNRLRCIP------VHAFNG 821
Sbjct: 201 TLQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDS 260
Query: 822 LRSLRVLTLHGNDISSVPEGSFND------LTSLSHLALGTNPL 859
Sbjct: 261 SSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWL 304
Score = 33.0 bits (74), Expect = 0.037
Identities = 22/169 (13%), Positives = 22/169 (13%), Gaps = 30/169 (17%)
Query: 397 NTFQDLQNLNLLSLYDNKLQTISK--GLFAPLQSIQTLHLAQNPFVCDCHLKWLAD---- 450
Sbjct: 168 TLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAA 227
Query: 451 ----------YLQDNPIETSG----ARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFS 496
Sbjct: 228 MKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLE 287
Query: 497 SECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVS 545
Sbjct: 288 RWGRGAF----------GHLRLFQNWLDQDAVTAREAIRRLRATCHVVS 326
Score = 29.1 bits (64), Expect = 0.53
Identities = 7/51 (13%), Positives = 7/51 (13%)
Query: 392 NCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCD 442
Sbjct: 109 IGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASP 159
>gi|2623618 [35..332] Leucine-rich repeats
Length = 298
Score = 91.9 bits (225), Expect = 7e-20
Identities = 33/314 (10%), Positives = 33/314 (10%), Gaps = 49/314 (15%)
Query: 151 KAFRGITDVKNLQLDNNHISCIEDGAFRA----LRDLEILTLNNNNISRILVTSFNHMPK 206
Sbjct: 8 AAVEACEGIQSLKLNGNTIGVEAAQALAKALESKPQFQRARWSDMFTGRLRSEIPPALMS 67
Query: 207 IRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAP 266
Sbjct: 68 LGAGIMTAGAHLVEIDLSD------------NAFGPDGVKAVRELLESSSCYSLREMRFN 115
Query: 267 HSEPPSCNANSISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIP--- 323
Sbjct: 116 N------------NGLGIGGKLMAEALITCHEKSTKAGKPLALKVFIAGRNRLENPGATV 163
Query: 324 -AGAFTQYKKLKRIDISKNQISDIA----PDAFQGLKSLTSLVLYGNKITEIAK----GL 374
Sbjct: 164 LAKAFKIIGTLEEIALPQNGINYEGITALAEAVEYSHNLKILNLNDNTFTARGAKPMAKA 223
Query: 375 FDGLVSLQLLLLNANKI-----NCLRVNTFQDLQNLNLLSLYDNKLQTISK----GLFAP 425
Sbjct: 224 IKNLSKLEVINFGDCLVRSEGADAIANSLREGVPSLKELNLAFGEIKKEAAVRVAESMDT 283
Query: 426 LQSIQTLHLAQNPF 439
Sbjct: 284 KPHLTLLDLNGNNI 297
Score = 87.2 bits (213), Expect = 2e-18
Identities = 39/290 (13%), Positives = 39/290 (13%), Gaps = 29/290 (10%)
Query: 599 RVFRGLSGLKTLMLRSNLIGCVSNDTF----AGLSSVRLLSLYDNRITTITPGAFTTLVS 654
Sbjct: 8 AAVEACEGIQSLKLNGNTIGVEAAQALAKALESKPQFQRARWSDMFTGRLRSEIPPALMS 67
Query: 655 LSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTC-DG 713
Sbjct: 68 LGAGIMTAGAHLVEIDLSDNAFGPDGVKAVRELLESSSCYSLREMRFNNNGLGIGGKLMA 127
Query: 714 NEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGMP------KDVTELYLEGNHLT-- 765
Sbjct: 128 EALITCHEKSTKAGKPLALKVFIAGRNRLENPGATVLAKAFKIIGTLEEIALPQNGINYE 187
Query: 766 ---AVPRELSALRHLTLIDLSNNSISMLTNYT----FSNMSHLSTLILSYNRLR-----C 813
Sbjct: 188 GITALAEAVEYSHNLKILNLNDNTFTARGAKPMAKAIKNLSKLEVINFGDCLVRSEGADA 247
Query: 814 IPVHAFNGLRSLRVLTLHGNDISSVP----EGSFNDLTSLSHLALGTNPL 859
Sbjct: 248 IANSLREGVPSLKELNLAFGEIKKEAAVRVAESMDTKPHLTLLDLNGNNI 297
Score = 53.3 bits (126), Expect = 2e-08
Identities = 17/124 (13%), Positives = 17/124 (13%), Gaps = 8/124 (6%)
Query: 34 CPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLE 93
Sbjct: 93 GVKAVRELLESSSCYSLREMRFNNNGLGIGGKLMAEALITCHEKSTKAGKPLALKVFIAG 152
Query: 94 DNQVSVIER----GAFQDLKQLERLRLNKNKLQVLPELL----FQSTPKLTRLDLSENQI 145
Sbjct: 153 RNRLENPGATVLAKAFKIIGTLEEIALPQNGINYEGITALAEAVEYSHNLKILNLNDNTF 212
Query: 146 QGIP 149
Sbjct: 213 TARG 216
Score = 45.9 bits (107), Expect = 5e-06
Identities = 10/81 (12%), Positives = 10/81 (12%), Gaps = 5/81 (6%)
Query: 72 NITRITKMDFAGLKNLRVLHLEDNQVSVIERGAF----QDLKQLERLRLNKNKLQVLPEL 127
Sbjct: 2 DARDVVA-AVEACEGIQSLKLNGNTIGVEAAQALAKALESKPQFQRARWSDMFTGRLRSE 60
Query: 128 LFQSTPKLTRLDLSENQIQGI 148
Sbjct: 61 IPPALMSLGAGIMTAGAHLVE 81
Score = 43.2 bits (100), Expect = 3e-05
Identities = 16/74 (21%), Positives = 16/74 (21%), Gaps = 9/74 (12%)
Query: 81 FAGLKNLRVLHLEDNQVSVIERG-----AFQDLKQLERLRLNKNKLQVLPELLFQST--- 132
Sbjct: 224 IKNLSKLEVINFGDCLVRSEGADAIANSLREGVPSLKELNLAFGEIKKEAAVRVAESMDT 283
Query: 133 -PKLTRLDLSENQI 145
Sbjct: 284 KPHLTLLDLNGNNI 297
Score = 36.2 bits (82), Expect = 0.004
Identities = 16/141 (11%), Positives = 16/141 (11%), Gaps = 7/141 (4%)
Query: 460 SGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCS 519
