analysis of sequence from tem12
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
>tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLA
VGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGD
GVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSLHDIV
GNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIR
VGVVQFSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL
VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIV
GVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYA
DTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGK
SLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSSLVFIPAEFRAAPLQGMLPGLLAPLRTLSGT
PEVHSNKRDIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS
DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAG
ILTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILF
LFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEILNLVKRMKIKT
GKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADP
AELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF
VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNIL
VSSAGSRITEGVPQLLIVLTADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPT
FRQLGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVD
YLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGS
RIEEGVPQFLVLISSGKSDDEVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL
EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGP
SKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGV
PQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIM
NSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL
VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI
TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAM
HETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVV
ANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLA
DLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACC
GVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP
GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPK
GETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG
LIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDGVGSEGRRGKK
GERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDSIDQCALI
QSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY
NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPT
RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDI
CNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQH
FARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESA
PNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK
STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNP
VTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPAT
AAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEITENSAKLHWER
PEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRATYHGSFSTKKSQP
PPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK
FGSQKECEKVCAPVLAKPGVISVMGT
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
sec.str. with predator
Info> Identical 7-residue fragments found in:
Info> 1knt.brk -
> tem12gi|3127926|emb|CAA36267.1|
. . . . .
1 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTI 50
__________EEEE_________HHHHHHHHH_______EEEEE____EE
. . . . .
51 GEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQ 100
EHHHHHHHHHHHHHHHHHH_______EEEEEE__________HHHHHHHH
. . . . .
101 EVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLT 150
HHHHH_______________EEEEEEHHHHHHHHH________EEEEEEE
. . . . .
151 DGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNL 200
___________HHHHHH___EEEE_________HHHHHH_____EEEEEE
. . . . .
201 ENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGS 250
__EEE_EEEEEEEEEEEE___________HHHHHHH_____EEEEEEE__
. . . . .
251 NNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS 300
____EEEEEEHHHHHHHHHHH______EEEEEEEE______EEEE_____
. . . . .
301 TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL 350
HHHHHHHHHHH____________HHHHHH__________________EEE
. . . . .
351 VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF 400
EEEE_________HHHHHHHEEEEEE____HHHHHHHHHHHHH____EEE
. . . . .
401 TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLV 450
EE_______HHHHH____EEEEE_EEEEE____EEEEEEE____EEEEEE
. . . . .
451 DGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFN 500
__________HHHHHHHHHHHHHHHHHH_HHHHHHHHHHHHH____EEE_
. . . . .
501 THPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIP 550
_____HHHHHHHHH_______EEE____HHHHHH________________
. . . . .
551 KLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS 600
_EEEEE____________HHHHHHHHHEEEE_______HHHHHHHHHH_E
. . . . .
601 LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANV 650
EEEEE__EEEE________EEEEEEEE___________EEEEEE______
. . . . .
651 GKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS 700
________HHHHHHHHH________EEEEEEEE_________________
. . . . .
701 DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLL 750
__HHHHHHHHHH__________EEEEEE_________EEE__HHHHHHHH
. . . . .
751 TAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD 800
H______HHHHHHHHHHHHH_EEEE____HHHHHHHHHHH____EEEEE_
. . . . .
801 DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVG 850
_________EEEEE_EEEEE____EEEE________EEEEEE______EE
. . . . .
851 QFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL 900
E___HHHHHHHHHHH_________EEEEE__________________HHH
. . . . .
901 NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG 950
HHHHHHHHH_____HHHHHHHHHHHHEEEE________HHHHHHHHHHH_
. . . . .
951 RSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLP 1000
__________________EEEE_________HHHHHH___HHHHHHH___
. . . . .
1001 KIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF 1050
______HHHHHHHHHH___________EEEEEEE_________HHHHHHH
. . . . .
1051 VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTL 1100
HHHHHHH_______EEEEEEEEE______EEE______HHHHHHHHHHHH
. . . . .
1101 LGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRN 1150
________HHHHHHHHHHHH______________EEEEEE__________
. . . . .
1151 PSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV 1200
__EEEE____EEEEEE_____HHHHHHH_____EEEEE______HHHHHH
. . . . .
1201 ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQY 1250
HHHHHHHHHHHHHHHHH______________EEEEEEE_________HHH
. . . . .
1251 VRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQ 1300
HHHHHHHHHHEEE_____EEEEEEEE_____HHHHH_____HHHHHHHHH
. . . . .
1301 RLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD 1350
HHH_____EEE_______HHHHHH_____________EEEEEE_______
. . . . .
1351 EVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL 1400
EEEEEEEEEEE_____EEEE____HHHHHHHH_____EEEEE____HHHH
. . . . .
1401 EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPD 1450
HHHH_______HHHHHHHHHHH______________EEEEE_________
. . . . .
1451 GFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL 1500
___HHHHHHHHHHEEE______EEEEEE________EEEEEE____HHHH
. . . . .
1501 DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG 1550
HHHHHHHHH_________EEEEHHHHHHH_____________EEEEEE__
. . . . .
1551 KSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR 1600
_____HHHHHHHHH____EEE___________EEE_______HHHHHHHH
. . . . .
1601 ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINF 1650
____HHHHHHH___________________________EEEEEE______
. . . . .
1651 RRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKR 1700
____HHHHHHHHHHHHHH_______EEEEEEEEE_____EEEE____HHH
. . . . .
1701 QIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI 1750
HHHHHHHHEEE_______EEEEEEEEEEEE_______________EEEEE
. . . . .
1751 TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG 1800
E____HHHHHHHHHHHHH____EEEEEEE______EEEEE___HHHHH__
. . . . .
1801 NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQN 1850
___HHHHHHHHHHHHHHHHHHHH_______HHHHHHEEEEE_________
. . . . .
1851 VFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEA 1900
EEEE___HHHHHHHHHHHHHHHH___________EEEEEE________EE
. . . . .
1901 FDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIH 1950
EEE_____HHHHHHHHH___________HHHHHHHHHH______EEEEEE
. . . . .
1951 FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF 2000
E_______HHHHHHHH________HHHHHHHHHHHHHHHHHHHHHH____
. . . . .
2001 MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIG 2050
______HHHHHHHHHHHHH__HHHHHHH______________________
. . . . .
2051 PKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP 2100
__________________________________________________
. . . . .
2101 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 2150
______EEE_________________________________________
. . . . .
2151 VGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGF 2200
EEE_______________________________________________
. . . . .
2201 GRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP 2250
__________________________________________________
. . . . .
2251 RGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDG 2300
__________________________________________________
. . . . .
2301 VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPG 2350
__________________________________________________
. . . . .
2351 IVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP 2400
EEEE_____________________HHHHHHHHHH_______________
. . . . .
2401 TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY 2450
HHHHHHHH______________EEEEEEEEEEEEE_______EEEEEEEE
. . . . .
2451 NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFK 2500
___HHHHHHHHHH_HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH_____
. . . . .
2501 RVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQ 2550
______HHHHHHHH__________HHHHHHHHHH_____EEEHHHHHHHH
. . . . .
2551 LINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFG 2600
HHHHHHH_____EEEEEE_____HHHHHHHHH_EEEEEEEE_________
. . . . .
2601 SWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLD 2650
________________HHHHHHHHHH__EEEEEE__HHHHHHHHHHHHH_
. . . . .
2651 MSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD 2700
______HHHHHHEEEEEE_______________EEEEEEE_____EEEEH
. . . . .
2701 FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQ 2750
HHHHHHHHHH___HHHHHHHHHHHHHHH______HHHHHHHHH______H
. . . . .
2751 QLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK 2800
HHHHHHHHHHHHH____EEEEEEE___EEEEEEEEEE____EEEEEEEE_
. . . . .
2801 STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVK 2850
______HHHHHH____________EEE__________________EEEEE
. . . . .
2851 FGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTII 2900
EEEEEEE___________________EEE____EEE______________
. . . . .
2901 NQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA 2950
_________________EEE___EEEEEEE____________________
. . . . .
2951 AVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT 3000
___________________________________HHHHHHHHHHEEEE_
. . . . .
3001 ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAG 3050
___HHHHH________EEEEEEE___HHHHHHHHH____HHHHHH_____
. . . . .
3051 QTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVST 3100
__EEEEEEHHHHHHHEEEE_______________________EEEEEEE_
. . . . .
3101 EPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK 3150
___EEE_________________EEEEEEE____EEEEEEE_________
. .
3151 FGSQKECEKVCAPVLAKPGVISVMGT 3176
___HHHHHHHH_EEEE___EEEE___
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
method : 1
alpha-contents : 11.9 %
beta-contents : 30.2 %
coil-contents : 57.8 %
class : beta
method : 2
alpha-contents : 0.0 %
beta-contents : 27.6 %
coil-contents : 72.4 %
class : beta
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
GPI: learning from metazoa
-15.24 -2.85 -0.37 -1.57 -4.00 0.00 -32.00 0.00 0.00 -11.24 -3.43 -12.00 -12.00 0.00 0.00 0.00 -94.71
-11.82 -0.86 -0.70 -1.24 0.00 0.00 -12.00 0.00 -0.41 -11.24 -3.43 -12.00 -12.00 -16.00 -12.00 0.00 -93.70
ID: tem12gi|3127926|emb|CAA36267.1| AC: xxx Len: 3150 1:I 3136 Sc: -93.70 Pv: 9.663929e-01 NO_GPI_SITE
GPI: learning from protozoa
-29.48 -2.60 -0.58 -0.26 -4.00 -4.00 0.00 0.00 -0.34 -8.49 -11.73 -12.00 -12.00 -16.00 -12.00 0.00 -113.48
-24.59 -0.42 -0.73 -1.35 -4.00 0.00 -8.00 0.00 -0.59 -9.51 -11.73 -12.00 -12.00 -16.00 -12.00 0.00 -112.93
ID: tem12gi|3127926|emb|CAA36267.1| AC: xxx Len: 3150 1:I 3135 Sc: -112.93 Pv: 9.792899e-01 NO_GPI_SITE
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
/bio_software/1D/signal/signalp-1.2/signalp[161]: 13668 Bus error(coredump)
signalp: ERROR in sequence file(s), check syntax
/bio_software/1D/signal/signalp-1.2/signalp[161]: 13678 Bus error(coredump)
signalp: ERROR in sequence file(s), check syntax
/bio_software/1D/signal/signalp-1.2/signalp[161]: 13686 Bus error(coredump)
signalp: ERROR in sequence file(s), check syntax
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
low complexity regions: SEG 12 2.2 2.5
>tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
1-702 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQA
DVKNGAAADIIFLVDSSWTIGEEHFQLVRE
FLYDVVKSLAVGENDFHFALVQFNGNPHTE
FLLNTYRTKQEVLSHISNMSYIGGTNQTGK
GLEYIMQSHLTKAAGSRAGDGVPQVIVVLT
DGHSKDGLALPSAELKSADVNVFAIGVEDA
DEGALKEIASEPLNMHMFNLENFTSLHDIV
GNLVSCVHSSVSPERAGDTETLKDITAQDS
ADIIFLIDGSNNTGSVNFAVILDFLVNLLE
KLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQVLGAVKALGFAGGELANIGLALDFVV
ENHFTRAGGSRVEEGVPQVLVLISAGPSSD
EIRYGVVALKQASVFSFGLGAQAASRAELQ
HIATDDNLVFTVPEFRSFGDLQEKLLPYIV
GVAQRHIVLKPPTIVTQVIEVNKRDIVFLV
DGSSALGLANFNAIRDFIAKVIQRLEIGQD
LIQVAVAQYADTVRPEFYFNTHPTKREVIT
AVRKMKPLDGSALYTGSALDFVRNNLFTSS
AGYRAAEGIPKLLVLITGGKSLDEISQPAQ
ELKRSSIMAFAIGNKGADQAELEEIAFDSS
LVFIPAEFRAAPLQGMLPGLLAPLRTLSGT
PEVHSNKRDIIFLLDGSANVGKTNFPYVRD
FVMNLVNSLDIGNDNIRVGLVQFSDTPVTE
FSLNTYQTKSDI
lghlrqlqlqggsglntg 703-720
721-804 SALSYVYANHFTEAGGSRIREHVPQLLLLL
TAGQSEDSYLQAANALTRAGILTFCVGASQ
ANKAELEQIAFNPSLVYLMDDFSS
lpalpqqliqpl 805-816
817-1616 TTYVSGGVEEVPLAQPESKRDILFLFDGSA
NLVGQFPVVRDFLYKIIDELNVKPEGTRIA
VAQYSDDVKVESRFDEHQSKPEILNLVKRM
KIKTGKALNLGYALDYAQRYIFVKSAGSRI
EDGVLQFLVLLVAGRSSDRVDGPASNLKQS
GVVPFIFQAKNADPAELEQIVLSPAFILAA
ESLPKIGDLHPQIVNLLKSVHNGAPAPVSG
EKDVVFLLDGSEGVRSGFPLLKEFVQRVVE
SLDVGQDRVRVAVVQYSDRTRPEFYLNSYM
NKQDVVNAVRQLTLLGGPTPNTGAALEFVL
RNILVSSAGSRITEGVPQLLIVLTADRSGD
DVRNPSVVVKRGGAVPIGIGIGNADITEMQ
TISFIPDFAVAIPTFRQLGTVQQVISERVT
QLTREELSRLQPVLQPLPSPGVGGKRDVVF
LIDGSQSAGPEFQYVRTLIERLVDYLDVGF
DTTRVAVIQFSDDPKAEFLLNAHSSKDEVQ
NAVQRLRPKGGRQINVGNALEYVSRNIFKR
PLGSRIEEGVPQFLVLISSGKSDDEVVVPA
VELKQFGVAPFTIARNADQEELVKISLSPE
YVFSVSTFRELPSLEQKLLTPITTLTSEQI
QKLLASTRYPPPAVESDAADIVFLIDSSEG
VRPDGFAHIRDFVSRIVRRLNIGPSKVRVG
VVQFSNDVFPEFYLKTYRSQAPVLDAIRRL
RLRGGSPLNTGKALEFVARNLFVKSAGSRI
EDGVPQHLVLVLGGKSQDDVSRFAQVIRSS
GIVSLGVGDRNIDRTELQTITNDPRLVFTV
REFRELPNIEERIMNSFGPS
aatpappgvdtppp 1617-1630
1631-1801 SRPEKKKADIVFLLDGSINFRRDSFQEVLR
FVSEIVDTVYEDGDSIQVGLVQYNSDPTDE
FFLKDFSTKRQIIDAINKVVYKGGRHANTK
VGLEHLRVNHFVPEAGSRLDQRVPQIAFVI
TGGKSVEDAQDVSLALTQRGVKVFAVGVRN
IDSEEVGKIASNSATAFRVGN
vqelselseqvletl 1802-1816
1817-2001 HDAMHETLCPGVTDAAKACNLDVILGFDGS
RDQNVFVAQKGFESKVDAILNRISQMHRVS
CSGGRSPTVRVSVVANTPSGPVEAFDFDEY
QPEMLEKFRNMRSQHPYVLTEDTLKVYLNK
FRQSSPDSVKVVIHFTDGADGDLADLHRAS
ENLRQEGVRALILVGLERVVNLERLMHLEF
GRGFM
ydrplrlnlldldyel 2002-2017
2018-2043 AEQLDNIAEKACCGVPCKCSGQRGDR
gpigsigpkgipgedgyrgypgdeggpger 2044-2077
gppg
2078-2103 VNGTQGFQGCPGQRGVKGSRGFPGEK
gevgeigldgldgedgdkglpg 2104-2125
2126-2176 SSGEKGNPGRRGDKGPRGEKGERGDVGIRG
DPGNPGQDSQERGPKGETGDL
gpmgvpgrdgvpggpgetgknggfgrrgpp 2177-2225
gakgnkggpgqpgfegeqg
2226-2227 TR
gaqgpagpagppg 2228-2240
2241-2242 LI
geqgisgprgsggargapgergrtgplgrk 2243-2294
gepgepgpkggignpgprgetg
2295-2299 DDGRD
gvgsegrrgkkgerg 2300-2314
2315-2355 FPGYPGPKGNPGEPGLNGTTGPKGIRGRRG
NSGPPGIVGQK
grpgypgpagprgnrg 2356-2371
2372-2855 DSIDQCALIQSIKDKCPCCYGPLECPVFPT
ELAFALDTSEGVNQDTFGRMRDVVLSIVNV
LTIAESNCPTGARVAVVTYNNEVTTEIRFA
DSKRKSVLLDKIKNLQVALTSKQQSLETAM
SFVARNTFKRVRNGFLMRKVAVFFSNTPTR
ASPQLREAVLKLSDAGITPLFLTRQEDRQL
INALQINNTAVGHALVLPAGRDLTDFLENV
LTCHVCLDICNIDPSCGFGSWRPSFRDRRA
AGSDVDIDMAFILDSAETTTLFQFNEMKKY
IAYLVRQLDMSPDPKASQHFARVAVVQHAP
SESVDNASMPPVKVEFSLTDYGSKEKLVDF
LSRGMTQLQGTRALGSAIEYTIENVFESAP
NPRDLKIVVLMLTGEVPEQQLEEAQRVILQ
AKCKGYFFVVLGIGRKVNIKEVYTFASEPN
DVFFKLVDKSTELNEEPLMRFGRLLPSFVS
SENAFYLSPDIRKQCDWFQGDQPTKNLVKF
GHKQ
vnvpnnvtssptsnpvtttkpvtttkpvtt 2856-2898
ttkpvttttkpvt
2899-2904 IINQPS
vkpaaakpapakpvaakpvatktatvrppv 2905-2966
avkpataakpvaakpaavrppaaaakpvat
kp
2967-2972 EVPRPQ
aakpaatkpattkp 2973-2986
2987-3073 VVKMLREVQVFEITENSAKLHWERPEPPGP
YFYDLTVTSAHDQSLVLKQNLTVTDRVIGG
LLAGQTYHVAVVCYLRSQVRATYHGSF
stkksqppppqparsassst 3074-3093
3094-3176 INLMVSTEPLALTETDICKLPKDEGTCRDF
ILKWYYDPNTKSCARFWYGGCGGNENKFGS
QKECEKVCAPVLAKPGVISVMGT
low complexity regions: SEG 25 3.0 3.3
>tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
1-305 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQA
DVKNGAAADIIFLVDSSWTIGEEHFQLVRE
FLYDVVKSLAVGENDFHFALVQFNGNPHTE
FLLNTYRTKQEVLSHISNMSYIGGTNQTGK
GLEYIMQSHLTKAAGSRAGDGVPQVIVVLT
DGHSKDGLALPSAELKSADVNVFAIGVEDA
DEGALKEIASEPLNMHMFNLENFTSLHDIV
GNLVSCVHSSVSPERAGDTETLKDITAQDS
ADIIFLIDGSNNTGSVNFAVILDFLVNLLE
KLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQV
lgavkalgfaggelaniglal 306-326
327-1050 DFVVENHFTRAGGSRVEEGVPQVLVLISAG
PSSDEIRYGVVALKQASVFSFGLGAQAASR
AELQHIATDDNLVFTVPEFRSFGDLQEKLL
PYIVGVAQRHIVLKPPTIVTQVIEVNKRDI
VFLVDGSSALGLANFNAIRDFIAKVIQRLE
IGQDLIQVAVAQYADTVRPEFYFNTHPTKR
EVITAVRKMKPLDGSALYTGSALDFVRNNL
FTSSAGYRAAEGIPKLLVLITGGKSLDEIS
QPAQELKRSSIMAFAIGNKGADQAELEEIA
FDSSLVFIPAEFRAAPLQGMLPGLLAPLRT
LSGTPEVHSNKRDIIFLLDGSANVGKTNFP
YVRDFVMNLVNSLDIGNDNIRVGLVQFSDT
PVTEFSLNTYQTKSDILGHLRQLQLQGGSG
LNTGSALSYVYANHFTEAGGSRIREHVPQL
LLLLTAGQSEDSYLQAANALTRAGILTFCV
GASQANKAELEQIAFNPSLVYLMDDFSSLP
ALPQQLIQPLTTYVSGGVEEVPLAQPESKR
DILFLFDGSANLVGQFPVVRDFLYKIIDEL
NVKPEGTRIAVAQYSDDVKVESRFDEHQSK
PEILNLVKRMKIKTGKALNLGYALDYAQRY
IFVKSAGSRIEDGVLQFLVLLVAGRSSDRV
DGPASNLKQSGVVPFIFQAKNADPAELEQI
VLSPAFILAAESLPKIGDLHPQIVNLLKSV
HNGAPAPVSGEKDVVFLLDGSEGVRSGFPL
LKEF
vqrvvesldvgqdrvrvavvqysdrtr 1051-1077
1078-1191 PEFYLNSYMNKQDVVNAVRQLTLLGGPTPN
TGAALEFVLRNILVSSAGSRITEGVPQLLI
VLTADRSGDDVRNPSVVVKRGGAVPIGIGI
GNADITEMQTISFIPDFAVAIPTF
rqlgtvqqviservtqltreelsrlqpvlq 1192-1230
plpspgvgg
1231-1396 KRDVVFLIDGSQSAGPEFQYVRTLIERLVD
YLDVGFDTTRVAVIQFSDDPKAEFLLNAHS
SKDEVQNAVQRLRPKGGRQINVGNALEYVS
RNIFKRPLGSRIEEGVPQFLVLISSGKSDD
EVVVPAVELKQFGVAPFTIARNADQEELVK
ISLSPEYVFSVSTFRE
lpsleqklltpittltseqiqkll 1397-1420
1421-1613 ASTRYPPPAVESDAADIVFLIDSSEGVRPD
GFAHIRDFVSRIVRRLNIGPSKVRVGVVQF
SNDVFPEFYLKTYRSQAPVLDAIRRLRLRG
GSPLNTGKALEFVARNLFVKSAGSRIEDGV
PQHLVLVLGGKSQDDVSRFAQVIRSSGIVS
LGVGDRNIDRTELQTITNDPRLVFTVREFR
ELPNIEERIMNSF
gpsaatpappgvdtpppsrp 1614-1633
1634-1873 EKKKADIVFLLDGSINFRRDSFQEVLRFVS
EIVDTVYEDGDSIQVGLVQYNSDPTDEFFL
KDFSTKRQIIDAINKVVYKGGRHANTKVGL
EHLRVNHFVPEAGSRLDQRVPQIAFVITGG
KSVEDAQDVSLALTQRGVKVFAVGVRNIDS
EEVGKIASNSATAFRVGNVQELSELSEQVL
ETLHDAMHETLCPGVTDAAKACNLDVILGF
DGSRDQNVFVAQKGFESKVDAILNRISQMH
rvscsggrsptvrvsvvantpsgpv 1874-1898
1899-1968 EAFDFDEYQPEMLEKFRNMRSQHPYVLTED
TLKVYLNKFRQSSPDSVKVVIHFTDGADGD
LADLHRASEN
lrqegvralilvglervvnlerlmhlefgr 1969-1999
g
2000-2036 FMYDRPLRLNLLDLDYELAEQLDNIAEKAC
CGVPCKC
sgqrgdrgpigsigpkgipgedgyrgypgd 2037-2372
eggpgergppgvngtqgfqgcpgqrgvkgs
rgfpgekgevgeigldgldgedgdkglpgs
sgekgnpgrrgdkgprgekgergdvgirgd
pgnpgqdsqergpkgetgdlgpmgvpgrdg
vpggpgetgknggfgrrgppgakgnkggpg
qpgfegeqgtrgaqgpagpagppgligeqg
isgprgsggargapgergrtgplgrkgepg
epgpkggignpgprgetgddgrdgvgsegr
rgkkgergfpgypgpkgnpgepglngttgp
kgirgrrgnsgppgivgqkgrpgypgpagp
rgnrgd
2373-2853 SIDQCALIQSIKDKCPCCYGPLECPVFPTE
LAFALDTSEGVNQDTFGRMRDVVLSIVNVL
TIAESNCPTGARVAVVTYNNEVTTEIRFAD
SKRKSVLLDKIKNLQVALTSKQQSLETAMS
FVARNTFKRVRNGFLMRKVAVFFSNTPTRA
SPQLREAVLKLSDAGITPLFLTRQEDRQLI
NALQINNTAVGHALVLPAGRDLTDFLENVL
TCHVCLDICNIDPSCGFGSWRPSFRDRRAA
GSDVDIDMAFILDSAETTTLFQFNEMKKYI
AYLVRQLDMSPDPKASQHFARVAVVQHAPS
ESVDNASMPPVKVEFSLTDYGSKEKLVDFL
SRGMTQLQGTRALGSAIEYTIENVFESAPN
PRDLKIVVLMLTGEVPEQQLEEAQRVILQA
KCKGYFFVVLGIGRKVNIKEVYTFASEPND
VFFKLVDKSTELNEEPLMRFGRLLPSFVSS
ENAFYLSPDIRKQCDWFQGDQPTKNLVKFG
H
kqvnvpnnvtssptsnpvtttkpvtttkpv 2854-2989
ttttkpvttttkpvtiinqpsvkpaaakpa
pakpvaakpvatktatvrppvavkpataak
pvaakpaavrppaaaakpvatkpevprpqa
akpaatkpattkpvvk
2990-3176 MLREVQVFEITENSAKLHWERPEPPGPYFY
DLTVTSAHDQSLVLKQNLTVTDRVIGGLLA
GQTYHVAVVCYLRSQVRATYHGSFSTKKSQ
PPPPQPARSASSSTINLMVSTEPLALTETD
ICKLPKDEGTCRDFILKWYYDPNTKSCARF
WYGGCGGNENKFGSQKECEKVCAPVLAKPG
VISVMGT
low complexity regions: SEG 45 3.4 3.75
>tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
1-926 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQA
DVKNGAAADIIFLVDSSWTIGEEHFQLVRE
FLYDVVKSLAVGENDFHFALVQFNGNPHTE
FLLNTYRTKQEVLSHISNMSYIGGTNQTGK
GLEYIMQSHLTKAAGSRAGDGVPQVIVVLT
DGHSKDGLALPSAELKSADVNVFAIGVEDA
DEGALKEIASEPLNMHMFNLENFTSLHDIV
GNLVSCVHSSVSPERAGDTETLKDITAQDS
ADIIFLIDGSNNTGSVNFAVILDFLVNLLE
KLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQVLGAVKALGFAGGELANIGLALDFVV
ENHFTRAGGSRVEEGVPQVLVLISAGPSSD
EIRYGVVALKQASVFSFGLGAQAASRAELQ
HIATDDNLVFTVPEFRSFGDLQEKLLPYIV
GVAQRHIVLKPPTIVTQVIEVNKRDIVFLV
DGSSALGLANFNAIRDFIAKVIQRLEIGQD
LIQVAVAQYADTVRPEFYFNTHPTKREVIT
AVRKMKPLDGSALYTGSALDFVRNNLFTSS
AGYRAAEGIPKLLVLITGGKSLDEISQPAQ
ELKRSSIMAFAIGNKGADQAELEEIAFDSS
LVFIPAEFRAAPLQGMLPGLLAPLRTLSGT
PEVHSNKRDIIFLLDGSANVGKTNFPYVRD
FVMNLVNSLDIGNDNIRVGLVQFSDTPVTE
FSLNTYQTKSDILGHLRQLQLQGGSGLNTG
SALSYVYANHFTEAGGSRIREHVPQLLLLL
TAGQSEDSYLQAANALTRAGILTFCVGASQ
ANKAELEQIAFNPSLVYLMDDFSSLPALPQ
QLIQPLTTYVSGGVEEVPLAQPESKRDILF
LFDGSANLVGQFPVVRDFLYKIIDELNVKP
EGTRIAVAQYSDDVKVESRFDEHQSKPEIL
NLVKRMKIKTGKALNLGYALDYAQRY
ifvksagsriedgvlqflvllvagrssdrv 927-1070
dgpasnlkqsgvvpfifqaknadpaeleqi
vlspafilaaeslpkigdlhpqivnllksv
hngapapvsgekdvvflldgsegvrsgfpl
lkefvqrvvesldvgqdrvrvavv
1071-1363 QYSDRTRPEFYLNSYMNKQDVVNAVRQLTL
LGGPTPNTGAALEFVLRNILVSSAGSRITE
GVPQLLIVLTADRSGDDVRNPSVVVKRGGA
VPIGIGIGNADITEMQTISFIPDFAVAIPT
FRQLGTVQQVISERVTQLTREELSRLQPVL
QPLPSPGVGGKRDVVFLIDGSQSAGPEFQY
VRTLIERLVDYLDVGFDTTRVAVIQFSDDP
KAEFLLNAHSSKDEVQNAVQRLRPKGGRQI
NVGNALEYVSRNIFKRPLGSRIEEGVPQFL
VLISSGKSDDEVVVPAVELKQFG
vapftiarnadqeelvkislspeyvfsvst 1364-1444
frelpsleqklltpittltseqiqkllast
rypppavesdaadivflidss
1445-1952 EGVRPDGFAHIRDFVSRIVRRLNIGPSKVR
VGVVQFSNDVFPEFYLKTYRSQAPVLDAIR
RLRLRGGSPLNTGKALEFVARNLFVKSAGS
RIEDGVPQHLVLVLGGKSQDDVSRFAQVIR
SSGIVSLGVGDRNIDRTELQTITNDPRLVF
TVREFRELPNIEERIMNSFGPSAATPAPPG
VDTPPPSRPEKKKADIVFLLDGSINFRRDS
FQEVLRFVSEIVDTVYEDGDSIQVGLVQYN
SDPTDEFFLKDFSTKRQIIDAINKVVYKGG
RHANTKVGLEHLRVNHFVPEAGSRLDQRVP
QIAFVITGGKSVEDAQDVSLALTQRGVKVF
AVGVRNIDSEEVGKIASNSATAFRVGNVQE
LSELSEQVLETLHDAMHETLCPGVTDAAKA
CNLDVILGFDGSRDQNVFVAQKGFESKVDA
ILNRISQMHRVSCSGGRSPTVRVSVVANTP
SGPVEAFDFDEYQPEMLEKFRNMRSQHPYV
LTEDTLKVYLNKFRQSSPDSVKVVIHFT
dgadgdladlhrasenlrqegvralilvgl 1953-2026
ervvnlerlmhlefgrgfmydrplrlnlld
ldyelaeqldniae
2027-2036 KACCGVPCKC
sgqrgdrgpigsigpkgipgedgyrgypgd 2037-2372
eggpgergppgvngtqgfqgcpgqrgvkgs
rgfpgekgevgeigldgldgedgdkglpgs
sgekgnpgrrgdkgprgekgergdvgirgd
pgnpgqdsqergpkgetgdlgpmgvpgrdg
vpggpgetgknggfgrrgppgakgnkggpg
qpgfegeqgtrgaqgpagpagppgligeqg
isgprgsggargapgergrtgplgrkgepg
epgpkggignpgprgetgddgrdgvgsegr
rgkkgergfpgypgpkgnpgepglngttgp
kgirgrrgnsgppgivgqkgrpgypgpagp
rgnrgd
2373-2853 SIDQCALIQSIKDKCPCCYGPLECPVFPTE
LAFALDTSEGVNQDTFGRMRDVVLSIVNVL
TIAESNCPTGARVAVVTYNNEVTTEIRFAD
SKRKSVLLDKIKNLQVALTSKQQSLETAMS
FVARNTFKRVRNGFLMRKVAVFFSNTPTRA
SPQLREAVLKLSDAGITPLFLTRQEDRQLI
NALQINNTAVGHALVLPAGRDLTDFLENVL
TCHVCLDICNIDPSCGFGSWRPSFRDRRAA
GSDVDIDMAFILDSAETTTLFQFNEMKKYI
AYLVRQLDMSPDPKASQHFARVAVVQHAPS
ESVDNASMPPVKVEFSLTDYGSKEKLVDFL
SRGMTQLQGTRALGSAIEYTIENVFESAPN
PRDLKIVVLMLTGEVPEQQLEEAQRVILQA
KCKGYFFVVLGIGRKVNIKEVYTFASEPND
VFFKLVDKSTELNEEPLMRFGRLLPSFVSS
ENAFYLSPDIRKQCDWFQGDQPTKNLVKFG
H
kqvnvpnnvtssptsnpvtttkpvtttkpv 2854-2989
ttttkpvttttkpvtiinqpsvkpaaakpa
pakpvaakpvatktatvrppvavkpataak
pvaakpaavrppaaaakpvatkpevprpqa
akpaatkpattkpvvk
2990-3176 MLREVQVFEITENSAKLHWERPEPPGPYFY
DLTVTSAHDQSLVLKQNLTVTDRVIGGLLA
GQTYHVAVVCYLRSQVRATYHGSFSTKKSQ
PPPPQPARSASSSTINLMVSTEPLALTETD
ICKLPKDEGTCRDFILKWYYDPNTKSCARF
WYGGCGGNENKFGSQKECEKVCAPVLAKPG
VISVMGT
low complexity regions: XNU
# Score cutoff = 21, Search from offsets 1 to 4
# both members of each repeat flagged
# lambda = 0.347, K = 0.200, H = 0.664
>tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
MRKHRHLPLVAVFCLFLSGFPTTHAqqqqadvkngaaadiiflvDSSWTIGEEHFQLVRE
FLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGK
GLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDA
DEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDS
ADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSD
EIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIV
GVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD
LIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSS
AGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS
LVFIPAEFRAAPlqgmlpgllaplRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRD
FVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTG
SALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQ
ANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILF
LFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL
NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPA
SNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGA
PAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEF
YLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLT
ADRSGDDVRNPSVVVKRGGavpigigignadITEMQTISFIPDFAVAIPTFRQLGTVQQV
ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVD
YLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVS
RNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVVVPAVELKQFGVAPFTIARNADQEELVK
ISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFL
IDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL
DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFA
QVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGpsaatp
appgvdtpppsrpekkkADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL
VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLD
QRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG
NVQELSELSeqvletlhdamhetlCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFES
KVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQ
HPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILV
GLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSgqr
gdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfp
gekgevgeigldgldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnp
gqdsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgf
egeqgtrgaqgpagpagppgligeqgisgprgsggargapgergrtgplgrkgepgepgp
kggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglngttgpkgir
grrgnsgppgivgqkgrpgypgpagprgnrgdSIDQCALIQSIKDKCPCCYGPLECPVFP
TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRF
ADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPT
RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLEN
VLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKK
YIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD
FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVIL
QAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFV
SSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVnvpnnvtssptsnpvtttkpvttt
kpvttttkpvttttkpvtiiNQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPAT
AAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT
ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCY
LRSQVRATYHGSFstkksqppppqparsassstINLMVSTEPLALTETDICKLPKDEGTC
RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT
1 - 25 MRKHRHLPLV AVFCLFLSGF PTTHA
26 - 44 qqqqa dvkngaaadi iflv
45 - 612 DSSWTI GEEHFQLVRE FLYDVVKSLA VGENDFHFAL VQFNGNPHTE FLLNTYRTKQ EVLS
HISNMS YIGGTNQTGK GLEYIMQSHL TKAAGSRAGD GVPQVIVVLT DGHSKDGLAL PSAE
LKSADV NVFAIGVEDA DEGALKEIAS EPLNMHMFNL ENFTSLHDIV GNLVSCVHSS VSPE
RAGDTE TLKDITAQDS ADIIFLIDGS NNTGSVNFAV ILDFLVNLLE KLPIGTQQIR VGVV
QFSDEP RTMFSLDTYS TKAQVLGAVK ALGFAGGELA NIGLALDFVV ENHFTRAGGS RVEE
GVPQVL VLISAGPSSD EIRYGVVALK QASVFSFGLG AQAASRAELQ HIATDDNLVF TVPE
FRSFGD LQEKLLPYIV GVAQRHIVLK PPTIVTQVIE VNKRDIVFLV DGSSALGLAN FNAI
RDFIAK VIQRLEIGQD LIQVAVAQYA DTVRPEFYFN THPTKREVIT AVRKMKPLDG SALY
TGSALD FVRNNLFTSS AGYRAAEGIP KLLVLITGGK SLDEISQPAQ ELKRSSIMAF AIGN
KGADQA ELEEIAFDSS LVFIPAEFRA AP
613 - 624 lqgmlpgl lapl
625 - 1159 RTLSGT PEVHSNKRDI IFLLDGSANV GKTNFPYVRD FVMNLVNSLD IGNDNIRVGL VQFS
DTPVTE FSLNTYQTKS DILGHLRQLQ LQGGSGLNTG SALSYVYANH FTEAGGSRIR EHVP
QLLLLL TAGQSEDSYL QAANALTRAG ILTFCVGASQ ANKAELEQIA FNPSLVYLMD DFSS
LPALPQ QLIQPLTTYV SGGVEEVPLA QPESKRDILF LFDGSANLVG QFPVVRDFLY KIID
ELNVKP EGTRIAVAQY SDDVKVESRF DEHQSKPEIL NLVKRMKIKT GKALNLGYAL DYAQ
RYIFVK SAGSRIEDGV LQFLVLLVAG RSSDRVDGPA SNLKQSGVVP FIFQAKNADP AELE
QIVLSP AFILAAESLP KIGDLHPQIV NLLKSVHNGA PAPVSGEKDV VFLLDGSEGV RSGF
PLLKEF VQRVVESLDV GQDRVRVAVV QYSDRTRPEF YLNSYMNKQD VVNAVRQLTL LGGP
TPNTGA ALEFVLRNIL VSSAGSRITE GVPQLLIVLT ADRSGDDVRN PSVVVKRGG
1160 - 1171 a vpigigigna d
1172 - 1614 ITEMQTISF IPDFAVAIPT FRQLGTVQQV ISERVTQLTR EELSRLQPVL QPLPSPGVGG K
RDVVFLIDG SQSAGPEFQY VRTLIERLVD YLDVGFDTTR VAVIQFSDDP KAEFLLNAHS S
KDEVQNAVQ RLRPKGGRQI NVGNALEYVS RNIFKRPLGS RIEEGVPQFL VLISSGKSDD E
VVVPAVELK QFGVAPFTIA RNADQEELVK ISLSPEYVFS VSTFRELPSL EQKLLTPITT L
TSEQIQKLL ASTRYPPPAV ESDAADIVFL IDSSEGVRPD GFAHIRDFVS RIVRRLNIGP S
KVRVGVVQF SNDVFPEFYL KTYRSQAPVL DAIRRLRLRG GSPLNTGKAL EFVARNLFVK S
AGSRIEDGV PQHLVLVLGG KSQDDVSRFA QVIRSSGIVS LGVGDRNIDR TELQTITNDP R
LVFTVREFR ELPNIEERIM NSFG
1615 - 1637 psaatp appgvdtppp srpekkk
1638 - 1809 ADI VFLLDGSINF RRDSFQEVLR FVSEIVDTVY EDGDSIQVGL VQYNSDPTDE FFLKDFS
TKR QIIDAINKVV YKGGRHANTK VGLEHLRVNH FVPEAGSRLD QRVPQIAFVI TGGKSVE
DAQ DVSLALTQRG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG NVQELSELS
1810 - 1824 e qvletlhdam hetl
1825 - 2037 CPGVTD AAKACNLDVI LGFDGSRDQN VFVAQKGFES KVDAILNRIS QMHRVSCSGG RSPT
VRVSVV ANTPSGPVEA FDFDEYQPEM LEKFRNMRSQ HPYVLTEDTL KVYLNKFRQS SPDS
VKVVIH FTDGADGDLA DLHRASENLR QEGVRALILV GLERVVNLER LMHLEFGRGF MYDR
PLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCS
2038 - 2372 gqr gdrgpigsig pkgipgedgy rgypgdeggp gergppgvng tqgfqgcpgq rgvkgsr
gfp gekgevgeig ldgldgedgd kglpgssgek gnpgrrgdkg prgekgergd vgirgdp
gnp gqdsqergpk getgdlgpmg vpgrdgvpgg pgetgknggf grrgppgakg nkggpgq
pgf egeqgtrgaq gpagpagppg ligeqgisgp rgsggargap gergrtgplg rkgepge
pgp kggignpgpr getgddgrdg vgsegrrgkk gergfpgypg pkgnpgepgl ngttgpk
gir grrgnsgppg ivgqkgrpgy pgpagprgnr gd
2373 - 2856 SIDQCALI QSIKDKCPCC YGPLECPVFP TELAFALDTS EGVNQDTFGR MRDVVLSIVN VL
TIAESNCP TGARVAVVTY NNEVTTEIRF ADSKRKSVLL DKIKNLQVAL TSKQQSLETA MS
FVARNTFK RVRNGFLMRK VAVFFSNTPT RASPQLREAV LKLSDAGITP LFLTRQEDRQ LI
NALQINNT AVGHALVLPA GRDLTDFLEN VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR AA
GSDVDIDM AFILDSAETT TLFQFNEMKK YIAYLVRQLD MSPDPKASQH FARVAVVQHA PS
ESVDNASM PPVKVEFSLT DYGSKEKLVD FLSRGMTQLQ GTRALGSAIE YTIENVFESA PN
PRDLKIVV LMLTGEVPEQ QLEEAQRVIL QAKCKGYFFV VLGIGRKVNI KEVYTFASEP ND
VFFKLVDK STELNEEPLM RFGRLLPSFV SSENAFYLSP DIRKQCDWFQ GDQPTKNLVK FG
HKQV
2857 - 2900 nvpn nvtssptsnp vtttkpvttt kpvttttkpv ttttkpvtii
2901 - 3073 NQPSVKPAAA KPAPAKPVAA KPVATKTATV RPPVAVKPAT AAKPVAAKPA AVRPPAAAAK
PVATKPEVPR PQAAKPAATK PATTKPVVKM LREVQVFEIT ENSAKLHWER PEPPGPYFYD
LTVTSAHDQS LVLKQNLTVT DRVIGGLLAG QTYHVAVVCY LRSQVRATYH GSF
