analysis of sequence from tem24
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
>gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
MSVSRTMEDSCELDLVYVTERIIAVSFPSTANEENFRSNLREVAQMLKSKHGGNYLLFNLSERRPDITKL
HAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASADQA
LDRFAMKRFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNFESKGGCRPFLRIY
QAMQPVYTSGIYNIPGDSQTSVCITIEPGLLLKGDILLKCYHKKFRSPARDVIFRVQFHTCAIHDLGVVF
GKEDLDDAFKDDRFPEYGKVEFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSGHRDDGM
EEVVGHTQGPLDGSLYAKVKKKDSLHGSTGAVNATRPTLSATPNHVEHTLSVSSDSGNSTASTKTDKTDE
PVPGASSATAALSPQEKRELDRLLSGFGLEREKQGAMYHTQHLRSRPAGGSAVPSSGRHVVPAQVHVNGG
ALASERETDILDDELPNQDGHSAGSMGTLSSLDGVTNTSEGGYPEALSPLTNGLDKSYPMEPMVNGGGYP
YESASRAGPAHAGHTAPMRPSYSAQEGLAGYQREGPHPAWPQPVTTSHYAHDPSGMFRSQSFSEAEPQLP
PAPVRGGSSREAVQRGLNSWQQQQQQQQQPRPPPRQQERAHLESLVASRPSPQPLAETPIPSLPEFPRAA
SQQEIEQSIETLNMLMLDLEPASAAAPLHKSQSVPGAWPGASPLSSQPLSGSSRQSHPLTQSRSGYIPSG
HSLGTPEPAPRASLESVPPGRSYSPYDYQPCLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLP
GLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASDGQYENQSPEA
TSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYKEAFEEMEGTSPSSPPPSGVRSPPGLAKTPL
SALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSEEPRSYVESVARTAVAGPRAQDSEPKSFSAP
ATQAYGHEIPLRNGTLGGSFVSPSPLSTSSPILSADSTSVGSFPSGESSDQGPRTPTQPLLESGFRSGSL
GQPSPSAQRNYQSSSPLPTVGSSYSSPDYSLQHFSSSPESQARAQFSVAGVHTVPGSPQARHRTVGTNTP
PSPGFGRRAINPSMAAPSSPSLSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHPAGVYQVSGLH
NKVATTPGSPSLGRHPGAHQGNLASGLHSNAIASPGSPSLGRHLGGSGSVVPGSPCLDRHVAYGGYSTPE
DRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPTPALPEKRRMSVGDRAGS
LPNYATINGKVASPVPSGMSSPSGGSTVSFSHTLPDFSKYSMPDNSPETRAKVKFVQDTSKYWYKPEISR
EQAIALLKDQEPGAFIIRDSHSFRGAYGLAMKVSSPPPTIMQQNKKGDMTHELVRHFLIETGPRGVKLKG
CPNEPNFGSLSALVYQHSIIPLALPCKLVIPNRDPTDESKDSSGPANSTADLLKQGAACNVLFINSVDME
SLTGPQAISKATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMK
TEGGAPAKLFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVMLNAGQKR
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
sec.str. with predator
> gi|11275669|gb|AAG33700.1|
. . . . .
1 MSVSRTMEDSCELDLVYVTERIIAVSFPSTANEENFRSNLREVAQMLKSK 50
___HHHHH___HHHHHHHHHHHEEEE____________HHHHHHHHHHH_
. . . . .
51 HGGNYLLFNLSERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTW 100
____EEEEE________HHHHHHHH_________HHHHHHHHHHHHHHHH
. . . . .
101 LNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASADQALDRFAMKRFY 150
______EEEEEE_________HHHHHHH____HHHHHHHHHHHHHHHHHH
. . . . .
151 EDKIVPIGQPSQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNFESK 200
HHHEEE______EEEEEE________________________________
. . . . .
201 GGCRPFLRIYQAMQPVYTSGIYNIPGDSQTSVCITIEPGLLLKGDILLKC 250
____HHHHHHHH_________________EEEEEEE_________EEEEE
. . . . .
251 YHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDDAFKDDRFPEYGKV 300
__________EEEEEE___EEEE_____EEE____HHHHH________EE
. . . . .
301 EFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSGHRDDGM 350
EEEE__________________EEEE_______EEE______________
. . . . .
351 EEVVGHTQGPLDGSLYAKVKKKDSLHGSTGAVNATRPTLSATPNHVEHTL 400
EEEEEE________________________EEE_____________EEEE
. . . . .
401 SVSSDSGNSTASTKTDKTDEPVPGASSATAALSPQEKRELDRLLSGFGLE 450
EEE________________________________HHHHHHHHH_____H
. . . . .
451 REKQGAMYHTQHLRSRPAGGSAVPSSGRHVVPAQVHVNGGALASERETDI 500
HHHHHHH_____________________EEEEEEEE____HHHHHHHHH_
. . . . .
501 LDDELPNQDGHSAGSMGTLSSLDGVTNTSEGGYPEALSPLTNGLDKSYPM 550
____________________EEEEEEE_______________________
. . . . .
551 EPMVNGGGYPYESASRAGPAHAGHTAPMRPSYSAQEGLAGYQREGPHPAW 600
__________________________________________________
. . . . .
601 PQPVTTSHYAHDPSGMFRSQSFSEAEPQLPPAPVRGGSSREAVQRGLNSW 650
_____EEEEE____________________________HHHHHHH___HH
. . . . .
651 QQQQQQQQQPRPPPRQQERAHLESLVASRPSPQPLAETPIPSLPEFPRAA 700
HHHHHHHH_______HHHHHHHHHHHH_______________________
. . . . .
701 SQQEIEQSIETLNMLMLDLEPASAAAPLHKSQSVPGAWPGASPLSSQPLS 750
HHHHHHHHHHHHHHHHHH________________________________
. . . . .
751 GSSRQSHPLTQSRSGYIPSGHSLGTPEPAPRASLESVPPGRSYSPYDYQP 800
______________________________HHHHH_______________
. . . . .
801 CLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLPGLTAQPLLSP 850
__________________________________________________
. . . . .
851 KEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASD 900
__________________HHHHHHHHHHHHHHH_________HHHHHH__
. . . . .
901 GQYENQSPEATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYK 950
_____________________EEE_HHHHHHHHH____________HHHH
. . . . .
951 EAFEEMEGTSPSSPPPSGVRSPPGLAKTPLSALGLKPHNPADILLHPTGV 1000
HHHHHH___________________________________EEEE_____
. . . . .
1001 TRRRIQPEEDEGKVVVRLSEEPRSYVESVARTAVAGPRAQDSEPKSFSAP 1050
____________EEEEEE_____HHHHHHHHHHH________________
. . . . .
1051 ATQAYGHEIPLRNGTLGGSFVSPSPLSTSSPILSADSTSVGSFPSGESSD 1100
__________________________________________________
. . . . .
1101 QGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPTVGSSYSSPDYS 1150
__________________________________________________
. . . . .
1151 LQHFSSSPESQARAQFSVAGVHTVPGSPQARHRTVGTNTPPSPGFGRRAI 1200
EEEE_____HHHHHHHHHEEEE____________________________
. . . . .
1201 NPSMAAPSSPSLSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHP 1250
__________________________________________________
. . . . .
1251 AGVYQVSGLHNKVATTPGSPSLGRHPGAHQGNLASGLHSNAIASPGSPSL 1300
___________EEEE___________________________________
. . . . .
1301 GRHLGGSGSVVPGSPCLDRHVAYGGYSTPEDRRPTLSRQSSASGYQAPST 1350
EEE_____________EEEEEEE___________________________
. . . . .
1351 PSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPTPALPEKRRMSVGDRAGS 1400
_____________________________________HHHHHH_______
. . . . .
1401 LPNYATINGKVASPVPSGMSSPSGGSTVSFSHTLPDFSKYSMPDNSPETR 1450
_________________________EEEE___________________HH
. . . . .
1451 AKVKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLA 1500
HHHHHH____________HHHHHHHHHHH_____EEEEE_________EE
. . . . .
1501 MKVSSPPPTIMQQNKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSL 1550
EEE________________HHHHHHHHHH______EEE_________HHH
. . . . .
1551 SALVYQHSIIPLALPCKLVIPNRDPTDESKDSSGPANSTADLLKQGAACN 1600
HHHHHHHHEEEEE___EEEE__________________HHHHHHH___EE
. . . . .
1601 VLFINSVDMESLTGPQAISKATSETLAADPTPAATIVHFKVSAQGITLTD 1650
EEEEE____________HHHHHHHHHH_______________________
. . . . .
1651 NQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGAPAKLFGFVARKQGST 1700
_HHHHHHHH_____EEEE______HHHHH________EEEEEEEE_____
. . .
1701 TDNACHLFAELDPNQPASAIVNFVSKVMLNAGQKR 1735
___HHHHHH________EEEHHHHHHHHHH_____
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
method : 1
alpha-contents : 11.4 %
beta-contents : 2.2 %
coil-contents : 86.4 %
class : irregular
method : 2
alpha-contents : 0.0 %
beta-contents : 0.0 %
coil-contents : 100.0 %
class : irregular
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
GPI: learning from metazoa
-12.79 -4.24 -4.35 -5.20 -4.00 0.00 -24.00 0.00 -0.75 -19.16 -6.28 -12.00 -12.00 0.00 -12.00 0.00 -116.77
-24.65 -1.67 -0.34 -0.12 -4.00 0.00 -32.00 0.00 -4.29 -19.16 -6.28 -12.00 -12.00 0.00 0.00 0.00 -116.51
ID: gi|11275669|gb|AAG33700.1| AC: xxx Len: 1680 1:I 1671 Sc: -116.51 Pv: 9.999979e-01 NO_GPI_SITE
GPI: learning from protozoa
-15.39 -1.53 -1.23 -1.15 -4.00 0.00 -28.00 0.00 -1.46 -15.91 -19.39 -12.00 -12.00 0.00 -12.00 0.00 -124.06
-23.05 -1.86 -1.35 -0.13 -4.00 0.00 -32.00 0.00 -2.27 -15.91 -19.39 -12.00 -12.00 0.00 0.00 0.00 -123.98
ID: gi|11275669|gb|AAG33700.1| AC: xxx Len: 1680 1:I 1671 Sc: -123.98 Pv: 9.989399e-01 NO_GPI_SITE
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
# SignalP euk predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|11275669 0.524 725 Y 0.165 282 N 0.580 724 N 0.078 N
# SignalP gram- predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|11275669 0.623 1238 Y 0.269 1085 N 0.770 1660 N 0.117 N
# SignalP gram+ predictions
# name Cmax pos ? Ymax pos ? Smax pos ? Smean ?
gi|11275669 0.567 953 Y 0.384 725 Y 0.800 1642 N 0.136 N
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
low complexity regions: SEG 12 2.2 2.5
>gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
1-650 MSVSRTMEDSCELDLVYVTERIIAVSFPST
ANEENFRSNLREVAQMLKSKHGGNYLLFNL
SERRPDITKLHAKVLEFGWPDLHTPALEKI
CSICKAMDTWLNADPHNVVVLHNKGNRGRI
GVVIAAYMHYSNISASADQALDRFAMKRFY
EDKIVPIGQPSQRRYVHYFSGLLSGSIKIN
NKPLFLHHVIMHGIPNFESKGGCRPFLRIY
QAMQPVYTSGIYNIPGDSQTSVCITIEPGL
LLKGDILLKCYHKKFRSPARDVIFRVQFHT
CAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTS
DPLIRWDSYDNFSGHRDDGMEEVVGHTQGP
LDGSLYAKVKKKDSLHGSTGAVNATRPTLS
ATPNHVEHTLSVSSDSGNSTASTKTDKTDE
PVPGASSATAALSPQEKRELDRLLSGFGLE
REKQGAMYHTQHLRSRPAGGSAVPSSGRHV
VPAQVHVNGGALASERETDILDDELPNQDG
HSAGSMGTLSSLDGVTNTSEGGYPEALSPL
TNGLDKSYPMEPMVNGGGYPYESASRAGPA
HAGHTAPMRPSYSAQEGLAGYQREGPHPAW
PQPVTTSHYAHDPSGMFRSQSFSEAEPQLP
PAPVRGGSSREAVQRGLNSW
qqqqqqqqqprppprqq 651-667
668-741 ERAHLESLVASRPSPQPLAETPIPSLPEFP
RAASQQEIEQSIETLNMLMLDLEPASAAAP
LHKSQSVPGAWPGA
splssqplsgssrqs 742-756
757-810 HPLTQSRSGYIPSGHSLGTPEPAPRASLES
VPPGRSYSPYDYQPCLAGPNQDFH
skspassslpaflptthsppgpqqppaslp 811-842
gl
843-885 TAQPLLSPKEATSDPSRTPEEEPLNLEGLV
AHRVAGVQAREKQ
paeppaplrrraa 886-898
899-959 SDGQYENQSPEATSPRSPGVRSPVQCVSPE
LALTIALNPGGRPKEPHLHSYKEAFEEMEG
T
spsspppsgvrspp 960-973
974-1071 GLAKTPLSALGLKPHNPADILLHPTGVTRR
RIQPEEDEGKVVVRLSEEPRSYVESVARTA
VAGPRAQDSEPKSFSAPATQAYGHEIPLRN
GTLGGSFV
spsplstsspils 1072-1084
1085-1198 ADSTSVGSFPSGESSDQGPRTPTQPLLESG
FRSGSLGQPSPSAQRNYQSSSPLPTVGSSY
SSPDYSLQHFSSSPESQARAQFSVAGVHTV
PGSPQARHRTVGTNTPPSPGFGRR
ainpsmaapsspsls 1199-1213
1214-1304 HHQMMGPPGTGFHGSTVSSPQSSAATTPGS
PSLCRHPAGVYQVSGLHNKVATTPGSPSLG
RHPGAHQGNLASGLHSNAIASPGSPSLGRH
L
ggsgsvvpgsp 1305-1315
1316-1363 CLDRHVAYGGYSTPEDRRPTLSRQSSASGY
QAPSTPSFPVSPAYYPGL
sspatspspdsaa 1364-1376
1377-1410 FRQGSPTPALPEKRRMSVGDRAGSLPNYAT
INGK
vaspvpsgmsspsggstvsfs 1411-1431
1432-1735 HTLPDFSKYSMPDNSPETRAKVKFVQDTSK
YWYKPEISREQAIALLKDQEPGAFIIRDSH
SFRGAYGLAMKVSSPPPTIMQQNKKGDMTH
ELVRHFLIETGPRGVKLKGCPNEPNFGSLS
ALVYQHSIIPLALPCKLVIPNRDPTDESKD
SSGPANSTADLLKQGAACNVLFINSVDMES
LTGPQAISKATSETLAADPTPAATIVHFKV
SAQGITLTDNQRKLFFRRHYPLNTVTFCDL
DPQERKWMKTEGGAPAKLFGFVARKQGSTT
DNACHLFAELDPNQPASAIVNFVSKVMLNA
GQKR
low complexity regions: SEG 25 3.0 3.3
>gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
1-460 MSVSRTMEDSCELDLVYVTERIIAVSFPST
ANEENFRSNLREVAQMLKSKHGGNYLLFNL
SERRPDITKLHAKVLEFGWPDLHTPALEKI
CSICKAMDTWLNADPHNVVVLHNKGNRGRI
GVVIAAYMHYSNISASADQALDRFAMKRFY
EDKIVPIGQPSQRRYVHYFSGLLSGSIKIN
NKPLFLHHVIMHGIPNFESKGGCRPFLRIY
QAMQPVYTSGIYNIPGDSQTSVCITIEPGL
LLKGDILLKCYHKKFRSPARDVIFRVQFHT
CAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTS
DPLIRWDSYDNFSGHRDDGMEEVVGHTQGP
LDGSLYAKVKKKDSLHGSTGAVNATRPTLS
ATPNHVEHTLSVSSDSGNSTASTKTDKTDE
PVPGASSATAALSPQEKRELDRLLSGFGLE
REKQGAMYHT
qhlrsrpaggsavpssgrhvvpaqvhvngg 461-494
alas
495-629 ERETDILDDELPNQDGHSAGSMGTLSSLDG
VTNTSEGGYPEALSPLTNGLDKSYPMEPMV
NGGGYPYESASRAGPAHAGHTAPMRPSYSA
QEGLAGYQREGPHPAWPQPVTTSHYAHDPS
GMFRSQSFSEAEPQL
ppapvrggssreavqrglnswqqqqqqqqq 630-710
prppprqqerahleslvasrpspqplaetp
ipslpefpraasqqeieqsie
711-718 TLNMLMLD
lepasaaaplhksqsvpgawpgasplssqp 719-774
lsgssrqshpltqsrsgyipsghslg
775-812 TPEPAPRASLESVPPGRSYSPYDYQPCLAG
PNQDFHSK
spassslpaflptthsppgpqqppaslpgl 813-902
taqpllspkeatsdpsrtpeeeplnleglv
ahrvagvqarekqpaeppaplrrraasdgq
903-957 YENQSPEATSPRSPGVRSPVQCVSPELALT
IALNPGGRPKEPHLHSYKEAFEEME
gtspsspppsgvrsppglaktplsalglkp 958-987
988-1066 HNPADILLHPTGVTRRRIQPEEDEGKVVVR
LSEEPRSYVESVARTAVAGPRAQDSEPKSF
SAPATQAYGHEIPLRNGTL
ggsfvspsplstsspilsadstsvgsfpsg 1067-1167
essdqgprtptqpllesgfrsgslgqpsps
aqrnyqsssplptvgssysspdyslqhfss
spesqaraqfs
1168-1201 VAGVHTVPGSPQARHRTVGTNTPPSPGFGR
RAIN
psmaapsspslshhqmmgppgtgfhgstvs 1202-1245
spqssaattpgsps
1246-1266 LCRHPAGVYQVSGLHNKVATT
pgspslgrhpgahqgnlasglhsnaiaspg 1267-1315
spslgrhlggsgsvvpgsp
1316-1321 CLDRHV
ayggystpedrrptlsrqssasgyqapstp 1322-1387
sfpvspayypglsspatspspdsaafrqgs
ptpalp
1388-1398 EKRRMSVGDRA
gslpnyatingkvaspvpsgmsspsggstv 1399-1444
sfshtlpdfskysmpd
1445-1735 NSPETRAKVKFVQDTSKYWYKPEISREQAI
ALLKDQEPGAFIIRDSHSFRGAYGLAMKVS
SPPPTIMQQNKKGDMTHELVRHFLIETGPR
GVKLKGCPNEPNFGSLSALVYQHSIIPLAL
PCKLVIPNRDPTDESKDSSGPANSTADLLK
QGAACNVLFINSVDMESLTGPQAISKATSE
TLAADPTPAATIVHFKVSAQGITLTDNQRK
LFFRRHYPLNTVTFCDLDPQERKWMKTEGG
APAKLFGFVARKQGSTTDNACHLFAELDPN
QPASAIVNFVSKVMLNAGQKR
low complexity regions: SEG 45 3.4 3.75
>gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
1-353 MSVSRTMEDSCELDLVYVTERIIAVSFPST
ANEENFRSNLREVAQMLKSKHGGNYLLFNL
SERRPDITKLHAKVLEFGWPDLHTPALEKI
CSICKAMDTWLNADPHNVVVLHNKGNRGRI
GVVIAAYMHYSNISASADQALDRFAMKRFY
EDKIVPIGQPSQRRYVHYFSGLLSGSIKIN
NKPLFLHHVIMHGIPNFESKGGCRPFLRIY
QAMQPVYTSGIYNIPGDSQTSVCITIEPGL
LLKGDILLKCYHKKFRSPARDVIFRVQFHT
CAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTS
DPLIRWDSYDNFSGHRDDGMEEV
vghtqgpldgslyakvkkkdslhgstgavn 354-456
atrptlsatpnhvehtlsvssdsgnstast
ktdktdepvpgassataalspqekreldrl
lsgfglerekqga
457-482 MYHTQHLRSRPAGGSAVPSSGRHVVP
aqvhvnggalaseretdilddelpnqdghs 483-616
agsmgtlssldgvtntseggypealspltn
gldksypmepmvngggypyesasragpaha
ghtapmrpsysaqeglagyqregphpawpq
pvttshyahdpsgm
617-617 F