Sbjct: 50 SDMFTGRLRSEIPPALMSLGAGIM--TAGAHLVEIDLSDNAFGPDGVKAVRELLESSSCY 107
Query: 520 NQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVRE----G 575
Sbjct: 108 SLREMRFNNNGLGIGGKLMAEALITCHEKST-KAGKPLALKVFIAGRNRLENPGATVLAK 166
Query: 576 AFDGAASVQELMLTGNQLETV 596
Sbjct: 167 AFKIIGTLEEIALPQNGINYE 187
Score = 33.8 bits (76), Expect = 0.022
Identities = 16/95 (16%), Positives = 16/95 (16%), Gaps = 15/95 (15%)
Query: 514 TIVDCSNQKLVRIPS-HLPEYVTD------LRLNDNEVSVLEATGI----FKKLPNLRKI 562
Sbjct: 203 KILNLNDNTFTARGAKPMAKAIKNLSKLEVINFGDCLVRSEGADAIANSLREGVPSLKEL 262
Query: 563 NLSNNKIKEVR----EGAFDGAASVQELMLTGNQL 593
Sbjct: 263 NLAFGEIKKEAAVRVAESMDTKPHLTLLDLNGNNI 297
Score = 30.3 bits (67), Expect = 0.22
Identities = 4/25 (16%), Positives = 4/25 (16%)
Query: 553 FKKLPNLRKINLSNNKIKEVREGAF 577
Sbjct: 10 VEACEGIQSLKLNGNTIGVEAAQAL 34
>gi|1418519 [191..423] Leucine-rich repeats
Length = 233
Score = 77.3 bits (188), Expect = 2e-15
Identities = 32/199 (16%), Positives = 32/199 (16%), Gaps = 30/199 (15%)
Query: 61 RNAERLDLDRNNIT----RITKMDFAGLKNLRVLHLEDNQVSVIE----RGAFQDLKQLE 112
Sbjct: 36 ASLTCLHLENTQMSGKNLLVLICALKNNTGLRELYLGDNGLQPTDGSHIYQLITSNSSLQ 95
Query: 113 RLRLNKNK---------LQVLPELLFQSTPKLTRLDLSENQIQGIPRK----AFRGITDV 159
Sbjct: 96 LLDLRNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKI 155
Query: 160 KNLQLDNNHISCIED----GAFRALRDLEILTLNNNNISRI----LVTSFNHMPKIRTLR 211
Sbjct: 156 ETLNIGNNNLGVEGIARLKPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVD 215
Query: 212 LHSNHLYCDCHLAWLSDWL 230
Sbjct: 216 IRDNPI-ALAGLLALHSAM 233
Score = 76.1 bits (185), Expect = 4e-15
Identities = 26/238 (10%), Positives = 26/238 (10%), Gaps = 29/238 (12%)
Query: 625 FAGLSSVRLLSLYDNRITTITP------GAFTTLVSLSTINLLSNPFNCNCHLAWLGKWL 678
Sbjct: 2 IRHAVSLQMLNLRYTNLNDRSIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLICALK 61
Query: 679 RKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRC 738
Sbjct: 62 NNTGLRELYLGDNGLQPTDGSHIYQLITSNSSLQLLDLRNNSIGDSGVRHIC-------- 113
Query: 739 SNKGLRALPRGMPKDVTELYLEGNHLT-----AVPRELSALRHLTLIDLSNNSISMLTNY 793
Sbjct: 114 --DGLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKIETLNIGNNNLGVEGIA 171
Query: 794 TF----SNMSHLSTLILSYNRLRCIPVHA----FNGLRSLRVLTLHGNDISSVPEGSF 843
Sbjct: 172 RLKPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVDIRDNPIALAGLLAL 229
Score = 57.4 bits (137), Expect = 2e-09
Identities = 31/237 (13%), Positives = 31/237 (13%), Gaps = 20/237 (8%)
Query: 200 SFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKK 259
Sbjct: 1 SIRHAVSLQMLNLRYTNL-NDRSIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI-- 57
Query: 260 EYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSI 319
Sbjct: 58 CALKNNTGLRELYLGDNGLQPTDGSHIYQLITSNSSLQLLDLRNNSIGDSG----VRHIC 113
Query: 320 KAIPAGAFTQYKKLKRIDISKNQISDIA----PDAFQGLKSLTSLVLYGNKITEIAK--- 372
Sbjct: 114 DGLRHREAVEKSSLSAMVLWNNNVTGASMDSLAEALIENTKIETLNIGNNNLGVEGIARL 173
Query: 373 -GLFDGLVSLQLLLLNANKINCLRV----NTFQDLQNLNLLSLYDNKLQ-TISKGLF 423
Sbjct: 174 KPALASNSHLHRLGLQNTGINCEGAIILAECIADNIALLRVDIRDNPIALAGLLALH 230
Score = 42.2 bits (98), Expect = 6e-05
Identities = 26/215 (12%), Positives = 26/215 (12%), Gaps = 28/215 (13%)
Query: 426 LQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRC 485
Sbjct: 35 SASLTCLHLENTQMSGKNLLVLICA-------------LKNNTGLRELYLGDNGLQPTDG 81
Query: 486 SGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVS 545
Sbjct: 82 SHIYQLITSNSSLQLLDL---RNNSIGDSGVRHICDGLRHREAVEKSSLSAMVLWNNNVT 138
Query: 546 VLEATGI---FKKLPNLRKINLSNNKIKEVRE----GAFDGAASVQELMLTGNQLETVHG 598
Sbjct: 139 GASMDSLAEALIENTKIETLNIGNNNLGVEGIARLKPALASNSHLHRLGLQNTGINCEGA 198
Query: 599 R----VFRGLSGLKTLMLRSNLI-GCVSNDTFAGL 628
Sbjct: 199 IILAECIADNIALLRVDIRDNPIALAGLLALHSAM 233
Score = 31.7 bits (71), Expect = 0.084
Identities = 6/33 (18%), Positives = 6/33 (18%)
Query: 553 FKKLPNLRKINLSNNKIKEVREGAFDGAASVQE 585
Sbjct: 2 IRHAVSLQMLNLRYTNLNDRSIPALCKMARAQP 34
Score = 29.4 bits (65), Expect = 0.39
Identities = 4/34 (11%), Positives = 4/34 (11%)
Query: 81 FAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERL 114
Sbjct: 2 IRHAVSLQMLNLRYTNLNDRSIPALCKMARAQPS 35
Score = 29.0 bits (64), Expect = 0.53