3074 - 3093 stkksqp pppqparsas sst
3094 - 3176 INLMVST EPLALTETDI CKLPKDEGTC RDFILKWYYD PNTKSCARFW YGGCGGNENK FGS
QKECEKV CAPVLAKPGV ISVMGT
low complexity regions: DUST
>tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVRE
FLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGK
GLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDA
DEGALKEIASEPLNMHMFNLENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDS
ADIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSD
EIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVFTVPEFRSFGDLQEKLLPYIV
GVAQRHIVLKPPTIVTQVIEVNKRDIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD
LIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSS
AGYRAAEGIPKLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS
LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANVGKTNFPYVRD
FVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDILGHLRQLQLQGGSGLNTG
SALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGASQ
ANKAELEQIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILF
LFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL
NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDRVDGPA
SNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGA
PAPVSGEKDVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEF
YLNSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLT
ADRSGDDVRNPSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV
ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQYVRTLIERLVD
YLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVS
RNIFKRPLGSRIEEGVPQFLVLISSGKSDDEVVVPAVELKQFGVAPFTIARNADQEELVK
ISLSPEYVFSVSTFRELPSLEQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFL
IDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL
DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFA
QVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATP
APPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGL
VQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLD
QRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG
NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFES
KVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQ
HPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILV
GLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQR
GDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP
GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP
GQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGF
EGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGP
KGGIGNPGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIR
GRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP
TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRF
ADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPT
RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLEN
VLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKK
YIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD
FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVIL
QAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFV
SSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTT
KPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPAT
AAKPVAAKPAAVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT
ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCY
LRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTC
RDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
coiled coil prediction for tem12gi|3127926|emb|CAA36267.1|
sequence: 3150 amino acids, 21 residue(s) in coiled coil state
Coil 1 * 2468* 2489* LLDKIKNLQVALTSKQQSLETA
. | . | . | . | . | . 60
MRKHRHLPLV AVFCLFLSGF PTTHAQQQQA DVKNGAAADI IFLVDSSWTI GEEHFQLVRE
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 120
FLYDVVKSLA VGENDFHFAL VQFNGNPHTE FLLNTYRTKQ EVLSHISNMS YIGGTNQTGK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 180
GLEYIMQSHL TKAAGSRAGD GVPQVIVVLT DGHSKDGLAL PSAELKSADV NVFAIGVEDA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 240
DEGALKEIAS EPLNMHMFNL ENFTSLHDIV GNLVSCVHSS VSPERAGDTE TLKDITAQDS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 300
ADIIFLIDGS NNTGSVNFAV ILDFLVNLLE KLPIGTQQIR VGVVQFSDEP RTMFSLDTYS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 360
TKAQVLGAVK ALGFAGGELA NIGLALDFVV ENHFTRAGGS RVEEGVPQVL VLISAGPSSD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 420
EIRYGVVALK QASVFSFGLG AQAASRAELQ HIATDDNLVF TVPEFRSFGD LQEKLLPYIV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 480
GVAQRHIVLK PPTIVTQVIE VNKRDIVFLV DGSSALGLAN FNAIRDFIAK VIQRLEIGQD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 540
LIQVAVAQYA DTVRPEFYFN THPTKREVIT AVRKMKPLDG SALYTGSALD FVRNNLFTSS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 600
AGYRAAEGIP KLLVLITGGK SLDEISQPAQ ELKRSSIMAF AIGNKGADQA ELEEIAFDSS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 660
LVFIPAEFRA APLQGMLPGL LAPLRTLSGT PEVHSNKRDI IFLLDGSANV GKTNFPYVRD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 720
FVMNLVNSLD IGNDNIRVGL VQFSDTPVTE FSLNTYQTKS DILGHLRQLQ LQGGSGLNTG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 780
SALSYVYANH FTEAGGSRIR EHVPQLLLLL TAGQSEDSYL QAANALTRAG ILTFCVGASQ
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 840
ANKAELEQIA FNPSLVYLMD DFSSLPALPQ QLIQPLTTYV SGGVEEVPLA QPESKRDILF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 900
LFDGSANLVG QFPVVRDFLY KIIDELNVKP EGTRIAVAQY SDDVKVESRF DEHQSKPEIL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 960
NLVKRMKIKT GKALNLGYAL DYAQRYIFVK SAGSRIEDGV LQFLVLLVAG RSSDRVDGPA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1020
SNLKQSGVVP FIFQAKNADP AELEQIVLSP AFILAAESLP KIGDLHPQIV NLLKSVHNGA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1080
PAPVSGEKDV VFLLDGSEGV RSGFPLLKEF VQRVVESLDV GQDRVRVAVV QYSDRTRPEF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1140
YLNSYMNKQD VVNAVRQLTL LGGPTPNTGA ALEFVLRNIL VSSAGSRITE GVPQLLIVLT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1200
ADRSGDDVRN PSVVVKRGGA VPIGIGIGNA DITEMQTISF IPDFAVAIPT FRQLGTVQQV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1260
ISERVTQLTR EELSRLQPVL QPLPSPGVGG KRDVVFLIDG SQSAGPEFQY VRTLIERLVD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1320
YLDVGFDTTR VAVIQFSDDP KAEFLLNAHS SKDEVQNAVQ RLRPKGGRQI NVGNALEYVS
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~14 4444444444 444~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1380
RNIFKRPLGS RIEEGVPQFL VLISSGKSDD EVVVPAVELK QFGVAPFTIA RNADQEELVK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1440
ISLSPEYVFS VSTFRELPSL EQKLLTPITT LTSEQIQKLL ASTRYPPPAV ESDAADIVFL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1500
IDSSEGVRPD GFAHIRDFVS RIVRRLNIGP SKVRVGVVQF SNDVFPEFYL KTYRSQAPVL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1560
DAIRRLRLRG GSPLNTGKAL EFVARNLFVK SAGSRIEDGV PQHLVLVLGG KSQDDVSRFA
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1620
QVIRSSGIVS LGVGDRNIDR TELQTITNDP RLVFTVREFR ELPNIEERIM NSFGPSAATP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1680
APPGVDTPPP SRPEKKKADI VFLLDGSINF RRDSFQEVLR FVSEIVDTVY EDGDSIQVGL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1740
VQYNSDPTDE FFLKDFSTKR QIIDAINKVV YKGGRHANTK VGLEHLRVNH FVPEAGSRLD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1800
QRVPQIAFVI TGGKSVEDAQ DVSLALTQRG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1860
NVQELSELSE QVLETLHDAM HETLCPGVTD AAKACNLDVI LGFDGSRDQN VFVAQKGFES
1222222222 2222222222 22~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
gabcdefgab cdefgabcde fg-------- ---------- ---------- ---------- * 21 M'95 -w register
~111111111 1111111111 11~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
1133333333 333333~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~22 * 14 M'95 -w local
. | . | . | . | . | . 1920
KVDAILNRIS QMHRVSCSGG RSPTVRVSVV ANTPSGPVEA FDFDEYQPEM LEKFRNMRSQ
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
2222222222 22~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 1980
HPYVLTEDTL KVYLNKFRQS SPDSVKVVIH FTDGADGDLA DLHRASENLR QEGVRALILV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~477 7777777777 77~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2040
GLERVVNLER LMHLEFGRGF MYDRPLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCSGQR
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~33333 3333333333 333333~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- -----defga bcdefgabcd efgabc---- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~1199999 9999999999 9999992~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~44444 4444444444 444444~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~1111 1111111111 111111~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2100
GDRGPIGSIG PKGIPGEDGY RGYPGDEGGP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2160
GEKGEVGEIG LDGLDGEDGD KGLPGSSGEK GNPGRRGDKG PRGEKGERGD VGIRGDPGNP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2220
GQDSQERGPK GETGDLGPMG VPGRDGVPGG PGETGKNGGF GRRGPPGAKG NKGGPGQPGF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2280
EGEQGTRGAQ GPAGPAGPPG LIGEQGISGP RGSGGARGAP GERGRTGPLG RKGEPGEPGP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2340
KGGIGNPGPR GETGDDGRDG VGSEGRRGKK GERGFPGYPG PKGNPGEPGL NGTTGPKGIR
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2400
GRRGNSGPPG IVGQKGRPGY PGPAGPRGNR GDSIDQCALI QSIKDKCPCC YGPLECPVFP
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2460
TELAFALDTS EGVNQDTFGR MRDVVLSIVN VLTIAESNCP TGARVAVVTY NNEVTTEIRF
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2520
ADSKRKSVLL DKIKNLQVAL TSKQQSLETA MSFVARNTFK RVRNGFLMRK VAVFFSNTPT
~~~1111466 6666666666 6666666664 42~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---fgabcde fgabcdefga bcdefgabcd ef-------- ---------- ---------- * 21 M'95 -w register
~~25557999 9999999999 9999999998 871~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~1111255 5555555555 5555555554 32~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~44444444 4444444444 4444444444 42~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~14444444 4444444222 22222111~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2580
RASPQLREAV LKLSDAGITP LFLTRQEDRQ LINALQINNT AVGHALVLPA GRDLTDFLEN
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2640
VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR AAGSDVDIDM AFILDSAETT TLFQFNEMKK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2700
YIAYLVRQLD MSPDPKASQH FARVAVVQHA PSESVDNASM PPVKVEFSLT DYGSKEKLVD
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2760
FLSRGMTQLQ GTRALGSAIE YTIENVFESA PNPRDLKIVV LMLTGEVPEQ QLEEAQRVIL
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~99 9999999999 * 14 M'95 -w local
. | . | . | . | . | . 2820
QAKCKGYFFV VLGIGRKVNI KEVYTFASEP NDVFFKLVDK STELNEEPLM RFGRLLPSFV
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
99954~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2880
SSENAFYLSP DIRKQCDWFQ GDQPTKNLVK FGHKQVNVPN NVTSSPTSNP VTTTKPVTTT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 2940
KPVTTTTKPV TTTTKPVTII NQPSVKPAAA KPAPAKPVAA KPVATKTATV RPPVAVKPAT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 3000
AAKPVAAKPA AVRPPAAAAK PVATKPEVPR PQAAKPAATK PATTKPVVKM LREVQVFEIT
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 3060
ENSAKLHWER PEPPGPYFYD LTVTSAHDQS LVLKQNLTVT DRVIGGLLAG QTYHVAVVCY
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . | . | . | . 3120
LRSQVRATYH GSFSTKKSQP PPPQPARSAS SSTINLMVST EPLALTETDI CKLPKDEGTC
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 -w border
---------- ---------- ---------- ---------- ---------- ---------- * 21 M'95 -w register
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 M'95 +w polar
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 21 MTK -w class
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 28 M'95 -w signif.
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ * 14 M'95 -w local
. | . | . |
RDFILKWYYD PNTKSCARFW YGGCGGNENK
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
---------- ---------- ----------
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
prediction of transmembrane regions with toppred2
***********************************
*TOPPREDM with eukaryotic function*
***********************************
tem12.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem12.___inter___
(1 sequences)
MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTI
GEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQ
EVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLT
DGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNL
ENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGS
NNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL
VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF
TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLV
DGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFN
THPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIP
KLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS
LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANV
GKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS
DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLL
TAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD
DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVG
QFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL
NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG
RSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLP
KIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF
VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTL
LGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRN
PSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV
ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQY
VRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQ
RLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD
EVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL
EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPD
GFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL
DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG
KSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR
ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINF
RRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKR
QIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI
TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG
NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQN
VFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEA
FDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIH
FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF
MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIG
PKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP
GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD
VGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGF
GRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP
RGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDG
VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPG
IVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP
TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY
NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFK
RVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQ
LINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFG
SWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLD
MSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD
FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQ
QLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK
STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVK
FGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTII
NQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA
AVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT
ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAG
QTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVST
EPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK
FGSQKECEKVCAPVLAKPGVISVMGT
(p)rokaryotic or (e)ukaryotic: e
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 8 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 6 26 1.801 Certain
2 364 384 0.741 Putative
3 1172 1192 0.606 Putative
4 3042 3062 0.834 Putative
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4
Loop length 5 337 787 1849 114
K+R profile 4.00 + +
+ +
CYT-EXT prof - 1.15 0.57
1.13 1.05
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.46
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 3 4
Loop length 5 1145 1849 114
K+R profile 4.00 +
+ +
CYT-EXT prof - 1.05
1.22 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.74
-> Orientation: N-in
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 1 2 4
Loop length 5 337 2657 114
K+R profile 4.00 +
+ +
CYT-EXT prof - 1.15
1.13 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.21
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.56
-> Orientation: N-in
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 1 4
Loop length 5 3015 114
K+R profile 4.00 +
+
CYT-EXT prof - 0.57
1.20
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.59
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.63
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 1 2 3
Loop length 5 337 787 1984
K+R profile 4.00 +
+ +
CYT-EXT prof - 1.15
1.13 1.08
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -1.06
-> Orientation: N-in
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 1 3
Loop length 5 1145 1984
K+R profile 4.00 +
+
CYT-EXT prof - 1.08
1.22
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.14
-> Orientation: N-in
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 2
Loop length 5 337 2792
K+R profile 4.00 +
+
CYT-EXT prof - 1.16
1.13
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 0.35
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: 0.03
-> Orientation: N-out
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 1
Loop length 5 3150
K+R profile 4.00
+
CYT-EXT prof -
1.21
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 4.00
Tm probability: 1.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -1.21
-> Orientation: N-in
----------------------------------------------------------------------
"tem12" 3176
6 26 #t 1.80104
364 384 #f 0.740625
1172 1192 #f 0.60625
3042 3062 #f 0.834375
************************************
*TOPPREDM with prokaryotic function*
************************************
tem12.___inter___ is a single sequence
Using hydrophobicity file: /bio_software/2D/toppredm/lib/Engelman-Steitz.scale
Using cyt/ext file: /bio_software/2D/toppredm/lib/Cyt-Ext.prok
Using sequence file: tem12.___inter___
(1 sequences)
MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTI
GEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTKQ
EVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLT
DGHSKDGLALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNL
ENFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQDSADIIFLIDGS
NNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYS
TKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVL
VLISAGPSSDEIRYGVVALKQASVFSFGLGAQAASRAELQHIATDDNLVF
TVPEFRSFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNKRDIVFLV
DGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFN
THPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIP
KLLVLITGGKSLDEISQPAQELKRSSIMAFAIGNKGADQAELEEIAFDSS
LVFIPAEFRAAPLQGMLPGLLAPLRTLSGTPEVHSNKRDIIFLLDGSANV
GKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS
DILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLL
TAGQSEDSYLQAANALTRAGILTFCVGASQANKAELEQIAFNPSLVYLMD
DFSSLPALPQQLIQPLTTYVSGGVEEVPLAQPESKRDILFLFDGSANLVG
QFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSKPEIL
NLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG
RSSDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPAFILAAESLP
KIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEGVRSGFPLLKEF
VQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNKQDVVNAVRQLTL
LGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGDDVRN
PSVVVKRGGAVPIGIGIGNADITEMQTISFIPDFAVAIPTFRQLGTVQQV
ISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPEFQY
VRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSKDEVQNAVQ
RLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD
EVVVPAVELKQFGVAPFTIARNADQEELVKISLSPEYVFSVSTFRELPSL
EQKLLTPITTLTSEQIQKLLASTRYPPPAVESDAADIVFLIDSSEGVRPD
GFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVL
DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG
KSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFR
ELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINF
RRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKR
QIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVI
TGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVG
NVQELSELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQN
VFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEA
FDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIH
FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGF
MYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIG
PKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFP
GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD
VGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGF
GRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGP
RGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGDDGRDG
VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPG
IVGQKGRPGYPGPAGPRGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFP
TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY
NNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFK
RVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQ
LINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFG
SWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLD
MSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVD
FLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQ
QLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDK
STELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVK
FGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTII
NQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPA
AVRPPAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMLREVQVFEIT
ENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAG
QTYHVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVST
EPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENK
FGSQKECEKVCAPVLAKPGVISVMGT
(p)rokaryotic or (e)ukaryotic: p
Charge-pair energy: 0
Length of full window (odd number!): 21
Length of core window (odd number!): 11
Number of residues to add to each end of helix: 1
Critical length: 60
Upper cutoff for candidates: 1
Lower cutoff for candidates: 0.6
Total of 8 structures are to be tested
Candidate membrane-spanning segments:
Helix Begin End Score Certainity
1 6 26 1.801 Certain
2 364 384 0.741 Putative
3 1172 1192 0.606 Putative
4 3042 3062 0.834 Putative
----------------------------------------------------------------------
Structure 1
Transmembrane segments included in this structure:
Segment 1 2 3 4
Loop length 5 337 787 1849 114
K+R profile 3.00 + +
+ +
CYT-EXT prof - 1.15 0.57
1.13 1.05
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.46
-> Orientation: N-in
----------------------------------------------------------------------
Structure 2
Transmembrane segments included in this structure:
Segment 1 3 4
Loop length 5 1145 1849 114
K+R profile 3.00 +
+ +
CYT-EXT prof - 1.05
1.22 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.74
-> Orientation: N-in
----------------------------------------------------------------------
Structure 3
Transmembrane segments included in this structure:
Segment 1 2 4
Loop length 5 337 2657 114
K+R profile 3.00 +
+ +
CYT-EXT prof - 1.15
1.13 0.57
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.21
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.56
-> Orientation: N-in
----------------------------------------------------------------------
Structure 4
Transmembrane segments included in this structure:
Segment 1 4
Loop length 5 3015 114
K+R profile 3.00 +
+
CYT-EXT prof - 0.57
1.20
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.59
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.63
-> Orientation: N-in
----------------------------------------------------------------------
Structure 5
Transmembrane segments included in this structure:
Segment 1 2 3
Loop length 5 337 787 1984
K+R profile 3.00 +
+ +
CYT-EXT prof - 1.15
1.13 1.08
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.01
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -1.06
-> Orientation: N-in
----------------------------------------------------------------------
Structure 6
Transmembrane segments included in this structure:
Segment 1 3
Loop length 5 1145 1984
K+R profile 3.00 +
+
CYT-EXT prof - 1.08
1.22
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.02
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -0.14
-> Orientation: N-in
----------------------------------------------------------------------
Structure 7
Transmembrane segments included in this structure:
Segment 1 2
Loop length 5 337 2792
K+R profile 3.00 +
+
CYT-EXT prof - 1.16
1.13
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 0.35
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: 0.03
-> Orientation: N-out
----------------------------------------------------------------------
Structure 8
Transmembrane segments included in this structure:
Segment 1
Loop length 5 3150
K+R profile 3.00
+
CYT-EXT prof -
1.21
For CYT-EXT profile neg. values indicate cytoplasmic preference.
K+R difference: 3.00
Tm probability: 1.00
-> Orientation: N-in
Charge-difference over N-terminal Tm (+-15 residues): 4.00
(NEG-POS)/(NEG+POS): -1.0000
NEG: 0.0000
POS: 3.0000
-> Orientation: N-in
CYT-EXT difference: -1.21
-> Orientation: N-in
----------------------------------------------------------------------
"tem12" 3176
6 26 #t 1.80104
364 384 #f 0.740625
1172 1192 #f 0.60625
3042 3062 #f 0.834375
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
NOW EXECUTING: /bio_software/1D/stat/saps/saps-stroh/SAPS.SSPA/saps /people/maria/tem12.___saps___
SAPS. Version of April 11, 1996.
Date run: Fri Nov 10 09:56:07 2000
File: /people/maria/tem12.___saps___
ID tem12gi|3127926|emb|CAA36267.1|
DE collagen type VI, alpha 3 chain [Homo sapiens]
number of residues: 3176; molecular weight: 343.6 kdal
1 MRKHRHLPLV AVFCLFLSGF PTTHAQQQQA DVKNGAAADI IFLVDSSWTI GEEHFQLVRE
61 FLYDVVKSLA VGENDFHFAL VQFNGNPHTE FLLNTYRTKQ EVLSHISNMS YIGGTNQTGK
121 GLEYIMQSHL TKAAGSRAGD GVPQVIVVLT DGHSKDGLAL PSAELKSADV NVFAIGVEDA
181 DEGALKEIAS EPLNMHMFNL ENFTSLHDIV GNLVSCVHSS VSPERAGDTE TLKDITAQDS
241 ADIIFLIDGS NNTGSVNFAV ILDFLVNLLE KLPIGTQQIR VGVVQFSDEP RTMFSLDTYS
301 TKAQVLGAVK ALGFAGGELA NIGLALDFVV ENHFTRAGGS RVEEGVPQVL VLISAGPSSD
361 EIRYGVVALK QASVFSFGLG AQAASRAELQ HIATDDNLVF TVPEFRSFGD LQEKLLPYIV
421 GVAQRHIVLK PPTIVTQVIE VNKRDIVFLV DGSSALGLAN FNAIRDFIAK VIQRLEIGQD
481 LIQVAVAQYA DTVRPEFYFN THPTKREVIT AVRKMKPLDG SALYTGSALD FVRNNLFTSS
541 AGYRAAEGIP KLLVLITGGK SLDEISQPAQ ELKRSSIMAF AIGNKGADQA ELEEIAFDSS
601 LVFIPAEFRA APLQGMLPGL LAPLRTLSGT PEVHSNKRDI IFLLDGSANV GKTNFPYVRD
661 FVMNLVNSLD IGNDNIRVGL VQFSDTPVTE FSLNTYQTKS DILGHLRQLQ LQGGSGLNTG
721 SALSYVYANH FTEAGGSRIR EHVPQLLLLL TAGQSEDSYL QAANALTRAG ILTFCVGASQ
781 ANKAELEQIA FNPSLVYLMD DFSSLPALPQ QLIQPLTTYV SGGVEEVPLA QPESKRDILF
841 LFDGSANLVG QFPVVRDFLY KIIDELNVKP EGTRIAVAQY SDDVKVESRF DEHQSKPEIL
901 NLVKRMKIKT GKALNLGYAL DYAQRYIFVK SAGSRIEDGV LQFLVLLVAG RSSDRVDGPA
961 SNLKQSGVVP FIFQAKNADP AELEQIVLSP AFILAAESLP KIGDLHPQIV NLLKSVHNGA
1021 PAPVSGEKDV VFLLDGSEGV RSGFPLLKEF VQRVVESLDV GQDRVRVAVV QYSDRTRPEF
1081 YLNSYMNKQD VVNAVRQLTL LGGPTPNTGA ALEFVLRNIL VSSAGSRITE GVPQLLIVLT
1141 ADRSGDDVRN PSVVVKRGGA VPIGIGIGNA DITEMQTISF IPDFAVAIPT FRQLGTVQQV
1201 ISERVTQLTR EELSRLQPVL QPLPSPGVGG KRDVVFLIDG SQSAGPEFQY VRTLIERLVD
1261 YLDVGFDTTR VAVIQFSDDP KAEFLLNAHS SKDEVQNAVQ RLRPKGGRQI NVGNALEYVS
1321 RNIFKRPLGS RIEEGVPQFL VLISSGKSDD EVVVPAVELK QFGVAPFTIA RNADQEELVK
1381 ISLSPEYVFS VSTFRELPSL EQKLLTPITT LTSEQIQKLL ASTRYPPPAV ESDAADIVFL
1441 IDSSEGVRPD GFAHIRDFVS RIVRRLNIGP SKVRVGVVQF SNDVFPEFYL KTYRSQAPVL
1501 DAIRRLRLRG GSPLNTGKAL EFVARNLFVK SAGSRIEDGV PQHLVLVLGG KSQDDVSRFA
1561 QVIRSSGIVS LGVGDRNIDR TELQTITNDP RLVFTVREFR ELPNIEERIM NSFGPSAATP
1621 APPGVDTPPP SRPEKKKADI VFLLDGSINF RRDSFQEVLR FVSEIVDTVY EDGDSIQVGL
1681 VQYNSDPTDE FFLKDFSTKR QIIDAINKVV YKGGRHANTK VGLEHLRVNH FVPEAGSRLD
1741 QRVPQIAFVI TGGKSVEDAQ DVSLALTQRG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG
1801 NVQELSELSE QVLETLHDAM HETLCPGVTD AAKACNLDVI LGFDGSRDQN VFVAQKGFES
1861 KVDAILNRIS QMHRVSCSGG RSPTVRVSVV ANTPSGPVEA FDFDEYQPEM LEKFRNMRSQ
1921 HPYVLTEDTL KVYLNKFRQS SPDSVKVVIH FTDGADGDLA DLHRASENLR QEGVRALILV
1981 GLERVVNLER LMHLEFGRGF MYDRPLRLNL LDLDYELAEQ LDNIAEKACC GVPCKCSGQR
2041 GDRGPIGSIG PKGIPGEDGY RGYPGDEGGP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP
2101 GEKGEVGEIG LDGLDGEDGD KGLPGSSGEK GNPGRRGDKG PRGEKGERGD VGIRGDPGNP
2161 GQDSQERGPK GETGDLGPMG VPGRDGVPGG PGETGKNGGF GRRGPPGAKG NKGGPGQPGF
2221 EGEQGTRGAQ GPAGPAGPPG LIGEQGISGP RGSGGARGAP GERGRTGPLG RKGEPGEPGP
2281 KGGIGNPGPR GETGDDGRDG VGSEGRRGKK GERGFPGYPG PKGNPGEPGL NGTTGPKGIR
2341 GRRGNSGPPG IVGQKGRPGY PGPAGPRGNR GDSIDQCALI QSIKDKCPCC YGPLECPVFP
2401 TELAFALDTS EGVNQDTFGR MRDVVLSIVN VLTIAESNCP TGARVAVVTY NNEVTTEIRF
2461 ADSKRKSVLL DKIKNLQVAL TSKQQSLETA MSFVARNTFK RVRNGFLMRK VAVFFSNTPT
2521 RASPQLREAV LKLSDAGITP LFLTRQEDRQ LINALQINNT AVGHALVLPA GRDLTDFLEN
2581 VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR AAGSDVDIDM AFILDSAETT TLFQFNEMKK
2641 YIAYLVRQLD MSPDPKASQH FARVAVVQHA PSESVDNASM PPVKVEFSLT DYGSKEKLVD
2701 FLSRGMTQLQ GTRALGSAIE YTIENVFESA PNPRDLKIVV LMLTGEVPEQ QLEEAQRVIL
2761 QAKCKGYFFV VLGIGRKVNI KEVYTFASEP NDVFFKLVDK STELNEEPLM RFGRLLPSFV
2821 SSENAFYLSP DIRKQCDWFQ GDQPTKNLVK FGHKQVNVPN NVTSSPTSNP VTTTKPVTTT
2881 KPVTTTTKPV TTTTKPVTII NQPSVKPAAA KPAPAKPVAA KPVATKTATV RPPVAVKPAT
2941 AAKPVAAKPA AVRPPAAAAK PVATKPEVPR PQAAKPAATK PATTKPVVKM LREVQVFEIT
3001 ENSAKLHWER PEPPGPYFYD LTVTSAHDQS LVLKQNLTVT DRVIGGLLAG QTYHVAVVCY
3061 LRSQVRATYH GSFSTKKSQP PPPQPARSAS SSTINLMVST EPLALTETDI CKLPKDEGTC
3121 RDFILKWYYD PNTKSCARFW YGGCGGNENK FGSQKECEKV CAPVLAKPGV ISVMGT
--------------------------------------------------------------------------------
COMPOSITIONAL ANALYSIS (extremes relative to: swp23s)
A :233( 7.3%); C : 30( 0.9%); D :179( 5.6%); E :183( 5.8%); F :149( 4.7%)
G :303( 9.5%); H : 45( 1.4%); I :153( 4.8%); K :157( 4.9%); L :283( 8.9%)
M : 35( 1.1%); N :130( 4.1%); P :211( 6.6%); Q :147( 4.6%); R :190( 6.0%)
S :216( 6.8%); T :169( 5.3%); V :295( 9.3%); W : 6( 0.2%); Y : 62( 2.0%)
KR : 347 ( 10.9%); ED : 362 ( 11.4%); AGP : 747 ( 23.5%);
KRED : 709 ( 22.3%); KR-ED : -15 ( -0.5%); FIKMNY : 686 ( 21.6%);
LVIFM : 915 ( 28.8%); ST : 385 ( 12.1%).