rsqsfseaepqlppapvrggssreavqrgl 618-998
nswqqqqqqqqqprppprqqerahleslva
srpspqplaetpipslpefpraasqqeieq
sietlnmlmldlepasaaaplhksqsvpga
wpgasplssqplsgssrqshpltqsrsgyi
psghslgtpepapraslesvppgrsyspyd
yqpclagpnqdfhskspassslpaflptth
sppgpqqppaslpgltaqpllspkeatsdp
srtpeeeplnleglvahrvagvqarekqpa
eppaplrrraasdgqyenqspeatsprspg
vrspvqcvspelaltialnpggrpkephlh
sykeafeemegtspsspppsgvrsppglak
tplsalglkphnpadillhpt
999-1034 GVTRRRIQPEEDEGKVVVRLSEEPRSYVES
VARTAV
agpraqdsepksfsapatqaygheiplrng 1035-1402
tlggsfvspsplstsspilsadstsvgsfp
sgessdqgprtptqpllesgfrsgslgqps
psaqrnyqsssplptvgssysspdyslqhf
ssspesqaraqfsvagvhtvpgspqarhrt
vgtntppspgfgrrainpsmaapsspslsh
hqmmgppgtgfhgstvsspqssaattpgsp
slcrhpagvyqvsglhnkvattpgspslgr
hpgahqgnlasglhsnaiaspgspslgrhl
ggsgsvvpgspcldrhvayggystpedrrp
tlsrqssasgyqapstpsfpvspayypgls
spatspspdsaafrqgsptpalpekrrmsv
gdragslp
1403-1735 NYATINGKVASPVPSGMSSPSGGSTVSFSH
TLPDFSKYSMPDNSPETRAKVKFVQDTSKY
WYKPEISREQAIALLKDQEPGAFIIRDSHS
FRGAYGLAMKVSSPPPTIMQQNKKGDMTHE
LVRHFLIETGPRGVKLKGCPNEPNFGSLSA
LVYQHSIIPLALPCKLVIPNRDPTDESKDS
SGPANSTADLLKQGAACNVLFINSVDMESL
TGPQAISKATSETLAADPTPAATIVHFKVS
AQGITLTDNQRKLFFRRHYPLNTVTFCDLD
PQERKWMKTEGGAPAKLFGFVARKQGSTTD
NACHLFAELDPNQPASAIVNFVSKVMLNAG
QKR
low complexity regions: XNU
# Score cutoff = 21, Search from offsets 1 to 4
# both members of each repeat flagged
# lambda = 0.347, K = 0.200, H = 0.664
>gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
MSVSRTMEDSCELDLVYVTERIIAVSFPSTANEENFRSNLREVAQMLKSKHGGNYLLFNL
SERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPHNVVVLHNKGNRGRI
GVVIAAYMHYSNISASADQALDRFAMKRFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKIN
NKPLFLHHVIMHGIPNFESKGGCRPFLRIYQAMQPVYTSGIYNIPGDSQTSVCITIEPGL
LLKGDILLKCYHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSGHRDDGMEEVVGHTQGP
LDGSLYAKVKKKDSLHgstgavnatrptlsatpnhvehtlsvssdsgnstastktdktde
pvpgassataaLSPQEKRELDRLLSGFGLEREKQGAMYHTQHLRSRPAGGSAVPSSGRHV
VPAQVHVNGGALASERETDILDDELPnqdghsagsmgtlssldgvtntseGGYPEALSPL
TNGLDKSYPMEPMVNGGGYPYESASRAGPAHAGHTAPMRPSYSAQEGLAGYQREGPHPAW
PQPVTTSHYAHDPSGMFRSQSFSEAEPQLPPAPVRGGSSREAVQRGLNSWqqqqqqqqqp
rppprqqerahLESLVASRPSPQPLAETPIPSLPEFPRAASQQEIEQSIETLNmlmldle
pasaaapLHKSQSVPGAWPGASPLSSQPLSGSSRQSHPLTQSRSGYIPSGHSLGTPEPAP
RASLESVPPGRSYSPYDYQPCLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLP
GLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASD
GQYENQSPEATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYKEAFEEMEGts
psspppsgvrsppGLAKTPLSALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSE
EPRSYVESVARTAVAGPRAQDSEPKSFSAPATQAYGHEIPLRNGTLGGSFVSPSPLSTSS
PILSADSTSVGSFPSGESSDQGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPTV
GSSYSSPDYSLQHFSSSPESQARAQFSVAGVHTVPGSPQARHRTVGTNTPPSPGFGRRAI
NPSMAAPSSPSLSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHPAGVYQVSGLH
NKVATTPGSPSLGRHPGAHQGNLASGLHSNAIASPGSPSLGRHLGGSGSVVPGSPCLDRH
VAYGGYSTPEDRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAFRQG
SPTPALPEKRRMSVGDRAGSLPNYATINGKVASPVPSGMSSPSGGSTVSFSHTLPDFSKY
SMPDNSPETRAKVKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLA
MKVssppptimqqnkkGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSLSALVYQHSII
PLALPCKLVIPNRDPTDESKDSSGPANSTADLLKQGAACNVLFINSVDMESLTGPQAISK
ATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMK
TEGGAPAKLFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVMLNAGQKR
1 - 376 MSVSRTMEDS CELDLVYVTE RIIAVSFPST ANEENFRSNL REVAQMLKSK HGGNYLLFNL
SERRPDITKL HAKVLEFGWP DLHTPALEKI CSICKAMDTW LNADPHNVVV LHNKGNRGRI
GVVIAAYMHY SNISASADQA LDRFAMKRFY EDKIVPIGQP SQRRYVHYFS GLLSGSIKIN
NKPLFLHHVI MHGIPNFESK GGCRPFLRIY QAMQPVYTSG IYNIPGDSQT SVCITIEPGL
LLKGDILLKC YHKKFRSPAR DVIFRVQFHT CAIHDLGVVF GKEDLDDAFK DDRFPEYGKV
EFVFSYGPEK IQGMEHLENG PSVSVDYNTS DPLIRWDSYD NFSGHRDDGM EEVVGHTQGP
LDGSLYAKVK KKDSLH
377 - 431 gstg avnatrptls atpnhvehtl svssdsgnst astktdktde pvpgassata a
432 - 506 LSPQEKREL DRLLSGFGLE REKQGAMYHT QHLRSRPAGG SAVPSSGRHV VPAQVHVNGG A
LASERETDI LDDELP
507 - 530 nqdg hsagsmgtls sldgvtntse
531 - 650 GGYPEALSPL TNGLDKSYPM EPMVNGGGYP YESASRAGPA HAGHTAPMRP SYSAQEGLAG
YQREGPHPAW PQPVTTSHYA HDPSGMFRSQ SFSEAEPQLP PAPVRGGSSR EAVQRGLNSW
651 - 671 qqqqqqqqqp rppprqqera h
672 - 713 LESLVASRP SPQPLAETPI PSLPEFPRAA SQQEIEQSIE TLN
714 - 727 mlmldle pasaaap
728 - 958 LHK SQSVPGAWPG ASPLSSQPLS GSSRQSHPLT QSRSGYIPSG HSLGTPEPAP RASLESV
PPG RSYSPYDYQP CLAGPNQDFH SKSPASSSLP AFLPTTHSPP GPQQPPASLP GLTAQPL
LSP KEATSDPSRT PEEEPLNLEG LVAHRVAGVQ AREKQPAEPP APLRRRAASD GQYENQS
PEA TSPRSPGVRS PVQCVSPELA LTIALNPGGR PKEPHLHSYK EAFEEMEG
959 - 973 ts psspppsgvr spp
974 - 1503 GLAKTPL SALGLKPHNP ADILLHPTGV TRRRIQPEED EGKVVVRLSE EPRSYVESVA RTA
VAGPRAQ DSEPKSFSAP ATQAYGHEIP LRNGTLGGSF VSPSPLSTSS PILSADSTSV GSF
PSGESSD QGPRTPTQPL LESGFRSGSL GQPSPSAQRN YQSSSPLPTV GSSYSSPDYS LQH
FSSSPES QARAQFSVAG VHTVPGSPQA RHRTVGTNTP PSPGFGRRAI NPSMAAPSSP SLS
HHQMMGP PGTGFHGSTV SSPQSSAATT PGSPSLCRHP AGVYQVSGLH NKVATTPGSP SLG
RHPGAHQ GNLASGLHSN AIASPGSPSL GRHLGGSGSV VPGSPCLDRH VAYGGYSTPE DRR
PTLSRQS SASGYQAPST PSFPVSPAYY PGLSSPATSP SPDSAAFRQG SPTPALPEKR RMS
VGDRAGS LPNYATINGK VASPVPSGMS SPSGGSTVSF SHTLPDFSKY SMPDNSPETR AKV
KFVQDTS KYWYKPEISR EQAIALLKDQ EPGAFIIRDS HSFRGAYGLA MKV
1504 - 1516 sspppti mqqnkk
1517 - 1735 GDMT HELVRHFLIE TGPRGVKLKG CPNEPNFGSL SALVYQHSII PLALPCKLVI PNRDPT
DESK DSSGPANSTA DLLKQGAACN VLFINSVDME SLTGPQAISK ATSETLAADP TPAATI
VHFK VSAQGITLTD NQRKLFFRRH YPLNTVTFCD LDPQERKWMK TEGGAPAKLF GFVARK
QGST TDNACHLFAE LDPNQPASAI VNFVSKVMLN AGQKR
low complexity regions: DUST
>gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
MSVSRTMEDSCELDLVYVTERIIAVSFPSTANEENFRSNLREVAQMLKSKHGGNYLLFNL
SERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPHNVVVLHNKGNRGRI
GVVIAAYMHYSNISASADQALDRFAMKRFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKIN
NKPLFLHHVIMHGIPNFESKGGCRPFLRIYQAMQPVYTSGIYNIPGDSQTSVCITIEPGL
LLKGDILLKCYHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSGHRDDGMEEVVGHTQGP
LDGSLYAKVKKKDSLHGSTGAVNATRPTLSATPNHVEHTLSVSSDSGNSTASTKTDKTDE
PVPGASSATAALSPQEKRELDRLLSGFGLEREKQGAMYHTQHLRSRPAGGSAVPSSGRHV
VPAQVHVNGGALASERETDILDDELPNQDGHSAGSMGTLSSLDGVTNTSEGGYPEALSPL
TNGLDKSYPMEPMVNGGGYPYESASRAGPAHAGHTAPMRPSYSAQEGLAGYQREGPHPAW
PQPVTTSHYAHDPSGMFRSQSFSEAEPQLPPAPVRGGSSREAVQRGLNSWNNNNNNNNNP
RPPPRQQERAHLESLVASRPSPQPLAETPIPSLPEFPRAASQQEIEQSIETLNMLMLDLE
PASAAAPLHKSQSVPGAWPGASPLSSQPLSGSSRQSHPLTQSRSGYIPSGHSLGTPEPAP
RASLESVPPGRSYSPYDYQPCLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLP
GLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASD
GQYENQSPEATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYKEAFEEMEGTS
PSSPPPSGVRSPPGLAKTPLSALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSE
EPRSYVESVARTAVAGPRAQDSEPKSFSAPATQAYGHEIPLRNGTLGGSFVSPSPLSTSS
PILSADSTSVGSFPSGESSDQGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPTV
GSSYSSPDYSLQHFSSSPESQARAQFSVAGVHTVPGSPQARHRTVGTNTPPSPGFGRRAI
NPSMAAPSSPSLSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHPAGVYQVSGLH
NKVATTPGSPSLGRHPGAHQGNLASGLHSNAIASPGSPSLGRHLGGSGSVVPGSPCLDRH
VAYGGYSTPEDRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAFRQG
SPTPALPEKRRMSVGDRAGSLPNYATINGKVASPVPSGMSSPSGGSTVSFSHTLPDFSKY
SMPDNSPETRAKVKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLA
MKVSSPPPTIMQQNKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSLSALVYQHSII
PLALPCKLVIPNRDPTDESKDSSGPANSTADLLKQGAACNVLFINSVDMESLTGPQAISK
ATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMK
TEGGAPAKLFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVMLNAGQKR
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
coiled coil prediction for gi|11275669|gb|AAG33700.1|
sequence: 1680 amino acids, 0 residue(s) in coiled coil state
. | . | . | . | . | . 60
MSVSRTMEDS CELDLVYVTE RIIAVSFPST ANEENFRSNL REVAQMLKSK HGGNYLLFNL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~1111111 1111111111 ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 120
SERRPDITKL HAKVLEFGWP DLHTPALEKI CSICKAMDTW LNADPHNVVV LHNKGNRGRI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 180
GVVIAAYMHY SNISASADQA LDRFAMKRFY EDKIVPIGQP SQRRYVHYFS GLLSGSIKIN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 240
NKPLFLHHVI MHGIPNFESK GGCRPFLRIY QAMQPVYTSG IYNIPGDSQT SVCITIEPGL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 300
LLKGDILLKC YHKKFRSPAR DVIFRVQFHT CAIHDLGVVF GKEDLDDAFK DDRFPEYGKV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 360
EFVFSYGPEK IQGMEHLENG PSVSVDYNTS DPLIRWDSYD NFSGHRDDGM EEVVGHTQGP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 420
LDGSLYAKVK KKDSLHGSTG AVNATRPTLS ATPNHVEHTL SVSSDSGNST ASTKTDKTDE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 480
PVPGASSATA ALSPQEKREL DRLLSGFGLE REKQGAMYHT QHLRSRPAGG SAVPSSGRHV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 540
VPAQVHVNGG ALASERETDI LDDELPNQDG HSAGSMGTLS SLDGVTNTSE GGYPEALSPL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 600
TNGLDKSYPM EPMVNGGGYP YESASRAGPA HAGHTAPMRP SYSAQEGLAG YQREGPHPAW
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 660
PQPVTTSHYA HDPSGMFRSQ SFSEAEPQLP PAPVRGGSSR EAVQRGLNSW QQQQQQQQQP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 720
RPPPRQQERA HLESLVASRP SPQPLAETPI PSLPEFPRAA SQQEIEQSIE TLNMLMLDLE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~24 4444444444 4444444444 * 21 M'95 -w border
---------- ---------- ---------- --------bc defgabcdef gabcdefgab * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~13 3333333333 3333333333 * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~14 4444444444 4444444444 * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~12 2666666666 6666631111 * 14 M'95 -w local
. | . | . | . | . | . 780
PASAAAPLHK SQSVPGAWPG ASPLSSQPLS GSSRQSHPLT QSRSGYIPSG HSLGTPEPAP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
3311~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 840
RASLESVPPG RSYSPYDYQP CLAGPNQDFH SKSPASSSLP AFLPTTHSPP GPQQPPASLP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 900
GLTAQPLLSP KEATSDPSRT PEEEPLNLEG LVAHRVAGVQ AREKQPAEPP APLRRRAASD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 960
GQYENQSPEA TSPRSPGVRS PVQCVSPELA LTIALNPGGR PKEPHLHSYK EAFEEMEGTS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1020
PSSPPPSGVR SPPGLAKTPL SALGLKPHNP ADILLHPTGV TRRRIQPEED EGKVVVRLSE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1080
EPRSYVESVA RTAVAGPRAQ DSEPKSFSAP ATQAYGHEIP LRNGTLGGSF VSPSPLSTSS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1140
PILSADSTSV GSFPSGESSD QGPRTPTQPL LESGFRSGSL GQPSPSAQRN YQSSSPLPTV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1200
GSSYSSPDYS LQHFSSSPES QARAQFSVAG VHTVPGSPQA RHRTVGTNTP PSPGFGRRAI
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1260
NPSMAAPSSP SLSHHQMMGP PGTGFHGSTV SSPQSSAATT PGSPSLCRHP AGVYQVSGLH
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1320
NKVATTPGSP SLGRHPGAHQ GNLASGLHSN AIASPGSPSL GRHLGGSGSV VPGSPCLDRH
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1380
VAYGGYSTPE DRRPTLSRQS SASGYQAPST PSFPVSPAYY PGLSSPATSP SPDSAAFRQG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1440
SPTPALPEKR RMSVGDRAGS LPNYATINGK VASPVPSGMS SPSGGSTVSF SHTLPDFSKY
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1500
SMPDNSPETR AKVKFVQDTS KYWYKPEISR EQAIALLKDQ EPGAFIIRDS HSFRGAYGLA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1560
MKVSSPPPTI MQQNKKGDMT HELVRHFLIE TGPRGVKLKG CPNEPNFGSL SALVYQHSII
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1620
PLALPCKLVI PNRDPTDESK DSSGPANSTA DLLKQGAACN VLFINSVDME SLTGPQAISK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1680
ATSETLAADP TPAATIVHFK VSAQGITLTD NQRKLFFRRH YPLNTVTFCD LDPQERKWMK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
prediction of transmembrane regions with toppred2
***********************************
*TOPPREDM with eukaryotic function*
***********************************
tem24.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem24.___inter___
(1 sequences)
MSVSRTMEDSCELDLVYVTERIIAVSFPSTANEENFRSNLREVAQMLKSK
HGGNYLLFNLSERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTW
LNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASADQALDRFAMKRFY
EDKIVPIGQPSQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNFESK
GGCRPFLRIYQAMQPVYTSGIYNIPGDSQTSVCITIEPGLLLKGDILLKC
YHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSGHRDDGM
EEVVGHTQGPLDGSLYAKVKKKDSLHGSTGAVNATRPTLSATPNHVEHTL
SVSSDSGNSTASTKTDKTDEPVPGASSATAALSPQEKRELDRLLSGFGLE
REKQGAMYHTQHLRSRPAGGSAVPSSGRHVVPAQVHVNGGALASERETDI
LDDELPNQDGHSAGSMGTLSSLDGVTNTSEGGYPEALSPLTNGLDKSYPM
EPMVNGGGYPYESASRAGPAHAGHTAPMRPSYSAQEGLAGYQREGPHPAW
PQPVTTSHYAHDPSGMFRSQSFSEAEPQLPPAPVRGGSSREAVQRGLNSW
QQQQQQQQQPRPPPRQQERAHLESLVASRPSPQPLAETPIPSLPEFPRAA
SQQEIEQSIETLNMLMLDLEPASAAAPLHKSQSVPGAWPGASPLSSQPLS
GSSRQSHPLTQSRSGYIPSGHSLGTPEPAPRASLESVPPGRSYSPYDYQP
CLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLPGLTAQPLLSP
KEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASD
GQYENQSPEATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYK
EAFEEMEGTSPSSPPPSGVRSPPGLAKTPLSALGLKPHNPADILLHPTGV
TRRRIQPEEDEGKVVVRLSEEPRSYVESVARTAVAGPRAQDSEPKSFSAP
ATQAYGHEIPLRNGTLGGSFVSPSPLSTSSPILSADSTSVGSFPSGESSD
QGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPTVGSSYSSPDYS
LQHFSSSPESQARAQFSVAGVHTVPGSPQARHRTVGTNTPPSPGFGRRAI
NPSMAAPSSPSLSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHP
AGVYQVSGLHNKVATTPGSPSLGRHPGAHQGNLASGLHSNAIASPGSPSL
GRHLGGSGSVVPGSPCLDRHVAYGGYSTPEDRRPTLSRQSSASGYQAPST
PSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPTPALPEKRRMSVGDRAGS
LPNYATINGKVASPVPSGMSSPSGGSTVSFSHTLPDFSKYSMPDNSPETR
AKVKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLA
MKVSSPPPTIMQQNKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSL
SALVYQHSIIPLALPCKLVIPNRDPTDESKDSSGPANSTADLLKQGAACN
VLFINSVDMESLTGPQAISKATSETLAADPTPAATIVHFKVSAQGITLTD
NQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGAPAKLFGFVARKQGST
TDNACHLFAELDPNQPASAIVNFVSKVMLNAGQKR
(p)rokaryotic or (e)ukaryotic: e
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 32 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 733 753 0.675 Putative
2 813 833 0.768 Putative
3 1065 1085 1.217 Certain
4 1215 1235 0.710 Putative
5 1348 1368 0.898 Putative
6 1414 1434 1.051 Certain
7 1546 1566 0.990 Putative
Warning! Only printing 30 out of 32 structures
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6 7
Loop length 732 59 231 129 112 45 111 169
K+R profile + + + +
5.00 + 6.00 +
CYT-EXT prof 1.12 0.64 1.14 0.84
- 1.24 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -11.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.17
-> Orientation: N-out
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6
Loop length 732 59 231 129 112 45 301
K+R profile + + + +
5.00 + 6.00
CYT-EXT prof 1.12 0.64 1.14 0.73
- 1.24 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -11.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.38
-> Orientation: N-out
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 2 3 4 5 6 7
Loop length 812 231 129 112 45 111 169
K+R profile + + 6.00 +
+ + +
CYT-EXT prof 1.17 1.24 - 0.33
0.64 1.14 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.08
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 0.13
-> Orientation: N-out
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 1 3 4 5 6 7
Loop length 732 311 129 112 45 111 169
K+R profile + + 6.00 +
+ + +
CYT-EXT prof 1.12 1.24 - 0.33
0.80 1.14 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.04
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.08
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 3 4 5 6 7
Loop length 1064 129 112 45 111 169
K+R profile + + +
+ 6.00 +
CYT-EXT prof 1.08 1.14 0.84
1.24 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.20
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 1.49
-> Orientation: N-out
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 2 3 5 6 7
Loop length 812 231 262 45 111 169
K+R profile + + +
+ 6.00 +
CYT-EXT prof 1.17 1.28 0.84
0.64 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.30
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 2.32
-> Orientation: N-out
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 3 5 6 7
Loop length 732 311 262 45 111 169
K+R profile + + +
+ 6.00 +
CYT-EXT prof 1.12 1.28 0.84
0.80 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.14
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.11
-> Orientation: N-out
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 3 5 6 7
Loop length 1064 262 45 111 169
K+R profile + 6.00 +
+ +
CYT-EXT prof 1.08 - 0.33
1.28 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.73
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: -0.71
-> Orientation: N-in
----------------------------------------------------------------------
Structure 9
Transmembrane segments included in this structure:
Segment 2 3 4 5 6
Loop length 812 231 129 112 45 301
K+R profile + + 6.00
+ + +
CYT-EXT prof 1.17 1.24 -
0.64 1.14 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.09
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: -0.09
-> Orientation: N-in
----------------------------------------------------------------------
Structure 10
Transmembrane segments included in this structure:
Segment 1 3 4 5 6
Loop length 732 311 129 112 45 301
K+R profile + + 6.00
+ + +
CYT-EXT prof 1.12 1.24 -
0.80 1.14 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.04
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.30
-> Orientation: N-in
----------------------------------------------------------------------
Structure 11
Transmembrane segments included in this structure:
Segment 3 4 5 6
Loop length 1064 129 112 45 301
K+R profile + + +
+ 6.00
CYT-EXT prof 1.08 1.14 0.73
1.24 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.21
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 1.70
-> Orientation: N-out
----------------------------------------------------------------------
Structure 12
Transmembrane segments included in this structure:
Segment 2 3 5 6
Loop length 812 231 262 45 301
K+R profile + + +
+ 6.00
CYT-EXT prof 1.17 1.28 0.73
0.64 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.31
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 2.54
-> Orientation: N-out
----------------------------------------------------------------------
Structure 13
Transmembrane segments included in this structure:
Segment 1 3 5 6
Loop length 732 311 262 45 301
K+R profile + + +
+ 6.00
CYT-EXT prof 1.12 1.28 0.73
0.80 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.14
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 14
Transmembrane segments included in this structure:
Segment 3 5 6
Loop length 1064 262 45 301
K+R profile + 6.00
+ +
CYT-EXT prof 1.08 -
1.28 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.74
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: -0.93
-> Orientation: N-in
----------------------------------------------------------------------
Structure 15
Transmembrane segments included in this structure:
Segment 1 2 3 4 6 7
Loop length 732 59 231 129 178 111 169
K+R profile + + + +
5.00 + +
CYT-EXT prof 1.12 0.64 1.32 0.33
- 1.24 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 16
Transmembrane segments included in this structure:
Segment 1 2 3 6 7
Loop length 732 59 231 328 111 169
K+R profile + + +
5.00 + +
CYT-EXT prof 1.12 0.64 0.84
- 1.34 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.08
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 0.93
-> Orientation: N-out
----------------------------------------------------------------------
Structure 17
Transmembrane segments included in this structure:
Segment 1 2 3 4 6
Loop length 732 59 231 129 178 301
K+R profile + + +
5.00 + +
CYT-EXT prof 1.12 0.64 1.32
- 1.24 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.11
-> Orientation: N-out
----------------------------------------------------------------------
Structure 18
Transmembrane segments included in this structure:
Segment 1 2 3 6
Loop length 732 59 231 328 301
K+R profile + + +
5.00 +
CYT-EXT prof 1.12 0.64 0.73
- 1.34
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.08
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.15
-> Orientation: N-out
----------------------------------------------------------------------
Structure 19
Transmembrane segments included in this structure:
Segment 1 2 3 5 6 7
Loop length 732 59 231 262 45 111 169
K+R profile + + 6.00 +
5.00 + +
CYT-EXT prof 1.12 0.64 - 0.33
- 1.28 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 1.00
Tm probability: 0.06
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.03
-> Orientation: N-in
----------------------------------------------------------------------
Structure 20
Transmembrane segments included in this structure:
Segment 1 2 3 5 6
Loop length 732 59 231 262 45 301
K+R profile + + 6.00
5.00 + +
CYT-EXT prof 1.12 0.64 -
- 1.28 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 1.00
Tm probability: 0.06
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.25
-> Orientation: N-in
----------------------------------------------------------------------
Structure 21
Transmembrane segments included in this structure:
Segment 2 3 4 6 7
Loop length 812 231 129 178 111 169
K+R profile + + +
+ + +
CYT-EXT prof 1.17 1.24 0.84
0.64 1.32 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.11
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 0.96
-> Orientation: N-out
----------------------------------------------------------------------
Structure 22
Transmembrane segments included in this structure:
Segment 1 3 4 6 7
Loop length 732 311 129 178 111 169
K+R profile + + +
+ + +
CYT-EXT prof 1.12 1.24 0.84
0.80 1.32 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.05
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 0.75
-> Orientation: N-out
----------------------------------------------------------------------
Structure 23
Transmembrane segments included in this structure:
Segment 3 4 6 7
Loop length 1064 129 178 111 169
K+R profile + + +
+ +
CYT-EXT prof 1.08 1.32 0.33
1.24 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.27
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 0.65
-> Orientation: N-out
----------------------------------------------------------------------
Structure 24
Transmembrane segments included in this structure:
Segment 2 3 6 7
Loop length 812 231 328 111 169
K+R profile + + +
+ +
CYT-EXT prof 1.17 1.34 0.33
0.64 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.41
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 1.36
-> Orientation: N-out
----------------------------------------------------------------------
Structure 25
Transmembrane segments included in this structure:
Segment 1 3 6 7
Loop length 732 311 328 111 169
K+R profile + + +
+ +
CYT-EXT prof 1.12 1.34 0.33
0.80 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.18
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.15
-> Orientation: N-out
----------------------------------------------------------------------
Structure 26
Transmembrane segments included in this structure:
Segment 3 6 7
Loop length 1064 328 111 169
K+R profile + +
+ +
CYT-EXT prof 1.08 0.84
1.34 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.97
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 0.25
-> Orientation: N-out
----------------------------------------------------------------------
Structure 27
Transmembrane segments included in this structure:
Segment 2 3 4 6
Loop length 812 231 129 178 301
K+R profile + + +
+ +
CYT-EXT prof 1.17 1.24 0.73
0.64 1.32
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.12
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 1.18
-> Orientation: N-out
----------------------------------------------------------------------
Structure 28
Transmembrane segments included in this structure:
Segment 1 3 4 6
Loop length 732 311 129 178 301
K+R profile + + +
+ +
CYT-EXT prof 1.12 1.24 0.73
0.80 1.32
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.05
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 0.97
-> Orientation: N-out
----------------------------------------------------------------------
Structure 29
Transmembrane segments included in this structure:
Segment 3 4 6
Loop length 1064 129 178 301
K+R profile + +
+ +
CYT-EXT prof 1.08 1.32
1.24 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.28
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 0.43
-> Orientation: N-out
----------------------------------------------------------------------
Structure 30
Transmembrane segments included in this structure:
Segment 2 3 6
Loop length 812 231 328 301
K+R profile + +
+ +
CYT-EXT prof 1.17 1.34
0.64 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.42
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 1.15
-> Orientation: N-out
----------------------------------------------------------------------
"tem24" 1735
733 753 #f 0.675
813 833 #f 0.767708
1065 1085 #t 1.21667
1215 1235 #f 0.710417
1348 1368 #f 0.897917
1414 1434 #t 1.05104
1546 1566 #f 0.989583
************************************
*TOPPREDM with prokaryotic function*
************************************
tem24.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem24.___inter___
(1 sequences)
MSVSRTMEDSCELDLVYVTERIIAVSFPSTANEENFRSNLREVAQMLKSK
HGGNYLLFNLSERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTW
LNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASADQALDRFAMKRFY
EDKIVPIGQPSQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNFESK
GGCRPFLRIYQAMQPVYTSGIYNIPGDSQTSVCITIEPGLLLKGDILLKC
YHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDDAFKDDRFPEYGKV
EFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSGHRDDGM
EEVVGHTQGPLDGSLYAKVKKKDSLHGSTGAVNATRPTLSATPNHVEHTL
SVSSDSGNSTASTKTDKTDEPVPGASSATAALSPQEKRELDRLLSGFGLE
REKQGAMYHTQHLRSRPAGGSAVPSSGRHVVPAQVHVNGGALASERETDI
LDDELPNQDGHSAGSMGTLSSLDGVTNTSEGGYPEALSPLTNGLDKSYPM
EPMVNGGGYPYESASRAGPAHAGHTAPMRPSYSAQEGLAGYQREGPHPAW
PQPVTTSHYAHDPSGMFRSQSFSEAEPQLPPAPVRGGSSREAVQRGLNSW
QQQQQQQQQPRPPPRQQERAHLESLVASRPSPQPLAETPIPSLPEFPRAA
SQQEIEQSIETLNMLMLDLEPASAAAPLHKSQSVPGAWPGASPLSSQPLS
GSSRQSHPLTQSRSGYIPSGHSLGTPEPAPRASLESVPPGRSYSPYDYQP
CLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLPGLTAQPLLSP
KEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASD
GQYENQSPEATSPRSPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYK
EAFEEMEGTSPSSPPPSGVRSPPGLAKTPLSALGLKPHNPADILLHPTGV
TRRRIQPEEDEGKVVVRLSEEPRSYVESVARTAVAGPRAQDSEPKSFSAP
ATQAYGHEIPLRNGTLGGSFVSPSPLSTSSPILSADSTSVGSFPSGESSD
QGPRTPTQPLLESGFRSGSLGQPSPSAQRNYQSSSPLPTVGSSYSSPDYS
LQHFSSSPESQARAQFSVAGVHTVPGSPQARHRTVGTNTPPSPGFGRRAI
NPSMAAPSSPSLSHHQMMGPPGTGFHGSTVSSPQSSAATTPGSPSLCRHP
AGVYQVSGLHNKVATTPGSPSLGRHPGAHQGNLASGLHSNAIASPGSPSL
GRHLGGSGSVVPGSPCLDRHVAYGGYSTPEDRRPTLSRQSSASGYQAPST
PSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPTPALPEKRRMSVGDRAGS
LPNYATINGKVASPVPSGMSSPSGGSTVSFSHTLPDFSKYSMPDNSPETR
AKVKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLA
MKVSSPPPTIMQQNKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSL
SALVYQHSIIPLALPCKLVIPNRDPTDESKDSSGPANSTADLLKQGAACN
VLFINSVDMESLTGPQAISKATSETLAADPTPAATIVHFKVSAQGITLTD
NQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGAPAKLFGFVARKQGST
TDNACHLFAELDPNQPASAIVNFVSKVMLNAGQKR
(p)rokaryotic or (e)ukaryotic: p
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 32 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 733 753 0.675 Putative
2 813 833 0.768 Putative
3 1065 1085 1.217 Certain
4 1215 1235 0.710 Putative
5 1348 1368 0.898 Putative
6 1414 1434 1.051 Certain
7 1546 1566 0.990 Putative
Warning! Only printing 30 out of 32 structures
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6 7
Loop length 732 59 231 129 112 45 111 169
K+R profile + + + +
5.00 + 6.00 +
CYT-EXT prof 1.12 0.64 1.14 0.84
- 1.24 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -11.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.17
-> Orientation: N-out
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 2 3 4 5 6
Loop length 732 59 231 129 112 45 301
K+R profile + + + +
5.00 + 6.00
CYT-EXT prof 1.12 0.64 1.14 0.73
- 1.24 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -11.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.38
-> Orientation: N-out
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 2 3 4 5 6 7
Loop length 812 231 129 112 45 111 169
K+R profile + + 6.00 +
+ + +
CYT-EXT prof 1.17 1.24 - 0.33
0.64 1.14 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.08
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 0.13
-> Orientation: N-out
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 1 3 4 5 6 7
Loop length 732 311 129 112 45 111 169
K+R profile + + 6.00 +
+ + +
CYT-EXT prof 1.12 1.24 - 0.33
0.80 1.14 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.04
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.08
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 3 4 5 6 7
Loop length 1064 129 112 45 111 169
K+R profile + + +
+ 6.00 +
CYT-EXT prof 1.08 1.14 0.84
1.24 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.20
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 1.49
-> Orientation: N-out
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 2 3 5 6 7
Loop length 812 231 262 45 111 169
K+R profile + + +
+ 6.00 +
CYT-EXT prof 1.17 1.28 0.84
0.64 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.30
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 2.32
-> Orientation: N-out
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 3 5 6 7
Loop length 732 311 262 45 111 169
K+R profile + + +
+ 6.00 +
CYT-EXT prof 1.12 1.28 0.84
0.80 - 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.14
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.11
-> Orientation: N-out
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 3 5 6 7
Loop length 1064 262 45 111 169
K+R profile + 6.00 +
+ +
CYT-EXT prof 1.08 - 0.33
1.28 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.73
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: -0.71
-> Orientation: N-in
----------------------------------------------------------------------
Structure 9
Transmembrane segments included in this structure:
Segment 2 3 4 5 6
Loop length 812 231 129 112 45 301
K+R profile + + 6.00
+ + +
CYT-EXT prof 1.17 1.24 -
0.64 1.14 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.09
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: -0.09
-> Orientation: N-in
----------------------------------------------------------------------
Structure 10
Transmembrane segments included in this structure:
Segment 1 3 4 5 6
Loop length 732 311 129 112 45 301
K+R profile + + 6.00
+ + +
CYT-EXT prof 1.12 1.24 -
0.80 1.14 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.04
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.30
-> Orientation: N-in
----------------------------------------------------------------------
Structure 11
Transmembrane segments included in this structure:
Segment 3 4 5 6
Loop length 1064 129 112 45 301
K+R profile + + +
+ 6.00
CYT-EXT prof 1.08 1.14 0.73
1.24 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.21
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 1.70
-> Orientation: N-out
----------------------------------------------------------------------
Structure 12
Transmembrane segments included in this structure:
Segment 2 3 5 6
Loop length 812 231 262 45 301
K+R profile + + +
+ 6.00
CYT-EXT prof 1.17 1.28 0.73
0.64 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.31
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 2.54
-> Orientation: N-out
----------------------------------------------------------------------
Structure 13
Transmembrane segments included in this structure:
Segment 1 3 5 6
Loop length 732 311 262 45 301
K+R profile + + +
+ 6.00
CYT-EXT prof 1.12 1.28 0.73
0.80 -
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -6.00
Tm probability: 0.14
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 2.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 14
Transmembrane segments included in this structure:
Segment 3 5 6
Loop length 1064 262 45 301
K+R profile + 6.00
+ +
CYT-EXT prof 1.08 -
1.28 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 6.00
Tm probability: 0.74
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: -0.93
-> Orientation: N-in
----------------------------------------------------------------------
Structure 15
Transmembrane segments included in this structure:
Segment 1 2 3 4 6 7
Loop length 732 59 231 129 178 111 169
K+R profile + + + +
5.00 + +
CYT-EXT prof 1.12 0.64 1.32 0.33
- 1.24 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.33
-> Orientation: N-out
----------------------------------------------------------------------
Structure 16
Transmembrane segments included in this structure:
Segment 1 2 3 6 7
Loop length 732 59 231 328 111 169
K+R profile + + +
5.00 + +
CYT-EXT prof 1.12 0.64 0.84
- 1.34 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.08
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 0.93
-> Orientation: N-out
----------------------------------------------------------------------
Structure 17
Transmembrane segments included in this structure:
Segment 1 2 3 4 6
Loop length 732 59 231 129 178 301
K+R profile + + +
5.00 + +
CYT-EXT prof 1.12 0.64 1.32
- 1.24 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.02
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.11
-> Orientation: N-out
----------------------------------------------------------------------
Structure 18
Transmembrane segments included in this structure:
Segment 1 2 3 6
Loop length 732 59 231 328 301
K+R profile + + +
5.00 +
CYT-EXT prof 1.12 0.64 0.73
- 1.34
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: -5.00
Tm probability: 0.08
-> Orientation: N-out
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.15
-> Orientation: N-out
----------------------------------------------------------------------
Structure 19
Transmembrane segments included in this structure:
Segment 1 2 3 5 6 7
Loop length 732 59 231 262 45 111 169
K+R profile + + 6.00 +
5.00 + +
CYT-EXT prof 1.12 0.64 - 0.33
- 1.28 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 1.00
Tm probability: 0.06
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.03
-> Orientation: N-in
----------------------------------------------------------------------
Structure 20
Transmembrane segments included in this structure:
Segment 1 2 3 5 6
Loop length 732 59 231 262 45 301
K+R profile + + 6.00
5.00 + +
CYT-EXT prof 1.12 0.64 -
- 1.28 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 1.00
Tm probability: 0.06
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: -0.25
-> Orientation: N-in
----------------------------------------------------------------------
Structure 21
Transmembrane segments included in this structure:
Segment 2 3 4 6 7
Loop length 812 231 129 178 111 169
K+R profile + + +
+ + +
CYT-EXT prof 1.17 1.24 0.84
0.64 1.32 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.11
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 0.96
-> Orientation: N-out
----------------------------------------------------------------------
Structure 22
Transmembrane segments included in this structure:
Segment 1 3 4 6 7
Loop length 732 311 129 178 111 169
K+R profile + + +
+ + +
CYT-EXT prof 1.12 1.24 0.84
0.80 1.32 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.05
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 0.75
-> Orientation: N-out
----------------------------------------------------------------------
Structure 23
Transmembrane segments included in this structure:
Segment 3 4 6 7
Loop length 1064 129 178 111 169
K+R profile + + +
+ +
CYT-EXT prof 1.08 1.32 0.33
1.24 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.27
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 0.65
-> Orientation: N-out
----------------------------------------------------------------------
Structure 24
Transmembrane segments included in this structure:
Segment 2 3 6 7
Loop length 812 231 328 111 169
K+R profile + + +
+ +
CYT-EXT prof 1.17 1.34 0.33
0.64 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.41
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 1.36
-> Orientation: N-out
----------------------------------------------------------------------
Structure 25
Transmembrane segments included in this structure:
Segment 1 3 6 7
Loop length 732 311 328 111 169
K+R profile + + +
+ +
CYT-EXT prof 1.12 1.34 0.33
0.80 0.84
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.18
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 1.15
-> Orientation: N-out
----------------------------------------------------------------------
Structure 26
Transmembrane segments included in this structure:
Segment 3 6 7
Loop length 1064 328 111 169
K+R profile + +
+ +
CYT-EXT prof 1.08 0.84
1.34 0.33
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.97
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 0.25
-> Orientation: N-out
----------------------------------------------------------------------
Structure 27
Transmembrane segments included in this structure:
Segment 2 3 4 6
Loop length 812 231 129 178 301
K+R profile + + +
+ +
CYT-EXT prof 1.17 1.24 0.73
0.64 1.32
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.12
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 1.18
-> Orientation: N-out
----------------------------------------------------------------------
Structure 28
Transmembrane segments included in this structure:
Segment 1 3 4 6
Loop length 732 311 129 178 301
K+R profile + + +
+ +
CYT-EXT prof 1.12 1.24 0.73
0.80 1.32
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.05
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -3.00
(NEG-POS)/(NEG+POS): 0.0909
NEG: 84.0000
POS: 70.0000
-> Orientation: N-out
CYT-EXT difference: 0.97
-> Orientation: N-out
----------------------------------------------------------------------
Structure 29
Transmembrane segments included in this structure:
Segment 3 4 6
Loop length 1064 129 178 301
K+R profile + +
+ +
CYT-EXT prof 1.08 1.32
1.24 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.28
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): 2.00
(NEG-POS)/(NEG+POS): 0.0691
NEG: 116.0000
POS: 101.0000
-> Orientation: N-in
CYT-EXT difference: 0.43
-> Orientation: N-out
----------------------------------------------------------------------
Structure 30
Transmembrane segments included in this structure:
Segment 2 3 6
Loop length 812 231 328 301
K+R profile + +
+ +
CYT-EXT prof 1.17 1.34
0.64 0.73
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 0.00
Tm probability: 0.42
-> Orientation: undecided
Charge-difference over N-terminal Tm (+-15 residues): -1.00
(NEG-POS)/(NEG+POS): 0.0798
NEG: 88.0000
POS: 75.0000
-> Orientation: N-out
CYT-EXT difference: 1.15
-> Orientation: N-out
----------------------------------------------------------------------
"tem24" 1735
733 753 #f 0.675
813 833 #f 0.767708
1065 1085 #t 1.21667
1215 1235 #f 0.710417
1348 1368 #f 0.897917
1414 1434 #t 1.05104
1546 1566 #f 0.989583
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
NOW EXECUTING: /bio_software/1D/stat/saps/saps-stroh/SAPS.SSPA/saps /people/maria/tem24.___saps___
SAPS. Version of April 11, 1996.