Identities = 4/34 (11%), Positives = 4/34 (11%)
Query: 129 FQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNL 162
Sbjct: 2 IRHAVSLQMLNLRYTNLNDRSIPALCKMARAQPS 35
Score = 25.1 bits (54), Expect = 8.7
Identities = 5/21 (23%), Positives = 5/21 (23%)
Query: 176 AFRALRDLEILTLNNNNISRI 196
Sbjct: 1 SIRHAVSLQMLNLRYTNLNDR 21
>gi|128081 [13..98] Neurophysin II
Length = 86
Score = 32.8 bits (73), Expect = 0.038
Identities = 11/85 (12%), Positives = 11/85 (12%), Gaps = 6/85 (7%)
Query: 978 DGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDH 1037
Sbjct: 7 LRQCLPCGPGGQGRCFGPSICCADALGCFVGTAEAL------RCQEENYLPSPCQSGQKP 60
Query: 1038 CVPELNLCQHEAKCIPLDKGFSCEC 1062
Sbjct: 61 CGSGGRCAANGVCCNDESCVIEPEC 85
Score = 26.6 bits (57), Expect = 3.3
Identities = 11/83 (13%), Positives = 11/83 (13%), Gaps = 7/83 (8%)
Query: 1353 CECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMCKCAEGYGGDLCDNKNDSANAC 1412
Sbjct: 11 LPCGPGGQGRCFGPSI------CCADALGCFVGTAEALRCQEENYLPSPCQSGQKPCG-S 63
Query: 1413 SAFKCHHGQCHISDQGEPYCLCQ 1435
Sbjct: 64 GGRCAANGVCCNDESCVIEPECR 86
>gi|135227 [17..277] Restriction endonucleases
Length = 261
Score = 30.2 bits (67), Expect = 0.27
Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 567 NKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLML 612
Sbjct: 101 KDIINIRNGLLVGKRGDQDLMAAGNAIERSH----KNISEIANFML 142
>gi|2039378 [21..454] PLP-dependent transferases
Length = 434
Score = 29.5 bits (65), Expect = 0.38
Identities = 14/127 (11%), Positives = 14/127 (11%), Gaps = 12/127 (9%)
Query: 1 MAPGWAGVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGLGLRAVPRGIP 60
Sbjct: 296 IGNGFPLG--AVVTSKEIADSFNKSLYFNTYGGNPLASVVGKAVLE--VIEEEKLQENSA 351
Query: 61 RNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERL--RLNK 118
Sbjct: 352 VVGDYF------LKQLAAIDDATIGDVRGKGLMIGVELIDEQGKPLAAAKTAAIFEDTKN 405
Query: 119 NKLQVLP 125
Sbjct: 406 QGLLIGK 412
>gi|2501021 [11..154] OB-fold
Length = 144
Score = 27.6 bits (61), Expect = 1.5
Identities = 15/107 (14%), Positives = 15/107 (14%), Gaps = 17/107 (15%)
Query: 553 FKKLPNLRK--INLSNNKIK------EVREGAFDGAASVQELMLTGNQLETVHGRVF--R 602
Sbjct: 8 LEKAEQLRQLGLNPYAYTWEITHQAQDLQE-TYRDLSNGEEV----DLKVAIAGRILARR 62
Query: 603 GLSGLKTLMLR--SNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPG 647
Sbjct: 63 VMGKLAFFTLQDESGTIQLYLEKQRLTEHMPELENAFNLLKKITDVG 109
>gi|417837 [59..431] Acid proteases
Length = 373
Score = 26.9 bits (59), Expect = 2.5
Identities = 5/65 (7%), Positives = 5/65 (7%), Gaps = 13/65 (20%)
Query: 922 SSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDS---HKD 978
Sbjct: 46 AKNITALSASEIWS----------DTDGVDAGRSTSDIRTNACTNYTCFDYSSTTARRTN 95
Query: 979 GFSCS 983
Sbjct: 96 SSTIG 100
>gi|1788898 [36..308] Periplasmic binding protein-like I
Length = 273
Score = 26.9 bits (59), Expect = 2.5
Identities = 11/93 (11%), Positives = 11/93 (11%), Gaps = 7/93 (7%)
Query: 288 NNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIA 347
Sbjct: 46 DTLVARNVDAIILSAVSENGSSRTVRRASE--AGIPVICYNTC--INQKGVDKYVSAYLV 101
Query: 348 PDAFQGLKSLTSLV---LYGNKITEIAKGLFDG 377
Sbjct: 102 GDPLEFGKKLGNAAADYFIANKIDQPKIAVINC 134
>gi|1175369 [257..504] Nucleotidyltransferases
Length = 248
Score = 26.4 bits (58), Expect = 3.5
Identities = 7/39 (17%), Positives = 7/39 (17%)
Query: 47 CHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLK 85
Sbjct: 13 IFGVGASHAAEWYQKGWRTIEQVRKHKDSFTKQIKVGLE 51
>gi|1518938 [387..612] Heat shock protein 70kD (HSP70), C-terminal, substrate-binding fragment
Length = 226
Score = 26.4 bits (58), Expect = 3.6
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 51 GLRAVPRGIPRNAERLDLDRNNITRITKMD 80
Sbjct: 73 GLPPAPRGVPQIEVAFNVDQNGIMNVSASD 102
>gi|2493473 [2..191] EF Hand-like
Length = 190
Score = 26.3 bits (57), Expect = 3.9
Identities = 12/82 (14%), Positives = 12/82 (14%), Gaps = 1/82 (1%)
Query: 135 LTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNIS 194
Sbjct: 17 KKETGFSHSQITRL-YSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGED 75
Query: 195 RILVTSFNHMPKIRTLRLHSNH 216
Sbjct: 76 QVNFRGFMRTLAHFRPIEDNEK 97
>gi|1778568 [354..541] Heat shock protein 70kD (HSP70), C-terminal, substrate-binding fragment
Length = 188