--------------------------------------------------------------------------------
CHARGE DISTRIBUTIONAL ANALYSIS
1 0++0+00000 0000000000 0000000000 -0+00000-0 0000-00000 0--00000+-
61 000-00+000 00-0-00000 000000000- 000000+0+0 -000000000 000000000+
121 00-0000000 0+0000+00- 0000000000 -000+-0000 000-0+00-0 0000000--0
181 --000+-000 -000000000 -000000-00 0000000000 000-+00-0- 00+-0000-0
241 0-00000-00 0000000000 00-000000- +00000000+ 0000000--0 +00000-000
301 0+0000000+ 0000000-00 000000-000 -0000+0000 +0--000000 000000000-
361 -0+000000+ 0000000000 00000+0-00 0000--0000 000-0+000- 00-+000000
421 0000+0000+ 000000000- 00++-00000 -000000000 0000+-000+ 000+0-000-
481 0000000000 -00+0-0000 0000++-000 00++0+00-0 000000000- 00+0000000
541 000+00-000 +00000000+ 00--000000 -0++000000 0000+00-00 -0--000-00
601 000000-0+0 0000000000 0000+00000 0-0000++-0 0000-00000 0+000000+-
661 000000000- 000-00+000 0000-0000- 00000000+0 -00000+000 0000000000
721 0000000000 00-0000+0+ -000000000 00000--000 0000000+00 0000000000
781 00+0-0-000 000000000- -000000000 0000000000 0000--0000 00-0++-000
841 00-0000000 00000+-000 +00--000+0 -00+000000 0--0+0-0+0 --000+0-00
901 000++0+0+0 0+00000000 -000+0000+ 0000+0--00 0000000000 +00-+0-000
961 000+000000 00000+00-0 0-0-000000 000000-000 +00-000000 000+000000
1021 000000-+-0 0000-00-00 +000000+-0 00+00-00-0 00-+0+0000 000-+0+0-0
1081 0000000+0- 00000+0000 0000000000 00-000+000 000000+00- 0000000000
1141 0-+00--0+0 00000++000 0000000000 -00-000000 00-0000000 0+00000000
1201 00-+00000+ --00+00000 0000000000 ++-00000-0 000000-000 0+000-+00-
1261 00-000-00+ 0000000--0 +0-0000000 0+--000000 +0+0+00+00 000000-000
1321 +000++0000 +0--000000 000000+0-- -000000-0+ 0000000000 +00-0--00+
1381 00000-0000 0000+-0000 -0+0000000 000-000+00 000+000000 -0-00-0000
1441 0-00-00+0- 00000+-000 +00++00000 0+0+000000 00-000-000 +00+000000
1501 -00++0+0+0 0000000+00 -000+0000+ 0000+0--00 0000000000 +00--00+00
1561 000+000000 0000-+00-+ 0-000000-0 +00000+-0+ -0000--+00 0000000000
1621 00000-0000 0+0-+++0-0 0000-00000 ++-000-00+ 000-00-000 --0-000000
1681 00000-00-- 000+-000++ 000-000+00 0+00+0000+ 000-00+000 000-000+0-
1741 0+00000000 000+00--00 -0000000+0 0+000000+0 0-0--00+00 0000000+00
1801 000-00-00- 000-000-00 0-0000000- 00+0000-00 000-00+-00 00000+00-0
1861 +0-0000+00 000+000000 +0000+0000 00000000-0 0-0--000-0 0-+0+00+00
1921 000000--00 +0000+0+00 00-00+0000 00-00-0-00 -00+00-00+ 0-00+00000
1981 00-+0000-+ 0000-00+00 00-+00+000 0-0-0-00-0 0-000-+000 0000+0000+
2041 0-+0000000 0+0000--00 +0000--000 0-+0000000 0000000000 +00+00+000
2101 0-+0-00-00 0-00-0--0- +0000000-+ 0000++0-+0 0+0-+0-+0- 000+0-0000
2161 00-00-+00+ 0-00-00000 000+-00000 00-00+0000 0++00000+0 0+00000000
2221 -0-000+000 0000000000 000-000000 +00000+000 0-+0+00000 ++0-00-000
2281 +00000000+ 0-00--0+-0 000-0++0++ 0-+0000000 0+0000-000 000000+00+
2341 0++0000000 0000+0+000 000000+00+ 0-00-00000 000+-+0000 0000-00000
2401 0-00000-00 -0000-000+ 0+-0000000 00000-0000 000+000000 00-000-0+0
2461 0-0+++0000 -+0+000000 00+0000-00 00000+000+ +0+00000++ 0000000000
2521 +00000+-00 0+00-00000 0000+0--+0 0000000000 0000000000 0+-00-00-0
2581 00000000-0 000-000000 00+000+-++ 0000-0-0-0 0000-00-00 000000-0++
2641 000000+00- 000-0+0000 00+0000000 00-00-0000 000+0-0000 -000+-+00-
2701 000+000000 00+000000- 000-000-00 000+-0+000 00000-00-0 00--00+000
2761 00+0+00000 00000++000 +-000000-0 0-000+00-+ 00-00--000 +00+000000
2821 00-0000000 -0++00-000 0-000+000+ 000+000000 0000000000 0000+00000
2881 +000000+00 0000+00000 00000+0000 +0000+0000 +0000+0000 +00000+000
2941 00+0000+00 00+000000+ 0000+0-00+ 0000+0000+ 0000+000+0 0+-0000-00
3001 -000+000-+ 0-0000000- 0000000-00 000+000000 -+00000000 0000000000
3061 0+000+0000 00000++000 000000+000 0000000000 -00000-0-0 0+00+--000
3121 +-000+000- 000+000+00 0000000-0+ 0000+-0-+0 000000+000 000000
A. CHARGE CLUSTERS.
Positive charge clusters (cmin = 11/30 or 15/45 or 18/60): none
Negative charge clusters (cmin = 12/30 or 15/45 or 19/60): none
Mixed charge clusters (cmin = 18/30 or 24/45 or 29/60): none
B. HIGH SCORING (UN)CHARGED SEGMENTS.
There are no high scoring positive charge segments.
There are no high scoring negative charge segments.
There are no high scoring mixed charge segments.
There are no high scoring uncharged segments.
C. CHARGE RUNS AND PATTERNS.
pattern (+)| (-)| (*)| (0)| (+0)| (-0)| (*0)|(+00)|(-00)|(*00)| (H.)|(H..)|
lmin0 6 | 6 | 8 | 44 | 11 | 11 | 15 | 13 | 14 | 18 | 7 | 9 |
lmin1 7 | 7 | 10 | 53 | 13 | 13 | 18 | 16 | 16 | 22 | 8 | 11 |
lmin2 8 | 9 | 12 | 59 | 15 | 15 | 20 | 18 | 19 | 24 | 10 | 12 |
(Significance level: 0.010000; Minimal displayed length: 6)
(*00) 27(0,0,2); at 1951-1977: FTDGADGDLADLHRASENLRQEGVRAL
(3. quartile) 00-00-0-00-00+00-00+0-00+00
Run count statistics:
+ runs >= 4: 0
- runs >= 4: 0
* runs >= 6: 0
0 runs >= 29: 0
--------------------------------------------------------------------------------
DISTRIBUTION OF OTHER AMINO ACID TYPES
1. HIGH SCORING SEGMENTS.
There are no high scoring hydrophobic segments.
There are no high scoring transmembrane segments.
2. SPACINGS OF C.
H2N-13-C-201-C-558-C-1049-C-9-C-41-C-151-C-C-3-C-1-C-50-C-289-C-9-C-1-C-C-5-C-42-C-144-C-2-C-3-C-5-C-166-C-71-C-222-C-51-C-8-C-15-C-7-C-12-C-3-C-15-COOH
2*. SPACINGS OF C and H. (additional deluxe function for ALEX)
H2N-3-H-1-H-7-C-9-H-29-H-22-H-10-H-16-H-23-H-23-H-42-H-10-H-8-C-1-H-114-H-57-H-34-H-75-H-131-H-70-H-24-H-11-H-32-C-117-H-112-H-10-H-271-H-164-H-88-H-172-H-8-H-4-H-86-H-3-H-3-C-9-C-37-H-3-C-43-H-28-H-12-H-29-H-35-C-C-3-C-1-C-50-C-289-C-9-C-1-C-C-5-C-42-C-124-H-19-C-H-1-C-3-C-5-C-62-H-8-H-94-C-71-C-16-H-153-H-19-H-26-H-4-C-10-H-40-C-8-C-15-C-7-C-12-C-3-C-15-COOH
--------------------------------------------------------------------------------
REPETITIVE STRUCTURES.
A. SEPARATED, TANDEM, AND PERIODIC REPEATS: amino acid alphabet.
Repeat core block length: 6
Aligned matching blocks:
[ 241- 248] ADIIFLID
[1435-1442] ADIVFLID
with superset:
[ 38- 43] ADIIFL
[ 241- 246] ADIIFL
[1435-1440] ADIVFL
[1638-1643] ADIVFL
______________________________
[ 339- 354] GSRVEEGVPQVLVLIS
[1329-1344] GSRIEEGVPQFLVLIS
with superset:
[ 343- 351] EEGVPQVLV
[1333-1341] EEGVPQFLV
[1537-1545] EDGVPQHLV
______________________________
[ 443- 455] KRDIVFLVDGS_SA
[1231-1244] KRDVVFLIDGSQSA
with superset:
[ 447- 453] VFLVDGS
[1031-1037] VFLLDGS
[1235-1241] VFLIDGS
[1641-1647] VFLLDGS
______________________________
[ 556- 561] ITGGKS
[1750-1755] ITGGKS
______________________________
[ 590- 602] AELEEIAFDSSLV
[ 784- 796] AELEQIAFNPSLV
with superset:
[ 590- 595] AELEEI
[ 784- 789] AELEQI
[ 981- 986] AELEQI
______________________________
[ 637- 651] KRDIIFLLDGSAN_VG
[ 835- 850] KRDILFLFDGSANLVG
______________________________
[ 928- 940]-( -10)-[ 931- 940]
[ ]--------[1123-1134]
[1528-1540]-( -10)-[1531-1542]
[ 928- 940] FVKSAGSRIEDGV
[1528-1540] FVKSAGSRIEDGV
[ 931- 940] SAGSRIEDGV
[1123-1134] SAGSRITEGVPQ
[1531-1542] SAGSRIEDGVPQ
______________________________
[2275-2282] PGEPGPKG
[2316-2323] PGYPGPKG
with superset:
[2275-2280] PGEPGP
[2316-2321] PGYPGP
[2358-2363] PGYPGP
______________________________
[2443-2448] ARVAVV
[2662-2667] ARVAVV
______________________________
[2915-2929] AKPVAAKPVATKTAT
[2974-2983] AKPAATKP_AT
with superset:
[2915-2922] AKPVAAKP
[2942-2949] AKPVAAKP
[2959-2966] AKPVATKP
[2974-2981] AKPAATKP
______________________________
Simple tandem repeat:
[2870-2875] PV_TTTK
[2876-2881] PV_TTTK
[2882-2888] PVTTTTK
[2889-2895] PVTTTTK
[2896-2898] PVT
B. SEPARATED AND TANDEM REPEATS: 11-letter reduced alphabet.
(i= LVIF; += KR; -= ED; s= AG; o= ST; n= NQ; a= YW; p= P; h= H; m= M; c= C)
Repeat core block length: 10
Aligned matching blocks:
[ 37- 47] ss-iiiii-oo
[1434-1444] ss-iiiii-oo
______________________________
[ 242- 254] -iiiii-sonnos
[1233-1244] -iiiii-so_nos
______________________________
[ 332- 361] nhio+ssso+i--sipniiiiiosspoo--
[ 729- 757] nhio-ssso+i+-hipniiiiioss_no--
______________________________
[ 334- 363] io+ssso+i--sipniiiiiosspoo--i+
[1121-1149] io_osso+io-sipniiiiios-+os--i+
with superset:
[ 351- 361] iiiosspoo--
[ 554- 564] iiioss+oi--
[1137-1147] iiios-+os--
[1341-1351] iiioos+o---
[1545-1555] iiiiss+on--
[1748-1758] iiioss+oi--
______________________________
[ 440- 468] -i__n++-iiiii-soosisisninsi+-ii
[ 632- 662] -ihon++-iiiii-sosnis+onipai+-ii
______________________________
[ 520- 521]-( 3)-[ 525- 537]-( 3)-[ 541- 542]-( 4)-[ 547- 583]
[1511-1512]-( 3)-[1516-1528]-( 3)-[1532-1533]-( 4)-[1538-1572]
[ 525- 537] ososi-ii+nnii
[1516-1528] os+si-iis+nii
[ 547- 583] -sip+iiiiioss+oi--ionpsn-i++ooimsisis
[1538-1572] -sipnhiiiiiss+on--io+isnii+oosi__iois
______________________________
[ 637- 650] ++-iiiii-sosni
[ 835- 848] ++-iiiii-sosni
[1637-1650] +s-iiiii-soini
with superset:
[ 443- 453] ++-iiiii-so
[ 637- 647] ++-iiiii-so
[ 835- 845] ++-iiiii-so
[1231-1241] ++-iiiii-so
[1637-1647] +s-iiiii-so
______________________________
[ 637- 662] ++-iiiii-sosnis+onipai+-ii
[ 835- 859] ++-iiiii-sosni_isnipii+-ii
______________________________
[ 675- 689] ni+isiinio-opio
[2525-2539] ni+-sii+io-ssio
with superset:
[ 278- 288] ni+isiinio-
[ 675- 685] ni+isiinio-
[2525-2535] ni+-sii+io-
______________________________
[1112-1113]-( 3)-[1117-1147]
[1316-1317]-( 3)-[1321-1350]
[1117-1147] +niiioosso+io-sipniiiiios-+os--
[1321-1350] +nii++piso+i--sipniiiiioos+o_--
with superset:
[ 927- 940] iii+osso+i--si
[1119-1132] iiioosso+io-si
[1323-1336] ii++piso+i--si
[1527-1540] iii+osso+i--si
and:
[1119-1138] iiioosso+io-sipni_iii
[1323-1342] ii++piso+i--sipniiii
[1527-1547] iii+osso+i--sipnhiiii
--------------------------------------------------------------------------------
MULTIPLETS.
A. AMINO ACID ALPHABET.
1. Total number of amino acid multiplets: 191 (Expected range: 150--231)
2. Histogram of spacings between consecutive amino acid multiplets:
(1-5) 54 (6-10) 47 (11-20) 41 (>=21) 50
3. Clusters of amino acid multiplets (cmin = 11/30 or 14/45 or 17/60): none
4. Long amino acid multiplets (>= 5; Letter/Length/Position):
L/5/746
B. CHARGE ALPHABET.
1. Total number of charge multiplets: 70 (Expected range: 45-- 96)
30 +plets (f+: 10.9%), 40 -plets (f-: 11.4%)
Total number of charge altplets: 73 (Critical number: 104)
2. Histogram of spacings between consecutive charge multiplets:
(1-5) 3 (6-10) 10 (11-20)
12 (>=21) 46
--------------------------------------------------------------------------------
PERIODICITY ANALYSIS.
A. AMINO ACID ALPHABET (core: 4; !-core: 6)
Location Period Element Copies Core Errors
26- 29 1 Q 4 4 0
746- 750 1 L 5 5 0
970-1009 10 P......... 4 4 0
1055-1074 5 V.... 4 4 0
1870-1893 6 S..... 4 4 0
2038-2163 3 G.. 42 42 ! 0
2168-2302 3 G.. 45 45 ! 0
2302-2373 3 G.. 24 24 ! 0
2867-2896 6 TT.... 5 5 /0/1/././././
2882-2909 7 PVT.... 4 4 /0/1/1/././././
2884-2887 1 T 4 4 0
2891-2894 1 T 4 4 0
2906-2930 5 KP... 5 5 /0/1/./././
2941-2960 5 AA.P. 4 4 /0/1/./1/./
2956-2959 1 A 4 4 0
2961-2990 5 P...K 6 6 ! /0/./././2/
3080-3083 1 P 4 4 0
B. CHARGE ALPHABET ({+= KR; -= ED; 0}; core: 5; !-core: 7)
and HYDROPHOBICITY ALPHABET ({*= KRED; i= LVIF; 0}; core: 6; !-core:11)
Location Period Element Copies Core Errors
256- 275 2 i. 9 7 1
258- 299 7 i.....0 6 6 /0/./././././2/
309- 338 5 i0..0 6 6 /0/2/././2/
402- 464 9 i......0. 7 7 /0/././././././2/./
552- 611 10 i...0..00. 6 6 /0/./././1/././1/2/./
940- 948 1 i 8 6 1
1030-1089 10 i.0....... 6 6 /0/./2/./././././././
1641-1682 7 i0...*0 6 6 /0/1/./././2/1/
1773-1820 8 i.0.0.0. 6 6 /0/./2/./1/./1/./
1808-1831 4 i0*0 6 6 /0/1/1/0/
1979-1996 3 i.. 6 6 0
1986-2015 5 i.... 6 6 0
2094-2210 9 *00.0..0. 12 7 /1/4/4/./2/././2/./
2136-2150 3 +0- 5 5 /0/0/1/
2738-2743 1 i 6 6 0
2906-2935 5 +0000 6 6 0
2960-2989 5 +0000 6 6 /0/0/1/0/1/
--------------------------------------------------------------------------------
SPACING ANALYSIS.
Location (Quartile) Spacing Rank P-value Interpretation
48-2602 (2.) W(2554)W 1 of 7 0.0004 large 1. maximal spacing
216- 775 (1.) C( 559)C 2 of 31 0.0010 large 2. maximal spacing
775-1825 (2.) C(1050)C 1 of 31 0.0002 large 1. maximal spacing
1363-1446 (2.) G( 83)G 2 of 304 0.0017 large 2. maximal spacing
1993-2564 (3.) H( 571)H 1 of 46 0.0057 large maximal spacing
2021-2111 (3.) L( 90)L 2 of 284 0.0012 large 2. maximal spacing
2028-2208 (3.) A( 180)A 1 of 234 0.0002 large 1. maximal spacing
2185-2295 (3.) D( 110)D 2 of 180 0.0257 large 2. maximal spacing
2187-2301 (3.) V( 114)V 1 of 296 0.0036 large maximal spacing
2259-2364 (3.) A( 105)A 2 of 234 0.0017 large 2. maximal spacing
2602-2838 (4.) W( 236)W 2 of 7 0.9991 small 2. maximal spacing
2842-2967 (4.) -( 125)- 1 of 363 0.0001 large 1. maximal spacing
2842-3020 (4.) D( 178)D 1 of 180 0.0043 large 1. maximal spacing
2848-2991 (4.) L( 143)L 1 of 284 0.0003 large 1. maximal spacing
2852-3015 (4.) G( 163)G 1 of 304 0.0000 large 1. maximal spacing
3041-3101 (4.) -( 60)- 2 of 363 0.0215 large 2. maximal spacing
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Pfam (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/Pfam
Sequence file: tem12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
vwa von Willebrand factor type A domain 1909.0 0 11
Collagen Collagen triple helix repeat (20 copi 193.5 3.4e-54 5
Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhi 94.1 2e-29 1
FARP FMRFamide related peptide family 11.1 19 1
fn3 Fibronectin type III domain 2.4 1.3 1
formyl_transf Formyl transferase 2.0 21 1
Ribosomal_L5 Ribosomal protein L5 1.9 78 1
UNG Uracil-DNA glycosylase 0.7 59 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 0.5 77 1
GST Glutathione S-transferases. 0.4 43 1
catalase Catalase -0.3 53 1
Leptin Leptin -0.8 86 1
A2M_N Alpha-2-macroglobulin family N-termin -0.9 32 1
Rhabd_nucleocap Rhabdovirus nucleocapsid protein -1.4 89 1
PDEase 3'5'-cyclic nucleotide phosphodiester -1.5 61 1
Seedstore_11s 11S plant seed storage protein -1.5 97 1
COLFI Fibrillar collagen C-terminal domain -1.8 83 1
actin Actin -2.8 91 1
RecR RecR protein -8.0 17 1
Tryp_mucin Mucin-like glycoprotein -24.8 53 1
ATP-synt_F ATP synthase (F/14-kDa) subunit -30.4 12 1
DAGKc Diacylglycerol kinase catalytic domai -41.7 52 1
Peptidase_S24 Peptidase family S24 -48.7 33 1
Bac_globin Protozoan/cyanobacterial globin -56.9 5.2 1
ThiF_family ThiF family -62.4 92 1
Luteo_Vpg Luteovirus putative VPg genome linked -66.4 60 1
DUF58 Protein of unknown function DUF58 -70.6 57 1
HypB_UreG HypB/UreG nucleotide-binding domain -79.0 45 1
GFO_IDH_MocA Oxidoreductase family -85.2 65 1
PRAI N-(5'phosphoribosyl)anthranilate (PRA -87.6 18 1
Keratin_B2 Keratin, high sulfur B2 protein -94.0 44 1
adh_short short chain dehydrogenase -100.5 59 1
US22 US22 like -120.1 58 1
UPF0023 Uncharacterized protein family UPF002 -129.6 76 1
CorA CorA-like Mg2+ transporter protein -134.3 4 1
Fibrillarin Fibrillarin -137.0 74 1
PYC_OADA Conserved carboxylase domain -138.4 96 1
Phage_F Capsid protein (F protein) -165.1 65 1
HrcA HrcA protein -173.0 19 1
DUF102 Protein of unknown function DUF102 -243.7 46 1
Dwarfin Dwarfin -266.5 71 1
Como_LCP Large coat protein -290.2 78 1
Peptidase_M17 Cytosol aminopeptidase family -294.3 95 1
Worm_family_8 Putative membrane protein -306.3 68 1
TrehaloseP_syn Trehalose-6-phosphate synthase domain -317.6 50 1
Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzy -333.5 83 1
4A_glucanotrans 4-alpha-glucanotransferase -336.4 49 1
Carn_acyltransf Carnitate acyltransferase -376.0 48 1
MCM MCM2/3/5 family -376.7 10 1
Adenine_deam Adenine deaminase -398.9 77 1
adeno_100 Late 100kD protein -510.7 29 1
Patched Patched family -606.7 96 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
A2M_N 1/1 1 18 [. 1 20 [. -0.9 32
Seedstore_11s 1/1 1 29 [. 1 29 [. -1.5 97
DAGKc 1/1 78 210 .. 1 159 [] -41.7 52
vwa 1/11 39 213 .. 1 200 [] 200.2 3.3e-56
Fibrillarin 1/1 47 215 .. 1 232 [] -137.0 74
vwa 2/11 242 415 .. 1 200 [] 192.6 6e-54
Rhabd_nucleocap 1/1 423 438 .. 1 16 [. -1.4 89
DUF102 1/1 207 448 .. 1 354 [] -243.7 46
Como_LCP 1/1 192 465 .. 1 365 [] -290.2 78
Cys_Met_Meta_PP 1/1 351 563 .. 1 428 [] -333.5 83
Adenine_deam 1/1 189 584 .. 1 577 [] -398.9 77
vwa 3/11 445 620 .. 1 200 [] 213.5 3.2e-60
adeno_100 1/1 297 724 .. 1 625 [] -510.7 29
catalase 1/1 784 796 .. 304 316 .. -0.3 53
vwa 4/11 639 812 .. 1 200 [] 227.9 1.5e-64
vwa 5/11 837 1009 .. 1 200 [] 176.0 6.2e-49
GST 1/1 1029 1058 .. 182 207 .] 0.4 43
Bac_globin 1/1 1061 1151 .. 1 118 [] -56.9 5.2
vwa 6/11 1029 1201 .. 1 200 [] 198.1 1.4e-55
COLFI 1/1 1324 1331 .. 1 9 [. -1.8 83
HypB_UreG 1/1 1250 1332 .. 1 147 [] -79.0 45
vwa 7/11 1233 1404 .. 1 200 [] 207.4 2.2e-58
PYC_OADA 1/1 1286 1426 .. 1 225 [] -138.4 96
Peptidase_M17 1/1 1213 1455 .. 1 427 [] -294.3 95
DUF58 1/1 1351 1511 .. 1 192 [] -70.6 57
PRAI 1/1 1405 1562 .. 1 216 [] -87.6 18
vwa 8/11 1436 1609 .. 1 200 [] 223.7 2.7e-63
ATP-synt_F 1/1 1572 1638 .. 1 106 [] -30.4 12
PDEase 1/1 1648 1666 .. 95 113 .. -1.5 61
UPF0023 1/1 1516 1711 .. 1 256 [] -129.6 76
Ribosomal_L5 1/1 1718 1740 .. 1 31 [. 1.9 78
vwa 9/11 1639 1812 .. 1 200 [] 201.4 1.4e-56
GFO_IDH_MocA 1/1 1676 1867 .. 1 264 [] -85.2 65
Phage_F 1/1 1467 1892 .. 1 430 [] -165.1 65
adh_short 1/1 1745 1901 .. 1 203 [] -100.5 59
ThiF_family 1/1 1769 1905 .. 1 151 [] -62.4 92
UNG 1/1 1937 1949 .. 10 22 .. 0.7 59
Collagen 1/5 2038 2097 .. 1 60 [] 48.4 1.6e-10
Collagen 2/5 2104 2163 .. 1 60 [] 51.6 1.7e-11
Collagen 3/5 2174 2233 .. 1 60 [] 37.6 2.9e-07
Collagen 4/5 2234 2293 .. 1 60 [] 35.3 1.4e-06
Collagen 5/5 2314 2373 .. 1 60 [] 52.6 8.6e-12
HrcA 1/1 1738 2406 .. 1 343 [] -173.0 19
Carn_acyltransf 1/1 1396 2430 .. 1 679 [] -376.0 48
Tryp_mucin 1/1 2013 2500 .. 1 169 [] -24.8 53
Patched 1/1 1302 2522 .. 1 957 [] -606.7 96
formyl_transf 1/1 2509 2529 .. 1 21 [. 2.0 21
vwa 10/11 2402 2581 .. 1 200 [] 87.5 2.7e-22
actin 1/1 2570 2583 .. 184 197 .. -2.8 91
Dwarfin 1/1 1791 2591 .. 1 652 [] -266.5 71
zf-C3HC4 1/1 2584 2594 .. 1 17 [. 0.5 77
RecR 1/1 2565 2609 .. 1 42 [] -8.0 17
Worm_family_8 1/1 1986 2627 .. 1 404 [] -306.3 68
4A_glucanotrans 1/1 1220 2630 .. 1 585 [] -336.4 49
Leptin 1/1 2645 2655 .. 136 146 .] -0.8 86
US22 1/1 2400 2661 .. 1 321 [] -120.1 58
TrehaloseP_syn 1/1 1983 2757 .. 1 513 [] -317.6 50
MCM 1/1 1456 2764 .. 1 615 [] -376.7 10
CorA 1/1 1893 2768 .. 1 324 [] -134.3 4
Peptidase_S24 1/1 2664 2776 .. 1 132 [] -48.7 33
vwa 11/11 2619 2809 .. 1 200 [] 44.9 1.8e-09
FARP 1/1 2804 2814 .. 1 11 [] 11.1 19
Keratin_B2 1/1 2862 2972 .. 1 177 [] -94.0 44
fn3 1/1 2986 3068 .. 1 84 [] 2.4 1.3
Luteo_Vpg 1/1 3058 3121 .. 1 105 [] -66.4 60
Kunitz_BPTI 1/1 3111 3161 .. 1 62 [] 94.1 2e-29
Alignments of top-scoring domains:
A2M_N: domain 1 of 1, from 1 to 18: score -0.9, E = 32
*->MgkdrllqlcLwllLllLlf<-*
M+k+r l L+ + +l+l+
tem12gi|31 1 MRKHRH--LPLVAVFCLFLS 18
Seedstore_11s: domain 1 of 1, from 1 to 29: score -1.5, E = 97
*->MAkklasl.lvfsLcLlll.fngclAqqeQQ<-*
M k ++l+lv+ +cL+l++f + Aqq QQ
tem12gi|31 1 M-RKHRHLpLVAVFCLFLSgFPTTHAQQ-QQ 29
DAGKc: domain 1 of 1, from 78 to 210: score -41.7, E = 52
*->pllVfvNPkSGggqgekelaseskllqkfrelLnprqVfdltk.tgg
+lV +N+++ ++ + + ++e+L+++ +++t+
tem12gi|31 78 FALVQFNGNPHTEFLL-------NTYRTKQEVLSHISNMSYIGgTNQ 117
pavglel.frdlpdfleqsdqkgddrvlvcGGDGTvgwVlnaldklelpl
+ +gle+ + + + GDG + ++ d + ++
tem12gi|31 118 TGKGLEYiMQSHLTK----------AAGSRAGDGVPQVIVVLTDGHSKDG 157
qcqvedrefpkPPvavlPlGTGNdLarvLgwgggydga.qlinekllkil
+P a l N +a +g + +ga + i++ +l++
tem12gi|31 158 L---------ALPSAELKSADVNVFA--IGVEDADEGAlKEIASEPLNMH 196
gdaleeadtvmldrW<-*
+ +l e+ t +d +
tem12gi|31 197 MFNL-ENFTSLHDIV 210
vwa: domain 1 of 11, from 39 to 213: score 200.2, E = 3.3e-56
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di+FL+D+S+ ig+ F++v++F+++vv +L vg+ + +++
tem12gi|31 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGE-ND-----FHFA 79
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQ+++n++tE f+ln+y++k evl+ ++++ y+gg + Tg++L
tem12gi|31 80 LVQFNGNPHTE--FLLNTYRTKQEVLSHISNMS----YIGGTNQTGKGLE 123
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
y + + t+a+GsR a g+p+v+VvlTDG s d+ + +++
tem12gi|31 124 YIMQSHLTKAAGSR----AGDGVPQVIVVLTDGHSKDG------LALPSA 163
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
elk a+v+vfaiGv +ad + L+eIAs+p ++h f++++f++L+++
tem12gi|31 164 ELKS-ADVNVFAIGVEDAD---EGALKEIASEPLnMHMFNLENFTSLHDI 209
qelL<-*
+ L
tem12gi|31 210 VGNL 213
Fibrillarin: domain 1 of 1, from 47 to 215: score -137.0, E = 74
*->kkvivephrnleGVfigkGkedaLvTKnlvpGesVYgEKrisveete
+i e h +l f+ + K+l++Ge + +++ ++
tem12gi|31 47 SWTIGEEHFQLVREFLYDV------VKSLAVGENDFHFALVQFNGNP 87
kiEYRvWNPfrSKLAAaIigGlkeipIkpGsKVLYLGAAsGTTvSHVsDi
E+ + N +r K ++ ++++ Y G+ + T
tem12gi|31 88 HTEF-LLNTYRTK--QEVLSHISNMS--------YIGGTNQT-------- 118
vgPeGiVYAVEFShRsgRdLlemakkRtNviPIieDArkPqkYrmlVgmV
g +G+ Y + Sh L +a R +D V++V
tem12gi|31 119 -G-KGLEY-IMQSH-----LTKAAGSRA------GDG---------VPQV 145
DvIFaDVAQPdQArIlalNAkaFLkngGhvvISIKAncIDsTaepevVFa
v+ D ++G ++ S ++ D+ + V
tem12gi|31 146 IVVLTDGH----------------SKDGLALPSAELKSADVNVFAIGVED 179
revekLkeegfKpve..qltlEPfErDHavvVGvyrg<-*
++ Lke p+ + +lE f H + VG
tem12gi|31 180 ADEGALKEIASEPLNmhMFNLENFTSLHDI-VGNLVS 215
vwa: domain 2 of 11, from 242 to 415: score 192.6, E = 6e-54
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di+FL+DGS++ gs nF+ ++dF++++ e+L +g ++ +rVg
tem12gi|31 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGT-QQ-----IRVG 282
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+vQ+Sd++rt f+l++y++k+ vl a++++ + gg+ +n+g AL+
tem12gi|31 283 VVQFSDEPRTM--FSLDTYSTKAQVLGAVKALG---FAGGELANIGLALD 327