Date run: Tue Dec 12 21:51:37 2000
File: /people/maria/tem24.___saps___
ID gi|11275669|gb|AAG33700.1|
DE tensin [Homo sapiens]
number of residues: 1735; molecular weight: 185.7 kdal
1 MSVSRTMEDS CELDLVYVTE RIIAVSFPST ANEENFRSNL REVAQMLKSK HGGNYLLFNL
61 SERRPDITKL HAKVLEFGWP DLHTPALEKI CSICKAMDTW LNADPHNVVV LHNKGNRGRI
121 GVVIAAYMHY SNISASADQA LDRFAMKRFY EDKIVPIGQP SQRRYVHYFS GLLSGSIKIN
181 NKPLFLHHVI MHGIPNFESK GGCRPFLRIY QAMQPVYTSG IYNIPGDSQT SVCITIEPGL
241 LLKGDILLKC YHKKFRSPAR DVIFRVQFHT CAIHDLGVVF GKEDLDDAFK DDRFPEYGKV
301 EFVFSYGPEK IQGMEHLENG PSVSVDYNTS DPLIRWDSYD NFSGHRDDGM EEVVGHTQGP
361 LDGSLYAKVK KKDSLHGSTG AVNATRPTLS ATPNHVEHTL SVSSDSGNST ASTKTDKTDE
421 PVPGASSATA ALSPQEKREL DRLLSGFGLE REKQGAMYHT QHLRSRPAGG SAVPSSGRHV
481 VPAQVHVNGG ALASERETDI LDDELPNQDG HSAGSMGTLS SLDGVTNTSE GGYPEALSPL
541 TNGLDKSYPM EPMVNGGGYP YESASRAGPA HAGHTAPMRP SYSAQEGLAG YQREGPHPAW
601 PQPVTTSHYA HDPSGMFRSQ SFSEAEPQLP PAPVRGGSSR EAVQRGLNSW QQQQQQQQQP
661 RPPPRQQERA HLESLVASRP SPQPLAETPI PSLPEFPRAA SQQEIEQSIE TLNMLMLDLE
721 PASAAAPLHK SQSVPGAWPG ASPLSSQPLS GSSRQSHPLT QSRSGYIPSG HSLGTPEPAP
781 RASLESVPPG RSYSPYDYQP CLAGPNQDFH SKSPASSSLP AFLPTTHSPP GPQQPPASLP
841 GLTAQPLLSP KEATSDPSRT PEEEPLNLEG LVAHRVAGVQ AREKQPAEPP APLRRRAASD
901 GQYENQSPEA TSPRSPGVRS PVQCVSPELA LTIALNPGGR PKEPHLHSYK EAFEEMEGTS
961 PSSPPPSGVR SPPGLAKTPL SALGLKPHNP ADILLHPTGV TRRRIQPEED EGKVVVRLSE
1021 EPRSYVESVA RTAVAGPRAQ DSEPKSFSAP ATQAYGHEIP LRNGTLGGSF VSPSPLSTSS
1081 PILSADSTSV GSFPSGESSD QGPRTPTQPL LESGFRSGSL GQPSPSAQRN YQSSSPLPTV
1141 GSSYSSPDYS LQHFSSSPES QARAQFSVAG VHTVPGSPQA RHRTVGTNTP PSPGFGRRAI
1201 NPSMAAPSSP SLSHHQMMGP PGTGFHGSTV SSPQSSAATT PGSPSLCRHP AGVYQVSGLH
1261 NKVATTPGSP SLGRHPGAHQ GNLASGLHSN AIASPGSPSL GRHLGGSGSV VPGSPCLDRH
1321 VAYGGYSTPE DRRPTLSRQS SASGYQAPST PSFPVSPAYY PGLSSPATSP SPDSAAFRQG
1381 SPTPALPEKR RMSVGDRAGS LPNYATINGK VASPVPSGMS SPSGGSTVSF SHTLPDFSKY
1441 SMPDNSPETR AKVKFVQDTS KYWYKPEISR EQAIALLKDQ EPGAFIIRDS HSFRGAYGLA
1501 MKVSSPPPTI MQQNKKGDMT HELVRHFLIE TGPRGVKLKG CPNEPNFGSL SALVYQHSII
1561 PLALPCKLVI PNRDPTDESK DSSGPANSTA DLLKQGAACN VLFINSVDME SLTGPQAISK
1621 ATSETLAADP TPAATIVHFK VSAQGITLTD NQRKLFFRRH YPLNTVTFCD LDPQERKWMK
1681 TEGGAPAKLF GFVARKQGST TDNACHLFAE LDPNQPASAI VNFVSKVMLN AGQKR
--------------------------------------------------------------------------------
COMPOSITIONAL ANALYSIS (extremes relative to: swp23s)
A :141( 8.1%); C : 16( 0.9%); D : 69( 4.0%); E : 89( 5.1%); F : 52( 3.0%)
G :143( 8.2%); H : 62( 3.6%); I : 51( 2.9%); K : 65( 3.7%); L :133( 7.7%)
M : 31( 1.8%); N : 55( 3.2%); P+ :189(10.9%); Q : 83( 4.8%); R : 94( 5.4%)
S+ :222(12.8%); T : 91( 5.2%); V : 93( 5.4%); W : 8( 0.5%); Y : 48( 2.8%)
KR : 159 ( 9.2%); ED : 158 ( 9.1%); AGP : 473 ( 27.3%);
KRED : 317 ( 18.3%); KR-ED : 1 ( 0.1%); FIKMNY : 302 ( 17.4%);
LVIFM : 360 ( 20.7%); ST : 313 ( 18.0%).
--------------------------------------------------------------------------------
CHARGE DISTRIBUTIONAL ANALYSIS
1 0000+00--0 0-0-00000- +000000000 00--00+000 +-00000+0+ 0000000000
61 0-++0-00+0 00+00-0000 -000000-+0 0000+00-00 000-000000 000+00+0+0
121 0000000000 0000000-00 0-+000++00 --+0000000 00++000000 0000000+00
181 0+00000000 0000000-0+ 000+000+00 0000000000 000000-000 000000-000
241 00+0-000+0 00++0+000+ -000+00000 0000-00000 0+--0--00+ --+00-00+0
301 -0000000-+ 0000-00-00 00000-0000 -000+0-00- 00000+--00 --00000000
361 0-00000+0+ ++-0000000 00000+0000 000000-000 0000-00000 000+0-+0--
421 0000000000 00000-++-0 -+0000000- +-+0000000 000+0+0000 0000000+00
481 0000000000 0000-+-0-0 0---0000-0 0000000000 00-000000- 0000-00000
541 0000-+0000 -000000000 0-000+0000 00000000+0 00000-0000 00+-000000
601 0000000000 0-00000+00 000-0-0000 0000+0000+ -000+00000 0000000000
661 +000+00-+0 00-00000+0 000000-000 0000-00+00 000-0-000- 0000000-0-
721 000000000+ 0000000000 0000000000 000+000000 00+0000000 000000-000
781 +000-00000 +00000-000 0000000-00 0+00000000 0000000000 0000000000
841 0000000000 +-000-00+0 0---0000-0 0000+00000 0+-+000-00 000+++000-
901 000-0000-0 000+0000+0 0000000-00 000000000+ 0+-000000+ -00--0-000
961 000000000+ 000000+000 00000+0000 0-00000000 0+++000--- -0+000+00-
1021 -0+000-000 +000000+00 -0-0+00000 0000000-00 0+00000000 0000000000
1081 00000-0000 000000-00- 000+000000 0-000+0000 00000000+0 0000000000
1141 0000000-00 00000000-0 00+0000000 0000000000 +0+0000000 000000++00
1201 0000000000 0000000000 0000000000 0000000000 0000000+00 0000000000
1261 0+00000000 000+000000 0000000000 0000000000 0+00000000 0000000-+0
1321 000000000- -++0000+00 0000000000 0000000000 0000000000 00-0000+00
1381 0000000-++ +0000-+000 000000000+ 0000000000 0000000000 00000-00+0
1441 000-000-0+ 0+0+000-00 +000+0-00+ -000000+-0 -000000+-0 000+000000
1501 0+00000000 0000++0-00 0-00+0000- 000+00+0+0 000-000000 0000000000
1561 000000+000 00+-00--0+ -000000000 -00+000000 0000000-0- 000000000+
1621 000-0000-0 000000000+ 000000000- 00++000++0 000000000- 0-00-++00+
1681 0-00000+00 0000++0000 0-0000000- 0-00000000 00000+0000 000++
A. CHARGE CLUSTERS.
Positive charge clusters (cmin = 10/30 or 13/45 or 16/60): none
Negative charge clusters (cmin = 10/30 or 13/45 or 16/60): none
Mixed charge clusters (cmin = 16/30 or 21/45 or 25/60): none
B. HIGH SCORING (UN)CHARGED SEGMENTS.
There are no high scoring positive charge segments.
There are no high scoring negative charge segments.
There are no high scoring mixed charge segments.
There are no high scoring uncharged segments.
C. CHARGE RUNS AND PATTERNS.
pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)|
lmin0 5 | 5 | 7 | 51 | 10 | 10 | 13 | 12 | 12 | 16 | 8 | 11 |
lmin1 6 | 6 | 9 | 62 | 12 | 12 | 16 | 15 | 15 | 20 | 10 | 13 |
lmin2 8 | 8 | 10 | 69 | 14 | 14 | 18 | 17 | 17 | 22 | 11 | 15 |
(Significance level: 0.010000; Minimal displayed length: 6)
(0) 62(1,0,0); at 1199-1261: see sequence above
(3. quartile)
G: 7 (11.1%); S: 13 (20.6%); P: 9 (14.3%); ST: 17 (27.0%);
Run count statistics:
+ runs >= 3: 4, at 370; 894; 1002; 1389;
- runs >= 3: 3, at 502; 862; 1008;
* runs >= 5: 0
0 runs >= 34: 3, at 813; 1199; 1339;
--------------------------------------------------------------------------------
DISTRIBUTION OF OTHER AMINO ACID TYPES
1. HIGH SCORING SEGMENTS.
There are no high scoring hydrophobic segments.
There are no high scoring transmembrane segments.
2. SPACINGS OF C.
H2N-10-C-79-C-2-C-108-C-29-C-16-C-20-C-529-C-122-C-322-C-68-C-224-C-24-C-32-C-69-C-35-C-30-COOH
2*. SPACINGS OF C and H. (additional deluxe function for ALEX)
H2N-10-C-39-H-19-H-11-H-7-C-2-C-11-H-5-H-16-H-37-H-19-H-H-3-H-10-C-29-C-16-C-1-H-16-H-1-C-2-H-41-H-28-H-10-H-19-H-18-H-2-H-60-H-2-H-16-H-6-H-24-H-59-H-2-H-22-H-10-H-2-H-59-H-57-H-27-H-13-H-29-C-8-H-16-H-46-H-49-C-20-H-1-H-40-H-7-H-60-H-95-H-18-H-9-H-31-H-H-10-H-20-C-1-H-10-H-14-H-3-H-8-H-14-H-12-C-3-H-111-H-58-H-29-H-4-H-14-C-15-H-8-C-32-C-38-H-21-H-8-C-35-C-H-29-COOH
--------------------------------------------------------------------------------
REPETITIVE STRUCTURES.
A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet.
Repeat core block length: 5
Aligned matching blocks:
[ 386- 390] RPTLS
[1333-1337] RPTLS
______________________________
[ 912- 913]-( 3)-[ 917- 921]
[ 963- 964]-( 3)-[ 968- 972]
[ 917- 921] GVRSP
[ 968- 972] GVRSP
______________________________
[ 962- 966] SSPPP
[1504-1508] SSPPP
______________________________
[1174-1178] VPGSP
[1311-1315] VPGSP
______________________________
[1227-1231]
GSTVS
[1425-1429] GSTVS
______________________________
[1238-1250] ATTPGSPSLCRHP
[1264-1276] ATTPGSPSLGRHP
______________________________
[1241-1250] PGSPSLCRHP
[1267-1276] PGSPSLGRHP
[1295-1303] PGSPSLGRH
[1312-1320] PGSPCLDRH
with superset:
[1207-1212] PSSPSL
[1241-1246] PGSPSL
[1267-1272] PGSPSL
[1295-1300] PGSPSL
[1312-1317] PGSPCL
B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet.
(i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C)
Repeat core block length: 9
Aligned matching blocks:
[1240-1252] opsopoic+hpss
[1266-1278] opsopois+hpss
[1294-1306] opsopois+hiss
--------------------------------------------------------------------------------
MULTIPLETS.
A. AMINO ACID ALPHABET.
1. Total number of amino acid multiplets: 115 (Expected range: 79--141)
2. Histogram of spacings between consecutive amino acid multiplets:
(1-5) 41 (6-10) 23 (11-20) 20 (>=21) 32
3. Clusters of amino acid multiplets (cmin = 12/30 or 15/45 or 18/60): none
4. Long amino acid multiplets (>= 5; Letter/Length/Position):
Q/9/651
B. CHARGE ALPHABET.
1. Total number of charge multiplets: 33 (Expected range: 11-- 42)
17 +plets (f+: 9.2%), 16 -plets (f-: 9.1%)
Total number of charge altplets: 37 (Critical number: 47)
2. Histogram of spacings between consecutive charge multiplets:
(1-5) 8 (6-10) 2 (11-20) 5 (>=21) 19
--------------------------------------------------------------------------------
PERIODICITY ANALYSIS.