Score = 26.0 bits (57), Expect = 4.8
Identities = 12/96 (12%), Positives = 12/96 (12%), Gaps = 14/96 (14%)
Query: 38 CTCSAASV-DCHGLG---LRAVPRGIPRNAE-RLDLDRNNITRITKMDFAGLKNLRV--- 89
Sbjct: 57 YQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGLLEVDVLLEDGSVKSRVINH 116
Query: 90 ----LHLEDNQVSVIERGAF--QDLKQLERLRLNKN 119
Sbjct: 117 SPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAK 152
>gi|1790450 [741..896] Flavodoxin-like
Length = 156
Score = 25.7 bits (56), Expect = 5.2
Identities = 15/72 (20%), Positives = 15/72 (20%), Gaps = 9/72 (12%)
Query: 1214 RLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTPKSLGKLQKQPAVGI 1273
Sbjct: 36 EIVDLGVMVPAEKI--LRTAKEVNADLIGLSGL-ITPSLDEMVNVAKEMERQ------GF 86
Query: 1274 NSPLYLGGIPTS 1285
Sbjct: 87 TIPLLIGGATTS 98
>gi|2130182 [8..348] Protein kinases (PK), catalytic core
Length = 341
Score = 25.5 bits (54), Expect = 5.7
Identities = 18/168 (10%), Positives = 18/168 (10%), Gaps = 7/168 (4%)
Query: 993 CEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCI 1052
Sbjct: 74 HEIDILKSVRHPNIITFHDAWYNETEFVFITELMTSGTLREYIRKLTPLPNIKIVKRWCR 133
Query: 1053 PLDKGFSCECVPGYSGKLCETDNDDCVAHKC--RHGAQCVDTINGYTCTCPQGFSGPFCE 1110
Sbjct: 134 QILKGLAYL----HGHEPPII-HRDIKCDNIFINGAHGEIKIGDMGTAEMKNGKKYTVIG 188
Query: 1111 HPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLI 1158
Sbjct: 189 TPEFMAPEMYEEQGYNEKVDIYAFGMCLLEMATGEYPYGECTNAVQVF 236
>gi|2496715 [53..359] NAD(P)-binding Rossmann-fold domains
Length = 307
Score = 25.8 bits (55), Expect = 6.0
Identities = 11/147 (7%), Positives = 11/147 (7%), Gaps = 1/147 (0%)
Query: 197 LVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADV 256
Sbjct: 140 ICKEAMQRDGLDVAIVRPRTVLGYGRQGVVQILFDWVERGLDIPVLGGGNNKYQFVHSDD 199
Query: 257 QKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLMEIPA-NLPEGIVEIRLE 315
Sbjct: 200 LASACIAASNVKGFATYNIGAAEFGTMRELLQVVIKHAETGSRIKSIPMGPTALAANLAS 259
Query: 316 QNSIKAIPAGAFTQYKKLKRIDISKNQ 342
Sbjct: 260 ALGLSPLGPYHSLMYGRAMYFDISKAQ 286
>gi|1942958 [8..338] ATP pyrophoshatases
Length = 331
Score = 25.5 bits (55), Expect = 6.0
Identities = 8/102 (7%), Positives = 8/102 (7%), Gaps = 10/102 (9%)
Query: 991 QRCEINPDDCEDNDCENNATCVDGI-------NNYVCICPPNYTGELCDEVIDHCVPEL- 1042
Sbjct: 79 EWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTREYRGTLTQPGKNSPY 138
Query: 1043 -NLCQHEAKCI-PLDKGFSCECVPGYSGKLCETDNDDCVAHK 1082
Sbjct: 139 RDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRD 180
>gi|2665705 [26..489] Periplasmic binding protein-like II
Length = 464
Score = 25.7 bits (56), Expect = 6.3
Identities = 4/33 (12%), Positives = 4/33 (12%)
Query: 394 LRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPL 426
Sbjct: 2 LYFGLSGEPSTLDTVVQPGTSGRTVKLAIHRGL 34
>gi|2127787 [36..400] Periplasmic binding protein-like I
Length = 365
Score = 25.4 bits (55), Expect = 6.4
Identities = 9/96 (9%), Positives = 9/96 (9%), Gaps = 10/96 (10%)
Query: 1022 CPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDNDDCVAH 1081
Sbjct: 11 GGLATYGNNEKHICEIAEEKINKYFEE-----KGMPYKVKLYVED----TRADPNICLQK 61
Query: 1082 KCRHGAQCVDTINGYTCTCPQGFSGPFCEHPP-PMV 1116
Sbjct: 62 VQALHAQGITFFLGPMASGEVKNIKGFINSNKIVII 97
>gi|1943840 [7..213] Protein kinases (PK), catalytic core
Length = 207
Score = 25.4 bits (54), Expect = 6.4
Identities = 15/180 (8%), Positives = 15/180 (8%), Gaps = 14/180 (7%)
Query: 1340 HGLCRSVEKDSVVCECRPGWTGPLCDQEARDPC-LGHRCHHGKCVATGTSYMCKCAEGYG 1398
Sbjct: 18 FEFFHFNGSVAIVLEHFPH--CTATELLFHSKRDLSFALSYFRNLLYAVAYLHHNGYVHR 75
Query: 1399 GDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQENPCLGQVVREVI 1458
Sbjct: 76 DIKLSN--------FLYSPQTQRFRLVDFGLATVDRSKNE---CSRSHAVAAMERDPECC 124
Query: 1459 RRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQCTDGSSFVEEVERHLECG 1518
Sbjct: 125 SCKGTSSPCMFCRGKPKRENYNVVGTPGVRAPELLFGIGLCHPSIDIFSCGIVLLSLVSV 184
>gi|462182 [68..563] alpha/beta-Hydrolases
Length = 496
Score = 25.4 bits (55), Expect = 6.5
Identities = 7/39 (17%), Positives = 7/39 (17%), Gaps = 3/39 (7%)
Query: 935 PVELYRCACPYSYKG---KDCTVPINTCIQNPCQHGGTC 970
Sbjct: 29 GGGLARFQAAQPIGYQGRVNATVQSPNCAQFPELDRLRL 67
>gi|90456 [248..528] Nucleotidyltransferases
Length = 281
Score = 25.3 bits (55), Expect = 7.0