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+vv+n+ft+a GsR eeg+p+vlV++++G+s+d ir +
tem12gi|31 328 FVVENHFTRAGGSR----VEEGVPQVLVLISAGPSSDE------IRYGVV 367
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+lk+ a+v f++G+ a + +eL+ IA+++ + vf v f++ +lq
tem12gi|31 368 ALKQ-ASVFSFGLGAQAASR---AELQHIATDD-NLVFTVPEFRSFGDLQ 412
elL<-*
e+L
tem12gi|31 413 EKL 415
Rhabd_nucleocap: domain 1 of 1, from 423 to 438: score -1.4, E = 89
*->nnqvvsvklPanedPv<-*
+ +++k+P+++++v
tem12gi|31 423 AQRHIVLKPPTIVTQV 438
DUF102: domain 1 of 1, from 207 to 448: score -243.7, E = 46
*->lkkrkslFvcVlGnTETslIpGIsvAGatPeliKyTP..iADaEllf
+ + l cV ++ AG t l +T++++AD +l+
tem12gi|31 207 HDIVGNLVSCVHSSVSPE------RAGDTETLKDITAqdSADIIFLI 247
ygKpltldtiPltpleGeAAPTPAvITkAaveLkn...iPvlvvdsGlfv
g +G+ + AvI +v L+++ +i ++ G
tem12gi|31 248 DG---------SNN-TGS--VNFAVILDFLVNLLEklpIGTQQIRVG--- 282
kPkiPyInidekpgrdiregrAlplaeveel.yerGl.llGkqLsklHAa
++ + +p ++ + + ++l+ ++l+ G +L+ +
tem12gi|31 283 -----VVQFSDEPRTMFSLDTYST--KAQVLgAVKALgFAGGELANI--- 322
elLVvGESvPGGTTTAlGVLlALGyDAeGkVSSSsPeNPheLKrkVVreg
+L +D VV+
tem12gi|31 323 ---------------------GLALDF------------------VVENH 333
LeraGIEkGdlksepfeVleAVGDPMipvVAGlAlgssesnkpViLAGGT
+ raG s + e + ++ V+ ++++ s + i G
tem12gi|31 334 FTRAG------GSRVEEGVP------QVLVL---ISAGPS-SDEIRYG-- 365
QMlAVlALikalgkqqNevldfsrlvIATTkfVaeDasgDlkgiaeqiGd
V AL +a v++f + + A + + l ia +
tem12gi|31 366 ----VVALKQA------SVFSFGLGAQAA-------SRAELQHIATDD-N 397
islLvsdldFskSkypGLreYekGfVKEGVGAGGmavlAllagNiepEkv
v+++ ++ L+e + + VG +a ++ + +p+ v
tem12gi|31 398 LVFTVPEFR----SFGDLQEKLLPYI---VG---VAQRHIVLK--PPTIV 435
rEkIENklyerlle<-*
IE + ++
tem12gi|31 436 TQVIE-VNKRDIVF 448
Como_LCP: domain 1 of 1, from 192 to 465: score -290.2, E = 78
*->EtdLFkLSLDDtsspsgslLdtklaqskvliPKnmvGGTvLrsayLa
++ +L ++ s+ + + + + + + + +G T + + a
tem12gi|31 192 PLNMHMFNLENFTSLHD-IVGNLVSCVHSSVSPERAGDTETLKDITA 237
dvLskssfRatvaLqRTHvItGkIkvvatinvaeNTGigLAiafNSGirG
++ + L+ + tG+ + +N
tem12gi|31 238 -----QDSADIIFLIDGSNNTGSVNFAVILDFLVN------------LLE 270
aNastDiYttcSQDailWNPACeKavefsFNPNPCgDaWslefLrrtkfh
+ ++ Q+ + +v+fs P + sl +tk+
tem12gi|31 271 K------LPIGTQQIRV------GVVQFSDEPR---TMFSLDT-YSTKAQ 304
svcvvtCVtGWtatPltDvaitldWyisr..........eiCvPkiytvl
++v + G ++ l + + ld ++++ ++ ++++ e+ vP + +
tem12gi|31 305 VLGAVKAL-GFAGGELANIGLALDFVVENhftraggsrvEEGVPQVLVLI 353
dpqpafmlNRWMGkLsFPQGservvkrMPLsIGGGAGakkaiLmNmpNAv
+++p+ R G + +Q +v ++ L G + a a L
tem12gi|31 354 SAGPSSDEIRY-GVVALKQA---SVFSFGL---GAQAASRAEL------- 389
lSLwRYFrGD..LvFEvtKMSSPYIkaTvsFfiAFGdLsddvgNMQIlEs
+ + D++LvF Tv f FGdL ++
tem12gi|31 390 ----QHIATDdnLVF------------TVPEFRSFGDLQEKLL------- 416
FPHklvqFsevqertRtitFskeEFltAWSTQVrpattlrgDGCPYLYAl
P + + q +++ + + + V+ ++ +
tem12gi|31 417 -PYIV---GVAQRHI-VLKPPT---IVTQVIEVNKRDI----------VF 448
vHRDSvsSTieGdFvlGVkLlliknicaiG<-*
+ D++s +l++ n++ai
tem12gi|31 449 LV-DGSS------------ALGLANFNAIR 465
Cys_Met_Meta_PP: domain 1 of 1, from 351 to 563: score -333.5, E = 83
*->aTlavHaGqrpdeddqtGAvvvPIYqtSTYkfdtveegaalfagehg
+++ aG+++de + +G vv++ q+S + f g
tem12gi|31 351 --VLISAGPSSDE-IRYG--VVALKQASVFSFG------------LG 380
GeyeYSRsgNPTrdaLEeriAaLEgGeaalAfaSGmAAifaallaLLkaG
+ +AA+ a l+ + +
tem12gi|31 381 A----------------------------------QAAS-RAELQHIATD 395
DhvVatddlYGGTyrlfekvlkrnfGievtfVDtsdldaleaAikPnTKa
D++V t +++ l ek+l+ G+ +++ + kP T
tem12gi|31 396 DNLVFTVPEFRSFGDLQEKLLPYIVGVAQRHIVL----------KPPT-- 433
VyvETPtNPllkvvDIeaiakiAkkhg..gvlvvVDNTFasPGyLqrPLe
i+ + ++++++++ VD a + ++++++
tem12gi|31 434 ------------------IVTQVIEVNkrDIVFLVDGSSALGLANFNAIR 465
LGADiVvHSATKYigGHsDVvgGvvvvngreelakrlaflqqFePeGYHG
D ++ v+ r e+++ q
tem12gi|31 466 ------------------DFIAKVIQ---RLEIGQD--LIQ--------- 483
lFievqGnlAYilrvRtellnatGavlsPfDAwLllRGLKTLgLRmerhq
tem12gi|31 - -------------------------------------------------- -
eNAlklAefLekHPkVekVyYPGLpSHPqHelAkkQmkGfGGGgmlSFel
++A++ + V P f + F +
tem12gi|31 484 ---VAVAQY--AD-TVR----P----------------EF-Y-----FNT 501
kggldaakrreaakkfldnlk.LftlAeSLGGvESLishPAtMTHasipp
+++ ++ + ++k+L A + G + ++ + +++ a++
tem12gi|31 502 H--PTK----REVITAVRKMKpLDGSALYTGSALDFVRNNLFTSSAGY-- 543
EeReaaGitdgLiRlSVGiEDvdDLiaDLeqALe<-*
R+a Gi++ L+ + G L+
tem12gi|31 544 --RAAEGIPKLLVLITGG------------KSLD 563
Adenine_deam: domain 1 of 1, from 189 to 584: score -398.9, E = 77
*->ikNakIlDvyngeiikgnIaIaggrIagVglndeisgrieKiaEeik
+ + + +n e + I g +++V + s + + E +k
tem12gi|31 189 ASEPLNMHMFNLENFTSLHDIVGNLVSCVH--SSVSPERAGDTETLK 233
tIDaegkyivPGFIDaHiHIESSmltPseFAkaVlphGtttvVsDPHEIA
I a + + +ID+ S ++FA v+ D +++
tem12gi|31 234 DITAQDSADIIFLIDG-----SNNTGSVNFA----------VILD--FLV 266
NVsGkdGilfMLneAkktplkfYfmvP..SCVPAtsepfEtsGAvltaed
N L+ + +++ ++v + S+ P t f ++ +a +
tem12gi|31 267 N---------LLEKLPIGTQQIRVGVVqfSDEPRT--MFSLDTYSTKAQV 305
ikellelddVlgLAEmMdyPgVisgDdemLkKieaArkqnKriDGHaPGL
+ + l +++E + i +A+ +++ H+ +
tem12gi|31 306 LGAVKALG--FAGGELAN--------------IGLAL--DFVVENHFTRA 337
sgkeLnkYisaGissDHEsvslEEaleKLrLGMkvMiREGSaAkNlraLl
+g EE+ + +l
tem12gi|31 338 GGSRV-----------------EEG--------------------VPQVL 350
plinEkgkkncdslmlctDDahpndllsEGhinhiiRrAieeGvdpidvA
li+ a p + i +Gv++++
tem12gi|31 351 VLIS----------------AGPSSDE------------IRYGVVALK-- 370
yqmasiNpAeyYGldtyLGliaPGrdADl..vileDlrnfkVkkVlvkGr
A + + G+ a++r A l+++ ++D + f+V + G
tem12gi|31 371 -------QASVFSFGL--GAQAASR-AELqhIATDDNLVFTVPEFRSFGD 410
pvredglallkrfnktqkaPwkklnvskkpvsalnKqDfkmqGiDldegq
+ e l + + + ++ k +++ + ++ nK D+ + +D+ ++
tem12gi|31 411 -LQEKLLPYIVGVAQR-HIVLKPPTIVTQVIE-VNKRDIVFL-VDGSSA- 455
frirVIkvidnqlITeeliisaeveesefqldteeDilkiaVleRHkrsg
+ n++ + i+ v+ l + D+ +aV + ++
tem12gi|31 456 ----LGLANFNAI--RDFIA--KVIQ---RLEIGQDLIQVAVAQ-YADTV 493
kigkGlikGFGlkeGAiAstvaHDSHNIiavGvndedmalAVNrlkeiGG
++ F ++ +H + + AV ++k + G
tem12gi|31 494 RP------EFYFN--------THPT---------KREVITAVRKMKPLDG 520
GLvaaknGevlheLPLPiAGlMSdesaerVaeklekLndkleevlGsrld
a+ G l + l + ++ r ae++ kL ++++ G +ld
tem12gi|31 521 --SALYTGSALDFVR---NNLFTSSAGYRAAEGIPKLLVLITG--GKSLD 563
dPflTLSFLsLpVIPeLKiTdrGLFDVekFqvvd<-*
+ +s p eLK + ++F++ +
tem12gi|31 564 E-------ISQPAQ-ELKRSS-----IMAFAIGN 584
vwa: domain 3 of 11, from 445 to 620: score 213.5, E = 3.2e-60
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL+DGS+ +g +nF++++dF+ +v++rL++g+ d ++V+
tem12gi|31 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQ-DL-----IQVA 485
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
++QY+d vr+E f++n++++k ev+ a++k++ ++ g+++ Tg+AL+
tem12gi|31 486 VAQYADTVRPE--FYFNTHPTKREVITAVRKMK---PLDGSALYTGSALD 530
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+v++nlft ++G R a eg+pk+lV++T+G+s d i ++++
tem12gi|31 531 FVRNNLFTSSAGYR----AAEGIPKLLVLITGGKSLDE------ISQPAQ 570
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfea..Ldt
elk+ +++ faiG ++ad ++eL+eIA++ vf+ f+a +L+
tem12gi|31 571 ELKR-SSIMAFAIGNKGAD---QAELEEIAFDS-SLVFIPAEFRAapLQG 615
lqelL<-*
+ + L
tem12gi|31 616 MLPGL 620
adeno_100: domain 1 of 1, from 297 to 724: score -510.7, E = 29
*->dyldpfadvLlkHLeRQAmIlrdALqdaad.adppeklPlSVaelsr
d+++ a + +A + a a +++ +++
tem12gi|31 297 DTYSTKAQ------------VLGAVK-ALGfAGGELA------NIGL 324
al....ErfLFnfPrVPpkrqsnGTCepePRLNFYPpFlvPEaLATYHiF
al+ E++ F+ r r+++G vP +L +
tem12gi|31 325 ALdfvvENH-FT--RAGGSRVEEG---------------VPQVLVL---- 352
FvNqkIPlSCkANRsgsDkllkLksgtsLpLdiPtleevmpkifeGLGsd
+ + +s++ + + l++ ++++ GLG
tem12gi|31 353 -------------------ISAGPSSDEIRYGVVALKQA-SVFSFGLGA- 381
EvraaneLkdaqseNesedSkLV..eLk..gD............npRLav
++++++eL+ ++ ++ +++ +e ++ gD +++ + + R +v
tem12gi|31 382 QAASRAELQHIATD---DNLVFTvpEFRsfGDlqekllpyivgvAQRHIV 428
lKsRclhVthFAYPALnLPPKvmktLme......tLlvk..rAqpnad..
lK PP + + ++e ++++ ++lv +++A ++a +
tem12gi|31 429 LK----------------PPTIVTQVIEvnkrdiVFLVDgsSALGLANfn 462
.........sdeatpedgePvVsDeeLarwlkte..grsdPedtlkalee
++ + + + ++ +V ++ a+ + +e ++P + +++
tem12gi|31 463 airdfiakvIQRLEIGQDLIQVAVAQYADTVRPEfyFNTHPT-KREVITA 511
rRKl..vmaAvlyT.vqLecmqr.fFsspdmiKKlqEsLHYTFrHGYVkL
RK++++ +++lyT+++L + ++F+s + ++ G kL
tem12gi|31 512 VRKMkpLDGSALYTgSALDFVRNnLFTSSAGYRAAE---------GIPKL 552
ackisnveLSnlVTyhGitHENRLgqpvLHttLkgedrrDYvrDtIYLFL
+ i++
tem12gi|31 553 LVLITG-------------------------------------------- 558
vyTWQTAMGvWQQcLeeeNLkeleklLtknrrkLytgfdertiAkaLadi
++ L e+ + +r+ +A a+ +
tem12gi|31 559 ----------------GKSLDEISQPAQELKRS-------SIMAFAIGNK 585
iFPeklLetlqrgALPDFtsQSqlqNFRsFILERSGIlpamcpaLPSDFV
+ Le+++ + +++ F+
tem12gi|31 586 GADQAELEEIAFD----------------------------SSLV---FI 604
PltFkEcPPpLWaHvYLLrLAnFLmnHgDyledveedesgegllecyCrC
P F+ +P ++ + +gll
tem12gi|31 605 PAEFRAAP---------------------LQGML------PGLL------ 621
NLCSPHRmlvhNtaLlnEilaIGTFEiqgPpdkdGkstpktLKLTPgLWt
+P R+l ++ ++ ++ +i d++ ++ k t
tem12gi|31 622 ---APLRTLSGTPEVHS-----NKRDIIFLLDGSANVG-K---------T 653
s.AYLRKFeseDYHpheikfYedqsk....ppkvpLtACVI........T
+ Y R F+ ++ i d+ + + ++++++ V++ + ++ +T
tem12gi|31 654 NfPYVRDFVMNLVNSLDIG--NDNIRvglvQFSDTP---VTefslntyqT 698
qpeILAqLreIkkaREEFLLkKGkGVYLDPqTGEeLn<-*
++ IL Lr+ + L+ G+G +TG L+
tem12gi|31 699 KSDILGHLRQLQ-------LQGGSGL----NTGSALS 724
catalase: domain 1 of 1, from 784 to 796: score -0.3, E = 53
*->AEvEQaAFsPahl<-*
AE EQ+AF+P+ +
tem12gi|31 784 AELEQIAFNPSLV 796
vwa: domain 4 of 11, from 639 to 812: score 227.9, E = 1.5e-64
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di+FLlDGS ++g nF+ v+dFv+++v++Ld+g d+ +rVg
tem12gi|31 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGN-DN-----IRVG 679
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQ+Sd + tE f+ln+yq+k+++l l++++ +gg+g+nTg+AL
tem12gi|31 680 LVQFSDTPVTE--FSLNTYQTKSDILGHLRQLQ---LQGGSGLNTGSALS 724
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
yv+ n+ftea GsRi+ e++p++l++lT+G+s d+ + +++n
tem12gi|31 725 YVYANHFTEAGGSRIR----EHVPQLLLLLTAGQSEDS------YLQAAN 764
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+l + ag+ +f +G+ +a + +eL++IA++p v+ ++df++L+ l
tem12gi|31 765 ALTR-AGILTFCVGASQANK---AELEQIAFNP-SLVYLMDDFSSLPALP 809
elL<-*
++L
tem12gi|31 810 QQL 812
vwa: domain 5 of 11, from 837 to 1009: score 176.0, E = 6.2e-49
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di FL DGS ++ q F+ v+dF++++++ L+v p +r++
tem12gi|31 837 DILFLFDGSANLVGQ-FPVVRDFLYKIIDELNVKP-EG-----TRIA 876
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
++QYSd+v++E ++++q+k e+l +++++ ++g+++n+g AL+
tem12gi|31 877 VAQYSDDVKVE--SRFDEHQSKPEILNLVKRMK---IKTGKALNLGYALD 921
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
y+ r++f +++GsR +e g+ ++lV+l++Grs+d+ ++ ++
tem12gi|31 922 YAQRYIFVKSAGSR----IEDGVLQFLVLLVAGRSSDR------VDGPAS 961
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+lk+ gv++f++ ++nad ++eL++I+ p ++++ ++ + + +l
tem12gi|31 962 NLKQ-SGVVPFIFQAKNAD---PAELEQIVLSP-AFILAAESLPKIGDLH 1006
elL<-*
+++
tem12gi|31 1007 PQI 1009
GST: domain 1 of 1, from 1029 to 1058: score 0.4, E = 43
*->dwlerldldp....eyPnLkawrervaarp<-*
d ++ ld++++ ++++P Lk +++rv ++
tem12gi|31 1029 DVVFLLDGSEgvrsGFPLLKEFVQRVVESL 1058
Bac_globin: domain 1 of 1, from 1061 to 1151: score -56.9, E = 5.2
*->SLYdkLGGqeAveaVVdeFYkrIlADetvatfFsGTDMkkQrnkqva
Gq v ++V + D t f + M kQ +
tem12gi|31 1061 -------GQDRVRVAVVQY-----SDRTRPEFYLNSYMNKQDVVNAV 1095
FLAaaLGGPneYkGrnMkevHkglnPHlsnlHFdaVagHLadaLtelGVp
+LGGP + +G+ + v + +s + +++ te GVp
tem12gi|31 1096 RQLTLLGGPTPNTGAALEFVLRNIL--VSSA---------GSRITE-GVP 1133
aelitealaVvestrgdvlnk<-*
li ++++ dv n
tem12gi|31 1134 QLLIVLTADRSGD---DVRNP 1151
vwa: domain 6 of 11, from 1029 to 1201: score 198.1, E = 1.4e-55
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
D+vFLlDGS+ ++s +F++ K+Fv rvve+Ldvg+ d vrV+
tem12gi|31 1029 DVVFLLDGSEGVRS-GFPLLKEFVQRVVESLDVGQ-DR-----VRVA 1068
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggt.nTgaAL
+vQYSd+ r+E f+ln y nk +v a++++ ++gg+t+nTgaAL
tem12gi|31 1069 VVQYSDRTRPE--FYLNSYMNKQDVVNAVRQLT----LLGGPTpNTGAAL 1112
qyvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl
+v rn+ ++GsR + eg+p++l+vlT++rs dd +r ++
tem12gi|31 1113 EFVLRNILVSSAGSR----ITEGVPQLLIVLTADRSGDD------VRNPS 1152
nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl
++k+ g ++++iG+Gnad e++ I++ p d++ +f++L t+
tem12gi|31 1153 VVVKR-GGAVPIGIGIGNAD---ITEMQTISFIP-DFAVAIPTFRQLGTV 1197
qelL<-*
q+ +
tem12gi|31 1198 QQVI 1201
COLFI: domain 1 of 1, from 1324 to 1331: score -1.8, E = 83
*->lksPeGksr<-*
+k+P+G sr
tem12gi|31 1324 FKRPLG-SR 1331
HypB_UreG: domain 1 of 1, from 1250 to 1332: score -79.0, E = 45
*->pnRarFeahgvlalnlgGsvGSGKTtLLerlieaLkk..delkiAVI
+R tL+erl++ L + d+ ++AVI
tem12gi|31 1250 YVR----------------------TLIERLVDYLDVgfDTTRVAVI 1274
tGDiyTkeD..AerLrktngvLpeGdriiqVeTGgcCHTAIRLDAsMvle
+ + D++Ae+L ++++ +e v
tem12gi|31 1275 ----QFSDDpkAEFLLNAHSSKDE-----------------------VQN 1297
AieeLpergaaynalddldlLfIENVGNLvCPtffdlGedlkvvviSVtE
A+++L ++ + + NVGN +e + ++
tem12gi|31 1298 AVQRLR--------PKGGRQI---NVGN--------ALEYVSRNIFKRPL 1328
GEDk<-*
G ++
tem12gi|31 1329 GSRI 1332
vwa: domain 7 of 11, from 1233 to 1404: score 207.4, E = 2.2e-58
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
D+vFL+DGS+S g+ +F+ v+ +er+v+ Ldvg d+ +rV+
tem12gi|31 1233 DVVFLIDGSQSAGP-EFQYVRTLIERLVDYLDVGF-DT-----TRVA 1272
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
++Q+Sd+++ E f+ln++++kdev a+q++r ++gg + n+g AL
tem12gi|31 1273 VIQFSDDPKAE--FLLNAHSSKDEVQNAVQRLR---PKGGRQINVGNALE 1317
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
yv rn+f++ GsR +eeg+p++lV+++ G+s+d + ++
tem12gi|31 1318 YVSRNIFKRPLGSR----IEEGVPQFLVLISSGKSDDE------VVVPAV 1357
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
elk+ gv +f+i+ +nad +eeL++I+ p ++vf+vs+f++L+ l+
tem12gi|31 1358 ELKQ-FGVAPFTIA-RNAD---QEELVKISLSP-EYVFSVSTFRELPSLE 1401
elL<-*
++L
tem12gi|31 1402 QKL 1404
PYC_OADA: domain 1 of 1, from 1286 to 1426: score -138.4, E = 96
*->VYvHeIPGGQLSNLefQAkelGLgDkfeEVleeyprVnedLGdipkP
l++ +EV ++ r + pk
tem12gi|31 1286 --------------------LNAHSSKDEVQNAVQRLR------PK- 1305
HVTPTSKiVGdlAvfnVlngltaaDvveraryldfPkSVvdflkGlyGrP
G ++nV+n l +y++ ++++k rP
tem12gi|31 1306 --------GG--RQINVGNAL---------EYVS-----RNIFK----RP 1327
PgWGfpEe....LrkkvLkgekdskpitcRPadlLePe...adldaikke
g + Ee+ +++ + g+ + Pa +L+ + + a + +++
tem12gi|31 1328 LG-SRIEEgvpqFLVLISSGKS--DDEVVVPAVELK-QfgvAPFTIARNA 1373
leekgirevtdeDvLsYaLFPkVaeeFlefre.yGdlsvlptraflkgla
+e + + +s +e+ ++ ++++l l+++ l++++
tem12gi|31 1374 DQEEL-VK------ISLS------PEYVFSVStFRELPSLEQKL-LTPIT 1409
igeEgeaGAAptefeVeieggkkTLiiklvaigelp<-*
+ e+ +k l+a p
tem12gi|31 1410 TLTS--------------EQIQK-----LLASTRYP 1426
Peptidase_M17: domain 1 of 1, from 1213 to 1455: score -294.3, E = 95
*->gkagqsvvv.rplsglaskrillvglgtggskklaerqlgenaaail
+ ++q v++++p +g+++kr+ +v+l++g + +a +
tem12gi|31 1213 LSRLQPVLQpLPSPGVGGKRD-VVFLIDG--SQSAGPEFQ------- 1249
kaakrtniaealcsldaleaksksvsfsgdakaaaegaaLasyefsrfds
+++l +++++ +v f ++ +a + +
tem12gi|31 1250 ----------YVRTLIERLVDYLDVGFD------TTRVAVIQFSD----- 1278
ekskpkeKsveesykviavktakeaekaikvaeivaegvnlARdLvNtPa
+pk ++ + a + +e+++a++++ + ++
tem12gi|31 1279 ---DPKAEFLLN-----AHSSKDEVQNAVQRLRPKGGRQI---------- 1310
NilTPavlAeiAeklaskysdkvkveVldeeeleelGMGglLaVnkGSen
N+ ++++++++ ++++ ++ +ee +V
tem12gi|31 1311 NVGNALEYVSR--NIFKRPL---------GSRIEE-------GV------ 1336
pPrlivLeYkgnkkskekvklALVGKGiTFDSGGiSIKtGpaagMdlMKy
P+++vL g k+++e
tem12gi|31 1337 -PQFLVLISSG-KSDDEV-------------------------------- 1352
DMGGAAaVlGaikalAqlklpvnVvavvaltENmiSGtAmrPGDvitamn
+ +++lk +v++ t +a+n
tem12gi|31 1353 -----------VVPAVELKQ----FGVAPFT---------------IARN 1372
GKTVEVlNTDAEGRLVLADaltYAekklnpevIIDvATLTGAcvvALGst
AD ++ l pe+++ v+T
tem12gi|31 1373 -----------------ADQEELVKISLSPEYVFSVST------------ 1393
ytGifsnddeLanelikAaeesGEkvWRmPlhedYkkqlkSSkiADlaNi
f +L+++l++ P++ +q+++ +A +
tem12gi|31 1394 ----FRELPSLEQKLLT------------PITTLTSEQIQK-LLA----S 1422
ggaarggGa..iTAA..lFLkeFvedgekvpWaHL<-*
++ ++++a ++ AA+ FL e++ + +aH+
tem12gi|31 1423 TR--YPPPAveSDAAdiVFLIDSSEGVRPDGFAHI 1455
DUF58: domain 1 of 1, from 1351 to 1511: score -70.6, E = 57
*->vkRGeyelgKVrvrs..gdplgLferersyevpdeiiVlPrvlslkk
e ++ V++ + +++p+ ++++++ +e+ ++i+ P + ++
tem12gi|31 1351 ----EVVVPAVELKQfgVAPFTIARNAD-QEELVKISLSPEYVFSVS 1392
vlsqrlselregdklsksriggpgtE.ifkeiReYqpGDdvrrIdWkASA
+ r++ + e+ ++++i +++E+i k + AS+
tem12gi|31 1393 --TFRELPSLEQK--LLTPITTLTSEqIQKLL---------------AST 1423
RrgklmVkefeperekdvillLDasrsessgdevigkekfeyavslAasL
R+ + V ++ ++d++ l+D+ se ++++ ++ +++++ +++ L
tem12gi|31 1424 RYPPPAV----ESDAADIVFLIDS--SEGVRPDGFAH-IRDFVSRIVRRL 1466
afyalrnGdrvGllifsegepkwvppesGsrhlkkiLktLamlkldke<-
+ ++ rvG++ fs +++ ++ + +++ + +L++++ l+l+ +
tem12gi|31 1467 NIGPSK--VRVGVVQFSNDVFPEFYLKTYRSQAP-VLDAIRRLRLRGG 1511
*
tem12gi|31 - -
PRAI: domain 1 of 1, from 1405 to 1562: score -87.6, E = 18
*->akicgltriedvvaavpagaDavylglifapssprqvfleqaqelrs
+ ++ +++e++++ + y + +++++ +vfl+++ ++
tem12gi|31 1405 LTPITTLTSEQIQKLLASTR---YPPPAVESDAADIVFLIDS---SE 1445
avp.plvqlVGVFvNqpieevlriaqelgLDvvQLHGdEtPpqeyakllp
+v++ + + ++v+ri++ l ++ p
tem12gi|31 1446 GVRpDG--FA-----HIRDFVSRIVRRL------------------NIGP 1470
tgvpvikafwvpasvd.adlarradhvgvdllLlDAqv..sgqGGtGklf
++v+v+ +++++ +v++ +++ + ++++lDA + ++G G +
tem12gi|31 1471 SKVRVG-VVQFSNDVFpEFYLKTYRS---QAPVLDAIRrlRLRG--GSPL 1514
DWslikdllqsdegegeqslpviLAGGLtPeNVveAiqtLGslvgpaGVD
+ + ++++++ l v AG + + + + ++ + V
tem12gi|31 1515 NTGKALEFVARN-------LFVKSAG----SRIEDGVP-----QHLVLV- 1547
VSSGVEtdpGvKDleKiraFvqa<-*
G K+++ +++F q
tem12gi|31 1548 -------L-GGKSQDDVSRFAQV 1562
vwa: domain 8 of 11, from 1436 to 1609: score 223.7, E = 2.7e-63
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL+D+S+ +++++F++++dFv+r+v rL++gp k vrVg
tem12gi|31 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGP-SK-----VRVG 1476
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+vQ+S++v +E f+l++y++ + vl+a++++r +gg+++nTg+AL
tem12gi|31 1477 VVQFSNDVFPE--FYLKTYRSQAPVLDAIRRLR---LRGGSPLNTGKALE 1521
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+v+rnlf +++GsR +e g+p++lV++ +G+sqdd + + ++
tem12gi|31 1522 FVARNLFVKSAGSR----IEDGVPQHLVLVLGGKSQDD------VSRFAQ 1561
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+++ g++ ++G +n+d+ eL+ I ++p + vf v+ f++L++++
tem12gi|31 1562 VIRS-SGIVSLGVGDRNIDR---TELQTITNDP-RLVFTVREFRELPNIE 1606
elL<-*
e +
tem12gi|31 1607 ERI 1609
ATP-synt_F: domain 1 of 1, from 1572 to 1638: score -30.4, E = 12
*->iAViGDeDTvtGFrLAGvGelnknrhevYevvdketieEieeafrel
GvG+ n r+e + +++++ +++ ++re+
tem12gi|31 1572 ----------------GVGDRNIDRTELQTITNDP---RLVFTVREF 1599
leRddvGIIvIteriaekirevierhtesipePtileipgkggafedgyd
e +++i+e+i ++ +++++ ++ pg + +
tem12gi|31 1600 RE-------------LPNIEERIMNSFGPSAA--TPAPPGVD-----TPP 1629
plRElIrra<-*
p+R + ++a
tem12gi|31 1630 PSRPEKKKA 1638
PDEase: domain 1 of 1, from 1648 to 1666: score -1.5, E = 61
*->qNLskkdfrtlrdlvieaI<-*
+N+ ++ f++ +++v+e++
tem12gi|31 1648 INFRRDSFQEVLRFVSEIV 1666
UPF0023: domain 1 of 1, from 1516 to 1711: score -129.6, E = 76
*->kgpdiqvsLtnvaivRlkkaGkrFEiacyknkvadyregqekDlDEv
g + n + k+aG r E + + +v + ++ D v
tem12gi|31 1516 TGKALEFVARNLFV---KSAGSRIEDGVPQHLVLVLGGKSQ---DDV 1556
LqihvVFrnvSKGevAkkEeLskiFGttdvkeiikkqRRLAiilKRAsGG
+V r S G v+ G+ d i + L i
tem12gi|31 1557 SRFAQVIR--SSGIVS--------LGVGDRN--IDR-TELQTITN---DP 1590
evqLaekerelllekvkreiitiVSrktiNPetkkpyPPsvIeKALqELk
+ +e +l + r + + P +p PP v
tem12gi|31 1591 RLVFTVREFRELPNIEERIMNSFG------PSAATPAPPGVD-------- 1626
fslkinkSAkeQaleaikkLvskkvLpIrraKmkikVaIsEPakeAekve
+ + ++ k+ a +++ +L I +
tem12gi|31 1627 -TPPPSRPEKKKA-DIVFLL---------------DGSI----NFRRDSF 1655
kalkllassPkeeekqedgSLivvglI....epgsyreLyalvrketKGH
+ + s + edg i vgl++ +++p + L + tK
tem12gi|31 1656 QEVLRFVSE-IVDTVYEDGDSIQVGLVqynsDPTDEFFLKDFS---TK-- 1699
Grvqvlslkkvve<-*
r + + kvv
tem12gi|31 1700 -RQIIDAINKVVY 1711
Ribosomal_L5: domain 1 of 1, from 1718 to 1740: score 1.9, E = 78
*->NvNTMqvPkPleKiViNmGvGEagddkkiLe<-*
N+ +++ le +++N +v+Eag + L+
tem12gi|31 1718 NT----KVG-LEHLRVNHFVPEAGSR---LD 1740
vwa: domain 9 of 11, from 1639 to 1812: score 201.4, E = 1.4e-56
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFLlDGS + +++ F++v++Fv+++v+ ++++ d+ ++Vg
tem12gi|31 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDG-DS-----IQVG 1679
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQY+++++ E f l+d+++k +++a++k++ y+gg +nT +L
tem12gi|31 1680 LVQYNSDPTDE--FFLKDFSTKRQIIDAINKVV---YKGGRHANTKVGLE 1724
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+++ n+f +++GsR+ ++++p+++ v+T+G+s +d +dv+
tem12gi|31 1725 HLRVNHFVPEAGSRL----DQRVPQIAFVITGGKSVED------AQDVSL 1764
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+l + +gv+vfa+Gv+n+d +ee+ +IAs+ +++f+v++ ++L++l
tem12gi|31 1765 ALTQ-RGVKVFAVGVRNID---SEEVGKIASNS-ATAFRVGNVQELSELS 1809
elL<-*
e++
tem12gi|31 1810 EQV 1812
GFO_IDH_MocA: domain 1 of 1, from 1676 to 1867: score -85.2, E = 65
*->lrvGvvGtGrrlagrrHapallelpdr....iaelvavadrdpaaae
+ vG+v + + + + + + + + + + i ++v + r +a+++
tem12gi|31 1676 IQVGLVQYNSDPTDEFFLKDFSTKR-QiidaINKVVYKGGR-HANTK 1720
avaaefgvpavseydlaaaeelladpeiDaVyiatPnslHfeialaALea
++++v++++ ++ + l + + +++ t
tem12gi|31 1721 VGLEHLRVNHFV-PEA---GSRLDQRVPQIAFVITGG------------- 1753
GKHVlcEKPlAltleeakelvelArekgv.vlqvgfnrRfdpafqtlkel
++e+a+ + ++gv+v+ vg
tem12gi|31 1754 -----------KSVEDAQDVSLALTQRGVkVFAVGV------------RN 1780
iengvlGevrsvsv.dflfdraqresrwrerrdknrDPkakggGalgdlg
i+++++G++ s+s + f+ ++ q s+ +e+
tem12gi|31 1781 IDSEEVGKIASNSAtAFRVGNVQELSELSEQ------------------- 1811
iHdlDllrwLfGeppsvvaalggkgqvaeageyedaavedalmlfanlef
+l +L ++++++ + v +a++ + + ++ +++
tem12gi|31 1812 -----VLETLHDAMHETLC-----PGVTDAAKACNLD-------VILGFD 1844
gsgkvatlessfskslriryiie<-*
gs ++++ + ++ + + + i
tem12gi|31 1845 GSRDQNVFVAQKGFESKVDAILN 1867
Phage_F: domain 1 of 1, from 1467 to 1892: score -165.1, E = 65
*->snvqtsAeRv.phDLsHLaFeaGkiGRLktiswtPviAGDsFElDav