A. AMINO ACID ALPHABET (core: 4; !-core: 5)
Location Period Element Copies Core Errors
195- 234 10 P......... 4 4 0
403- 414 3 S.. 4 4 0
510- 537 7 G...... 4 4 0
520- 555 9 S........ 4 4 0
651- 659 1 Q 9 9 ! 0
748- 797 10 P...S..... 5 5 ! /0/./././1/./././././
820- 859 10 P.......S. 4 4 /0/./././././././1/./
1069-1093 5 S..S. 5 5 ! /0/././1/./
1089-1100 3 S.. 4 4 0
1126-1157 8 S....... 4 4 0
1145-1164 5 S.... 4 4 0
1348-1359 3 P.. 4 4 0
1358-1393 9 A........ 4 4 0
1417-1431 3 S.. 5 5 ! 0
B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 6)
and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core: 9)
Location Period Element Copies Core Errors
47- 106 10 i.0.00..0. 6 6 /0/./2/./2/2/././2/./
284- 301 3 *.. 6 6 0
--------------------------------------------------------------------------------
SPACING ANALYSIS.
Location (Quartile) Spacing Rank P-value Interpretation
546- 730 (2.) K( 184)K 2 of 66 0.0003 large 2. maximal spacing
1045-1262 (3.) K( 217)K 1 of 66 0.0093 large 1. maximal spacing
1159-1318 (3.) -( 159)- 1 of 159 0.0000 large maximal spacing
1159-1330 (3.) E( 171)E 1 of 90 0.0068 large maximal spacing
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Pfam (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/Pfam
Sequence file: tem24
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SH2 Src homology domain 2 45.5 1.6e-14 1
zf-UBP Zn-finger in ubiquitin-hydrolases and o 0.9 75 1
SAM_decarbox Adenosylmethionine decarboxylase 0.1 39 1
Xylose_isom Xylose isomerase -0.1 37 1
Cu_amine_oxid Copper amine oxidase -0.3 22 1
IGPS Indole-3-glycerol phosphate synthases -0.9 94 1
VMAT Vesicular monoamine transporter -1.3 50 1
rhv picornavirus capsid protein -1.4 94 1
DUF23 Domain of unknown function -1.7 47 1
FATC FATC domain -8.6 94 1
TIMP Tissue inhibitor of metalloproteinases -127.9 65 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-UBP 1/1 91 102 .. 1 14 [. 0.9 75
Xylose_isom 1/1 324 347 .. 266 288 .. -0.1 37
FATC 1/1 664 696 .. 1 33 [] -8.6 94
SAM_decarbox 1/1 695 724 .. 169 201 .. 0.1 39
IGPS 1/1 868 894 .. 1 40 [. -0.9 94
DUF23 1/1 1000 1017 .. 331 348 .. -1.7 47
rhv 1/1 1017 1058 .. 1 36 [. -1.4 94
VMAT 1/1 1086 1104 .. 584 602 .] -1.3 50
Cu_amine_oxid 1/1 1201 1211 .. 760 770 .] -0.3 22
SH2 1/1 1463 1557 .. 1 79 [] 45.5 1.6e-14
TIMP 1/1 1562 1702 .. 1 186 [] -127.9 65
Alignments of top-scoring domains:
zf-UBP: domain 1 of 1, from 91 to 102: score 0.9, E = 75
*->CvstCgltenlWlC<-*
C s C+ +++Wl+
gi|1127566 91 C-SICK-AMDTWLN 102
Xylose_isom: domain 1 of 1, from 324 to 347: score -0.1, E = 37
*->sIDaNqGdpllgwD.tDlfpGtdv<-*
s+D N+ dpl++wD+ D f+G+++
gi|1127566 324 SVDYNTSDPLIRWDsYDNFSGHRD 347
FATC: domain 1 of 1, from 664 to 696: score -8.6, E = 94
*->epLsvegqvndLIqqATspeNLcrmYiGWcPwf<-*
+ ++ ++++L+ + sp+ L++++i P f
gi|1127566 664 PRQQERAHLESLVASRPSPQPLAETPIPSLPEF 696
SAM_decarbox: domain 1 of 1, from 695 to 724: score 0.1, E = 39
*->sappsniekeseviedPdyTLEmlMtGLDkeka<-*
++p++ +++e ie+ ++TL mlM +L ++ a
gi|1127566 695 EFPRA--ASQQE-IEQSIETLNMLMLDLEPASA 724
IGPS: domain 1 of 1, from 868 to 894: score -0.9, E = 94
*->ILekIvadkreeVaaakarppltladLqalldlrlapptr<-*
Le +va++ + V+a++++p +++ p r
gi|1127566 868 -LEGLVAHRVAGVQAREKQPA------------EPPAPLR 894
DUF23: domain 1 of 1, from 1000 to 1017: score -1.7, E = 47
*->fsslkssntvktGKsvVr<-*
+++ ++++++++GK+vVr
gi|1127566 1000 VTRRRIQPEEDEGKVVVR 1017
rhv: domain 1 of 1, from 1017 to 1058: score -1.4, E = 94
*->gppveatgrgsdrvfltTd.........pnS.sitAlqavetgavt<
++ e ++ +v+ t++ +++ ++++p S s++A+q ++g ++
gi|1127566 1017 RLSEEPRS-YVESVARTAVagpraqdsePKSfSAPATQ--AYG-HE 1058
-*
gi|1127566 - -
VMAT: domain 1 of 1, from 1086 to 1104: score -1.3, E = 50
*->tssPqgefpageddeeeqd<-*
+s + g+fp ge++++++
gi|1127566 1086 DSTSVGSFPSGESSDQGPR 1104
Cu_amine_oxid: domain 1 of 1, from 1201 to 1211: score -0.3, E = 22
*->nPsLdvpsska<-*
nPs+++pss++
gi|1127566 1201 NPSMAAPSSPS 1211
SH2: domain 1 of 1, from 1463 to 1557: score 45.5, E = 1.6e-14
*->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgp.
Wy + IsR++A lL+ +++G+F++R+S s G Y L + +p+
gi|1127566 1463 WYKPEISREQAIALLKD--QEPGAFIIRDSHSFRGAYGLAMKVSSPp 1507
...............rVkHyrIqsldng.gyyitggvk.FssLpeLvehY
++ +++++++ +++ V+H+ I + ++g ++ +++ +F+sL+ Lv+ +
gi|1127566 1508 ptimqqnkkgdmtheLVRHFLIETGPRGvKLKGCPNEPnFGSLSALVYQH 1557
<-*
gi|1127566 - -
TIMP: domain 1 of 1, from 1562 to 1702: score -127.9, E = 65
*->eACsCaPpHPQqAFCNSDlVIRAKvvgeKeVnegtlyYadtiKtlrY
A C + P N D K ++ + n++++
gi|1127566 1562 LALPCKLVIP-----NRDPTDESKDSSGPA-NSTADL---------- 1592
eIKqiKMyKGFekvGdAkDiqYIYTpaseSLCGvkLevnnRkkeYLiTGr
Kq G A + +I +eSL G + e L +
gi|1127566 1593 -LKQ----------GAACNVLFINSVDMESLTGPQAISKA-TSETLAADP 1630
vesDGklhItlCnFiepWdtLSlaQrkg.LnhrYhlGCgvCkItpCysiP
+ +h + tL+ Qrk + +Y l+ ++t C P
gi|1127566 1631 TPAATIVHFKV---SAQGITLTDNQRKLfFRRHYPLN----TVTFCDLDP 1673
CkisSpnECLWTDwLlegsekGyQakHyACikrvdGlCsW<-*
E W+ +eg+ + ak + r+ G+ +
gi|1127566 1674 ------QERKWMK--TEGGAP---AKLFGFVARKQGSTTD 1702
//
Start with PfamFrag (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/PfamFrag
Sequence file: tem24
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SH2 Src homology domain 2 45.5 1.6e-14 1
ER Enhancer of rudimentary 2.6 16 1
MIase Muconolactone delta-isomerase 1.6 42 1
zf-UBP Zn-finger in ubiquitin-hydrolases and 0.9 75 1
SAM_decarbox Adenosylmethionine decarboxylase 0.1 39 1
Xylose_isom Xylose isomerase -0.1 37 1
Cu_amine_oxid Copper amine oxidase -0.3 22 1
DHquinase_I Type I 3-dehydroquinase -0.6 85 1
IGPS Indole-3-glycerol phosphate synthases -0.9 94 1
Transposase_2 Probable transposase -0.9 91 1
Histidinol_dh Histidinol dehydrogenase -1.0 62 1
VMAT Vesicular monoamine transporter -1.3 50 1
rhv picornavirus capsid protein -1.4 94 1
Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzy -1.4 88 1
DUF23 Domain of unknown function -1.7 47 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Transposase_2 1/1 43 51 .. 286 294 .] -0.9 91
zf-UBP 1/1 91 102 .. 1 14 [. 0.9 75
Cys_Met_Meta_PP 1/1 282 290 .. 420 428 .] -1.4 88
Xylose_isom 1/1 324 347 .. 266 288 .. -0.1 37
SAM_decarbox 1/1 695 724 .. 169 201 .. 0.1 39
Histidinol_dh 1/1 867 884 .. 410 426 .] -1.0 62
IGPS 1/1 868 894 .. 1 40 [. -0.9 94
DUF23 1/1 1000 1017 .. 331 348 .. -1.7 47
rhv 1/1 1017 1058 .. 1 36 [. -1.4 94
VMAT 1/1 1086 1104 .. 584 602 .] -1.3 50
DHquinase_I 1/1 1121 1131 .. 236 246 .] -0.6 85
Cu_amine_oxid 1/1 1201 1211 .. 760 770 .] -0.3 22
MIase 1/1 1246 1253 .. 87 94 .] 1.6 42
SH2 1/1 1463 1557 .. 1 79 [] 45.5 1.6e-14
ER 1/1 1550 1559 .. 67 76 .. 2.6 16
Alignments of top-scoring domains:
Transposase_2: domain 1 of 1, from 43 to 51: score -0.9, E = 91
*->vknMvrnak<-*
v++M+++++
gi|1127566 43 VAQMLKSKH 51
zf-UBP: domain 1 of 1, from 91 to 102: score 0.9, E = 75
*->CvstCgltenlWlC<-*
C s C+ +++Wl+
gi|1127566 91 C-SICK-AMDTWLN 102
Cys_Met_Meta_PP: domain 1 of 1, from 282 to 290: score -1.4, E = 88
*->iaDLeqALe<-*
++DL+ A++
gi|1127566 282 KEDLDDAFK 290
Xylose_isom: domain 1 of 1, from 324 to 347: score -0.1, E = 37
*->sIDaNqGdpllgwD.tDlfpGtdv<-*
s+D N+ dpl++wD+ D f+G+++
gi|1127566 324 SVDYNTSDPLIRWDsYDNFSGHRD 347
SAM_decarbox: domain 1 of 1, from 695 to 724: score 0.1, E = 39
*->sappsniekeseviedPdyTLEmlMtGLDkeka<-*
++p++ +++e ie+ ++TL mlM +L ++ a
gi|1127566 695 EFPRA--ASQQE-IEQSIETLNMLMLDLEPASA 724
Histidinol_dh: domain 1 of 1, from 867 to 884: score -1.0, E = 62
*->eaEGLtAHaeA.VrvRle<-*
+ EGL AH+ A+V +R++
gi|1127566 867 NLEGLVAHRVAgVQAREK 884
IGPS: domain 1 of 1, from 868 to 894: score -0.9, E = 94
*->ILekIvadkreeVaaakarppltladLqalldlrlapptr<-*
Le +va++ + V+a++++p +++ p r
gi|1127566 868 -LEGLVAHRVAGVQAREKQPA------------EPPAPLR 894
DUF23: domain 1 of 1, from 1000 to 1017: score -1.7, E = 47
*->fsslkssntvktGKsvVr<-*
+++ ++++++++GK+vVr
gi|1127566 1000 VTRRRIQPEEDEGKVVVR 1017
rhv: domain 1 of 1, from 1017 to 1058: score -1.4, E = 94
*->gppveatgrgsdrvfltTd.........pnS.sitAlqavetgavt<
++ e ++ +v+ t++ +++ ++++p S s++A+q ++g ++
gi|1127566 1017 RLSEEPRS-YVESVARTAVagpraqdsePKSfSAPATQ--AYG-HE 1058
-*
gi|1127566 - -
VMAT: domain 1 of 1, from 1086 to 1104: score -1.3, E = 50
*->tssPqgefpageddeeeqd<-*
+s + g+fp ge++++++
gi|1127566 1086 DSTSVGSFPSGESSDQGPR 1104
DHquinase_I: domain 1 of 1, from 1121 to 1131: score -0.6, E = 85
*->GQisvkelrei<-*
GQ+s+ +r++
gi|1127566 1121 GQPSPSAQRNY 1131
Cu_amine_oxid: domain 1 of 1, from 1201 to 1211: score -0.3, E = 22
*->nPsLdvpsska<-*
nPs+++pss++
gi|1127566 1201 NPSMAAPSSPS 1211
MIase: domain 1 of 1, from 1246 to 1253: score 1.6, E = 42
*->LcrHPSsv<-*
LcrHP v
gi|1127566 1246 LCRHPAGV 1253
SH2: domain 1 of 1, from 1463 to 1557: score 45.5, E = 1.6e-14
*->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgp.
Wy + IsR++A lL+ +++G+F++R+S s G Y L + +p+
gi|1127566 1463 WYKPEISREQAIALLKD--QEPGAFIIRDSHSFRGAYGLAMKVSSPp 1507
...............rVkHyrIqsldng.gyyitggvk.FssLpeLvehY
++ +++++++ +++ V+H+ I + ++g ++ +++ +F+sL+ Lv+ +
gi|1127566 1508 ptimqqnkkgdmtheLVRHFLIETGPRGvKLKGCPNEPnFGSLSALVYQH 1557
<-*
gi|1127566 - -
ER: domain 1 of 1, from 1550 to 1559: score 2.6, E = 16
*->LScLVYdkst<-*
LS+LVY++s+
gi|1127566 1550 LSALVYQHSI 1559
//
Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib
Sequence file: tem24
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Prosite
---------------------------------------------------------
| ppsearch (c) 1994 EMBL Data Library |
| based on MacPattern (c) 1990-1994 R. Fuchs |
---------------------------------------------------------
PROSITE pattern search started: Tue Dec 12 21:55:30 2000
Sequence file: tem24
----------------------------------------
Sequence gi|11275669|gb|AAG33700.1| (1735 residues):
Matching pattern PS00001 ASN_GLYCOSYLATION:
59: NLSE
132: NISA
328: NTSD
341: NFSG
383: NATR
408: NSTA
527: NTSE
1063: NGTL
1587: NSTA
Total matches: 9
Matching pattern PS00004 CAMP_PHOSPHO_SITE:
371: KKDS
1332: RRPT
1390: RRMS
Total matches: 3
Matching pattern PS00005 PKC_PHOSPHO_SITE:
19: TER
61: SER
161: SQR
176: SIK
412: STK
415: TDK
476: SGR
494: SER
638: SSR
752: SSR
849: SPK
912: SPR
948: SYK
1001: TRR
1459: TSK
1492: SFR
Total matches: 16
Matching pattern PS00006 CK2_PHOSPHO_SITE:
6: TMED
30: TANE
413: TKTD
433: SPQE
494: SERE
520: SSLD
583: SAQE
621: SFSE
623: SEAE
638: SSRE
692: SLPE
701: SQQE
794: SPYD
849: SPKE
860: TPEE
948: SYKE
1024: SYVE
1145: SSPD
1156: SSPE
1327: STPE
1328: TPED
1393: SVGD
1433: TLPD
1441: SMPD
1588: STAD
1647: TLTD
1667: TFCD
1699: STTD
Total matches: 28
Matching pattern PS00007 TYR_PHOSPHO_SITE:
1017: RLSEEPRSY
1454: KFVQDTSKY
Total matches: 2
Matching pattern PS00008 MYRISTYL:
121: GVVIAA
171: GLLSGS
277: GVVFGK
363: GSLYAK
377: GSTGAV
380: GAVNAT
407: GNSTAS
424: GASSAT
489: GGALAS
490: GALASE
514: GSMGTL
517: GTLSSL
524: GVTNTS
543: GLDKSY
615: GMFRSQ
736: GAWPGA
901: GQYENQ
958: GTSPSS
1064: GTLGGS
1091: GSFPSG
1141: GSSYSS
1176: GSPQAR
1227: GSTVSS
1277: GAHQGN
1281: GNLASG
1286: GLHSNA
1305: GGSGSV
1399: GSLPNY
1425: GSTVSF
1548: GSLSAL
1596: GAACNV
1645: GITLTD
1683: GGAPAK
Total matches: 33
Matching pattern PS00009 AMIDATION:
1195: FGRR
Total matches: 1
Matching pattern PS00138 SUBTILASE_SER:
958: GTSPSSPPPSG
Total matches: 1
Total no of hits in this sequence: 93
========================================
1314 pattern(s) searched in 1 sequence(s), 1735 residues.