Identities = 10/41 (24%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 47 CHGLGLRAVPRGIPRNAERL-DLDRNNITRITKMDFAGLKN 86
Sbjct: 8 VFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTKMQKAGFLY 48
>gi|1572759 [30..280] Trypsin-like serine proteases
Length = 251
Score = 25.1 bits (54), Expect = 8.4
Identities = 7/48 (14%), Positives = 7/48 (14%), Gaps = 1/48 (2%)
Query: 1393 CAEGYGGDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSG 1440
Sbjct: 203 CAGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYGADGL-DGVIDQG 249
>gi|1169087 [44..365] Cysteine proteinases
Length = 322
Score = 25.1 bits (54), Expect = 8.6
Identities = 8/58 (13%), Positives = 8/58 (13%), Gaps = 10/58 (17%)
Query: 926 KNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHG--------GTCHLSDS 975
Sbjct: 144 VKDGIVTGSNYTANNGCKPYPFPPCEHHS--KKTHFDPCPHDLYPTPKCEKKCVSDYT 199
Score = 25.1 bits (54), Expect = 9.1
Identities = 17/90 (18%), Positives = 17/90 (18%), Gaps = 13/90 (14%)
Query: 650 TTLVSLSTINLLSNPFNCN-----CHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDV 704
Sbjct: 110 ELQVTLSADDLLSCCKSCGFGCNGGDPLAAWRYWVKDGIVTGSNYTAN-NGCKPYPFPP- 167
Query: 705 AIQDFTCDGNEESSCQLS----PRCPEQCT 730
Sbjct: 168 --CEHHSKKTHFDPCPHDLYPTPKCEKKCV 195
>gi|1750128 [252..391] A domain of alpha and beta subunits of F1 ATP synthase-like
Length = 140
Score = 24.9 bits (54), Expect = 9.6
Identities = 10/30 (33%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 697 KEIPIQDVAIQDFTCDGNEESSCQLSPRCP 726
Sbjct: 97 AEISVDEVA--EMLNTINYEVVSTLSRRIP 124
>gi|730289 [27..419] Single-stranded right-handed beta-helix
Length = 393
Score = 24.9 bits (54), Expect = 9.8
Identities = 11/72 (15%), Positives = 11/72 (15%), Gaps = 3/72 (4%)
Query: 562 INLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGCVS 621
Sbjct: 230 ITMSYNYYHDHDKSSIFGSSDSKTSD-DGKLKITLHHNRYKNIVQ-RAPRVRFGQVHVYN 287
Query: 622 NDTFAGLSSVRL 633
Sbjct: 288 NY-YEGSTSSSS 298
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 1187
Number of sequences better than 10.0: 28
Number of calls to ALIGN: 53
Length of query: 1523
Total length of test sequences: 256703
Effective length of test sequences: 208388.0
Effective search space size: 308860107.0
Initial X dropoff for ALIGN: 25.0 bits
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
calculation of internal repeats with prospero
***** PROSPERO v1.3 Thu Jan 18 20:38:03 2001 *****
Copyright 2000, Richard Mott, Wellcome Trust Centre for Human Genetics, University of Oxford
For help see http://www.well.ox.ac.uk/ariadne For usage use -help
using gap penalty 11+1k
using matrix BLOSUM62
printing all alignments with eval < 0.100000
using sequence1 gi|4049589|dbj|BAA35186.1|
using self-comparison
> 1 gi|4049589|dbj|BAA35186.1| len 1523 from 31 to 1406 vs gi|4049589|dbj|BAA35186.1| len 1523 from 277 to 1447 score 1238 eval 2.848253e-116 identity 32.57% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
31 AVACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVL 90 gi|4049589|dbj|BAA35186.1|
:::||: |||| ||| | || :| :| |: :|
277 SISCPSPCTCSNNIVDCRGKGLMEIPANLPE---------------------GIVEIR-- 313 gi|4049589|dbj|BAA35186.1|
91 HLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPR 150 gi|4049589|dbj|BAA35186.1|
|| | : | ||| |:|:|: ::||:: : || || | | |:| | :
314 -LEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAK 372 gi|4049589|dbj|BAA35186.1|
151 KAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTL 210 gi|4049589|dbj|BAA35186.1|
| |: :: | |: | |:|: |: |::| :|:| :| : | | : |:||
373 GLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTL 432 gi|4049589|dbj|BAA35186.1|
211 RLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEP 270 gi|4049589|dbj|BAA35186.1|
| | ||||| ||:|:|: | :| | :: :: |:: |
433 HLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYR 492 gi|4049589|dbj|BAA35186.1|
271 PSCNAN---SISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPA-GA 326 gi|4049589|dbj|BAA35186.1|
:: : || | | |||| : |: ||::||| : ::|| | : : | |
493 SRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGI 552 gi|4049589|dbj|BAA35186.1|
327 FTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLL 386 gi|4049589|dbj|BAA35186.1|