n+ s Rv+++ s +F + + s Pv lDa+
tem12gi|31 1467 -NIGPSKVRVgVVQFSNDVFPEFYLKTYR--SQAPV-------LDAI 1503
GAlRL...sPLRRGLAiDskvDiFtFYiPHRHvYGeqWikFmkDGvnAsP
lRL+++sPL G A++ R ++ + + DGv +
tem12gi|31 1504 RRLRLrggSPLNTGKALEFVA---------RNLFVKSAGSRIEDGVPQHL 1544
LPsvtcssyiDhAaylGtivpstnkiPKfLhqgYLniYnnYFkaPWmpdr
+ +s D + i +s L g ni + + r
tem12gi|31 1545 VLVLGGKSQDDVSRFAQVIRSSGIV---SLGVGDRNIDRTELQTITNDPR 1591
teAnPsnlnedDarygfRvchLKniWtAPLPPetklseemttetssiDim
++ e + + P PP + e + Di+
tem12gi|31 1592 LVFTVREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIV 1641
GLqAAYAkLHte..qERdYFmqRYrDvissFG.....GktsYDaDnRPLL
L + ++ qE F+ D + + G++ + G Y +D
tem12gi|31 1642 FLLDGSINFRRDsfQEVLRFVSEIVDTVYEDGdsiqvGLVQYNSDPTDEF 1691
vmrsefWAsGYDvDGtDqssL.GqFsGRvqqtfkHsvPRFfvPEHGvmmt
++ +f +D + +G + +H fvPE G +
tem12gi|31 1692 FLK-DFSTKRQIIDAINKVVYkGGRHANTKVGLEHLRVNHFVPEAGSRLD 1740
LAl..vRFPPtaelEihYLagKe.aLtYtDiAgDPaLignLPPREislkd
++++ F t + ++ + aLt + + + n+ E+
tem12gi|31 1741 QRVpqIAFVITGGKSVEDAQDVSlALTQRGVKVFAVGVRNIDSEEVGK-- 1788
lFrsgdssaKfKiAEgqWYRtaPdyvafkYhaLeGFPFldelPgtssgde
++s+ f++ q ++v h+ + ++ + +
tem12gi|31 1789 --IASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKACN 1836
LqervLvrhndYDeiFqsvqLlqWnkqvkfn.vsvYRhl.......PttR
L + ++F +++ + + n++s ++ +++++Pt+R
tem12gi|31 1837 LDVILGFDGSRDQNVFVAQKGFESKVDAILNrISQMHRVscsggrsPTVR 1886
Dsimts<-*
s++
tem12gi|31 1887 VSVVAN 1892
adh_short: domain 1 of 1, from 1745 to 1901: score -100.5, E = 59
*->KvaLvTGassGI..GlaiAkrLakeGakVvvadrneeklekGavake
++a v +++ ++ + ++L +G kV++++ ++ + e+ + +
tem12gi|31 1745 QIAFVITGGKSVedAQDVSLALTQRGVKVFAVGVRNIDSEE---VGK 1788
lkelGgndkdralaiqlDvtdeesvaaveqaverlGrlDvLVNNAGgiil
++ + + + +++v ++ + eq++e l + +
tem12gi|31 1789 IASNSA-----TAFRVGNVQELSE--LSEQVLETLHD--------A--M- 1820
lrpgpfaelsrtmeedwdrvidvNltgvflltravlplmamkkrggGrIv
+ l+ + d+ ++Nl + + + +++ v
tem12gi|31 1821 -----HETLC---PGVTDAAKACNLDV-----ILGFD--GSRDQN----V 1851
NiSSvaGrkegglvgvpggsaYsASKaAvigltrsLAlElaphg...IrV
+++ + + + ++ ++ ++ + +++++rV
tem12gi|31 1852 FVAQKGF-------ESKVDAI-------LNRISQMHRVSCSGGRsptVRV 1887
navaP...GgvdTd<-*
++va +++G+v+
tem12gi|31 1888 SVVANtpsGPVEAF 1901
ThiF_family: domain 1 of 1, from 1769 to 1905: score -62.4, E = 92
*->knskVLvvGaGGLGsealknLalaGvGsGGkltivDgDtVelsNLnR
+ kV+ vG + se + +a +++ g + els L+
tem12gi|31 1769 RGVKVFAVGVRNIDSEEVGKIASNSAT---AFRV--GNVQELSELSE 1810
QflfresDvGkMpKaeaAaerLqelNPdvevsvtavnerltpenaeefie
Q+l + D e+++ +++ + ++ +++ + ++ f+
tem12gi|31 1811 QVLETLHDAMH----ETLCPGVTDAAKACN--LDVILGFDGSRDQNVFVA 1854
gfq....ldvVvdalDnfearllingllllldaCvklg.....iplieag
+ + ++++d +++ + ++ ++ ++ g++++ + + a
tem12gi|31 1855 QKGfeskVDAILNRIS------QMH------RVSCSGGrsptvRVSVVAN 1892
tlGlkGqvtvfip<-*
t + ++ f
tem12gi|31 1893 TPSGPVEAFDFDE 1905
UNG: domain 1 of 1, from 1937 to 1949: score 0.7, E = 59
*->lrfcppedVkVVI<-*
+r+++p+ VkVVI
tem12gi|31 1937 FRQSSPDSVKVVI 1949
Collagen: domain 1 of 5, from 2038 to 2097: score 48.4, E = 1.6e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G +G +Gp G Gp+G pG+ G +G pG+ G pGe+GpPG G G+
tem12gi|31 2038 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGF 2084
pGppGapGapGpp<-*
+G pG+ G +G +
tem12gi|31 2085 QGCPGQRGVKGSR 2097
Collagen: domain 2 of 5, from 2104 to 2163: score 51.6, E = 1.7e-11
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G G+ G++G++G pG +G++G+pG +G++Gp G +G+ G
tem12gi|31 2104 GEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 2150
pGppGapGapGpp<-*
G +G pG pG+
tem12gi|31 2151 VGIRGDPGNPGQD 2163
Collagen: domain 3 of 5, from 2174 to 2233: score 37.6, E = 2.9e-07
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G Gp+G pG G pG pG++G +G+ G +GppG++G G pG+pG+
tem12gi|31 2174 GDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGF 2220
pGppGapGapGpp<-*
G++G Ga Gp+
tem12gi|31 2221 EGEQGTRGAQGPA 2233
Collagen: domain 4 of 5, from 2234 to 2293: score 35.3, E = 1.4e-06
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+GppG G++G Gp+G G++GapG++G G+ G+ G pG+pGp
tem12gi|31 2234 GPAGPPGLIGEQGISGPRGSGGARGAPGERGRTGPLGRKGEPGEPGP 2280
pGppGapGapGpp<-*
+G G+pG+ G+
tem12gi|31 2281 KGGIGNPGPRGET 2293
Collagen: domain 5 of 5, from 2314 to 2373: score 52.6, E = 8.6e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G pG pGp+G pG+pG G +Gp+G +G +G++G+pG G++G+pG
tem12gi|31 2314 GFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGY 2360
pGppGapGapGpp<-*
pGp+G+ G G
tem12gi|31 2361 PGPAGPRGNRGDS 2373
HrcA: domain 1 of 1, from 1738 to 2406: score -173.0, E = 19
*->mlteRqlqILraIV.edYiktgePVGSKtLsekhdialSsATIRNeM
+l++R qI +I++ + +++++ V S L+++ +++ +RN
tem12gi|31 1738 RLDQRVPQIAFVITgGKSVEDAQDV-SLALTQRG-VKVFAVGVRNI- 1781
adLEklGyLekpHtSsGRvCPsekGYRyYVDhllevksltetekrqiksq
d E+ G ++++ s +++R V ++ e+++l+e q++++
tem12gi|31 1782 -DSEEVGKIASN---------SATAFR--VGNVQELSELSE----QVLET 1815
lldVkgrqydldkllqkaakiLS.eLtglt.......alV......lgPs
l d ++ +l ++ aak + +++ +++++++++++V +++ + +++
tem12gi|31 1816 LHD--AMHETLCPGVTDAAKACNlDVILGFdgsrdqnVFVaqkgfeSKVD 1863
lekdilkhielipldph.....raLaVlvtdsGhVenriinlpanisesd
+++ + +++ ++ ++++ r+ +V t sG Ve +++++ ++++
tem12gi|31 1864 AILNRISQMHRVSCSGGrsptvRVSVVANTPSGPVEA--FDFDE-YQPEM 1910
Laiisnilndr...LvGvklsEinqqledeleqilqkyglAadfvdvvlq
L++++n +++ L +l+ +++++ + + ++f+d ++
tem12gi|31 1911 LEKFRNMRSQHpyvLTEDTLKVYLNKFRQSSPDSVKVV---IHFTDGADG 1957
illstldesseerlivmGgknlllnqpeFeDieklrqiLsllEdervlle
l ++ ++ e+l ++G ++ + iL lE+ ++l++
tem12gi|31 1958 DLADL--HRASENLRQEG-VR--------------ALILVGLERVVNLER 1990
Llniyednkgd.......................................
L + + + + +++ + + + + + ++ ++ ++ + + + ++++
tem12gi|31 1991 LMHLEFGRGFMydrplrlnlldldyelaeqldniaekaccgvpckcsgqr 2040
..................................................
+++++ ++ ++++ +++++ ++ ++++++++++++++ +++++ ++ +++
tem12gi|31 2041 gdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtqgfqgcpgq 2090
..................................................
++ +++++ ++++++ ++ + ++ ++++++++ +++++++++++++++++
tem12gi|31 2091 rgvkgsrgfpgekgevgeigldgldgedgdkglpgssgekgnpgrrgdkg 2140
..................................................
++++++++++ + ++++++++++++++++++++++ ++ + +++++ +++
tem12gi|31 2141 prgekgergdvgirgdpgnpgqdsqergpkgetgdlgpmgvpgrdgvpgg 2190
..................................................
+++++++++ +++++++ +++++++++++ ++++++++ +++ ++ ++++
tem12gi|31 2191 pgetgknggfgrrgppgakgnkggpgqpgfegeqgtrgaqgpagpagppg 2240
..................................................
++++ ++++++++ ++ +++++++++ ++++++++++++++ ++++++
tem12gi|31 2241 ligeqgisgprgsggargapgergrtgplgrkgepgepgpkggignpgpr 2290
..................................................
++++++++++ +++++++++++++ ++ +++++++++++ ++++++++ +
tem12gi|31 2291 getgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglngttgpkgir 2340
.......................egvtirIGnEndlksmsgcSvItapYs
++++++++++ +++++++ +++ g++ + G s++ c++I + +
tem12gi|31 2341 grrgnsgppgivgqkgrpgypgpAGPRGNRG-----DSIDQCALI-QSIK 2384
igekkplGtlgviGPtRmdYqrviplldlva<-*
+ GP +++ v+p+ ++a
tem12gi|31 2385 DKCP------CCYGPLECP---VFPTELAFA 2406
Carn_acyltransf: domain 1 of 1, from 1396 to 2430: score -376.0, E = 48
*->sLPkLPVPaLedTlkrYLeslkPllsed...................
+LP+L ++ L + l+se+ ++ +++ +++ +++
tem12gi|31 1396 ELPSL--------EQKLLTPITTLTSEQiqkllastrypppavesda 1434
...............eelektkalvreFvepggeGekLQekLleyakktA
+ +++++ +++ +++++++v + v+ + +
tem12gi|31 1435 adivflidssegvrpDGFAHIRDFVSRIVR-------------RLNIGP- 1470
ksnkkhtNwlsewWldyaYlagrdvplpvNSspgshvdvpkqdfpdtAyn
+r v +++ S+ +++p+++ ++ +
tem12gi|31 1471 -------------------SKVR-VGVVQFSN----DVFPEFYLKTY--R 1494
dQlrrAArlihsalsfkraldreeLPEVFHlNPkpdtalGkliflPSLSW
Q+ ++ + l+ + l ++ + +
tem12gi|31 1495 SQAPVLDAIRRLRLRGGSPLNTGKA---------LEFVAR---------- 1525
yGAvlkgtPLCMnQYkrLFntcRvPgkprdeqDsiqlyskskkegkcpeH
+ +++ + s+ e+ p+H
tem12gi|31 1526 ---------------------------N-----LFVKSAGSRIEDGVPQH 1543
vvVicrGqfYkldvldsrnngklLteeeleaqLarIlsdssqeepkeapi
+v + G+ +d+ + +a+++ +s +i
tem12gi|31 1544 LVLVLGGK-----SQDD------------VSRFAQVIRSS--------GI 1568
GaLTsenRdeWakaRqkLlkdgpeNkesLekIesAlFvvCLDddspedfn
+L ++R+ R +L+ + N L v++ +
tem12gi|31 1569 VSLGVGDRNI---DRTELQTI-T-NDPRL--------VFTVREF------ 1599
drD.........................tvpvteeekkttsalsglhggg
r ++ +++ ++ +++ ++ +++ +t p++ ekk
tem12gi|31 1600 -RElpnieerimnsfgpsaatpappgvdTPPPSRPEKK------------ 1636
shqvGdgtNRWfDKsLQlIVtknGkaGlnaEHSpaDGipvlrLmeevytv
K ++ +G+ + ++++ +vlr+ +e++ +
tem12gi|31 1637 -------------K-ADIVFLLDGSINFRRDSFQ----EVLRFVSEIV-D 1667
dkqilksnvn.............eeseevgspsardgsslplPekLeFdi
+ + ++ ++++ + + ++++++e++ + s ++ +i
tem12gi|31 1668 TVYEDG-DSIqvglvqynsdptdEFFLKDFSTKR--------------QI 1702
tpelqseIekAkekfdklisdldlvvlqFtgfGKgfiKkcklSPDaFiQl
+ +++++ k ++++ ++ +l+v +F + + D Q
tem12gi|31 1703 IDAINKVVYKGGRHANTKVGLEHLRVNHFV-------PEAGSRLD---QR 1742
AlQLAyYrglyGkfvpTYEsASTRaFq...............hGRTETiR
+ Q+A+ + Gk v S++ q++ + + ++ +++ E +
tem12gi|31 1743 VPQIAFVI-TGGKSVEDAQDVSLALTQrgvkvfavgvrnidsE---EVGK 1788
SvTteslaf.VqamldekpsaskeeklqLlkkAskkHvqyt...keAstG
+++ + af+V ++ s+ e++l+ l +A+ H +++++ +A+++
tem12gi|31 1789 IASNSATAFrVGNVQE--LSELSEQVLETLHDAM--HETLCpgvTDAAKA 1834
kGvDRHLfgLkllakelgvpsPfS..........................
++l lg++ S++++ +++ +++ + ++ ++
tem12gi|31 1835 ----------CNLDVILGFDG--Srdqnvfvaqkgfeskvdailnrisqm 1872
..................................................
++ + +++++++ + + ++++++ + + ++ +++ ++ ++ +++++
tem12gi|31 1873 hrvscsggrsptvrvsvvantpsgpveafdfdeyqpemlekfrnmrsqhp 1922
..................................................
++++ + ++ +++++++ + + +++ +++ + ++ +++ +++
tem12gi|31 1923 yvltedtlkvylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqe 1972
..................................................
+ + + ++ + ++ + + +++ +++ + + + + + ++ +
tem12gi|31 1973 gvralilvglervvnlerlmhlefgrgfmydrplrlnlldldyelaeqld 2022
..................................................
+ ++ + + + +++++++++ ++ ++++ +++++ ++ +++++++++
tem12gi|31 2023 niaekaccgvpckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpge 2072
..................................................
+++++ +++++ ++ +++++ +++++ ++++++ ++ + ++ ++++++++
tem12gi|31 2073 rgppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkg 2122
..................................................
+++++++++++++++++++++++++++ + +++++++++++++++++++
tem12gi|31 2123 lpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkge 2172
..................................................
+++ ++ + +++++ ++++++++++++ +++++++ +++++++++++ ++
tem12gi|31 2173 tgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgfeg 2222
..................................................
++++++ +++ ++ ++++ ++++ ++++++++ ++ +++++++++ +++
tem12gi|31 2223 eqgtrgaqgpagpagppgligeqgisgprgsggargapgergrtgplgrk 2272
..................................................
+++++++++++ ++++++++++++++++ +++++++++++++ ++ ++++
tem12gi|31 2273 gepgepgpkggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpk 2322
..........................................rprrelle
+++++++ ++++++++ +++++++++++ +++++++ +++ pr+++++
tem12gi|31 2323 gnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypgpaGPRGNRGD 2372
ipAifldpkwllsnsfvlSfqtnstSedqvptetfigggFGPVvdDGyGi
+ ++ +++ ++ d +p+ ++GP +
tem12gi|31 2373 ----------SIDQCALIQ-----SIKDKCPC------CYGP-------L 2394
cYniqGeedivvhissfsScpeTdadrfakyLekaLldmrd<-*
++ ++++ ++ + + + d f+ + ++ l + +
tem12gi|31 2395 ECPVF-PTELAFALDTSE---GVNQDTFGRM-RDVVLSIVN 2430
Tryp_mucin: domain 1 of 1, from 2013 to 2500: score -24.8, E = 53
*->mttCRLLcALLvLaLCCClsvCvtAn.....................
L L +a C v + +++++++++ ++ ++++ ++++
tem12gi|31 2013 -LDYELAEQLDNIAEKACCGVPCKCSgqrgdrgpigsigpkgipged 2058
..................................................
+ ++ ++++++++++++++ +++++ ++ +++++ +++++ ++++++ ++
tem12gi|31 2059 gyrgypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevge 2108
..................................................
+ ++ ++++++++ +++++++++++++++++++++++++++ + +++++
tem12gi|31 2109 igldgldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpg 2158
..................................................
+++++++++++++++++ ++ + +++++ ++++++++++++ +++++++
tem12gi|31 2159 npgqdsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppga 2208
..................................................
+++++++++++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++
tem12gi|31 2209 kgnkggpgqpgfegeqgtrgaqgpagpagppgligeqgisgprgsggarg 2258
..................................................
+++++++++ ++++++++++++++ ++++++++++++++++ +++++++
tem12gi|31 2259 apgergrtgplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrg 2308
..................................................
++++++ ++ +++++++++++ ++++++++ +++++++++++ ++++++
tem12gi|31 2309 kkgergfpgypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrp 2358
.........gkeeaqgtvsggasnntttttttgkspttttttttkpPttt
+ +++ +++g++ g s ++ + + k + +++ P +
tem12gi|31 2359 gypgpagprGNR--------GDSIDQCALIQSIKDKCPCCYGPLECPVFP 2400
ttttwaqsgpiltkkeqekettttttittkttttttttttttttttatEA
t ++a +++ + t + +t +
tem12gi|31 2401 TELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTY 2450
PsdtitttEAPtttttraPsrirkiDGslsssAWvCAPLllAvsALAYtt
ttE r+ + ki + L A s +A t
tem12gi|31 2451 N--NEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNT 2498
lG<-*
tem12gi|31 2499 FK 2500
Patched: domain 1 of 1, from 1302 to 2522: score -606.7, E = 96
*->vlsskilytftpsDirksytergvrsedeplverkFfpgdgkpiarf
++ + + + ++++ y +r ++ + pl +r ++g+p+ f
tem12gi|31 1302 LRPKGGRQINVGNALE--YVSRNIFKR--PLGSR---IEEGVPQ--F 1339
viitakarnsedytrpNiLdikyLnevvqvndfiltnvtipvsgalkkit
+ ++++++++ d+ + v+ +++f ++ +ti +++
tem12gi|31 1340 LVLISSGKSD---------DEVVVPAVE-LKQFGVAPFTIARNA------ 1373
lsfkdlCssfcdincpvnqhyngLdt......................la
d ++ v+ + L ++ + ++ ++ ++ +++ ++
tem12gi|31 1374 -----------DQEELVK---ISLSPeyvfsvstfrelpsleqklltpIT 1409
ilrsnlhnsridlt.YPtmtffgtkiylgpnf...gGVkldpgeNdvekl
l+s+++++ + t+YP+ ++ + ++ + ++++ GV++d+
tem12gi|31 1410 TLTSEQIQKLLASTrYPPPAVESDAADIVFLIdssEGVRPDG-------- 1451
lDsltklklvdtkseegniksvkaivLyyrlkrdpeeveedskeWElsle
+++ v+ iv rl++ p +v + +++ +++
tem12gi|31 1452 --------------FAHIRDFVSRIV--RRLNIGPSKVRVGVVQFSNDVF 1485
.dyleneyksdshievtifsdqvledElvrngltlvPffvvgFaiLvtFs
+++ ++y s + + d ++r l+ ++ g a++++
tem12gi|31 1486 pEFYLKTYRSQ----------APVLDAIRRLRLRGGSPLNTGKALEFV-- 1523
vltsvvlavrrsgslhidwvssKpiLAilgv....ltPlmAivsAfGlLf
+ + + ++ gs+ d v ++L+++g ++++++ ++ + + G+++
tem12gi|31 1524 -ARNLFVKS--AGSRIEDGVPQHLVLVLGGKsqddVSRFAQVIRSSGIVS 1570
wlGfrFnsI.....lcVm..PFLVLGAIGVDDmFLMvhaWqrttrslssr
lG+ +I++++ ++++++P LV + r+ r+l+
tem12gi|31 1571 -LGVGDRNIdrtelQTITndPRLVF-TV-------------REFRELP-- 1603
arKvvkkRmgevlvEaGPSItITSlTnvLSFgIGaiTptPeIqlFCiyta
++R+ + + GPS ++T + G Tp+P
tem12gi|31 1604 ---NIEERI---MNSFGPS----AATPAPP---GVDTPPP---------- 1630
vAiffdfiYQlTFFaAilaiagkyEmkgrhslflriTakavdaaetespk
++E k+ ++fl ++s +
tem12gi|31 1631 ---------------------SRPEKKKADIVFLL----------DGSIN 1649
klkkqrlksrgsakaaPvekegeknSkfseveesles.............
++r s++ + + +e ++ e+ +s+ + + +++++++
tem12gi|31 1650 -------FRRDSFQ-EVLRFVSEIVDTVYEDGDSIQVglvqynsdptdef 1691
......eksssdssksheaeqk..tavvkffln..iYcpfl......lnp
++ ++k + +++++ + ++ a++k+ l++ ++ +f+++ +++l+
tem12gi|31 1692 flkdfsTKRQIIDAINKVVYKGgrHANTKVGLEhlRVNHFVpeagsrLDQ 1741
kvrvcvllvyv.........vYlaiaiYGctnlkegLdPskLllkDSpLv
v ++++++ +++ ++ ++v la++ +G++++ +g + +++
tem12gi|31 1742 RVPQIAFVITGgksvedaqdVSLALTQRGVKVFAVGVRN----IDSEEVG 1787
eilrlrekhvwpyGsqvtVvVNNPPDLtn.penrdrll..emvdeF....
+i+++ + +++G + L+ +e++ + l++ m +++ ++
tem12gi|31 1788 KIASNS-ATAFRVGNVQE--------LSElSEQVLETLhdAMHETLcpgv 1828
......EntpyalGkWEnsTkfWLrdYekFlsssEeinleaseledeeee
++ + n+ +lG +++ rd ++F + +++e ++
tem12gi|31 1829 tdaakaCNLDVILGF--DGS----RDQNVFVAQ------KGFESKVDA-- 1864
idevdpvsvvvkdkqewifydllewFlkspgfshWqgdlvwdn.ktdket
+ + + ++ s+g+s+ + v++n+++
tem12gi|31 1865 --------------ILN-RISQMHRVSCSGGRSPTVRVSVVANtPS---- 1895
teikkFrFttgyHgkdlstwtdRtkllkewRgvAdeypddFNVTVFded.
+ +++F F + ++l+ +R+ +++p V +ed+
tem12gi|31 1896 GPVEAFDFDEY-----------QPEMLEKFRNMRSQHPY-----VLTEDt 1929
..................................................
+ ++ +++++++ + + +++ +++ + ++ +++ ++++ +
tem12gi|31 1930 lkvylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqegvralil 1979
..................................................
+ ++ + ++ + + +++ +++ + + + + + ++ ++ ++
tem12gi|31 1980 vglervvnlerlmhlefgrgfmydrplrlnlldldyelaeqldniaekac 2029
..................................................
+ + + +++++++++ ++ ++++ +++++ ++ ++++++++++++++ +
tem12gi|31 2030 cgvpckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpgergppgvn 2079
..................................................
++++ ++ +++++ +++++ ++++++ ++ + ++ ++++++++ ++++++
tem12gi|31 2080 gtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkglpgssge 2129
..................................................
+++++++++++++++++++++ + ++++++++++++++++++++++ ++
tem12gi|31 2130 kgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkgetgdlgpm 2179
..................................................
+ +++++ ++++++++++++ +++++++ +++++++++++ ++++++++
tem12gi|31 2180 gvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgfegeqgtrga 2229
..................................................
+++ ++ ++++ ++++ ++++++++ ++ +++++++++ ++++++++++
tem12gi|31 2230 qgpagpagppgligeqgisgprgsggargapgergrtgplgrkgepgepg 2279
..................................................
++++ ++++++++++++++++ +++++++++++++ ++ +++++++++++
tem12gi|31 2280 pkggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepg 2329
..................................................
++++++++ +++++++++++ +++++++ +++ +++++++++ ++
tem12gi|31 2330 lngttgpkgirgrrgnsgppgivgqkgrpgypgpagprgnrgdsidqcal 2379
........................afFlDqilsilpttiQsiiwtlicMa
++ +++ + ++ + + +++ af lD+ + + +t++ + ++++
tem12gi|31 2380 iqsikdkcpccygplecpvfptelAFALDTSEGVNQDTFGRMRD--VVLS 2427
vVCflFIpnpitvfvitvsiaSIdiGVfGfLSLWGVdLDPisMitiIMSI
+V +l I+++++ + v++++ + V t+
tem12gi|31 2428 IVNVLTIAESNCPTGARVAVVTYNNEV-----------------TT---- 2456
GFSVDfsAHiaYhFyrskgsesrsikkiplktpdeRvadALealGWPviQ
++F sk+ k+ l + ++++ AL + Q
tem12gi|31 2457 ----------EIRFADSKR-------KSVLLDKIKNLQVALTS-----KQ 2484
AalSTiLcvlvLlFVpsYmvvvFfKTifLVVvlGlLHGLifLPilLslfv
+l T + FV+ + +F + V G +L+ v
tem12gi|31 2485 QSLET-----AMSFVARN---TFKR-----VRNG----------FLMRKV 2511
tssrifggdviirtsnakikkpseq<-*
+ +++++ p +
tem12gi|31 2512 A--------------VFFSNTPTRA 2522
formyl_transf: domain 1 of 1, from 2509 to 2529: score 2.0, E = 21
*->mkiavliSGtgsnlqalldal<-*
+k+av++S t++ ++++l ++
tem12gi|31 2509 RKVAVFFSNTPTRASPQLREA 2529
vwa: domain 10 of 11, from 2402 to 2581: score 87.5, E = 2.7e-22
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
+++F lD S+ + ++ F r++d v +v+ L+++++++ ++++rV+
tem12gi|31 2402 ELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNC--PTGARVA 2446
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+v+Y+++v+tE + ++d+++k+ +l+++++++ ++ ++ + +A+
tem12gi|31 2447 VVTYNNEVTTE--IRFADSKRKSVLLDKIKNLQV--ALTSKQQSLETAMS 2492
yvvrnlft.easGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl
+v+rn f++ ++G ++kv+V+++ +++ +p ++r+++
tem12gi|31 2493 FVARNTFKrVRNGF--------LMRKVAVFFSNTPTRASP----QLREAV 2530
nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl
+l + ag+++ + ++ d ++l + +I + ++ h++ + ++L +
tem12gi|31 2531 LKLSD-AGITPLFLT-RQED-RQLINALQINNTAVGHALVLPAGRDLTDF 2577
qelL<-*
e +
tem12gi|31 2578 LENV 2581
actin: domain 1 of 1, from 2570 to 2583: score -2.8, E = 91
*->AGRDLtdylmkiLt<-*
AGRDLtd+l +Lt
tem12gi|31 2570 AGRDLTDFLENVLT 2583
Dwarfin: domain 1 of 1, from 1791 to 2591: score -266.5, E = 71
*->vkrLlgwkqlgegeliqlnlynletggeeEkwakKAvesLVKKLKkk
++++ + g+ E + + e ++ +L +
tem12gi|31 1791 SNSATAFRV----------------GNVQE--LSELSEQVLETLHDA 1819
kiywgeLeeLltAvtsrgtqpfeatkCVTIpt.RsLDGRLQvahnkkigr
e+L vt +++ +V ++s D va
tem12gi|31 1820 M-----HETLCPGVTDAAKAC---NLDVILGFdGSRDQNVFVAQ------ 1855
KGlPHViYcRlWRWPdLqsknELKhletCqfAfdsksdkqdevCiNPYHY
KG+ + + l R ++ +++ C+ + +
tem12gi|31 1856 KGFESKVDAILNRISQMH------RVS-CSGGRSP---TV---------- 1885
eRVelspgqilppvlvprlsmgePsrrvkpeysqdnekdlseeldaasid
RV +p+++v + e ++pe + +++
tem12gi|31 1886 -RVS-VVA-NTPSGPVEAFDFDE----YQPEMLE-----------KFR-- 1915
pptihmhtdeikelydrykPqndsfsyvnatfasnlppqaphnPger...
++ ++ P +++ + +
tem12gi|31 1916 --NMRSQ-----------HPYVLTED--------------------Tlkv 1932
..................................................
++ +++++++ + + +++ +++ + ++ +++ ++++ + +
tem12gi|31 1933 ylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqegvralilvgl 1982
..................................................
++ + ++ + + +++ +++ + + + + + ++ ++ ++ +
tem12gi|31 1983 ervvnlerlmhlefgrgfmydrplrlnlldldyelaeqldniaekaccgv 2032
..................................................
+ + +++++++++ ++ ++++ +++++ ++ ++++++++++++++ ++++
tem12gi|31 2033 pckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtq 2082
..................................................
+ ++ +++++ +++++ ++++++ ++ + ++ ++++++++ +++++++++
tem12gi|31 2083 gfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkglpgssgekgn 2132
..................................................
++++++++++++++++++ + ++++++++++++++++++++++ ++ + +
tem12gi|31 2133 pgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkgetgdlgpmgvp 2182
..................................................
++++ ++++++++++++ +++++++ +++++++++++ ++++++++ +++
tem12gi|31 2183 grdgvpggpgetgknggfgrrgppgakgnkggpgqpgfegeqgtrgaqgp 2232
..................................................
++ ++++ ++++ ++++++++ ++ +++++++++ +++++++++++++
tem12gi|31 2233 agpagppgligeqgisgprgsggargapgergrtgplgrkgepgepgpkg 2282
..................................................