Total no of hits in all sequences: 93.
Search time: 00:00 min
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Profile Search
L=0 16.2029 1066 pos. 1463 - 1572 PS50001|SH2 Src homology 2 (SH2) domain profile.
#
# P 1 WYHGKISREEAERLLRNKGBEGTFLVRESESSPGDYTLSVRXDG---------------- -49
# S 1463 WYKPEISREQAIALLKDQ-EPGAFIIRDSHSFRGAYGLAMKVSSppptimqqnkkgdmth -215
#
# P 44 -QVKHYRIQKTDNG-KYYISER-XRFNSLPELIEHYQQNSXGLCXRLRYPV -1
# S 1522 eLVRHFLIETGPRGvKLKGCPNePNFGSLSALVYQHSIIPLALPCKLVIPN -164
#
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with motif search against own library
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
argv[1]=P
argv[2]=-m /data/patterns/own/motif.fa
argv[4]=-seq tem24
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
SeqTyp=2 : PROTEIN search;
>APC D-Box is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 1735 units
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~
Start with HMM-search search against own library
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm.lib
Sequence file: tem24
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm-f.lib
Sequence file: tem24
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
kreil-Nterm 1.0 44 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
kreil-Nterm 1/1 1649 1662 .. 172 191 .] 1.0 44
Alignments of top-scoring domains:
kreil-Nterm: domain 1 of 1, from 1649 to 1662: score 1.0, E = 44
*->fanqdtdytPLPIfFRhyri<-*
+ nq+ + +fFR+++
gi|1127566 1649 TDNQR-K-----LFFRRHYP 1662
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
L. Aravind's signalling DB
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
(1735 letters)
Searching..................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
PTB Phospho-Tyrosine Binding domain 83 3e-18
SH2 Src Homology domain 2 62 4e-12
INSL Insulinase like Metallo protease domain 30 0.019
WHTH Winged HTH domain 23 2.4
FHA Forkhead Associated domain (Phosphoserine/threonine bind... 23 2.9
POZ Pox virus Zinc finger domain (Also called BTB domain; a... 23 4.1
JAB JAB1 associated domain involved in proteolysis 23 4.6
CBS cystathionine beta -synthase domain (A predicted ligand... 22 4.9
CALC Calcineurin like Phosphoesterase domain 22 6.5
SGTP Small GTPAses 22 7.2
ACTIN Actin ATPase/ Cytoskeletal ATPase domain 22 8.7
S1 S1 RNA binding domain 21 9.3
>PTB Phospho-Tyrosine Binding domain
Length = 138
Score = 82.9 bits (203), Expect = 3e-18
Identities = 23/145 (15%), Positives = 23/145 (15%), Gaps = 26/145 (17%)
Query: 1600 NVLFINSVDMESLTGPQ----AISKATSETLAADPTPA-----ATIVHFKVSAQGITLTD 1650
Sbjct: 8 VARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETAKLQKVEIRISIDNVIIAD 67
Query: 1651 -NQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGAPAKLFGFVARKQGSTTDNACHLFA 1709
Sbjct: 68 IKTKAPMY--TFPLGRISFCADDKDDK-----------RMFSFIARAEGASGKPSCYAF- 113
Query: 1710 ELDPNQPASAIVNFVSKVMLNAGQK 1734
Sbjct: 114 --TSEKLAEDITLTIGEAFDLAYKR 136
>SH2 Src Homology domain 2
Length = 119
Score = 62.3 bits (150), Expect = 4e-12
Identities = 22/115 (19%), Positives = 22/115 (19%), Gaps = 16/115 (13%)
Query: 1463 WYKPEISREQAIALLKD--QEPGAFIIRDSHSFRGAYGLAMKVSSPPPTIMQQNKKGDMT 1520
Sbjct: 7 WFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSFSLSVRD------------YDPMH 54
Query: 1521 HELVRHFLIETGPRGVKLKGCPNEPNFGSLSALVYQHSIIPLALPCKLVIPNRDP 1575
Sbjct: 55 GDVIKHYKIRSLDNGGYY--ISPRITFPCISDMIKHYQKQSDGLCRRLEKACISP 107
>INSL Insulinase like Metallo protease domain
Length = 433
Score = 30.4 bits (68), Expect = 0.019
Identities = 26/183 (14%), Positives = 26/183 (14%), Gaps = 34/183 (18%)
Query: 248 LKCYHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDLDDAFK-----DDRFPEYGKVEF 302
Sbjct: 190 LLKFYKSFYQPRNMAV--------------VIVGKVNPKEVEEEVMKTFGKEEGRPVPKV 235
Query: 303 VFSYGPEKIQGMEHLENGPSVSVDYNT-SDPLIRWDSYDNFSGHRDDGMEEVVGHTQGPL 361
Sbjct: 236 QIPTEPEQIGIRFKKLKDPRIEKAYWIIGWRVPAIGKTDYKGL---LVFSEILCGGRI-- 290
Query: 362 DGSLYAKVKKKDSLHGSTGAVNATRP-------TLSATPNHVEHTLSVSSDSGNSTASTK 414
Sbjct: 291 -SVFYRELREKG-LVYSYSCGDMGRPRDNIFIITATFPPENYEKVKKRVFELLKETYENL 348
Query: 415 TDK 417
Sbjct: 349 TDE 351
> WHTH Winged HTH domain
Length = 74
Score = 23.3 bits (50), Expect = 2.4
Identities = 11/60 (18%), Positives = 11/60 (18%), Gaps = 12/60 (20%)
Query: 980 LSALGLKPHNPADIL----LHPTGVTRR--------RIQPEEDEGKVVVRLSEEPRSYVE 1027
Sbjct: 13 LSKLIERPYTASEIAKLTGYSKTTVSYHLSKLNEAGLVERLERGKWVYYRITPKGERRVK 72
>FHA Forkhead Associated domain (Phosphoserine/threonine binding domain)
Length = 89
Score = 23.3 bits (50), Expect = 2.9
Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 1466 PEISREQAIALLKDQEPGAFIIRDSHSFRGAY 1497
Sbjct: 44 NCISRNHAI--LQATEEDTFLLIDLGSRNGTF 73
>POZ Pox virus Zinc finger domain (Also called BTB domain; a protein-protein interaction domain)
Length = 229
Score = 22.8 bits (48), Expect = 4.1
Identities = 6/55 (10%), Positives = 6/55 (10%), Gaps = 3/55 (5%)
Query: 1426 STVSFS-HTLPDFSKYSMPDNSPETRAKVKFVQDTSKY-WYKPEISREQAIALLK 1478
Sbjct: 174 NSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQG-RKLAEVCCTS 227
>JAB JAB1 associated domain involved in proteolysis
Length = 136
Score = 22.5 bits (48), Expect = 4.6
Identities = 8/34 (23%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 332 PLIRWDSYDNFSGH-RDDGMEEVVGHTQGPLDGS 364
Sbjct: 6 PLVLLSVVDHFNRIVKVGNQKRVVGVLLGSWQKK 39
>CBS cystathionine beta -synthase domain (A predicted ligand binding domain)
Length = 214
Score = 22.3 bits (47), Expect = 4.9
Identities = 19/153 (12%), Positives = 19/153 (12%), Gaps = 32/153 (20%)
Query: 239 GLLLKGDILLKCYHKKFRSPARDVIFRVQ-----------------FHTCAIHDLGVV-- 279
Sbjct: 46 GWVTTLEL-LGISEKDFKKPITEFMRPVEEVITVYEDDEARNVVLKFVKYKVVSIPVLTR 104
Query: 280 FGK-------EDLDDAFKDDRFPEYGKVEFVFSYGPEKIQGMEHLENGPSVSVDYNTSDP 332
Sbjct: 105 DGRVIGMVRNCDVVKTLAKLYEIPVYKIFKELHNHIGDISWEELMEA--AAVVTKRMTGE 162
Query: 333 LIRWDSYDNFSGH--RDDGMEEVVGHTQGPLDG 363
Sbjct: 163 DITPQEYEERIKKTTFGKAIWACGGL-EKFFVG 194
>CALC Calcineurin like Phosphoesterase domain
Length = 274
Score = 22.1 bits (46), Expect = 6.5
Identities = 25/215 (11%), Positives = 25/215 (11%), Gaps = 27/215 (12%)
Query: 135 ASADQALDRFAMKRFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGI 194
Sbjct: 39 ASFAQVLKEIQQENNEFDVILATGDLVQDSSDEGYIRFVEMMKPFNK-----PVFWIPGN 93
Query: 195 PNFESKGGCRPFLRIYQAMQPVYTSGIYN-IPGDSQTSVCITIEPGLLLKGDI--LLKCY 251
Sbjct: 94 HDFQPKMAEFLN---QPPMNAAKHLLLGEHWQALLLDSQVYGVPHGQLSQHQLDLLKETL 150
Query: 252 HKKFRSPARDVIFR--VQFHTCAIHDLGVVFGKEDLDDAFKDDRFPEYGKVEFVFSYGPE 309
Sbjct: 151 GKNPERYTLVVLHHHLLPTNSAWLDQHNLRNSHELAEVLAP------FTNVKAILY---- 200
Query: 310 KIQGMEHLENGPSVSVDYNTSDPLIRWDSYDNFSG 344
Sbjct: 201 ---GHIHQEVNSEWNGYQVMATPA-TCIQFKPDCQ 231
>SGTP Small GTPAses
Length = 164
Score = 22.0 bits (47), Expect = 7.2
Identities = 15/59 (25%), Positives = 15/59 (25%), Gaps = 11/59 (18%)
Query: 141 LDRFAMKRFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNFES 199
Sbjct: 17 LHQFIEKKFKDDSNHTIG-------VEF----GSKIINVGGKYVKLQIWDTAGQERFRS 64
>ACTIN Actin ATPase/ Cytoskeletal ATPase domain
Length = 376
Score = 21.7 bits (46), Expect = 8.7
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 1648 LTDNQRKLFFRRHYPLNT 1665
Sbjct: 186 LTDHLMKILTERGYMFTT 203
>S1 S1 RNA binding domain
Length = 305
Score = 21.4 bits (45), Expect = 9.3
Identities = 1/24 (4%), Positives = 1/24 (4%)
Query: 999 GVTRRRIQPEEDEGKVVVRLSEEP 1022
Sbjct: 3 SSSNSAAFSLDEFAKALDKHDYHA 26
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 105
Number of sequences better than 10.0: 12
Number of calls to ALIGN: 12
Length of query: 1735
Total length of test sequences: 20182
Effective length of test sequences: 16037.0
Effective search space size: 27183763.2
Initial X dropoff for ALIGN: 25.0 bits
Y. Wolf's SCOP PSSM
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= gi|11275669|gb|AAG33700.1| tensin [Homo sapiens]
(1735 letters)
Searching.................................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
gi|1633321 [7..184] (Phosphotyrosine) protein phosphatases II 58 1e-09
gi|1519054 [340..536] (Phosphotyrosine) protein phosphatases... 39 6e-04
gi|1469051 [197..455] (Phosphotyrosine) protein phosphatases... 36 0.006
gi|1469069 [141..404] (Phosphotyrosine) protein phosphatases... 34 0.022
gi|1546735 [56..315] (Phosphotyrosine) protein phosphatases ... 32 0.12
gi|2088870 [834..1045] (Phosphotyrosine) protein phosphatase... 30 0.42
gi|1079313 [232..541] (Phosphotyrosine) protein phosphatases... 30 0.43
gi|2814284 [1..224] P-loop containing nucleotide triphosphat... 28 1.4
gi|1130652 [108..360] (Phosphotyrosine) protein phosphatases... 28 1.4
gi|119653 [27..153] OB-fold 27 1.9
gi|809147 [23..305] (Phosphotyrosine) protein phosphatases II 27 2.6
gi|136297 [237..503] beta/alpha (TIM)-barrel 27 2.8
gi|1237126 [3..374] Ribonuclease H-like motif 26 4.0
gi|1827606 [1..273] Flavodoxin-like 26 4.8
gi|2120533 [2..254] NAD(P)-binding Rossmann-fold domains 26 5.2
gi|586847 [59..303] Periplasmic binding protein-like I 26 5.7
gi|1504014 [3..727] P-loop containing nucleotide triphosphat... 26 6.0
gi|1197643 [1..285] NAD(P)-binding Rossmann-fold domains 26 6.1
gi|1684733 [3..247] NAD(P)-binding Rossmann-fold domains 26 6.4
gi|625921 [2..242] NAD(P)-binding Rossmann-fold domains 25 6.7
gi|2688351 [1..345] NAD(P)-binding Rossmann-fold domains 25 7.1
gi|2039378 [21..454] PLP-dependent transferases 25 8.7
gi|2131476 [80..370] Zn-dependent exopeptidases 25 8.8
>gi|1633321 [7..184] (Phosphotyrosine) protein phosphatases II
Length = 178
Score = 57.8 bits (138), Expect = 1e-09
Identities = 19/126 (15%), Positives = 19/126 (15%), Gaps = 16/126 (12%)
Query: 53 GNYLLFNLSERRPDITKLHAKVLEF-------GWPDLHTP---ALEKICSICKAMDTWLN 102
Sbjct: 48 GITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALA 107
Query: 103 ADPHNVVVLHNKGNRGRIGVVIAAY-MHYSNISASADQALDRFAMKRFYEDKIVPIGQPS 161
Sbjct: 108 QKNGRVLV-HCREGYSRSPTLVIAYLMMRQKM--DVKSALSIVRQNREIGPNDGFLAQ-- 162
Query: 162 QRRYVH 167
Sbjct: 163 LCQLND 168
>gi|1519054 [340..536] (Phosphotyrosine) protein phosphatases II
Length = 197