| : |::|::| |:| :: || | |: |:| ||:: : :| || |: |:|
553 FKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLML 612 gi|4049589|dbj|BAA35186.1|
387 NANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLK 446 gi|4049589|dbj|BAA35186.1|
:| | |: :|| | :: |||||||:: ||: | | | |: |::| ||| |:|||
613 RSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLA 672 gi|4049589|dbj|BAA35186.1|
447 WLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCP 506 gi|4049589|dbj|BAA35186.1|
|| :|: | : || | | | : : | | |:|: | | : ||
673 WLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEE------SSCQLSPRCP 726 gi|4049589|dbj|BAA35186.1|
507 EKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKKLPNLRKINLSN 566 gi|4049589|dbj|BAA35186.1|
|:| | |:| |||: | :| :|: ||:| | | :: : | :| |:|||
727 EQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRE--LSALRHLTLIDLSN 784 gi|4049589|dbj|BAA35186.1|
567 NKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGCVSNDTFA 626 gi|4049589|dbj|BAA35186.1|
| | ||| | :| | ||:| | : |: |
785 NSIS----------------MLT--------NYTFSNMSHLSTLILSYNRLRCIPVHAFN 820 gi|4049589|dbj|BAA35186.1|
627 GLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSG 686 gi|4049589|dbj|BAA35186.1|
|| |:|:|:|: | |::: |:| | ||| : | :|| :|:| | || :|:: |
821 GLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPG 880 gi|4049589|dbj|BAA35186.1|
687 NPRCQKPFFLKEIPIQDVAIQDFTCDG----NEESSCQ--LSPRCPEQCTCMETVVRCSN 740 gi|4049589|dbj|BAA35186.1|
|| | : : : | | | | : | || | || :
881 IARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQ------- 933 gi|4049589|dbj|BAA35186.1|
741 KGLRALPRGMPKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSH 800 gi|4049589|dbj|BAA35186.1|
| |||
934 ------------DPVELY------------------------------------------ 939 gi|4049589|dbj|BAA35186.1|
801 LSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLH 860 gi|4049589|dbj|BAA35186.1|
|| ::: |
940 -----------RCACPYSYKGK-------------------------------------- 950 gi|4049589|dbj|BAA35186.1|
861 CDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNAC 920 gi|4049589|dbj|BAA35186.1|
||:: |: | |
951 -DCTV------------------------------------------PI--------NTC 959 gi|4049589|dbj|BAA35186.1|
921 LSSPCKNNGTC--TQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKD 978 gi|4049589|dbj|BAA35186.1|
: :||:: ||| : : : |:|| ::|: | : : | | |:: || :
960 IQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATC---VDGIN 1016 gi|4049589|dbj|BAA35186.1|
979 GFSCSCPLGFEGQRCEINPDDC--EDNDCENNATCVDGINNYVCICPPNYTGELCDEVID 1036 gi|4049589|dbj|BAA35186.1|
: | || : |: |: | | | | |:: | |: : | | | |:|:||: |
1017 NYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDND 1076 gi|4049589|dbj|BAA35186.1|
1037 HCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCE-------TDNDDCVAHKCRHGAQC 1089 gi|4049589|dbj|BAA35186.1|
|| : |:| |:|: |::| | |:|| || | ::|::||||
1077 DCV--AHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQC 1134 gi|4049589|dbj|BAA35186.1|
1090 VDTINGYTCTCPQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGF 1149 gi|4049589|dbj|BAA35186.1|
: || || ||:|| || :: : | | : : |
1135 IVVQQEPTCRCPPGFAGPRCE---KLITVNFVGKDSY-----VELASAKVRPQANISLQV 1186 gi|4049589|dbj|BAA35186.1|
1150 AGPRCEKLITVNFVGKDSYVELASAKVR---------PQANISLQVATDKDNGILLYKGD 1200 gi|4049589|dbj|BAA35186.1|
| : :: :|| || | |:: | :
1187 ATDKDNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTL 1246 gi|4049589|dbj|BAA35186.1|
1201 NDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTPK 1260 gi|4049589|dbj|BAA35186.1|
| | | : :| : : | | : | | | | | || :
1247 NQTLNLVVDKGTPKSL-GKLQKQPAVGINSPLYLGGIPTSTGLSALRQ--------GTDR 1297 gi|4049589|dbj|BAA35186.1|
1261 SLGKLQK-QPAVGINSPL--YLGGIPTSTGLSALRQGTDRPLGGFHGCIHEVRINNELQD 1317 gi|4049589|dbj|BAA35186.1|
|| | ||: | : | | |:| | || | :: : :
1298 PLGGFHGCIHEVRINNELQDFKALPPQSLGVS---PGCKSCTVCKHGLCRSVEKDSVVCE 1354 gi|4049589|dbj|BAA35186.1|
1318 FKALPPQSLGVSPGCKSCT--VCKHGLCRSVEKDSVVCECRPGWTGPLCD--QEARDPCL 1373 gi|4049589|dbj|BAA35186.1|
: | | | || | : | :|:| |: | ||| :: : |
1355 CRPGWTGPLCDQEARDPCLGHRCHHGKCVAT-GTSYMCKCAEGYGGDLCDNKNDSANACS 1413 gi|4049589|dbj|BAA35186.1|