+ ++++++++++++++++ +++++++++++++ ++ +++++++++++ ++
tem12gi|31 2283 gignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglng 2332
....vSfpasvassttypLnanstpqsnqmnpqdneeplyqgsglnsPas
++++ ++ + ++s ++ ++ q + + g+++Pa+
tem12gi|31 2333 ttgpKGIRGRRGNS-------GPPGIVGQKGR--P--------GYPGPAG 2365
ilasnsefgpnqnyqqqqqqnhyssdcgPNlygfptpypdfhhpfnqQPp
+n+ ++ q + +q ++ d P yg P
tem12gi|31 2366 P-RGNRGDSIDQCALIQ-----SIKDKCPCCYG---------------PL 2394
qppQl.qnhtlgqesdpgspvqqvgntpppSvqrrycswtgeetesptng
+ p + ++ ++ g++++ g v + t+ e+ pt
tem12gi|31 2395 ECPVFpTELAFALDTSEGVNQDTFGRMRDV-VLSIVNVLTIAESNCPT-- 2441
ktveddpndgnqnngflpessplelldksilpldsesveysepnvsnspl
+ ++ v+y +
tem12gi|31 2442 --------------------G-----------ARVAVVTYNNE------- 2453
pefWCsIaYYElntRVGEtfkvssnsvVtVDGftDpsg..gseRfCLGqL
t + ++++++ sv + D + ++ + s q
tem12gi|31 2454 -----------VTTEI-RFADSKRKSV-LLDKIKNLQValTSK-----QQ 2485
sNvnnRnetiektRrhIGkGVqLyyegdGeVwaenlSDspIFVqSpnldy
s + ++ ++ +R + + ++++G + + ++F n+
tem12gi|31 2486 SLE---TAMSFVARNT------FKRVRNGFLMR----KVAVFF--SNTPT 2520
eaGrhpgdtVhKipPgcsLKvFdnrqeFrqlLlqsvnagaaaaAqaAAvA
+a+ ++ +V K+ + F +rqe rql + ++
tem12gi|31 2521 RASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINN----------- 2559
Gyakktsvg..girPAvSlsAaAfegvddLtrdmCtiRiSFVKGWGaeYp
t vg+ + P A+++ +d
tem12gi|31 2560 -----TAVGhaLVLP-------AGRDLTDFLE------------------ 2579
RQdItsTPCWIEvhLnrp<-*
+ + v L +
tem12gi|31 2580 --NVLTC----HVCLDIC 2591
zf-C3HC4: domain 1 of 1, from 2584 to 2594: score 0.5, E = 77
*->CpICltTFdldepkpfk<-*
C++C ld+ ++++
tem12gi|31 2584 CHVC-----LDI-CNID 2594
RecR: domain 1 of 1, from 2565 to 2609: score -8.0, E = 17
*->aevlrLAkaLleAkerlgyCsvCgaltdeev.CnICs..DerRdn<-
a vl + L++ +e++ +C vC +++ +++C s + Rd+
tem12gi|31 2565 ALVLPAGRDLTDFLENVLTCHVCLDICNIDPsCGFGSwrPSFRDR 2609
*
tem12gi|31 - -
Worm_family_8: domain 1 of 1, from 1986 to 2627: score -306.3, E = 68
*->MTisYnldVstssiwtFfkLllRWKGSiWKavwkELivWlflYyiIF
++ +L+
tem12gi|31 1986 --------------VNLERLM-------------------------H 1993
saIYR.faLsksqwdgyqeiFeklvryfdsrldytIPLtFMLGFFVttVv
+ + R+f+++++ + + ++d l
tem12gi|31 1994 LEFGRgFMYDRPL--------RLNLLDLDYELAE---------------- 2019
rRWwkiFdniGwIDniAlavaayirGkdee....................
++dni +++++ v + G+ ++++++ ++ ++++ +++++
tem12gi|31 2020 -----QLDNIA--EKACCGVPCKCSGQ--Rgdrgpigsigpkgipgedgy 2060
..................................................
++ ++++++++++++++ +++++ ++ +++++ +++++ ++++++ ++ +
tem12gi|31 2061 rgypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeig 2110
..................................................
++ ++++++++ +++++++++++++++++++++++++++ + +++++++
tem12gi|31 2111 ldgldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnp 2160
..................................................
+++++++++++++++ ++ + +++++ ++++++++++++ +++++++ ++
tem12gi|31 2161 gqdsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakg 2210
..................................................
+++++++++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ +
tem12gi|31 2211 nkggpgqpgfegeqgtrgaqgpagpagppgligeqgisgprgsggargap 2260
..................................................
++++++++ ++++++++++++++ ++++++++++++++++ +++++++++
tem12gi|31 2261 gergrtgplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrgkk 2310
..................................................
++++ ++ +++++++++++ ++++++++ +++++++++++ +++++++
tem12gi|31 2311 gergfpgypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrpgy 2360
..................................................
+++ +++++++++ ++ ++ +++ + ++ + + +++ +++
tem12gi|31 2361 pgpagprgnrgdsidqcaliqsikdkcpccygplecpvfptelafaldts 2410
........aRiiRRnIiRYlVLsQvLvFRDISmkVRkRFPTldtlVaAGl
++ ++++ R+ RD+ + + ++ t++ +
tem12gi|31 2411 egvnqdtfGRM-----------------RDVVLSI----VNVLTIAESNC 2439
MteeEldklsesik.skysvgqkYWvPInWafsLlQyearkeGlIdsdyl
t + + y+ ++ + +e ++++
tem12gi|31 2440 PT-------GARVAvVTYN------------NEVT-----TEIRFADSKR 2465
ynvlwdeIkeFRtgla....lLsnyDWVPIPLvYPQVVfLA......VRl
+vl+d+Ik+ +++l++++++L + f A+++ ++VR
tem12gi|31 2466 KSVLLDKIKNLQVALTskqqSLETA-----------MSFVArntfkrVRN 2504
YFl...vCLf.....gRQfldsddndnktenyIDlyf.PVPFimTilQFI
Fl ++v++f +++++R ++ ++++ + D ++P ++ + Q
tem12gi|31 2505 GFLmrkVAVFfsntpTRASPQLREAV-LKL--SDAGItP---LFLTRQ-- 2546
FyvGWmKVAEv..LLNPlGEDDDDFEcNyiIDRNLavGlaIVDtlWvkEn
E+++L+N l +N+avG+a V +
tem12gi|31 2547 ---------EDrqLINALQI------------NNTAVGHALVLPA----- 2570
qydrtPdlekDaFwdedaePlystses..F.....akipnnplvGSaanv
++ d+ + +++++ + s +F++ +++++ ++ aa
tem12gi|31 2571 -GRDLTDFLENVLTCHVCLDICNIDPScgFgswrpSFRDRR-----AAGS 2614
kleeddveEvkmvph<-*
+++ d + + ++
tem12gi|31 2615 DVDID--MAFILDSA 2627
4A_glucanotrans: domain 1 of 1, from 1220 to 2630: score -336.4, E = 49
*->lhlfSLpSeyswGIGdFGddAylfiDflkkaGaYqslwQiLPlnptg
l++ LpS+ G+G +d +iD + aG ++++ L +
tem12gi|31 1220 LQP--LPSP---GVGGK-RDVVFLIDGSQSAGPEFQYVRTLIERLVD 1260
pgssskdsPYsSfSafAlNplyIdleaLpefgllpkaqrwfkllveetrl
+ + +f+ + ++ + ++ +ef l + + +
tem12gi|31 1261 YLDV-------GFDTTRVAVIQFSDDPKAEFLLNAHS-------SKDEVQ 1296
eelqelsel..drVDYstiyalKrpaLkkafkvFrssgsledveaFekFr
+ +q+l+++++++++ + ++++ +++ fk+++ s e v++F ++
tem12gi|31 1297 NAVQRLRPKggRQINVGNALEY---VSRNIFKRPLGSRIEEGVPQFLVLI 1343
edek.ksyWLeDYalFnvmAiKehfggipWnaWpdlldkplkkrdas...
+k+ + ++ ++ + ++i na ++l k ++s++
tem12gi|31 1344 SSGKsDDEVVVPAVEL--KQFGVAPFTIARNAD----QEELVKISLSpey 1387
........aleellkkladevdfhsfLQylffsQwaalkayAndklAAAE
+ ++ ++l +l++kl + + +l+ +Q ++l a ++
tem12gi|31 1388 vfsvstfrELPSLEQKLLTPIT------TLTSEQIQKLLASTRY------ 1425
YArkkgIgIkGDLPIyvaedSADVWanpelFklnvegkplvsaGaPPDyF
P v d AD +F+ + s G+ PD F
tem12gi|31 1426 ------------PPPAVESDAADI-----VFLID------SSEGVRPDGF 1452
setGQnWglPiYnWevLekdgYeWWieRLraalkyf.dilRIDHfrGFfr
++ +d ++ R+ + l++ ++ +R +G +
tem12gi|31 1453 ---------------AHIRD----FVSRIVRRLNIGpSKVR----VGVVQ 1479
lWeiPasGmGektAdnGkwvkaPg..........................
+ + ++++ k ++++ + + ++ + +++++ ++++ +
tem12gi|31 1480 F---SN---DVFPEFYLKTYRSQApvldairrlrlrggsplntgkalefv 1523
..................................................
++ ++ +++ +++ +++ +++++++ ++ + ++++ + +
tem12gi|31 1524 arnlfvksagsriedgvpqhlvlvlggksqddvsrfaqvirssgivslgv 1573
..................................................
++++ ++++ ++ +++++ + ++ ++ ++ +++ ++ +++ ++ ++
tem12gi|31 1574 gdrnidrtelqtitndprlvftvrefrelpnieerimnsfgpsaatpapp 1623
..................................................
+ ++++++++++++ + +++ + ++++ ++ + ++ ++ +++
tem12gi|31 1624 gvdtpppsrpekkkadivflldgsinfrrdsfqevlrfvseivdtvyedg 1673
..........................ddlfsilleesgrk..........
++ + + + +++++++ ++ ++++ +++++ +++ k++++ +++ +
tem12gi|31 1674 dsiqvglvqynsdptdefflkdfstkRQIIDAINKVVY-Kggrhantkvg 1722
..................................................
++ + ++ ++ +++ +++ ++ +++++ ++ ++ + ++++ +
tem12gi|31 1723 lehlrvnhfvpeagsrldqrvpqiafvitggksvedaqdvslaltqrgvk 1772
..................................................
+ ++ ++++ ++ +++ + + ++ ++ ++ +++ ++ ++ ++
tem12gi|31 1773 vfavgvrnidseevgkiasnsatafrvgnvqelselseqvletlhdamhe 1822
..................................................
+ ++ ++ + + + + +++++++ +++ +++ + ++ ++
tem12gi|31 1823 tlcpgvtdaakacnldvilgfdgsrdqnvfvaqkgfeskvdailnrisqm 1872
..................................................
++ + +++++++ + + ++++++ + + ++ +++ ++ ++ +++++
tem12gi|31 1873 hrvscsggrsptvrvsvvantpsgpveafdfdeyqpemlekfrnmrsqhp 1922
..................................................
++++ + ++ +++++++ + + +++ +++ + ++ +++ +++
tem12gi|31 1923 yvltedtlkvylnkfrqsspdsvkvvihftdgadgdladlhrasenlrqe 1972
..................................................
+ + + ++ + ++ + + +++ +++ + + + + + ++ +
tem12gi|31 1973 gvralilvglervvnlerlmhlefgrgfmydrplrlnlldldyelaeqld 2022
..................................................
+ ++ + + + +++++++++ ++ ++++ +++++ ++ +++++++++
tem12gi|31 2023 niaekaccgvpckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpge 2072
..................................................
+++++ +++++ ++ +++++ +++++ ++++++ ++ + ++ ++++++++
tem12gi|31 2073 rgppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkg 2122
..................................................
+++++++++++++++++++++++++++ + +++++++++++++++++++
tem12gi|31 2123 lpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqergpkge 2172
..................................................
+++ ++ + +++++ ++++++++++++ +++++++ +++++++++++ ++
tem12gi|31 2173 tgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpgqpgfeg 2222
..................................................
++++++ +++ ++ ++++ ++++ ++++++++ ++ +++++++++ +++
tem12gi|31 2223 eqgtrgaqgpagpagppgligeqgisgprgsggargapgergrtgplgrk 2272
..................................................
+++++++++++ ++++++++++++++++ +++++++++++++ ++ ++++
tem12gi|31 2273 gepgepgpkggignpgprgetgddgrdgvgsegrrgkkgergfpgypgpk 2322
..................................................
+++++++ ++++++++ +++++++++++ +++++++ +++ ++++++++
tem12gi|31 2323 gnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypgpagprgnrgd 2372
..................................................
+ ++ ++ +++ + ++ + + +++ +++++ ++++ ++ +
tem12gi|31 2373 sidqcaliqsikdkcpccygplecpvfptelafaldtsegvnqdtfgrmr 2422
..................................................
+ + + + +++ +++ + + +++ +++ + ++++++ ++
tem12gi|31 2423 dvvlsivnvltiaesncptgarvavvtynnevtteirfadskrksvlldk 2472
................aemliIgEDLGtipeeVrPKHmLKLiVTelreef
++ + ++++++ + m +++ r T +r +
tem12gi|31 2473 iknlqvaltskqqsleTAMSFVA----------R--------NTFKRVRN 2504
gipGmkIlqFAfdsdsenpflPhnyyyeensVvytgTHDndTlrgWweel
g++ k+ F f s + P + + ++ +g + + ++
tem12gi|31 2505 GFLMRKVAVF-F-SNTPTRASPQLRE-AVLKLSDAG------ITPLFLTR 2545
dlrLresLGLltdvVLkqkYpeekkkfaeyLgrlpyteteeeevhwallr
+e+++++ ++ ++ ++v +al
tem12gi|31 2546 --------------------QEDRQLINALQI-----NN--TAVGHALVL 2568
lahssvsrfaInplqDsnSrlLaLgpelvskllqeeRiNiPgTpsgypNW
+a + +f+ n+l ++++ + +P+ +g W
tem12gi|31 2569 PAGRDLTDFLENVLTC------HVCLD--------ICNIDPSCGFG--SW 2602
r.....wRlkpsldsPmLLelifalkafiklltaiy<-*
r++ +++R ++s + + + afi + ++++
tem12gi|31 2603 RpsfrdRRAAGS--------DVDIDMAFILDSAETT 2630
Leptin: domain 1 of 1, from 2645 to 2655: score -0.8, E = 86
*->mLrqLDlsPgC<-*
++rqLD+sP+
tem12gi|31 2645 LVRQLDMSPDP 2655
US22: domain 1 of 1, from 2400 to 2661: score -120.1, E = 58
*->agLclrqddrlggLrdfve.rnaGtrLsLvWPegwfLvlrsgedipe
+++ +++d +g++ +++r ++ +Ls+v+ L+++++ +
tem12gi|31 2400 PTELAFALDTSEGVNQDTFgRMRDVVLSIVN----VLTIAESNCPT- 2441
iseedaekladdaYlCCpepLetvlGvivipgtdldvekhtersktplvv
+ ++ + + + + + +i+ + + +++s v
tem12gi|31 2442 --GARVAVVTYN-------NEV----TTEIR-----FADSKRKS-----V 2468
LlGrrGrvYPaYd....rerDdDaLyyvAesldeFarkGLrrcepvYrse
Ll++ + + a +++++ +++ a+ +vA++ + +r+G++ ++
tem12gi|31 2469 LLDKIKNLQVALTskqqSLET--AMSFVARNTFKRVRNGFL-------MR 2509
dtplstteprfvvedlrvedltslsdvlafrrehglnvklrlptpgreet
++++ f+ ++ + ++ ++vl++ + ++ + ++
tem12gi|31 2510 KVAV------FFSNTPTRASPQLREAVLKLSDAG-ITPLFLTR------- 2545
wpllllgeflrlrsvspfraldeierrrllavivqRLccrfvvlGvvGry
+ + l+ +l+ + ++ ++al + + r+l ++ L+c+ + + +
tem12gi|31 2546 QEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDP 2595
r.lfgdfvrlisilvDdfGavYavdvdDpdgrvrrlAdsfdeFlrmGllk
fg+++ + ++D++ a vd+d + + A++ + F + ++k
tem12gi|31 2596 ScGFGSWRPS---FRDRRAAGSDVDID--MAFILDSAETTTLFQFNEMKK 2640
lyenhRfrrrlrgawrlerpptcphrrfdq<-*
++ + l ++ ++ + p+ +++
tem12gi|31 2641 YIAY------LVRQLDMSP---DPKASQHF 2661
TrehaloseP_syn: domain 1 of 1, from 1983 to 2757: score -317.6, E = 50
*->srlivVSNrlPvtlkRksselegkweykismssgGLvsaldglkkaa
+r+++ l+ + +g+ + +++ ++ ld ++++
tem12gi|31 1983 ERVVNLER-----LMHLE---FGR-GFMYDRPLRLNLLDLDYELAEQ 2020
.ekvtefvvWvGwlGvevdedeg.g....l....................
+++ e +++Gv+ + + ++g+++++++ ++++ +++++ ++ +++
tem12gi|31 2021 lDNIAEK----ACCGVPCKCSGQrGdrgpIgsigpkgipgedgyrgypgd 2066
..................................................
+++++++++++ +++++ ++ +++++ +++++ ++++++ ++ + ++ ++
tem12gi|31 2067 eggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigldgldg 2116
..................................................
++++++ +++++++++++++++++++++++++++ + +++++++++++++
tem12gi|31 2117 edgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgqdsqe 2166
..................................................
+++++++++ ++ + +++++ ++++++++++++ +++++++ ++++++++
tem12gi|31 2167 rgpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnkggpg 2216
..................................................
+++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ +++++++
tem12gi|31 2217 qpgfegeqgtrgaqgpagpagppgligeqgisgprgsggargapgergrt 2266
..................................................
++ ++++++++++++++ ++++++++++++++++ +++++++++++++ +
tem12gi|31 2267 gplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrgkkgergfp 2316
..................................................
+ +++++++++++ ++++++++ +++++++++++ +++++++ +++ ++
tem12gi|31 2317 gypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypgpagp 2366
..................................................
+++++++ ++ ++ +++ + ++ + + +++ +++++ +++
tem12gi|31 2367 rgnrgdsidqcaliqsikdkcpccygplecpvfptelafaldtsegvnqd 2416
..................................................
+ ++ ++ + + + +++ +++ + + +++ +++ + +++++
tem12gi|31 2417 tfgrmrdvvlsivnvltiaesncptgarvavvtynnevtteirfadskrk 2466
......aeslkdrvslqrlkekfscvpVflddedadeyYnGafsnsiLWP
+ +++ +l+ +++ + ++ ++ + f+ + ++++ +nG
tem12gi|31 2467 svlldkIKNLQVALT--SKQQSLETAMSFVARNTFKRVRNG--------- 2505
lfHYhppyimdpldekefdrsaWdaYvrvNklFAdkivenykpdgDlIWi
+ + f + +r+ + +++ + ++ g +
tem12gi|31 2506 ---FLMR------KVAVFFSNTP---TRASPQLREAVLKLSD-AGIT--- 2539
HDYHLmLlPqmLRerlpdk.l.nakIGFFLHiPFPSSEiFRtLPtvReeI
L+L q+ R++++ + +n +G+ L LP +++
tem12gi|31 2540 ---PLFLTRQEDRQLINALqInNTAVGHAL-----------VLP-AGRDL 2574
LrGLLgaDliGFhTydYarHFLsccsRllgttkirtletesnrgtigvey
d+ ++ + +c l+ + ++++ +
tem12gi|31 2575 --------------TDFLEN-VLTCHVCLD-----ICNIDPS-----CGF 2599
gGrtvsVgafPIGIDperfesilkspsvqekikelkerfgngkAdmKlIl
g ++ p +++++ +v+ ++++ ++ + +
tem12gi|31 2600 GSWR-----------PSFRDRRAAGSDVDIDMAFILDSAETTT------- 2631
GvDRLDyiKGipqKLrAfErFLeeyPewrGKVVLvQiavpsRgdveeYqn
L ++ e+ + ++ + d + q
tem12gi|31 2632 ---------------------LFQFNEMKKYIAYLVRQLDMSPDPKASQH 2660
lrsqveelVgrINgeFGtldytP...vvflhrsldfdeliAlyaaaDvcl
++ ++V++ +e ++P+ +v f + + +e+ l
tem12gi|31 2661 FARV--AVVQHAPSESVDNASMPpvkVEFSLTDYGSKEK----------L 2698
VtslRDGMNLVayEYvacqqdaslstrkGvLILSEFaGaAqsLndgnAil
V l GM +q ++ + L ++
tem12gi|31 2699 VDFLSRGM---------TQLQ-----GTRA------------LGSA---- 2718
VNPWDieevAeaiysALtmseeeRqkrhkklfkyiskhdvqrWaesFlsd
ie + e +++ + + + l ++ e++l++
tem12gi|31 2719 -----IEYTIENVFESAPNPRDLKIV-VLMLTGEVP--------EQQLEE 2754
lkr<-*
++r
tem12gi|31 2755 AQR 2757
MCM: domain 1 of 1, from 1456 to 2764: score -376.7, E = 10
*->kpisiReLrashig.kLVrvsGiVtraSeVrPklkkavy..tCpkCg
+ + R +r +ig++ Vrv G+V + +V+P+ +y+++ p +
tem12gi|31 1456 RDFVSRIVRRLNIGpSKVRV-GVVQFSNDVFPEFYLKTYrsQAPVLD 1501
htveveiqdlfinsftkptfcpsreCptcqskgdlkeNGdCplgpfildh
++ + + +s ++ + e +++ +++
tem12gi|31 1502 AIRRLRLRG---GS--PLNTGKALEFVARN---------------LFVKS 1531
dkSkfvDfQeikiQElpeevPaGqiPRsvdvillddLVdkvkPGDrVevt
S+ D P ++ ++l +
tem12gi|31 1532 AGSRIED----------------GVPQHLVLVLGG--------------- 1550
GIyrvvpdvqLgpkkrlntsgsrGvtglkslgvgglvfktyieAnhiekl
+ +d s+ f+ +i+ +i l
tem12gi|31 1551 ----KSQD---------DVSR----------------FAQVIRSSGIVSL 1571
sseiqdnkrlggekaDlekseeeiteellsqltdedeeeikklakdkkdi
+ + + +++ +++ + it + + + +++ + +i
tem12gi|31 1572 GVG---DRNID------RTELQTITND------PRLVFTVREFRELP-NI 1605
yekLsrSlAPsIYGhedVKKAILLlLfGGveKnlpdGtkdrlRGDINiLL
e++ +S fG + ++
tem12gi|31 1606 EERIMNS-------------------FGPSAATPAP-------------- 1622
vGDPG.............................................
PG ++++++++++++ + +++ + ++++ ++ + ++ ++
tem12gi|31 1623 ---PGvdtpppsrpekkkadivflldgsinfrrdsfqevlrfvseivdtv 1669
.............................KTAKSQlLKyVeklaPRAvYT
+++++ + + + +++++++ ++ ++K + ++ + vY
tem12gi|31 1670 yedgdsiqvglvqynsdptdefflkdfstK-------RQIIDAINKVVYK 1712
sGk.GSSaVGLa......................................
G+++ + VGL + + ++ ++ +++ +++ ++ +++++ ++ ++
tem12gi|31 1713 GGRhANTKVGLEhlrvnhfvpeagsrldqrvpqiafvitggksvedaqdv 1762
..................................................
+ ++++ + + ++ ++++ ++ +++ + + ++ ++ ++ +++
tem12gi|31 1763 slaltqrgvkvfavgvrnidseevgkiasnsatafrvgnvqelselseqv 1812
..................................................
++ ++ +++ ++ ++ + + + + +++++++ +++ +++
tem12gi|31 1813 letlhdamhetlcpgvtdaakacnldvilgfdgsrdqnvfvaqkgfeskv 1862
..................................................
+ ++ ++ ++ + +++++++ + + ++++++ + + ++ +++ +
tem12gi|31 1863 dailnrisqmhrvscsggrsptvrvsvvantpsgpveafdfdeyqpemle 1912
..................................................
+ ++ +++++ ++++ + ++ +++++++ + + +++ +++ +
tem12gi|31 1913 kfrnmrsqhpyvltedtlkvylnkfrqsspdsvkvvihftdgadgdladl 1962
..................................................
++ +++ ++++ + + ++ + ++ + + +++ +++ + + +
tem12gi|31 1963 hrasenlrqegvralilvglervvnlerlmhlefgrgfmydrplrlnlld 2012
..................................................
+ + ++ ++ ++ + + + +++++++++ ++ ++++ +++++ ++
tem12gi|31 2013 ldyelaeqldniaekaccgvpckcsgqrgdrgpigsigpkgipgedgyrg 2062
..................................................
++++++++++++++ +++++ ++ +++++ +++++ ++++++ ++ + +
tem12gi|31 2063 ypgdeggpgergppgvngtqgfqgcpgqrgvkgsrgfpgekgevgeigld 2112
..................................................
+ ++++++++ +++++++++++++++++++++++++++ + +++++++++
tem12gi|31 2113 gldgedgdkglpgssgekgnpgrrgdkgprgekgergdvgirgdpgnpgq 2162
..................................................
+++++++++++++ ++ + +++++ ++++++++++++ +++++++ ++++
tem12gi|31 2163 dsqergpkgetgdlgpmgvpgrdgvpggpgetgknggfgrrgppgakgnk 2212
..................................................
+++++++ ++++++++ +++ ++ ++++ ++++ ++++++++ ++ +++
tem12gi|31 2213 ggpgqpgfegeqgtrgaqgpagpagppgligeqgisgprgsggargapge 2262
..................................................
++++++ ++++++++++++++ ++++++++++++++++ +++++++++++
tem12gi|31 2263 rgrtgplgrkgepgepgpkggignpgprgetgddgrdgvgsegrrgkkge 2312
..................................................
++ ++ +++++++++++ ++++++++ +++++++++++ +++++++ ++
tem12gi|31 2313 rgfpgypgpkgnpgepglngttgpkgirgrrgnsgppgivgqkgrpgypg 2362
..................................................
+ +++++++++ ++ ++ +++ + ++ + + +++ +++++
tem12gi|31 2363 pagprgnrgdsidqcaliqsikdkcpccygplecpvfptelafaldtseg 2412
..................................................
++++ ++ ++ + + + +++ +++ + + +++ +++ + +
tem12gi|31 2413 vnqdtfgrmrdvvlsivnvltiaesncptgarvavvtynnevtteirfad 2462
..................................................
+++++ ++ ++ + ++++++ ++ + +++ ++ +++ ++
tem12gi|31 2463 skrksvlldkiknlqvaltskqqsletamsfvarntfkrvrngflmrkva 2512
.....TAaVvRDpeTgEDwvLEaGALVLADgGvcCIDEFDKMndsDRtAI
++T + p+ +E vL+ L+D G+ + + +DR I
tem12gi|31 2513 vffsnTPT-RASPQLRE-AVLK-----LSDAGITP---LFLTRQEDRQLI 2552
HEAMEQQTISIAKAGItttLNARcSvLAAANPiyGRYDpkktpieNIdLp
I+ t++ vL A GR + + eN+
tem12gi|31 2553 ------NALQINN---TAV--GHALVLPA-----GR--DLTDFLENVLTC 2584
apLLSRFDLiFvvlDepDee............kDeeLAkHvvdvHrhskP
+ v lD+++ +++ + ++ +++ +D++ A vd+ +
tem12gi|31 2585 H----------VCLDICNIDpscgfgswrpsfRDRRAAGSDVDIDMAF-- 2622
eedgeegglvlasdadNkaeeeeieeepyekfDsllhgkkekarseklei
+++e+ +
tem12gi|31 2623 -------------------ILDSAETTT---------------------- 2631
dggeidielLrkYIaYAReqik............................
++ ++ ++kYIaY q +++++ +++ + ++ ++++ ++
tem12gi|31 2632 ---LFQFNEMKKYIAYLVRQLDmspdpkasqhfarvavvqhapsesvdna 2678
..................................PkLseeAaekiveaYv
+ ++ + + + ++ +++++ + +++ ++ +++ L + + +i++ +
tem12gi|31 2679 smppvkvefsltdygskeklvdflsrgmtqlqgtRALGSAIEYTIENVFE 2728
elRkddkrEsdtgsasrstipITaRqLEsiIRLsEAhAKlrLsdeVeeeD
+ + +R L ++ l+L eV e+
tem12gi|31 2729 SAPN-------------------PRDLKIVV--------LMLTGEVPEQQ 2751
VeeAirLireslk<-*
eeA r+i +++
tem12gi|31 2752 LEEAQRVILQAKC 2764
CorA: domain 1 of 1, from 1893 to 2768: score -134.3, E = 4
*->iedktvvWidlinePteeemaklskafgihp.ltlediedieqraKv
+ +v +d+ e+++e ++k + ++hp ++ed ++++ + +
tem12gi|31 1893 TPSGPVEAFDFD-EYQPEMLEKFRNMRSQHPyVLTEDTLKVYLNKFR 1938
eedddylfiilhffsvnldeeegvvlar......................
+d +++++hf + ++ la ++ +++ ++++ + + +
tem12gi|31 1939 QSSPDSVKVVIHF--TDGADGD---LADlhrasenlrqegvralilvgle 1983
..................................................
+ + ++ + + +++ +++ + + + + + ++ ++ ++ + +
tem12gi|31 1984 rvvnlerlmhlefgrgfmydrplrlnlldldyelaeqldniaekaccgvp 2033
..................................................
+ +++++++++ ++ ++++ +++++ ++ ++++++++++++++ +++++
tem12gi|31 2034 ckcsgqrgdrgpigsigpkgipgedgyrgypgdeggpgergppgvngtqg 2083
..................................................
++ +++++ +++++ ++++++ ++ + ++ ++++++++ ++++++++++
tem12gi|31 2084 fqgcpgqrgvkgsrgfpgekgevgeigldgldgedgdkglpgssgekgnp 2133
..................................................
+++++++++++++++++ + ++++++++++++++++++++++ ++ + ++
tem12gi|31 2134 grrgdkgprgekgergdvgirgdpgnpgqdsqergpkgetgdlgpmgvpg 2183
..................................................
+++ ++++++++++++ +++++++ +++++++++++ ++++++++ +++
tem12gi|31 2184 rdgvpggpgetgknggfgrrgppgakgnkggpgqpgfegeqgtrgaqgpa 2233
..................................................
++ ++++ ++++ ++++++++ ++ +++++++++ ++++++++++++++
tem12gi|31 2234 gpagppgligeqgisgprgsggargapgergrtgplgrkgepgepgpkgg 2283
..................................................
++++++++++++++++ +++++++++++++ ++ +++++++++++ +++
tem12gi|31 2284 ignpgprgetgddgrdgvgsegrrgkkgergfpgypgpkgnpgepglngt 2333
..................................................
+++++ +++++++++++ +++++++ +++ +++++++++ ++ ++
tem12gi|31 2334 tgpkgirgrrgnsgppgivgqkgrpgypgpagprgnrgdsidqcaliqsi 2383
..................................................
+++ + ++ + + +++ +++++ ++++ ++ ++ + + +
tem12gi|31 2384 kdkcpccygplecpvfptelafaldtsegvnqdtfgrmrdvvlsivnvlt 2433
..................................................
+++ +++ + + +++ +++ + ++++++ ++ ++ + +++
tem12gi|31 2434 iaesncptgarvavvtynnevtteirfadskrksvlldkiknlqvaltsk 2483
.....................eeleteqvsiv.........lgknfllTi
+++ ++ + +++ ++ ++++l ++ +++++++++ +++ ++ +l +
tem12gi|31 2484 qqsletamsfvarntfkrvrnGFLMRKVAVFFsntptraspQLREAVLKL 2533
herheidilasvRkRirtkkpgvlrqkgsdylfyalldaiidsyfpvlek
i l+ R + r++ ++ +++ ++ + + ++
tem12gi|31 2534 SDA-GITPLFLTRQEDRQL---INA--------LQINNTAV--GHALVLP 2569
iedeieeLEdqIlagr.........................stpsstild
+ ++ + +++l ++ + + +++ + ++ +++ ++++ +s+ +d
tem12gi|31 2570 AGRDLTDFLENVLTCHvcldicnidpscgfgswrpsfrdrrAAGSDVDID 2619
eIlslrrelldlvtlrralipkrdvlnfllretkepwiip..........