Score = 39.0 bits (90), Expect = 6e-04
Identities = 14/79 (17%), Positives = 14/79 (17%), Gaps = 8/79 (10%)
Query: 78 GWPDLHTP--------ALEKICSICKAMDTWLNADPHNVVVLHNKGNRGRIGVVIAAYMH 129
Sbjct: 99 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVL 158
Query: 130 YSNISASADQALDRFAMKR 148
Sbjct: 159 KDNPHSNLEQVRADFRDSR 177
>gi|1469051 [197..455] (Phosphotyrosine) protein phosphatases II
Length = 259
Score = 35.6 bits (81), Expect = 0.006
Identities = 17/132 (12%), Positives = 17/132 (12%), Gaps = 20/132 (15%)
Query: 48 KSKHGGNYLLFNLSERRPDITKLHAKVLEF-GWPDLHTPA------LEKICSICKAMDTW 100
Sbjct: 131 KRVEIMDGWVLKVVSVSNGDYKSFLHIHHYNAWPHNNIPGNGSPKFVKQIWQLQSVLR-- 188
Query: 101 LNADPHNVVVLHNKGNRGRIGVVIAAY-MHYSNISASADQALDRFAMKRFYEDKIVP--- 156
Sbjct: 189 -KYSPSTPTVYMSLSGCGRAGTFALFETAHLSLHSEQ-----ATLDLVKCLEMVRNGRIH 242
Query: 157 -IGQPSQRRYVH 167
Sbjct: 243 ACQNLTQFSFVY 254
>gi|1469069 [141..404] (Phosphotyrosine) protein phosphatases II
Length = 264
Score = 34.0 bits (77), Expect = 0.022
Identities = 18/139 (12%), Positives = 18/139 (12%), Gaps = 13/139 (9%)
Query: 35 NFRSNLREVAQMLKSKHGGNYL-LFNLSERRPDITKLHAKVLEFGWPDLHTPA-LEKICS 92
Sbjct: 122 TIRVNNRKTVPKTEEQANTQLYYEVVPKDCAEAPFAMIEICD--FWPDAKIPTMGYNRIA 179
Query: 93 ICKAMDTWLNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISA----SADQALDRFAMKR 148
Sbjct: 180 ATAASVFESDIDCDASCAIVSNYGAGRAGSFFVAVLAIEKLQAGEAPNIKEIALSVRSQR 239
Query: 149 FYEDKIVPIGQPSQRRYVH 167
Sbjct: 240 PA-----AIETLSQYMFTY 253
>gi|1546735 [56..315] (Phosphotyrosine) protein phosphatases II
Length = 260
Score = 31.6 bits (71), Expect = 0.12
Identities = 16/104 (15%), Positives = 16/104 (15%), Gaps = 4/104 (3%)
Query: 65 PDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPHNVVVLHNKGNRGRIGVVI 124
Sbjct: 155 EDFMAFYNTMKEVGVPLL---AVMKNNCMSSFFKKYHHTPPTNAPIIQCSTGGARCGVFI 211
Query: 125 AAYMHYSNISASADQALDRF-AMKRFYEDKIVPIGQPSQRRYVH 167
Sbjct: 212 IIDILINLIDNRIKNSYSIEWWMLKVRSKRNHSALTNQQHSFIY 255
>gi|2088870 [834..1045] (Phosphotyrosine) protein phosphatases II
Length = 212
Score = 29.6 bits (66), Expect = 0.42
Identities = 14/150 (9%), Positives = 14/150 (9%), Gaps = 21/150 (14%)
Query: 27 FPSTANEENFRSNLREVAQMLKSKHGGNYLLFNLSERRPDITKLHAKVLEF-GWPDLHTP 85
Sbjct: 72 YPESVGESMKFKNLT--VECKSKIAEKDFETRELEVKFDGHEPHTVTHSRLVGWNPLNVQ 129
Query: 86 ALEKICSICKAMDTWLNADPHNV--VVLHNKGNRGRIGVVIAAY-MHYSNISASADQALD 142
Sbjct: 130 ------PDTLLFTSLIQKIKNSTTPVMVHCIDGISRSAAFASMIIGYQLVIQSL-----G 178
Query: 143 RFAMKRFYEDKIVP----IGQPSQRRYVHY 168
Sbjct: 179 SVKLEAVVSYIRSQRAMAITSALELAFVDA 208
>gi|1079313 [232..541] (Phosphotyrosine) protein phosphatases II
Length = 310
Score = 29.7 bits (66), Expect = 0.43
Identities = 13/77 (16%), Positives = 13/77 (16%), Gaps = 4/77 (5%)
Query: 54 NYLLFNLSERRPDITKLHAKVLEFGWPDLHTPA-LEKICSICKAMDTWLNADPHNV-VVL 111
Sbjct: 169 ELKLSKVGQGNTERAVWQYHFKT--WPDHGVPADPGGVLDFLEEVHHKQDGITDAGPVVV 226
Query: 112 HNKGNRGRIGVVIAAYM 128
Sbjct: 227 HCSAGIGRTGTFIVIDI 243
>gi|2814284 [1..224] P-loop containing nucleotide triphosphate hydrolases
Length = 224
Score = 28.0 bits (61), Expect = 1.4
Identities = 14/158 (8%), Positives = 14/158 (8%), Gaps = 16/158 (10%)
Query: 141 LDRFAMKRFYEDKIVPIGQPSQRRYVHYFSG---------LLSGSIKINNKPLFLHH--- 188
Sbjct: 68 NHEKLNSFFKKRQLLSVNVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDV 127
Query: 189 -VIMHGIPNFESKGGCRPFLRIYQAMQPVYTSGIYNIPGDSQTSVCITIEPGLLLKGDIL 247
Sbjct: 128 FLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPV 187
Query: 248 LKCYHKKFRSPARDVIFRVQFHTCAIHDLGVVFGKEDL 285
Sbjct: 188 SHTQGYVMAKEIKAVKY---LECSALTQIGLKQVFDEA 222
>gi|1130652 [108..360] (Phosphotyrosine) protein phosphatases II
Length = 253
Score = 27.7 bits (61), Expect = 1.4
Identities = 12/94 (12%), Positives = 12/94 (12%), Gaps = 13/94 (13%)
Query: 78 GWPDLHTPALEKICSICKAMDTWLNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASA 137
Sbjct: 145 NWKQKQGL--ENVGELVTTVE-KVLKTNENTVL-MSMNGIGRAGTMLTLFTSMLSVQKS- 199
Query: 138 DQALDRFAMKRFYEDKIVP----IGQPSQRRYVH 167
Sbjct: 200 ----KEVNPKEILIKLRGERSGLVENADQFNTVH 229
>gi|119653 [27..153] OB-fold
Length = 127
Score = 27.3 bits (60), Expect = 1.9
Identities = 13/53 (24%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 259 ARDVIFRVQFHTCAIHD-LGVVFGKEDLDDAFKDDRFPEYGKVEFVFSYGPEK 310
Sbjct: 47 YFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKK 99
>gi|809147 [23..305] (Phosphotyrosine) protein phosphatases II
Length = 283
Score = 27.0 bits (59), Expect = 2.6
Identities = 18/116 (15%), Positives = 18/116 (15%), Gaps = 22/116 (18%)
Query: 78 GWPDLHTPALEKICSICKAMD---------------TWLNADPHNVVVLHNKGNRGRIGV 122
Sbjct: 168 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQ 227
Query: 123 VIAAYMHYSNISASADQALDRFAMKRFYEDKIVPIGQPSQRRYVH-----YFSGLL 173
Sbjct: 228 LIGAMCMNDSRNSQLS-VEDMVSQMRVQRNGIM-VQKDEQLDVLIKLAEGQGRPLL 281
>gi|136297 [237..503] beta/alpha (TIM)-barrel
Length = 267
Score = 26.7 bits (58), Expect = 2.8
Identities = 8/35 (22%), Positives = 8/35 (22%)
Query: 868 LEGLVAHRVAGVQAREKQPAEPPAPLRRRAASDGQ 902
Sbjct: 3 LEKICAQRQKDVDQAKATPGTTPEDLKTLLSMKLS 37
>gi|1237126 [3..374] Ribonuclease H-like motif
Length = 372
Score = 26.5 bits (58), Expect = 4.0
Identities = 12/108 (11%), Positives = 12/108 (11%), Gaps = 21/108 (19%)
Query: 178 KINNKPLFLHHVIMHGIPNFE------SKGGCRPFLRIYQAMQPV-YTSGIYN--IPGDS 228
Sbjct: 44 ATKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEIKYDH 103
Query: 229 QTSVCITIEPGLLLKGDILLKCY-HKKFRSPARDVIFRVQFHTCAIHD 275
Sbjct: 104 TKIRVANF--------DI--EVTSPDGFPEPSQAKHPIDAI-THYDSI 140
>gi|1827606 [1..273] Flavodoxin-like
Length = 273
Score = 26.1 bits (57), Expect = 4.8
Identities = 13/83 (15%), Positives = 13/83 (15%), Gaps = 6/83 (7%)
Query: 121 GVVIAAYMHYSNISASADQALDRFAMKRF-YEDKIVPIGQPSQRRYVHYF---SGLLSG- 175
Sbjct: 96 LVIFQFPLYWFGVPAILKGWFERVLVAGFAYTYATMYDKGPFQNKKTLLSITTGGSGSMY 155
Query: 176 -SIKINNKPLFLHHVIMHGIPNF 197
Sbjct: 156 SLQGVHGDMNVILWPIQSGILRF 178
>gi|2120533 [2..254] NAD(P)-binding Rossmann-fold domains
Length = 253
Score = 25.8 bits (55), Expect = 5.2
Identities = 25/244 (10%), Positives = 25/244 (10%), Gaps = 17/244 (6%)
Query: 41 REVAQMLKSKHGGNYLLFNLSERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTW 100
Sbjct: 17 KALCKKI-LQNKGIAILADINENHLSILKTELENEFKKELLSLRLDITSKESLNCAIDQA 75
Query: 101 LNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASADQALDRFAMKRFYEDKIVPIGQP 160
Sbjct: 76 FEKYSKIDGFVNSSYPVGKDW-GKIAYYEASYEQICESLNLHLGGFILASQ-EFVKFFKK 133
Query: 161 SQRRYVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNFESKGGCRPFLRIYQAMQPVYTSG 220
Sbjct: 134 QSYGNIINLSS--IMGVFAPKFENYENTTMQSSLEYSVIKAGINHLGAWLAKE------- 184
Query: 221 IYNIPGDSQTSVCITIEPGLLLKG--DILLKCYHKKFRSPARDVIFRVQFHTCAIHDLGV 278
Sbjct: 185 -LFNTNIRVNTLASGGILDNQANIFLEKYRKCCASKGMLDAEDICGTLVF--LLSDESKF 241
Query: 279 VFGK 282
Sbjct: 242 VTGQ 245
>gi|586847 [59..303] Periplasmic binding protein-like I
Length = 245
Score = 25.7 bits (56), Expect = 5.7
Identities = 9/80 (11%), Positives = 9/80 (11%), Gaps = 14/80 (17%)
Query: 223 NIPGDSQTSVCITIEPGLLLKGDILLKCYHKKF---------RSPARDVIFRVQFHTCAI 273
Sbjct: 87 DTGDIDVPCAFNDRKTAYAESFRYLKSRGHENIAFTCVREADRSPST--ADKAAAYKAVC 144
Query: 274 HDLG---VVFGKEDLDDAFK 290
Sbjct: 145 GRLEDRHMLSGCNDMNDGEL 164
>gi|1504014 [3..727] P-loop containing nucleotide triphosphate hydrolases
Length = 725
Score = 25.7 bits (56), Expect = 6.0
Identities = 6/38 (15%), Positives = 6/38 (15%), Gaps = 3/38 (7%)
Query: 1510 IMQQNKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNF 1547
Sbjct: 101 SLDFDQAGQVASASIQTMLLE-KLRVARR--PASEATF 135
>gi|1197643 [1..285] NAD(P)-binding Rossmann-fold domains
Length = 285
Score = 25.7 bits (55), Expect = 6.1
Identities = 6/52 (11%), Positives = 6/52 (11%)
Query: 973 PGLAKTPLSALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSEEPRS 1024
Sbjct: 165 PNDTRKKLIPLLDRLAETKESLDMSEGNQEIELVHINDICSAYKTAILKLQD 216
>gi|1684733 [3..247] NAD(P)-binding Rossmann-fold domains
Length = 245
Score = 25.8 bits (55), Expect = 6.4
Identities = 7/56 (12%), Positives = 7/56 (12%), Gaps = 2/56 (3%)
Query: 973 PGLAKTPL--SALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSEEPRSYV 1026
Sbjct: 176 PGPTATAIWGSLGLNDEQLEAVADSVTKRLLPGHFLESAAVANVILFQLSQGARGV 231
>gi|625921 [2..242] NAD(P)-binding Rossmann-fold domains
Length = 241
Score = 25.5 bits (54), Expect = 6.7
Identities = 8/55 (14%), Positives = 8/55 (14%), Gaps = 1/55 (1%)
Query: 973 PGLAKTPL-SALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSEEPRSYV 1026
Sbjct: 176 PNFFNNPTYFPTSDWENNPELRERVERDVPLGRLGRPDEMGALITFLASRRAAPI 230
>gi|2688351 [1..345] NAD(P)-binding Rossmann-fold domains
Length = 345
Score = 25.5 bits (54), Expect = 7.1
Identities = 10/58 (17%), Positives = 10/58 (17%)
Query: 966 PSGVRSPPGLAKTPLSALGLKPHNPADILLHPTGVTRRRIQPEEDEGKVVVRLSEEPR 1023
Sbjct: 196 FFTVYGTYGRPDMALYLFSDGIKNGKAINIFNNGNMARDFTYVGDIADGVYKVLKNPA 253
>gi|2039378 [21..454] PLP-dependent transferases
Length = 434
Score = 25.2 bits (54), Expect = 8.7
Identities = 14/153 (9%), Positives = 14/153 (9%), Gaps = 12/153 (7%)
Query: 53 GNYLLFNLSERRPDITKLHAKVLEFGWPDLHTPALEKICSICKAMDTWLNADPHNVVVLH 112
Sbjct: 26 GGIVTVSVGHCHPKINAALTEQAQKLWHTTSIYHTEPIYEYAEKL----LSKFPSKLNVS 81
Query: 113 NKGNRGRIGVVIAA--------YMHYSNISASADQALDRFAMKRFYEDKIVPIGQPSQRR 164
Sbjct: 82 FYFLPFYQTLQFADLKLLGLPISVFFVNSGSEANDLALALARNYTGRFDVISMRNGYHGM 141
Query: 165 YVHYFSGLLSGSIKINNKPLFLHHVIMHGIPNF 197
Sbjct: 142 TQTVLGATNLGNWKPVFPHGFNIFKSLNADPYR 174
>gi|2131476 [80..370] Zn-dependent exopeptidases
Length = 291
Score = 25.4 bits (55), Expect = 8.8
Identities = 7/63 (11%), Positives = 7/63 (11%), Gaps = 2/63 (3%)
Query: 76 EFGWPDLHTPALEKICSICKAMDTWLNADPHN-VVVLHNKGNRGRIGVVIAAYMHYSNIS 134
Sbjct: 156 EGGLLGSLDVF-TAYAKQKKHVRAMLQQDMTGYVSDPEDEHVGIVTDYTTPALTDFIKLI 214
Query: 135 ASA 137
Sbjct: 215 INS 217
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 1187
Number of sequences better than 10.0: 23
Number of calls to ALIGN: 23
Length of query: 1735
Total length of test sequences: 256703
Effective length of test sequences: 201489.0
Effective search space size: 340202294.5
Initial X dropoff for ALIGN: 25.0 bits