1374 GHRCHHGKC-VATGTSYMCKCAEGYGGDLCDNKN 1406 gi|4049589|dbj|BAA35186.1|
:||||:| :: | | |: |: | :|
1414 AFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQEN 1447 gi|4049589|dbj|BAA35186.1|
> 2 gi|4049589|dbj|BAA35186.1| len 1523 from 32 to 514 vs gi|4049589|dbj|BAA35186.1| len 1523 from 503 to 930 score 629 eval 3.834500e-57 identity 33.96% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
32 VACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLH 91 gi|4049589|dbj|BAA35186.1|
: || || | ||| | :| :| : : |
503 LVCPEKCRCEGTIVDCSNQKLVRIPSHLP------------------------EYVTDLR 538 gi|4049589|dbj|BAA35186.1|
92 LEDNQVSVIE-RGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPR 150 gi|4049589|dbj|BAA35186.1|
| ||:|||:| | |: | | :: |: ||:: : | | : | |: ||:: :
539 LNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHG 598 gi|4049589|dbj|BAA35186.1|
151 KAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTL 210 gi|4049589|dbj|BAA35186.1|
: |||:: :| | | :| | |: : | | : :|:| :| |: | :| : : |:
599 RVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTI 658 gi|4049589|dbj|BAA35186.1|
211 RLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEP 270 gi|4049589|dbj|BAA35186.1|
| || |:|||||| |||:|| | | | |: : || ::: | :|
659 NLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDG--NEE 716 gi|4049589|dbj|BAA35186.1|
271 PSCNANSISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQY 330 gi|4049589|dbj|BAA35186.1|
|| | || ||| :| | ||| :| :|: : |: || | : |:|
717 SSCQL-SPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPR------ 769 gi|4049589|dbj|BAA35186.1|
331 KKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANK 390 gi|4049589|dbj|BAA35186.1|
|: || : | | |: : | : | |:|: |:
770 -------------------ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNR 810 gi|4049589|dbj|BAA35186.1|
391 INCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLAD 450 gi|4049589|dbj|BAA35186.1|
: |: |: | |::| :|:|: | : :: :| | | |: | | || ||| |:||::
811 LRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSE 870 gi|4049589|dbj|BAA35186.1|
451 YLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCR 510 gi|4049589|dbj|BAA35186.1|
::: | |||||| :|:: : : :|:| | | ::| | | |:
871 WVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDI--NIVAKCNACLSSP--CK 926 gi|4049589|dbj|BAA35186.1|
511 CEGT 514 gi|4049589|dbj|BAA35186.1|
||
927 NNGT 930 gi|4049589|dbj|BAA35186.1|
> 3 gi|4049589|dbj|BAA35186.1| len 1523 from 7 to 413 vs gi|4049589|dbj|BAA35186.1| len 1523 from 9 to 437 score 266 eval 6.732334e-22 identity 29.70% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
7 GVGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGLGL--RAVPRGIPR--- 61 gi|4049589|dbj|BAA35186.1|
| | |||||| | |: :: || | :|| |
9 GAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDL 68 gi|4049589|dbj|BAA35186.1|
62 -----------------NAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGA 104 gi|4049589|dbj|BAA35186.1|
| | |: | :: | : | || | | | |:: |:
69 DRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELL 128 gi|4049589|dbj|BAA35186.1|
105 FQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQL 164 gi|4049589|dbj|BAA35186.1|
|| :| || |::|::| :| |: : | | | | | ||| : |:: | |
129 FQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTL 188 gi|4049589|dbj|BAA35186.1|
165 DNNHISCIEDGAFRALRDLEILTLNNNNI--SRILVTSFNHMPKIRTLRLHSNHLYCDCH 222 gi|4049589|dbj|BAA35186.1|
:||:|| | :| : : | |::|:: | : : : ||: : : |
189 NNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCM-APVH 247 gi|4049589|dbj|BAA35186.1|
223 LAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPS 282 gi|4049589|dbj|BAA35186.1|
| : |:: :| || ||: | :|: | : |
248 LRGFNVADVQKKEY----VCPAP----HSEPPSCNANSISCPS----PCTCSNNIVDCRG 295 gi|4049589|dbj|BAA35186.1|
283 ------PCTCSNNIVDCR--GKGLMEIPANL---PEGIVEIRLEQNSIKAIPAGAFTQYK 331 gi|4049589|dbj|BAA35186.1|
| ||: | : ||| : : | : :| | | || |
296 KGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLK 355 gi|4049589|dbj|BAA35186.1|
332 KLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKI 391 gi|4049589|dbj|BAA35186.1|
| : : |:|::|| | || || |:| ||| : | | :| || | ||:
356 SLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKL 415 gi|4049589|dbj|BAA35186.1|
392 NCLRVNTFQDLQNLNLLSLYDN 413 gi|4049589|dbj|BAA35186.1|
: | ||:: | | |
416 QTISKGLFAPLQSIQTLHLAQN 437 gi|4049589|dbj|BAA35186.1|
> 4 gi|4049589|dbj|BAA35186.1| len 1523 from 34 to 292 vs gi|4049589|dbj|BAA35186.1| len 1523 from 725 to 937 score 263 eval 1.316565e-21 identity 33.33% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
34 CPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLE 93 gi|4049589|dbj|BAA35186.1|
|| :||| | | ||||:|||:|:: | |: |::| : : : : |::| :: |
725 CPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPR-ELSALRHLTLIDLS 783 gi|4049589|dbj|BAA35186.1|
94 DNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAF 153 gi|4049589|dbj|BAA35186.1|
:| :|:: | :: | | |: |:|:
784 NNSISMLTNYTFSNMSHLSTLILSYNRLR------------------------------- 812 gi|4049589|dbj|BAA35186.1|
154 RGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLH 213 gi|4049589|dbj|BAA35186.1|
|| || || | :|||: |:|| : ||| : : | |
813 -----------------CIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALG 855 gi|4049589|dbj|BAA35186.1|
214 SNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVC--PAPHSEPP 271 gi|4049589|dbj|BAA35186.1|
:| |:||| | |||:|:: | :| : : : | | :
856 TNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVA 915 gi|4049589|dbj|BAA35186.1|
272 SCNA-NSISCPSPCTCSNNIVD 292 gi|4049589|dbj|BAA35186.1|
||| | | : ||: : |:
916 KCNACLSSPCKNNGTCTQDPVE 937 gi|4049589|dbj|BAA35186.1|
> 5 gi|4049589|dbj|BAA35186.1| len 1523 from 65 to 145 vs gi|4049589|dbj|BAA35186.1| len 1523 from 137 to 217 score 139 eval 1.441687e-09 identity 38.27% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
65 RLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVL 124 gi|4049589|dbj|BAA35186.1|
|||| | | | : | |: ::: | |::| :| || |||: |: || | || | : :
137 RLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRI 196 gi|4049589|dbj|BAA35186.1|
125 PELLFQSTPKLTRLDLSENQI 145 gi|4049589|dbj|BAA35186.1|
| ||: | | | :
197 LVTSFNHMPKIRTLRLHSNHL 217 gi|4049589|dbj|BAA35186.1|
> 6 gi|4049589|dbj|BAA35186.1| len 1523 from 61 to 171 vs gi|4049589|dbj|BAA35186.1| len 1523 from 109 to 219 score 138 eval 1.802865e-09 identity 27.93% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
61 RNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNK 120 gi|4049589|dbj|BAA35186.1|
: ||| |::| : : :: | | | | :||: | | ||: : :: |:|: |
109 KQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNH 168 gi|4049589|dbj|BAA35186.1|
121 LQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISC 171 gi|4049589|dbj|BAA35186.1|
: : : |:: | | |: | | | :| : :: |:| :||: |
169 ISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYC 219 gi|4049589|dbj|BAA35186.1|
> 7 gi|4049589|dbj|BAA35186.1| len 1523 from 57 to 121 vs gi|4049589|dbj|BAA35186.1| len 1523 from 146 to 217 score 95 eval 2.697246e-05 identity 40.00% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
57 RGIPRNAER-------LDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLK 109 gi|4049589|dbj|BAA35186.1|
:|||| | | | || |:|: | | |::| :| | :| :| | :| :
146 QGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMP 205 gi|4049589|dbj|BAA35186.1|
110 QLERLRLNKNKL 121 gi|4049589|dbj|BAA35186.1|
:: |||: | |
206 KIRTLRLHSNHL 217 gi|4049589|dbj|BAA35186.1|
> 8 gi|4049589|dbj|BAA35186.1| len 1523 from 66 to 119 vs gi|4049589|dbj|BAA35186.1| len 1523 from 610 to 663 score 83 eval 3.944089e-04 identity 38.89% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
66 LDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKN 119 gi|4049589|dbj|BAA35186.1|
| | | | :: |||| ::|:| | ||::: | ||| | | : | |
610 LMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSN 663 gi|4049589|dbj|BAA35186.1|
> 9 gi|4049589|dbj|BAA35186.1| len 1523 from 61 to 97 vs gi|4049589|dbj|BAA35186.1| len 1523 from 181 to 217 score 62 eval 4.223106e-02 identity 37.84% K 1.946626e-02 L 2.235630e-01 H 1.402204e+00 alpha 1.036353e-01
61 RNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQV 97 gi|4049589|dbj|BAA35186.1|
|: | | |: |||:|| | : :| | | | :
181 RDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHL 217 gi|4049589|dbj|BAA35186.1|