++ l++ t + ++++ + + l+r+ + p+++ +++ +
tem12gi|31 2620 MAFILDSAET---TTLFQFNEMKKYIAYLVRQLDMS---Pdpkasqhfar 2663
...........................qkEvreylrDiydHtdqllevie
++ ++++ ++ + ++ + + + ++ + +e+l D+ ++ + l+ ++
tem12gi|31 2664 vavvqhapsesvdnasmppvkvefsltDYGSKEKLVDFLSRGMTQLQGTR 2713
tyrellsRsHsNsLmdiylslvvsnrqNeImKilTvvttiFiPpTlIaGi
+ ++ +i++ + s +++Ki ++++l++
tem12gi|31 2714 ALGSAIE-------YTIENVFE-SAPNPRDLKI--------VVLMLTG-- 2745
YGMNFkWfMPELnwkyGYpfvlilMvllallmlywFrrKgWL<-*
+ +PE++ ++ + + Kg++
tem12gi|31 2746 -----E--VPEQQLEEAQRVI------------LQAKCKGYF 2768
Peptidase_S24: domain 1 of 1, from 2664 to 2776: score -48.7, E = 33
*->idvfvdsslreesslPlfsdrvqAGfpipAaeyieerdeldlndycv
++v+++ + +++++ + +++v+ f +++ e+ d +++
tem12gi|31 2664 VAVVQHAPSESVDNASMPPVKVE--FSLTDYGSKEK--LVDFLSRGM 2706
krPeatffLrVsGdSMkdPaGklSIldGDlLvVDksetarnGdiVVArie
+ t r+ G+ + + I++ v +++ ++r+ +iVV+++
tem12gi|31 2707 TQLQGT---RALGSAIEY--T---IEN----VFESAPNPRDLKIVVLMLT 2744
gdkEfTVKRLqlrpgrvaLiPlNpayppItineee<-*
g E+ L rv L++ + y + ++ +
tem12gi|31 2745 G--EVPEQQLEEAQ-RVILQAKCKGYFFVVLGIGR 2776
vwa: domain 11 of 11, from 2619 to 2809: score 44.9, E = 1.8e-09
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeeda.vrV
D +F+lD+ + F+++K + +v +Ld +p d+k++++ +rV
tem12gi|31 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSP-DPKASQHfARV 2664
glvQYSdn..........vrtEikfklndyqnkdevlqalqkiryedyyg
++vQ + ++ ++ + ++v++E f+l dy +k+++ + l++ + +++
tem12gi|31 2665 AVVQHAPSesvdnasmppVKVE--FSLTDYGSKEKLVDFLSRGM---TQL 2709
gggtnTgaALqyvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddp
g +g+A+ y+++n+f a +R + + v+++lT+ + +
tem12gi|31 2710 QGTRALGSAIEYTIENVFESAPNPR-------DLKIVVLMLTGEVPEQQL 2752
spTidirdvlnelkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvf
++ ++v+ ++k +g+ +++G+G +n +e+ +As+p + ++
tem12gi|31 2753 EE---AQRVILQAKC-KGYFFVVLGIGRKVN--IKEVYTFASEPNdVFFK 2796
kvsdfeaLdtlqelL<-*
v+ +++L +e+L
tem12gi|31 2797 LVDKSTELN--EEPL 2809
FARP: domain 1 of 1, from 2804 to 2814: score 11.1, E = 19
*->srdkrfmRFGR<-*
++++ mRFGR
tem12gi|31 2804 LNEEPLMRFGR 2814
Keratin_B2: domain 1 of 1, from 2862 to 2972: score -94.0, E = 44
*->qtScCGfptCStlgtrPsCGsscCQPsCCeSCCQpsCcqpSCCqPtc
+tS +pt t +P + + +P
tem12gi|31 2862 VTS---SPTSNPVTT--------TKP----------VTTT---KP-- 2882
sqtscCqPtcfqssCCrPsCcqTSCCqPtCcqsssCqtgCgigGsiGyGQ
t+ +P++ + +P ++ qP+ + +
tem12gi|31 2883 -VTTTTKPVTTTT---KPVTII---NQPS-VKPAAAKPAP---------- 2914
eGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqpvsaQasCCR
+ +P t +Pp+ v ta +pv a R
tem12gi|31 2915 --------AKPVAAKPVATKTATVRPPVAVKPATAA---KPVAAKPAAVR 2953
PsCqPyCgqsCCRPaCccsvtCtrTccePc<-*
P + +P+ + +P
tem12gi|31 2954 PP----A--AAAKPVATKP-----EVPRPQ 2972
fn3: domain 1 of 1, from 2986 to 3068: score 2.4, E = 1.3
*->P.saP.tnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge
P + + ++v ++t++s+ l+W++p+ Y +t+ ++ +++
tem12gi|31 2986 PvVKMlREVQVFEITENSAKLHWERPE-PPGPYFYDLTV-TSAHDQS 3030
.wneltvpgtttsytltgLkPgteYevrVq..AvnggGGpeS<-*
++++ t ++ gL +g +Y+v V+ ++++ +++
tem12gi|31 3031 lVLKQNLTVTD--RVIGGLLAGQTYHVAVVcyLRSQV--RAT 3068
Luteo_Vpg: domain 1 of 1, from 3058 to 3121: score -66.4, E = 60
*->lelPEeQAraRHSysQRTtSraTPrEVSpSGRlYQnArHSqmEYSRP
++ Q+ra++ s +T
tem12gi|31 3058 VCYLRSQVRATYHGSFSTK---------------------------- 3076
TMsIRSqvSswSSSpRPLPpppVPSLmswT..ptAktqpssptlisSqSq
+Sq P+Pp+p+ S s+T ++ ++t p l+
tem12gi|31 3077 ----KSQ---------PPPPQPARSASSSTinLMVSTEPLA--LTETDIC 3111
rlvrkvsqrr<-*
+l+++ + r
tem12gi|31 3112 KLPKDEGTCR 3121
Kunitz_BPTI: domain 1 of 1, from 3111 to 3161: score 94.1, E = 2e-29
*->CslPpdtGptkcpCkggnfarywRwYYdpatgktTkCepFtYgGCgG
C lP+d+G C+ + + +wYYdp+t++ C +F+YgGCgG
tem12gi|31 3111 CKLPKDEGT----CR----DFILKWYYDPNTKS---CARFWYGGCGG 3146
NaNNFetkeeCertC<-*
N+N F +++eCe+ C
tem12gi|31 3147 NENKFGSQKECEKVC 3161
//
Start with PfamFrag (from /data/patterns/pfam)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/pfam/PfamFrag
Sequence file: tem12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
vwa von Willebrand factor type A domain 1887.3 0 12
Collagen Collagen triple helix repeat (20 copi 178.2 1.4e-49 6
Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhi 94.1 2e-29 1
FARP FMRFamide related peptide family 9.2 0.31 1
fn3 Fibronectin type III domain 6.4 2.2 1
DUF24 Protein of unknown function DUF24 4.7 4 1
TBP Transcription factor TFIID (or TATA-b 4.6 7.4 1
DUF125 Integral membrane protein DUF125 3.4 5 1
Barwin Barwin family 3.3 6.1 1
Amidase_2 N-acetylmuramoyl-L-alanine amidase 3.2 7.7 1
TarH Tar ligand binding domain homologues 2.9 15 1
HTH_4 Helix-turn-helix protein, copG family 2.6 49 1
formyl_transf Formyl transferase 2.0 21 1
DUF104 Protein of unknown function DUF104 2.0 31 1
RecR RecR protein 2.0 82 1
Ribosomal_L5 Ribosomal protein L5 1.9 78 1
TIG IPT/TIG domain 1.4 79 1
DUF44 Domain of unknown function DUF44 1.4 48 1
ELH Egg-laying hormone precursor 0.8 10 1
UNG Uracil-DNA glycosylase 0.7 59 1
PSI_PsaJ Photosystem I reaction centre subunit 0.6 99 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 0.5 77 1
GST Glutathione S-transferases. 0.4 43 1
DAHP_synth_1 DAHP synthetase family 0.4 27 1
Basic Myogenic Basic domain 0.4 68 1
Histidinol_dh Histidinol dehydrogenase 0.0 31 1
DNA_mis_repair DNA mismatch repair protein -0.3 71 1
catalase Catalase -0.3 53 1
Phage_F Capsid protein (F protein) -0.4 42 1
Peptidase_C13 Peptidase C13 family -0.6 53 1
Na_K_ATPase_C Na+/K+ ATPase C-terminus -0.7 84 1
Leptin Leptin -0.8 86 1
CN_hydrolase Carbon-nitrogen hydrolase -0.8 57 1
A2M_N Alpha-2-macroglobulin family N-termin -0.9 32 1
Polyhedrin Polyhedrin -0.9 77 1
Hex_IIIa Hexon-associated protein (IIIa) -1.1 54 1
Tissue_fac Tissue factor -1.2 96 1
Rhabd_nucleocap Rhabdovirus nucleocapsid protein -1.4 89 1
PDEase 3'5'-cyclic nucleotide phosphodiester -1.5 61 1
Seedstore_11s 11S plant seed storage protein -1.5 97 1
Asparaginase_2 Asparaginase -1.7 82 1
COLFI Fibrillar collagen C-terminal domain -1.8 83 1
actin Actin -2.8 91 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
A2M_N 1/1 1 18 [. 1 20 [. -0.9 32
DUF125 1/1 9 20 .. 172 184 .] 3.4 5
Seedstore_11s 1/1 1 29 [. 1 29 [. -1.5 97
vwa 1/12 39 213 .. 1 200 [] 198.3 3.5e-57
DUF44 1/1 210 229 .. 62 81 .] 1.4 48
vwa 2/12 242 415 .. 1 200 [] 190.8 5.6e-55
Rhabd_nucleocap 1/1 423 438 .. 1 16 [. -1.4 89
HTH_4 1/1 480 496 .. 29 45 .] 2.6 49
Asparaginase_2 1/1 550 568 .. 1 21 [. -1.7 82
ELH 1/1 573 592 .. 243 262 .] 0.8 10
Polyhedrin 1/1 586 603 .. 202 219 .. -0.9 77
vwa 3/12 445 620 .. 1 200 [] 211.7 4.1e-61
TarH 1/1 755 772 .. 1 18 [. 2.9 15
catalase 1/1 784 796 .. 304 316 .. -0.3 53
vwa 4/12 639 812 .. 1 200 [] 226.1 2.4e-65
vwa 5/12 837 1009 .. 1 200 [] 174.2 4.4e-50
GST 1/1 1029 1058 .. 182 207 .] 0.4 43
vwa 6/12 1029 1201 .. 1 200 [] 196.2 1.4e-56
TIG 1/1 1219 1251 .. 67 103 .] 1.4 79
Hex_IIIa 1/1 1302 1310 .. 525 534 .] -1.1 54
COLFI 1/1 1324 1331 .. 1 9 [. -1.8 83
vwa 7/12 1233 1404 .. 1 200 [] 205.6 2.5e-59
PSI_PsaJ 1/1 1490 1503 .. 1 16 [. 0.6 99
vwa 8/12 1436 1609 .. 1 200 [] 221.9 4.2e-64
Phage_F 1/1 1594 1612 .. 412 430 .] -0.4 42
PDEase 1/1 1648 1666 .. 95 113 .. -1.5 61
DUF104 1/1 1663 1673 .. 1 12 [. 2.0 31
Histidinol_dh 1/1 1644 1674 .. 1 32 [. 0.0 31
Ribosomal_L5 1/1 1718 1740 .. 1 31 [. 1.9 78
TBP 1/1 1749 1763 .. 63 77 .. 4.6 7.4
DNA_mis_repair 1/1 1778 1791 .. 1 14 [. -0.3 71
vwa 9/12 1639 1812 .. 1 200 [] 199.5 1.5e-57
DAHP_synth_1 1/1 1807 1821 .. 341 355 .] 0.4 27
UNG 1/1 1937 1949 .. 10 22 .. 0.7 59
Amidase_2 1/1 1930 1952 .. 1 28 [. 3.2 7.7
Collagen 1/6 2038 2097 .. 1 60 [] 46.4 2.9e-11
Collagen 2/6 2104 2163 .. 1 60 [] 49.6 3.8e-12
Collagen 3/6 2166 2193 .. 26 53 .. 9.0 0.54
Collagen 4/6 2195 2246 .. 1 52 [. 29.6 1.2e-06
Collagen 5/6 2249 2300 .. 1 52 [. 32.8 1.6e-07
Collagen 6/6 2314 2373 .. 1 60 [] 50.6 2e-12
Basic 1/1 2464 2471 .. 108 115 .] 0.4 68
formyl_transf 1/1 2509 2529 .. 1 21 [. 2.0 21
vwa 10/12 2402 2581 .. 1 200 [] 85.6 4.6e-24
actin 1/1 2570 2583 .. 184 197 .. -2.8 91
zf-C3HC4 1/1 2584 2594 .. 1 17 [. 0.5 77
RecR 1/1 2565 2595 .. 1 31 [. 2.0 82
Leptin 1/1 2645 2655 .. 136 146 .] -0.8 86
vwa 11/12 2619 2668 .. 1 50 [. 7.8 0.35
CN_hydrolase 1/1 2661 2676 .. 1 19 [. -0.8 57
DUF24 1/1 2682 2693 .. 59 70 .. 4.7 4
Na_K_ATPase_C 1/1 2750 2770 .. 71 91 .. -0.7 84
vwa 12/12 2683 2809 .. 55 200 .] 35.7 2.1e-09
FARP 1/1 2804 2814 .. 1 11 [] 9.2 0.31
Tissue_fac 1/1 2962 2979 .. 1 20 [. -1.2 96
fn3 1/1 2998 3058 .. 11 74 .. 6.4 2.2
Barwin 1/1 3062 3070 .. 1 10 [. 3.3 6.1
Peptidase_C13 1/1 3060 3110 .. 307 364 .] -0.6 53
Kunitz_BPTI 1/1 3111 3161 .. 1 62 [] 94.1 2e-29
Alignments of top-scoring domains:
A2M_N: domain 1 of 1, from 1 to 18: score -0.9, E = 32
*->MgkdrllqlcLwllLllLlf<-*
M+k+r l L+ + +l+l+
tem12gi|31 1 MRKHRH--LPLVAVFCLFLS 18
DUF125: domain 1 of 1, from 9 to 20: score 3.4, E = 5
*->vvAvlslllekgs<-*
+vAv++l l+ g+
tem12gi|31 9 LVAVFCLFLS-GF 20
Seedstore_11s: domain 1 of 1, from 1 to 29: score -1.5, E = 97
*->MAkklasl.lvfsLcLlll.fngclAqqeQQ<-*
M k ++l+lv+ +cL+l++f + Aqq QQ
tem12gi|31 1 M-RKHRHLpLVAVFCLFLSgFPTTHAQQ-QQ 29
vwa: domain 1 of 12, from 39 to 213: score 198.3, E = 3.5e-57
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di+FL+D+S+ ig+ F++v++F+++vv +L vg+ + +++
tem12gi|31 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGE-ND-----FHFA 79
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQ+++n++tE f+ln+y++k evl+ ++++ y+gg + Tg++L
tem12gi|31 80 LVQFNGNPHTE--FLLNTYRTKQEVLSHISNMS----YIGGTNQTGKGLE 123
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
y + + t+a+GsR a g+p+v+VvlTDG s d+ + +++
tem12gi|31 124 YIMQSHLTKAAGSR----AGDGVPQVIVVLTDGHSKDG------LALPSA 163
elkkeagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtl
elk a+v+vfaiGv +ad + L+eIAs+p ++h f++++f++L+++
tem12gi|31 164 ELKS-ADVNVFAIGVEDAD---EGALKEIASEPLnMHMFNLENFTSLHDI 209
qelL<-*
+ L
tem12gi|31 210 VGNL 213
DUF44: domain 1 of 1, from 210 to 229: score 1.4, E = 48
*->pGqiVfcVmaritSdepGkt<-*
+G +V cV + ++ G+t
tem12gi|31 210 VGNLVSCVHSSVSPERAGDT 229
vwa: domain 2 of 12, from 242 to 415: score 190.8, E = 5.6e-55
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di+FL+DGS++ gs nF+ ++dF++++ e+L +g ++ +rVg
tem12gi|31 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGT-QQ-----IRVG 282
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+vQ+Sd++rt f+l++y++k+ vl a++++ + gg+ +n+g AL+
tem12gi|31 283 VVQFSDEPRTM--FSLDTYSTKAQVLGAVKALG---FAGGELANIGLALD 327
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+vv+n+ft+a GsR eeg+p+vlV++++G+s+d ir +
tem12gi|31 328 FVVENHFTRAGGSR----VEEGVPQVLVLISAGPSSDE------IRYGVV 367
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+lk+ a+v f++G+ a + +eL+ IA+++ + vf v f++ +lq
tem12gi|31 368 ALKQ-ASVFSFGLGAQAASR---AELQHIATDD-NLVFTVPEFRSFGDLQ 412
elL<-*
e+L
tem12gi|31 413 EKL 415
Rhabd_nucleocap: domain 1 of 1, from 423 to 438: score -1.4, E = 89
*->nnqvvsvklPanedPv<-*
+ +++k+P+++++v
tem12gi|31 423 AQRHIVLKPPTIVTQV 438
HTH_4: domain 1 of 1, from 480 to 496: score 2.6, E = 49
*->elirealekyleekekq<-*
+li++a+ +y+++ + +
tem12gi|31 480 DLIQVAVAQYADTVRPE 496
Asparaginase_2: domain 1 of 1, from 550 to 568: score -1.7, E = 82
*->gtllIaihgleGagdidsseP<-*
++ll+ i g G++++ +s+P
tem12gi|31 550 PKLLVLITG--GKSLDEISQP 568
ELH: domain 1 of 1, from 573 to 592: score 0.8, E = 10
*->KRssevsLlasdkdeeeRel<-*
KRss ++ + ++k+ ++ el
tem12gi|31 573 KRSSIMAFAIGNKGADQAEL 592
Polyhedrin: domain 1 of 1, from 586 to 603: score -0.9, E = 77
*->GtdSaEeEEILlEVSLvF<-*
G d aE EEI SLvF
tem12gi|31 586 GADQAELEEIAFDSSLVF 603
vwa: domain 3 of 12, from 445 to 620: score 211.7, E = 4.1e-61
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL+DGS+ +g +nF++++dF+ +v++rL++g+ d ++V+
tem12gi|31 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQ-DL-----IQVA 485
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
++QY+d vr+E f++n++++k ev+ a++k++ ++ g+++ Tg+AL+
tem12gi|31 486 VAQYADTVRPE--FYFNTHPTKREVITAVRKMK---PLDGSALYTGSALD 530
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+v++nlft ++G R a eg+pk+lV++T+G+s d i ++++
tem12gi|31 531 FVRNNLFTSSAGYR----AAEGIPKLLVLITGGKSLDE------ISQPAQ 570
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfea..Ldt
elk+ +++ faiG ++ad ++eL+eIA++ vf+ f+a +L+
tem12gi|31 571 ELKR-SSIMAFAIGNKGAD---QAELEEIAFDS-SLVFIPAEFRAapLQG 615
lqelL<-*
+ + L
tem12gi|31 616 MLPGL 620
TarH: domain 1 of 1, from 755 to 772: score 2.9, E = 15
*->etssyQqaalslsrvlll<-*
+++sy qaa++l+r+++l
tem12gi|31 755 SEDSYLQAANALTRAGIL 772
catalase: domain 1 of 1, from 784 to 796: score -0.3, E = 53
*->AEvEQaAFsPahl<-*
AE EQ+AF+P+ +
tem12gi|31 784 AELEQIAFNPSLV 796
vwa: domain 4 of 12, from 639 to 812: score 226.1, E = 2.4e-65
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di+FLlDGS ++g nF+ v+dFv+++v++Ld+g d+ +rVg
tem12gi|31 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGN-DN-----IRVG 679
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQ+Sd + tE f+ln+yq+k+++l l++++ +gg+g+nTg+AL
tem12gi|31 680 LVQFSDTPVTE--FSLNTYQTKSDILGHLRQLQ---LQGGSGLNTGSALS 724
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
yv+ n+ftea GsRi+ e++p++l++lT+G+s d+ + +++n
tem12gi|31 725 YVYANHFTEAGGSRIR----EHVPQLLLLLTAGQSEDS------YLQAAN 764
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+l + ag+ +f +G+ +a + +eL++IA++p v+ ++df++L+ l
tem12gi|31 765 ALTR-AGILTFCVGASQANK---AELEQIAFNP-SLVYLMDDFSSLPALP 809
elL<-*
++L
tem12gi|31 810 QQL 812
vwa: domain 5 of 12, from 837 to 1009: score 174.2, E = 4.4e-50
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
Di FL DGS ++ q F+ v+dF++++++ L+v p +r++
tem12gi|31 837 DILFLFDGSANLVGQ-FPVVRDFLYKIIDELNVKP-EG-----TRIA 876
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
++QYSd+v++E ++++q+k e+l +++++ ++g+++n+g AL+
tem12gi|31 877 VAQYSDDVKVE--SRFDEHQSKPEILNLVKRMK---IKTGKALNLGYALD 921
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
y+ r++f +++GsR +e g+ ++lV+l++Grs+d+ ++ ++
tem12gi|31 922 YAQRYIFVKSAGSR----IEDGVLQFLVLLVAGRSSDR------VDGPAS 961
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+lk+ gv++f++ ++nad ++eL++I+ p ++++ ++ + + +l
tem12gi|31 962 NLKQ-SGVVPFIFQAKNAD---PAELEQIVLSP-AFILAAESLPKIGDLH 1006
elL<-*
+++
tem12gi|31 1007 PQI 1009
GST: domain 1 of 1, from 1029 to 1058: score 0.4, E = 43
*->dwlerldldp....eyPnLkawrervaarp<-*
d ++ ld++++ ++++P Lk +++rv ++
tem12gi|31 1029 DVVFLLDGSEgvrsGFPLLKEFVQRVVESL 1058
vwa: domain 6 of 12, from 1029 to 1201: score 196.2, E = 1.4e-56
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
D+vFLlDGS+ ++s +F++ K+Fv rvve+Ldvg+ d vrV+
tem12gi|31 1029 DVVFLLDGSEGVRS-GFPLLKEFVQRVVESLDVGQ-DR-----VRVA 1068
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggt.nTgaAL
+vQYSd+ r+E f+ln y nk +v a++++ ++gg+t+nTgaAL
tem12gi|31 1069 VVQYSDRTRPE--FYLNSYMNKQDVVNAVRQLT----LLGGPTpNTGAAL 1112
qyvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl
+v rn+ ++GsR + eg+p++l+vlT++rs dd +r ++
tem12gi|31 1113 EFVLRNILVSSAGSR----ITEGVPQLLIVLTADRSGDD------VRNPS 1152
nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl
++k+ g ++++iG+Gnad e++ I++ p d++ +f++L t+
tem12gi|31 1153 VVVKR-GGAVPIGIGIGNAD---ITEMQTISFIP-DFAVAIPTFRQLGTV 1197
qelL<-*
q+ +
tem12gi|31 1198 QQVI 1201
TIG: domain 1 of 1, from 1219 to 1251: score 1.4, E = 79
*->ktPpva.pgpsppv.vtvsvdgggsgdgrssspvtFtYv<-*
++ p+++pg++++++v + +dg++ s++ F+Yv
tem12gi|31 1219 VLQPLPsPGVGGKRdVVFLIDGSQ------SAGPEFQYV 1251
Hex_IIIa: domain 1 of 1, from 1302 to 1310: score -1.1, E = 54
*->LRPqRlGRqy<-*
LRP ++GRq
tem12gi|31 1302 LRP-KGGRQI 1310
COLFI: domain 1 of 1, from 1324 to 1331: score -1.8, E = 83
*->lksPeGksr<-*
+k+P+G sr
tem12gi|31 1324 FKRPLG-SR 1331
vwa: domain 7 of 12, from 1233 to 1404: score 205.6, E = 2.5e-59
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
D+vFL+DGS+S g+ +F+ v+ +er+v+ Ldvg d+ +rV+
tem12gi|31 1233 DVVFLIDGSQSAGP-EFQYVRTLIERLVDYLDVGF-DT-----TRVA 1272
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
++Q+Sd+++ E f+ln++++kdev a+q++r ++gg + n+g AL
tem12gi|31 1273 VIQFSDDPKAE--FLLNAHSSKDEVQNAVQRLR---PKGGRQINVGNALE 1317
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
yv rn+f++ GsR +eeg+p++lV+++ G+s+d + ++
tem12gi|31 1318 YVSRNIFKRPLGSR----IEEGVPQFLVLISSGKSDDE------VVVPAV 1357
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
elk+ gv +f+i+ +nad +eeL++I+ p ++vf+vs+f++L+ l+
tem12gi|31 1358 ELKQ-FGVAPFTIA-RNAD---QEELVKISLSP-EYVFSVSTFRELPSLE 1401
elL<-*
++L
tem12gi|31 1402 QKL 1404
PSI_PsaJ: domain 1 of 1, from 1490 to 1503: score 0.6, E = 99
*->mklkkyLstAPvlavl<-*
lk+y s APvl ++
tem12gi|31 1490 --LKTYRSQAPVLDAI 1503
vwa: domain 8 of 12, from 1436 to 1609: score 221.9, E = 4.2e-64
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFL+D+S+ +++++F++++dFv+r+v rL++gp k vrVg
tem12gi|31 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGP-SK-----VRVG 1476
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+vQ+S++v +E f+l++y++ + vl+a++++r +gg+++nTg+AL
tem12gi|31 1477 VVQFSNDVFPE--FYLKTYRSQAPVLDAIRRLR---LRGGSPLNTGKALE 1521
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+v+rnlf +++GsR +e g+p++lV++ +G+sqdd + + ++
tem12gi|31 1522 FVARNLFVKSAGSR----IEDGVPQHLVLVLGGKSQDD------VSRFAQ 1561
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+++ g++ ++G +n+d+ eL+ I ++p + vf v+ f++L++++
tem12gi|31 1562 VIRS-SGIVSLGVGDRNIDR---TELQTITNDP-RLVFTVREFRELPNIE 1606
elL<-*
e +
tem12gi|31 1607 ERI 1609
Phage_F: domain 1 of 1, from 1594 to 1612: score -0.4, E = 42
*->fnvsvYRhlPttRDsimts<-*
f v +R+lP + + im s
tem12gi|31 1594 FTVREFRELPNIEERIMNS 1612
PDEase: domain 1 of 1, from 1648 to 1666: score -1.5, E = 61
*->qNLskkdfrtlrdlvieaI<-*
+N+ ++ f++ +++v+e++
tem12gi|31 1648 INFRRDSFQEVLRFVSEIV 1666
DUF104: domain 1 of 1, from 1663 to 1673: score 2.0, E = 31
*->MPKIIEAIYENG<-*
++I++ +YE+G
tem12gi|31 1663 -SEIVDTVYEDG 1673
Histidinol_dh: domain 1 of 1, from 1644 to 1674: score 0.0, E = 31
*->lrkllrRpvqdvseeilktVkpIieaVkenGD<-*
l ++ ++ ++ e +l+ V +I++ V e GD
tem12gi|31 1644 LDGSINFRRDSFQE-VLRFVSEIVDTVYEDGD 1674
Ribosomal_L5: domain 1 of 1, from 1718 to 1740: score 1.9, E = 78
*->NvNTMqvPkPleKiViNmGvGEagddkkiLe<-*
N+ +++ le +++N +v+Eag + L+
tem12gi|31 1718 NT----KVG-LEHLRVNHFVPEAGSR---LD 1740
TBP: domain 1 of 1, from 1749 to 1763: score 4.6, E = 7.4
*->ViTGAKSeedakrAv<-*
ViTG+KS+eda +++
tem12gi|31 1749 VITGGKSVEDAQDVS 1763
DNA_mis_repair: domain 1 of 1, from 1778 to 1791: score -0.3, E = 71
*->IkqLdpelvnkIAa<-*
++ +d+e v kIA+
tem12gi|31 1778 VRNIDSEEVGKIAS 1791
vwa: domain 9 of 12, from 1639 to 1812: score 199.5, E = 1.5e-57
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
DivFLlDGS + +++ F++v++Fv+++v+ ++++ d+ ++Vg
tem12gi|31 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDG-DS-----IQVG 1679
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
lvQY+++++ E f l+d+++k +++a++k++ y+gg +nT +L
tem12gi|31 1680 LVQYNSDPTDE--FFLKDFSTKRQIIDAINKVV---YKGGRHANTKVGLE 1724
yvvrnlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvln
+++ n+f +++GsR+ ++++p+++ v+T+G+s +d +dv+
tem12gi|31 1725 HLRVNHFVPEAGSRL----DQRVPQIAFVITGGKSVED------AQDVSL 1764
elkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtlq
+l + +gv+vfa+Gv+n+d +ee+ +IAs+ +++f+v++ ++L++l
tem12gi|31 1765 ALTQ-RGVKVFAVGVRNID---SEEVGKIASNS-ATAFRVGNVQELSELS 1809
elL<-*
e++
tem12gi|31 1810 EQV 1812
DAHP_synth_1: domain 1 of 1, from 1807 to 1821: score 0.4, E = 27
*->EdTealLeqLAqAVr<-*
E +e++Le L++A
tem12gi|31 1807 ELSEQVLETLHDAMH 1821
UNG: domain 1 of 1, from 1937 to 1949: score 0.7, E = 59
*->lrfcppedVkVVI<-*
+r+++p+ VkVVI
tem12gi|31 1937 FRQSSPDSVKVVI 1949
Amidase_2: domain 1 of 1, from 1930 to 1952: score 3.2, E = 7.7
*->vnvnkyqrnyPgrkmkpegPivIviHnT<-*
++v+++++ r+++p+ +++viH T
tem12gi|31 1930 LKVYLNKF----RQSSPDS-VKVVIHFT 1952
Collagen: domain 1 of 6, from 2038 to 2097: score 46.4, E = 2.9e-11
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G +G +Gp G Gp+G pG+ G +G pG+ G pGe+GpPG G G+
tem12gi|31 2038 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGF 2084
pGppGapGapGpp<-*
+G pG+ G +G +
tem12gi|31 2085 QGCPGQRGVKGSR 2097
Collagen: domain 2 of 6, from 2104 to 2163: score 49.6, E = 3.8e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+ G G+ G++G++G pG +G++G+pG +G++Gp G +G+ G
tem12gi|31 2104 GEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 2150
pGppGapGapGpp<-*
G +G pG pG+
tem12gi|31 2151 VGIRGDPGNPGQD 2163
Collagen: domain 3 of 6, from 2166 to 2193: score 9.0, E = 0.54
*->apGppGppGepGpPGppGppGppGppGa<-*
++Gp+G G+ Gp G pG++G pG pG+
tem12gi|31 2166 ERGPKGETGDLGPMGVPGRDGVPGGPGE 2193
Collagen: domain 4 of 6, from 2195 to 2246: score 29.6, E = 1.2e-06
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G G++GppG++G++G pG++G+ G++G +G+ Gp Gp+GppG
tem12gi|31 2195 GKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGL 2241
pGppG<-*
G++G
tem12gi|31 2242 IGEQG 2246
Collagen: domain 5 of 6, from 2249 to 2300: score 32.8, E = 1.6e-07
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G+ G++G+pG++G+ Gp G +G+pG+pGp+G G PGp+G+ G
tem12gi|31 2249 GPRGSGGARGAPGERGRTGPLGRKGEPGEPGPKGGIGNPGPRGETGD 2295
pGppG<-*
G +G
tem12gi|31 2296 DGRDG 2300
Collagen: domain 6 of 6, from 2314 to 2373: score 50.6, E = 2e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G pG pGp+G pG+pG G +Gp+G +G +G++G+pG G++G+pG
tem12gi|31 2314 GFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGY 2360
pGppGapGapGpp<-*
pGp+G+ G G
tem12gi|31 2361 PGPAGPRGNRGDS 2373
Basic: domain 1 of 1, from 2464 to 2471: score 0.4, E = 68
*->KRKsvsvD<-*
KRKsv D
tem12gi|31 2464 KRKSVLLD 2471
formyl_transf: domain 1 of 1, from 2509 to 2529: score 2.0, E = 21
*->mkiavliSGtgsnlqalldal<-*
+k+av++S t++ ++++l ++
tem12gi|31 2509 RKVAVFFSNTPTRASPQLREA 2529
vwa: domain 10 of 12, from 2402 to 2581: score 85.6, E = 4.6e-24
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeedavrVg
+++F lD S+ + ++ F r++d v +v+ L+++++++ ++++rV+
tem12gi|31 2402 ELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNC--PTGARVA 2446
lvQYSdnvrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALq
+v+Y+++v+tE + ++d+++k+ +l+++++++ ++ ++ + +A+
tem12gi|31 2447 VVTYNNEVTTE--IRFADSKRKSVLLDKIKNLQV--ALTSKQQSLETAMS 2492
yvvrnlft.easGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvl
+v+rn f++ ++G ++kv+V+++ +++ +p ++r+++
tem12gi|31 2493 FVARNTFKrVRNGF--------LMRKVAVFFSNTPTRASP----QLREAV 2530
nelkkeagvevfaiGvGnadnnnleeLreIAskpddhvfkvsdfeaLdtl
+l + ag+++ + ++ d ++l + +I + ++ h++ + ++L +
tem12gi|31 2531 LKLSD-AGITPLFLT-RQED-RQLINALQINNTAVGHALVLPAGRDLTDF 2577
qelL<-*
e +
tem12gi|31 2578 LENV 2581
actin: domain 1 of 1, from 2570 to 2583: score -2.8, E = 91
*->AGRDLtdylmkiLt<-*
AGRDLtd+l +Lt
tem12gi|31 2570 AGRDLTDFLENVLT 2583
zf-C3HC4: domain 1 of 1, from 2584 to 2594: score 0.5, E = 77
*->CpICltTFdldepkpfk<-*
C++C ld+ ++++
tem12gi|31 2584 CHVC-----LDI-CNID 2594
RecR: domain 1 of 1, from 2565 to 2595: score 2.0, E = 82
*->aevlrLAkaLleAkerlgyCsvCgaltdeev<-*
a vl + L++ +e++ +C vC +++ ++
tem12gi|31 2565 ALVLPAGRDLTDFLENVLTCHVCLDICNIDP 2595
Leptin: domain 1 of 1, from 2645 to 2655: score -0.8, E = 86
*->mLrqLDlsPgC<-*
++rqLD+sP+
tem12gi|31 2645 LVRQLDMSPDP 2655
vwa: domain 11 of 12, from 2619 to 2668: score 7.8, E = 0.35
*->DivFLlDGSgSigsqnFervKdFvervverLdvgprdkkeeda.vrV
D +F+lD+ + F+++K + +v +Ld +p d+k++++ +rV
tem12gi|31 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSP-DPKASQHfARV 2664
glvQ<-*
++vQ
tem12gi|31 2665 AVVQ 2668
CN_hydrolase: domain 1 of 1, from 2661 to 2676: score -0.8, E = 57
*->kvkvAavQaapvlvteDla<-*
++vA+vQ+ap e+++
tem12gi|31 2661 FARVAVVQHAP---SESVD 2676
DUF24: domain 1 of 1, from 2682 to 2693: score 4.7, E = 4
*->PpkVEYSLTekG<-*
P+kVE SLT++G
tem12gi|31 2682 PVKVEFSLTDYG 2693
Na_K_ATPase_C: domain 1 of 1, from 2750 to 2770: score -0.7, E = 84
*->qeWtyeqRkaLeytcyTAFFi<-*
q++ + qR +L++ c + FF+
tem12gi|31 2750 QQLEEAQRVILQAKCKGYFFV 2770
vwa: domain 12 of 12, from 2683 to 2809: score 35.7, E = 2.1e-09
*->vrtEikfklndyqnkdevlqalqkiryedyyggggtnTgaALqyvvr
v++E f+l dy +k+++ + l++ + +++ g +g+A+ y+++
tem12gi|31 2683 VKVE--FSLTDYGSKEKLVDFLSRGM---TQLQGTRALGSAIEYTIE 2724
nlfteasGsRiepvaeegapkvlVvlTDGrsqddpspTidirdvlnelkk
n+f a +R + + v+++lT+ + + ++ ++v+ ++k
tem12gi|31 2725 NVFESAPNPR-------DLKIVVLMLTGEVPEQQLEE---AQRVILQAKC 2764
eagvevfaiGvGnadnnnleeLreIAskpd.dhvfkvsdfeaLdtlqelL
+g+ +++G+G +n +e+ +As+p + ++ v+ +++L +e+L
tem12gi|31 2765 -KGYFFVVLGIGRKVN--IKEVYTFASEPNdVFFKLVDKSTELN--EEPL 2809
<-*
tem12gi|31 - -
FARP: domain 1 of 1, from 2804 to 2814: score 9.2, E = 0.31
*->srdkrfmRFGR<-*
++++ mRFGR
tem12gi|31 2804 LNEEPLMRFGR 2814
Tissue_fac: domain 1 of 1, from 2962 to 2979: score -1.2, E = 96
*->MatpvrprvPrPetAvartl<-*
+ ++p vPrP++A ++++
tem12gi|31 2962 --VATKPEVPRPQAAKPAAT 2979
fn3: domain 1 of 1, from 2998 to 3058: score 6.4, E = 2.2
*->dvtstsltlsWspptgngpitgYevtyRqpkngge.wneltvpgttt
++t++s+ l+W++p+ Y +t+ ++ +++ ++++ t
tem12gi|31 2998 EITENSAKLHWERPE-PPGPYFYDLTV-TSAHDQSlVLKQNLTVTD- 3041
sytltgLkPgteYevrVq<-*
++ gL +g +Y+v V+
tem12gi|31 3042 -RVIGGLLAGQTYHVAVV 3058
Barwin: domain 1 of 1, from 3062 to 3070: score 3.3, E = 6.1
*->sasnVraTYH<-*
s+VraTYH
tem12gi|31 3062 -RSQVRATYH 3070
Peptidase_C13: domain 1 of 1, from 3060 to 3110: score -0.6, E = 53
*->yisklklvlftgff..pavsNftivdepplrkplevvnqrDadLhtl
y++ ++ +++g+f++++++ ++++ p+ r+ ++++ + L +
tem12gi|31 3060 YLRSQVRATYHGSFstKKSQ--PPPPQPA-RSASSST----INLMVS 3099
wrkyqlanngsek<-*
++++ l++ ++
tem12gi|31 3100 TEPLALTE--TDI 3110
Kunitz_BPTI: domain 1 of 1, from 3111 to 3161: score 94.1, E = 2e-29
*->CslPpdtGptkcpCkggnfarywRwYYdpatgktTkCepFtYgGCgG
C lP+d+G C+ + + +wYYdp+t++ C +F+YgGCgG
tem12gi|31 3111 CKLPKDEGT----CR----DFILKWYYDPNTKS---CARFWYGGCGG 3146
NaNNFetkeeCertC<-*
N+N F +++eCe+ C
tem12gi|31 3147 NENKFGSQKECEKVC 3161
//
Start with Repeat Library (from /data/patterns/repeats-Miguel-Andrade/hmm)
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/repeats-Miguel-Andrade/hmm/repeats.hmm-lib
Sequence file: tem12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Prosite
---------------------------------------------------------
| ppsearch (c) 1994 EMBL Data Library |
| based on MacPattern (c) 1990-1994 R. Fuchs |
---------------------------------------------------------
PROSITE pattern search started: Fri Nov 10 10:04:14 2000
Sequence file: tem12
----------------------------------------
Sequence tem12gi|3127926|emb|CAA36267.1| (3176 residues):
Matching pattern PS00001 ASN_GLYCOSYLATION:
108: NMSY
116: NQTG
202: NFTS
251: NNTG
2079: NGTQ
2331: NGTT
2558: NNTA
2677: NASM
2861: NVTS
3036: NLTV
Total matches: 10
Matching pattern PS00004 CAMP_PHOSPHO_SITE:
573: KRSS
1651: RRDS
2464: KRKS
Total matches: 3
Matching pattern PS00005 PKC_PHOSPHO_SITE:
95: TYR
118: TGK
231: TLK
300: STK
492: TVR
504: TKR
635: SNK
834: SKR
910: TGK
953: SDR
1073: SDR
1190: TFR
1202: SER
1268: TTR
1290: SSK
1345: SGK
1393: TFR
1422: STR
1492: TYR
1516: TGK
1595: TVR
1697: STK
1698: TKR
1767: TQR
1884: TVR
1929: TLK
1944: SVK
2194: TGK
2382: SIK
2463: SKR
2481: TSK
2498: TFK
2601: SWR
2605: SFR
2873: TTK
2879: TTK
2886: TTK
2893: TTK
2904: SVK
2929: TVR
2983: TTK
3003: SAK
3040: TDR
3074: STK
3075: TKK
3119: TCR
3153: SQK
Total matches: 47
Matching pattern PS00006 CK2_PHOSPHO_SITE:
49: TIGE
98: TKQE
205: SLHD
231: TLKD
236: TAQD
340: SRVE
358: SSDE
385: SRAE
401: TVPE
407: SFGD
504: TKRE
527: SALD
561: SLDE
698: TKSD
834: SKRD
888: SRFD
895: SKPE
934: SRIE
1076: TRPE
1144: SGDD
1209: TREE
1253: TLIE
1290: SSKD
1291: SKDE
1330: SRIE
1348: SDDE
1393: TFRE
1534: SRIE
1552: SQDD
1595: TVRE
1631: SRPE
1654: SFQE
1668: TVYE
1737: SRLD
1755: SVED
1815: TLHD
1860: SKVD
1940: SSPD
2126: SSGE
2293: TGDD
2382: SIKD
2433: TIAE
2544: TRQE
2605: SFRD
2614: SDVD
2688: SLTD
2717: SAIE
2964: TKPE
3025: SAHD
3038: TVTD
3106: TETD
3119: TCRD
3153: SQKE
Total matches: 53
Matching pattern PS00008 MYRISTYL:
85: GNPHTE
114: GTNQTG
135: GSRAGD
176: GVEDAD
211: GNLVSC
249: GSNNTG
307: GAVKAL
316: GGELAN
380: GAQAAS
583: GNKGAD
586: GADQAE
615: GMLPGL
714: GSGLNT
716: GLNTGS
720: GSALSY
777: GASQAN
872: GTRIAV
1039: GVRSGF
1125: GSRITE
1164: GIGIGN
1166: GIGNAD
1240: GSQSAG
1511: GSPLNT
1713: GGRHAN
1827: GVTDAA
2077: GVNGTQ
2092: GVKGSR
2122: GLPGSS
2207: GAKGNK
2225: GTRGAQ
2252: GSGGAR
2254: GGARGA
2329: GLNGTT
2442: GARVAV
3045: GGLLAG
3046: GLLAGQ
3071: GSFSTK
3142: GGCGGN
3143: GCGGNE
3145: GGNENK
Total matches: 40
Matching pattern PS00009 AMIDATION:
1229: GGKR
2133: PGRR
2200: FGRR
2269: LGRK
2304: EGRR
2307: RGKK
2340: RGRR
2774: IGRK
Total matches: 8
Matching pattern PS00016 RGD:
2040: RGD
2136: RGD
2148: RGD
2154: RGD
2370: RGD
Total matches: 5
Matching pattern PS00017 ATP_GTP_A:
646: GSANVGKT
Total matches: 1
Matching pattern PS00280 BPTI_KUNITZ:
3139: FWYGGCGGNENKFGSQKEC
Total matches: 1
Total no of hits in this sequence: 168
========================================
1314 pattern(s) searched in 1 sequence(s), 3176 residues.
Total no of hits in all sequences: 168.
Search time: 00:00 min
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with Profile Search
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
Start with motif search against own library
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
argv[1]=P
argv[2]=-m /data/patterns/own/motif.fa
argv[4]=-seq tem12
***** bioMotif : Version V41a DB, 1999 Nov 11 *****
SeqTyp=2 : PROTEIN search;
>APC D-Box is the MOTIF name
>STATISTICS Total : 0 solutions in 0 sequences, 0 units; out of 1 sequences, 3176 units
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~ ~~~
Start with HMM-search search against own library
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm.lib
Sequence file: tem12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /data/patterns/own/own-hmm-f.lib
Sequence file: tem12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~ ~~~~~
L. Aravind's signalling DB
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain
[Homo sapiens]
(3176 letters)
Searching..................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
VWA Von Willebrand factor A domain 137 3e-34
FN3 Fibronectin type III domain (Protein-protein interation ... 44 2e-06
INSL Insulinase like Metallo protease domain 29 0.094
PUM Pumilio repeat RNA binding domain 28 0.17
ARM Armadillo repeat 27 0.39
ACTIN Actin ATPase/ Cytoskeletal ATPase domain 27 0.39
PX PX domain 25 1.6
CYCLIN Cyclin/TFIIB domain 25 1.8
RASGEF RAS-type GTPase GDP exchange factor 25 1.8
MYB MYB domain(HTH DNA binding domain) 24 2.0
HSF Heat Shock Factor Domain (Winged helix type DNA binding ... 25 2.3
SEC14D Sec14 related lipid binding domain 24 2.3
HISDAC Histone deacetylase domain 24 2.7
AP2 A plant specific DNA binding domain (Apetala 2 like) 24 4.0
RING RING finger domain 23 4.0
UBHYD Ubiquitin C-terminal hydrolase domain 23 4.4
DHHC Novel zinc finger domain with DHHC signature 23 6.1
PDZ PDZ domain (A protein-protein interaction domain) 23 6.5
PAP Papain/bleomycin hydrolase like domain 23 6.7
PCNA Proliferating Cell nuclear antigen like domain 23 6.9
PP2C PP2C type phosphatase domain 23 6.9
POZ Pox virus Zinc finger domain (Also called BTB domain; a... 23 7.4
RASGAP RAS-type GTPase GTP hydrolysis activating protein 23 7.4
UBA Ubiquitin pathway associated domain 23 7.5
S1 S1 RNA binding domain 23 8.5
>VWA Von Willebrand factor A domain
Length = 255
Score = 137 bits (342), Expect = 3e-34
Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 24/223 (10%)
Query: 405 FRSFGDLQEKLLPYIVGVAQRHIVLKPPTIV----TQVIEVNKRDIVFLVDGSSALGLAN 460
RS+ ++ + + + + T R ++ +D S A+ +
Sbjct: 11 KRSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKD 70
Query: 461 FNAIRDFIAK-----VIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTKREVITAVRKM 515
R + + + Q+ + + + + ++ I A++ +
Sbjct: 71 LRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGL-AQLVSQVSGNPQDHIDALKSI 129
Query: 516 KPL-DGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLD--EISQPAQEL 572
+ +AL+ R L A ++L++ + D +I Q L
Sbjct: 130 RKQEPKGNPSLQNALEMARGLL-----LPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSL 184
Query: 573 KRSSIMAFAIGNKGADQAELEEIA-----FDSSLVFIPAEFRA 610
I +G A A +E+ D S I +
Sbjct: 185 VSEKIRVKVLG-LSAQVAICKELCKATNYGDESFYKILLDETH 226
Score = 130 bits (325), Expect = 2e-32
Identities = 26/196 (13%), Positives = 57/196 (28%), Gaps = 18/196 (9%)
Query: 32 VKNGAAADIIFLVDSSWTIGEEHF-----QLVREFLYDVVKSLAVGENDFHFALVQF-NG 85
+ G +I +D S + E+ ++ ++ D V ++ NG
Sbjct: 48 YQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNG 107
Query: 86 NPHTEFLLNT-YRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQ 144
++ + + L I G + LE +
Sbjct: 108 LAQLVSQVSGNPQDHIDALKSIRKQEPKGNPS-LQNALEMAR-----GLLLPVPAHCTRE 161
Query: 145 VIVVLTDGHSKDGLAL--PSAELKSADVNVFAIGVEDADEGALKEI--ASEPLNMHMFNL 200
V++V + D + L S + V +G+ A KE+ A+ + + +
Sbjct: 162 VLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGL-SAQVAICKELCKATNYGDESFYKI 220
Query: 201 ENFTSLHDIVGNLVSC 216
+ + N
Sbjct: 221 LLDETHLKELFNEAVT 236
Score = 127 bits (318), Expect = 2e-31
Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 22/203 (10%)
Query: 630 TPEVHSNKRDIIFLLDGSANVGKTNFPYVR-----DFVMNLVNSLDIGNDNIRVGLVQFS 684
TP R +I LD S + + + R + ++ V+ N ++G++
Sbjct: 46 TPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMR 105
Query: 685 DT-PVTEFSLNT-YQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREH 742
+ ++ Q D L +R+ + +G + +AL
Sbjct: 106 NGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNP--SLQNALEMAR-----GLLLPVPAHC 158
Query: 743 VPQLLLLLTAGQSEDSY--LQAANALTRAGILTFCVGASQANKAELEQIA-----FNPSL 795
++L++ + + D Q ++L I +G S A A +++ + S
Sbjct: 159 TREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLS-AQVAICKELCKATNYGDESF 217
Query: 796 VYLMDDFSSLPALPQQLIQPLTT 818
++ D + L L + + PL
Sbjct: 218 YKILLDETHLKELFNEAVTPLPV 240
Score = 114 bits (285), Expect = 1e-27
Identities = 25/231 (10%), Positives = 69/231 (29%), Gaps = 30/231 (12%)
Query: 1194 LGTVQQVISERVTQLTREELSRLQPVLQPLPSPGVGGKRDVVFLIDGSQSAGPE------ 1247
V ++ R + ++ ++ Q G R ++ +D S++ +
Sbjct: 26 ASLVASIVEARKKRTAKKNITPYQR----------GIIRSLILTLDCSEAMLEKDLRPNR 75
Query: 1248 FQYVRTLIERLVDYLDVGFDTTRVAVIQFSD-DPKAEFLLNAHSSKDEVQNAVQRLRPKG 1306
+ V +++ +I + + ++ + R +
Sbjct: 76 HAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPK 135
Query: 1307 GRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD--EVVVPAVELKQFGV 1364
G ++ NALE + P + L++ S + D ++ L +
Sbjct: 136 GN-PSLQNALEMARGLLLPVPAH-----CTREVLIVFGSLSTTDPGDIHQTIDSLVSEKI 189
Query: 1365 APFTIARNADQEELVKISLSPE-----YVFSVSTFRELPSLEQKLLTPITT 1410
+ +A ++ + + + L L + +TP+
Sbjct: 190 RVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPV 240
Score = 97.4 bits (240), Expect = 2e-22
Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 25/215 (11%)
Query: 1639 DIVFLLDGS-----INFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQY-NSDPTDEFF 1692
++ LD S + R + ++++ + V ++ Q+G++ N
Sbjct: 55 SLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQ 114
Query: 1693 LKDFST-KRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVIT 1751
+ + +I K KG + + LE R ++ V
Sbjct: 115 VSGNPQDHIDALKSIRKQEPKGN--PSLQNALEMARGL-----LLPVPAHCTREVLIVFG 167
Query: 1752 GGKSVE--DAQDVSLALTQRGVKVFAVGV-RNIDSEEVGKIASNSATAFRVGNVQELSEL 1808
+ + D +L ++V +G+ + + A+N + + + L
Sbjct: 168 SLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHL 227
Query: 1809 SEQVLETLHDAMHETLCPGVTDAAKACNLDVILGF 1843
E E V K L V +GF
Sbjct: 228 KELFNE-------AVTPLPVNKINKGFTL-VKMGF 254
Score = 89.2 bits (219), Expect = 6e-20
Identities = 24/213 (11%), Positives = 67/213 (31%), Gaps = 27/213 (12%)
Query: 208 DIVGNLVSCV-HSSVSPERAGDTETLKDITAQDSADIIFLIDGSNNTGSVNF-----AVI 261
D G++ S V + ++ + + +I +D S + A+I
Sbjct: 20 DDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMI 79
Query: 262 LDFLVNLLEKLPIGTQQIRVGVVQFSDE-PRTMFSLDTYST-KAQVLGAVKALGFAGGEL 319
+ + ++ + + ++G++ + + + + L +++ G
Sbjct: 80 IQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGN-- 137
Query: 320 ANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDEIRYGVVA--LKQASV--F 375
++ AL+ +VL++ + ++D L +
Sbjct: 138 PSLQNALEMARGLLLPVPAH-----CTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVK 192
Query: 376 SFGLGAQAASRAELQHIAT-----DDNLVFTVP 403
GL AQ A + + D++ +
Sbjct: 193 VLGLSAQ---VAICKELCKATNYGDESFYKILL 222
Score = 88.4 bits (217), Expect = 1e-19
Identities = 20/162 (12%), Positives = 54/162 (32%), Gaps = 20/162 (12%)
Query: 1028 KDVVFLLDGSEGVRSG------FPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRT-RPEF 1080
+ ++ LD SE + ++ ++ V ++ ++ + +
Sbjct: 54 RSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVS 113
Query: 1081 YLNSYMNKQDVVNAVRQLTLL--GGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIV 1138
++ N QD ++A++ + G + ALE + ++LIV
Sbjct: 114 QVSG--NPQDHIDALKSIRKQEPKGNP-SLQNALEMARGLL-----LPVPAHCTREVLIV 165
Query: 1139 LTADRSGD--DVRNPSVVVKRGGAVPIGIGIGNADITEMQTI 1178
+ + D D+ + +G+ A + + +
Sbjct: 166 FGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLS-AQVAICKEL 206
Score = 86.5 bits (212), Expect = 5e-19
Identities = 27/183 (14%), Positives = 54/183 (28%), Gaps = 20/183 (10%)
Query: 1436 DIVFLIDSSEGVRPDGFAHIR-----DFVSRIVRRLNIGPSKVRVGVVQFSN-DVFPEFY 1489
++ +D SE + R + V ++G++ N
Sbjct: 55 SLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQ 114
Query: 1490 LKT-YRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVL 1548
+ + L +IR+ +G + ALE L + L++
Sbjct: 115 VSGNPQDHIDALKSIRKQEPKGNP--SLQNALEMARGLL-----LPVPAHCTREVLIVFG 167
Query: 1549 GGKSQD--DVSRFAQVIRSSGIV--SLGVGDRNIDRTELQTITNDP--RLVFTVREFREL 1602
+ D D+ + + S I LG+ + EL TN + + L
Sbjct: 168 SLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHL 227
Query: 1603 PNI 1605
+
Sbjct: 228 KEL 230
Score = 76.3 bits (186), Expect = 6e-16
Identities = 16/167 (9%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 831 QPESKRDILFLFDGSANLVGQ------FPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDV 884
Q R ++ D S ++ + ++ + + E + +++ + + +
Sbjct: 49 QRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGL 108
Query: 885 KVESRFDEHQSKPEILNLVKRMKIKT-GKALNLGYALDYAQRYIFVKSAGSRIEDGVLQF 943
+ + + ++ +K ++ + +L AL+ A+ + +
Sbjct: 109 -AQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLL-----LPVPAHCTREV 162
Query: 944 LVLLVAGRSSDRVD--GPASNLKQSGVVPFIFQAKNADPAELEQIVL 988
L++ + ++D D +L + + +A A +++
Sbjct: 163 LIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVL-GLSAQVAICKELCK 208
Score = 48.3 bits (114), Expect = 2e-07
Identities = 22/195 (11%), Positives = 58/195 (29%), Gaps = 27/195 (13%)
Query: 2619 DMAFILDSAETTTLFQFNE-----MKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSE 2673
+ LD +E + +Y V + +++ ++
Sbjct: 55 SLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPI------SQMGIIIMRNGL 108
Query: 2674 SVDNASMPPVKVEFSLT-DYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPN 2732
++ ++ + + + R L +A+E +
Sbjct: 109 ---------AQLVSQVSGNPQDHIDALKSI-RKQEPKGNPS-LQNALEMARGLLLPVP-A 156
Query: 2733 PRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPND 2792
+++++ + + + I + VLG+ +V I + A+ D
Sbjct: 157 HCTREVLIVFGSLS--TTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGD 214
Query: 2793 V-FFKLVDKSTELNE 2806
F+K++ T L E
Sbjct: 215 ESFYKILLDETHLKE 229
Score = 45.2 bits (106), Expect = 1e-06
Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 8/140 (5%)
Query: 2403 LAFALDTSEGVNQDTFGRMR-DVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRF- 2460
L LD SE + + R +++ + +++ ++ N + +
Sbjct: 56 LILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQV 115
Query: 2461 -ADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTP 2519
+ + L I+ + L+ A+ + R+V + F +
Sbjct: 116 SGNPQDHIDALKSIRKQEPKGNPS---LQNALEMARGLLLPVPAHC--TREVLIVFGSLS 170
Query: 2520 TRASPQLREAVLKLSDAGIT 2539
T + + + L I
Sbjct: 171 TTDPGDIHQTIDSLVSEKIR 190
Score = 37.8 bits (87), Expect = 2e-04
Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Query: 1882 SPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDT---LKVYLNKFR 1938
+P ++ ++ + ++ +++R Q P
Sbjct: 94 NPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLP 153
Query: 1939 QSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERL 1991
+ + +V+I F + D D+H+ ++L E +R +L +V + L
Sbjct: 154 VPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKEL 206
>FN3 Fibronectin type III domain (Protein-protein interation domain)
Length = 154
Score = 44.5 bits (104), Expect = 2e-06
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 2992 REVQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQ 3051
++ V +T L W+ P+ Y Y L + S H + + +T + GL+ G
Sbjct: 5 FDIHVVYVTTTEMWLDWKSPDGASEYVYHLVIESKHGSNHTSTYDKAIT---LQGLIPGT 61
Query: 3052 TYHVAV 3057
Y++ +
Sbjct: 62 LYNITI 67
Score = 40.2 bits (93), Expect = 4e-05
Identities = 14/67 (20%), Positives = 25/67 (36%), Gaps = 1/67 (1%)
Query: 2994 VQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTY 3053
V I+ S L W+ + Y + A ++ N++ VI GL + Y
Sbjct: 83 VTAVNISATSLTLIWKVSDNESSSNYTYKIHVA-GETDSSNLNVSEPRAVIPGLRSSTFY 141
Query: 3054 HVAVVCY 3060
++ V
Sbjct: 142 NITVCPV 148
>INSL Insulinase like Metallo protease domain
Length = 433
Score = 28.8 bits (64), Expect = 0.094
Identities = 16/134 (11%), Positives = 29/134 (20%), Gaps = 9/134 (6%)
Query: 660 DFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKSDI-LGHLRQLQLQGGSGLN 718
V V + V VQ P I + G
Sbjct: 214 KEVEEEVMKTFGKEEGRPVPKVQIPTEPEQIGIRFKKLKDPRIEKAYWIIGWRVPAIGKT 273
Query: 719 TGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSYLQAANALTRAGILTFCVGA 778
L V++ S + + L+ + + R I
Sbjct: 274 DYKGLL-VFSEILCGGRISVFYRELREKGLVYSYSCGDMGR-------PRDNIFIITATF 325
Query: 779 SQANKAELEQIAFN 792
N ++++ F
Sbjct: 326 PPENYEKVKKRVFE 339
Score = 25.3 bits (55), Expect = 1.4
Identities = 14/94 (14%), Positives = 27/94 (27%), Gaps = 1/94 (1%)
Query: 227 GDTETLKDITAQDSADIIF-LIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQ 285
G ET++ T + N + V + + K + V VQ
Sbjct: 177 GFEETIRKFTREKLLKFYKSFYQPRNMAVVIVGKVNPKEVEEEVMKTFGKEEGRPVPKVQ 236
Query: 286 FSDEPRTMFSLDTYSTKAQVLGAVKALGFAGGEL 319
EP + ++ A +G+ +
Sbjct: 237 IPTEPEQIGIRFKKLKDPRIEKAYWIIGWRVPAI 270
Score = 23.0 bits (49), Expect = 6.5
Identities = 7/58 (12%), Positives = 10/58 (17%), Gaps = 3/58 (5%)
Query: 2838 WFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTK 2895
G K + + K P T+P P
Sbjct: 206 VIVGKVNPKEVEEEVMKTF---GKEEGRPVPKVQIPTEPEQIGIRFKKLKDPRIEKAY 260
Score = 22.6 bits (48), Expect = 7.9
Identities = 18/158 (11%), Positives = 37/158 (23%), Gaps = 16/158 (10%)
Query: 87 PHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGS----RAGDGV 142
+ + + S I + + + L + R D +
Sbjct: 259 AYWIIGWRVPAIGKTDYKGLLVFSEILCGGRISVFYRELREKGLVYSYSCGDMGRPRDNI 318
Query: 143 PQVIVVLTDGHSKDGLALPSAELKSADVNVFAIGVEDAD-EGALKEIASEPLNMHMFNLE 201
+ + + LK + D E A I +N +F E
Sbjct: 319 FIITATFPPENYEKVKKRVFELLKET-----YENLTDEQVEEAKSRI----INSRLFEEE 369
Query: 202 NFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDITAQD 239
+ +G + V + L + D
Sbjct: 370 RVENDAFDIGYSYTVVRDLDFYRFF--DKNLSRVRRVD 405
>PUM Pumilio repeat RNA binding domain
Length = 337
Score = 28.0 bits (62), Expect = 0.17
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 31/142 (21%)
Query: 2689 LTDYGS---KEKLVDFLSRGMTQL----QGTRALGSAIEYTIENVFESAPNPRDLKIVVL 2741
L DY + K L+ + + Q+ GTR+L I+ N + +++
Sbjct: 68 LCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDT--------VDNEVQIDLIIK 119
Query: 2742 MLTGEVP----------EQQLEE-AQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEP 2790
+ E + Q+ I + + F++ I + N + T ++
Sbjct: 120 GFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNN---IITISTHK 176
Query: 2791 N--DVFFKLVDKSTELNEEPLM 2810
+ V KL+ T +
Sbjct: 177 HGCCVLQKLLSVCTLQQIFKIS 198
>ARM Armadillo repeat
Length = 532
Score = 26.9 bits (59), Expect = 0.39
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 1 MRKHRHLPLVAVFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVRE 60
+ ++ + C +S + Q Q V+ + ++ L+ ++ F + +E
Sbjct: 335 LTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNA------EFDIKKE 388
Query: 61 FLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLN--TYRTKQEVLSHISNMSYIGGTNQ 117
+ + + + G +D LV+ LL R L + N+ +G +
Sbjct: 389 AAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEK 447
>ACTIN Actin ATPase/ Cytoskeletal ATPase domain
Length = 376
Score = 26.8 bits (59), Expect = 0.39
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 22/43 (51%)
Query: 2570 AGRDLTDFLENVLT----------------------CHVCLDI 2590
AGRDLTD L +LT +V LD
Sbjct: 182 AGRDLTDHLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDY 224
>PX PX domain
Length = 158
Score = 24.9 bits (54), Expect = 1.6
Identities = 17/148 (11%), Positives = 42/148 (27%), Gaps = 23/148 (15%)
Query: 1559 FAQVIRSSGIVSLGVGDR-NIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSA 1617
F + I G + + + ++ ++V+ R+F E+ + + F A
Sbjct: 5 FIRHIALLGFEKRFIPSQHYVYMFLVKWQDLSEKVVY--RKFTEIYEFHKMLKEMFPIEA 62
Query: 1618 ATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSF-----QEVLRFVSEIVDTVYED 1672
E + ++ L F + + + ++ +
Sbjct: 63 G-----------EIHTENR---VIPHLPAPRWFDGQRAAESRQGTLTEYFNGLMGLPVKI 108
Query: 1673 GDSIQVGLVQYNSDPTDEFFLKDFSTKR 1700
+ L + P D D K+
Sbjct: 109 SRCPHL-LDFFKVRPDDLKLPTDSQAKK 135
Score = 22.5 bits (48), Expect = 8.2
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 1888 SVVANTPSGPVEAFD--FDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSV 1945
V+ + P P E + L ++ N P ++ L F + PD +
Sbjct: 70 RVIPHLP-APRWFDGQRAAESRQGTLTEYFNGLMGLPVKISRCPH---LLDFFKVRPDDL 125
Query: 1946 KVV 1948
K+
Sbjct: 126 KLP 128
>CYCLIN Cyclin/TFIIB domain
Length = 317
Score = 24.6 bits (53), Expect = 1.8
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPK--------ASQHFARVAVVQHA 2670
++ T L Q ++ K + LV++ + + H A +A+
Sbjct: 226 LSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVIT 285
Query: 2671 PSESVDNASMPPVKVEFSLTDYGSKEKLVDFL 2702
K + + + LV+ L
Sbjct: 286 KKRKGYEDDDYVSKKSKHEEEEWTDDDLVESL 317
>RASGEF RAS-type GTPase GDP exchange factor
Length = 196
Score = 24.8 bits (54), Expect = 1.8
Identities = 8/24 (33%), Positives = 12/24 (49%)
Query: 195 MHMFNLENFTSLHDIVGNLVSCVH 218
H +NF +L +I+ L S V
Sbjct: 96 DHCRTFQNFNTLMEIILALSSSVV 119
>MYB MYB domain(HTH DNA binding domain)
Length = 122
Score = 24.5 bits (53), Expect = 2.0
Identities = 6/52 (11%), Positives = 11/52 (20%)
Query: 2509 RKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINALQINNT 2560
R + R R I + +E+ +I
Sbjct: 38 RTLPKNAGTCLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSFLGN 89
>HSF Heat Shock Factor Domain (Winged helix type DNA binding domain)
Length = 112
Score = 24.5 bits (53), Expect = 2.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 1459 VSRIVRRLNI-GPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1505
S +R+LN G KV +F+N+ F Q +L I+R
Sbjct: 52 FSSFIRQLNTYGFRKVDPDRWEFANEGF-------LGGQKHLLKTIKR 92
>SEC14D Sec14 related lipid binding domain
Length = 248
Score = 24.5 bits (53), Expect = 2.3
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 1901 FDFDEYQPEMLEKFRNMRSQHPYV---LTEDTLKVYLNKFRQSSPDSVKVVIHFTDGADG 1957
F+ E+L + N R Q+P + L+ + ++ + V+ D G
Sbjct: 36 FNVGRAY-ELLRGYVNFRLQYPELFDSLSPEAVRCTIEAG-------YPGVLSSRD-KYG 86
Query: 1958 -----DLADLHRASENLRQEGVRALILVGLERVV 1986
+ ++ E E ++A + LE+++
Sbjct: 87 RVVMLFNIENWQSQEITFDEILQAYCFI-LEKLL 119
>HISDAC Histone deacetylase domain
Length = 433
Score = 24.1 bits (52), Expect = 2.7
Identities = 13/87 (14%), Positives = 30/87 (33%), Gaps = 11/87 (12%)
Query: 275 GTQQIRVGVVQFSDEPRTMF-SLDTYSTKAQVLGAVKALGFAGGELANIGLAL-DFVVEN 332
G ++ F R M S Y G ++ +G G+ + + L D + +
Sbjct: 192 GVEEA------FYTTDRVMTCSFHKYGEFFPGTGELRDIGVGAGKNYAVNVPLRDGIDDA 245
Query: 333 HFTRAGGSRVEEGVPQV---LVLISAG 356
+ +++ + V++ G
Sbjct: 246 TYRSVFEPVIKKIMEWYQPSAVVLQCG 272
>AP2 A plant specific DNA binding domain (Apetala 2 like)
Length = 218
Score = 23.6 bits (50), Expect = 4.0
Identities = 3/34 (8%), Positives = 15/34 (43%)
Query: 3061 LRSQVRATYHGSFSTKKSQPPPPQPARSASSSTI 3094
+ S+ ++ S ++++ +P + + +
Sbjct: 2 IASESTKSWEASAVRQENEEEKKKPVKDSGKHPV 35
>RING RING finger domain
Length = 48
Score = 23.4 bits (50), Expect = 4.0
Identities = 5/23 (21%), Positives = 9/23 (38%), Gaps = 2/23 (8%)
Query: 2376 QCALIQSIKDKCPCCYGPLECPV 2398
C +++ +CP C P
Sbjct: 24 GC--LEASGMQCPICQAPWPLGA 44
Score = 23.4 bits (50), Expect = 5.1
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 2386 KCPCCYGPLECPVF 2399
+C C +CP
Sbjct: 1 RCQQCQAEAKCPKL 14
>UBHYD Ubiquitin C-terminal hydrolase domain
Length = 884
Score = 23.5 bits (50), Expect = 4.4
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 2628 ETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEF 2687
+ T+L + E+K + ++ D+S D + +V DN+ +P K F
Sbjct: 510 QDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYF 569
>DHHC Novel zinc finger domain with DHHC signature
Length = 217
Score = 22.8 bits (48), Expect = 6.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 2897 VTIINQPSVKPAAAK---PAPAKPVAAKP 2922
+ I N+PS K A K APA+P P
Sbjct: 4 MNICNKPSNKTAPEKSVWTAPAQPSGPSP 32
>PDZ PDZ domain (A protein-protein interaction domain)
Length = 90
Score = 22.9 bits (49), Expect = 6.5
Identities = 9/48 (18%), Positives = 14/48 (28%)
Query: 2167 RGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGG 2214
+ G LG G + + + G F P + K G
Sbjct: 4 EFGQVRRGLLGIKGGELNADLAKAFNVSAQQGAFVSEVLPKSAAEKAG 51
>PAP Papain/bleomycin hydrolase like domain
Length = 376
Score = 22.7 bits (48), Expect = 6.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1887 VSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQH 1921
V+ +A GP+ A D E+ E F+ + Q
Sbjct: 15 VAGLAQGIRGPLRAQDLGPQPLELKEAFKLFQIQF 49
>PCNA Proliferating Cell nuclear antigen like domain
Length = 280
Score = 22.9 bits (49), Expect = 6.9
Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 1350 DEVVVPAVELKQFGVAPFTIARNADQ-EELVKISLSPE-YVFSVSTFRELPSLEQKLLTP 1407
+++++ + L++ D ++++I++SP+ F +STF +
Sbjct: 154 NKIILQSEGLRE-------AFSELDMTGDVLQITVSPDKPYFRLSTFGNAGNSHLDYPKD 206
Query: 1408 ITTLTSEQIQKLLAST 1423
+ + K +
Sbjct: 207 SDLVEAFHCNKTQVNR 222
Score = 22.5 bits (48), Expect = 8.8
Identities = 5/21 (23%), Positives = 8/21 (37%)
Query: 1933 YLNKFRQSSPDSVKVVIHFTD 1953
L ++ S KV I +
Sbjct: 227 LLKPSTKALALSCKVSIRTDN 247
>PP2C PP2C type phosphatase domain
Length = 254
Score = 23.0 bits (49), Expect = 6.9
Identities = 6/85 (7%), Positives = 23/85 (27%), Gaps = 12/85 (14%)
Query: 1277 SDDPKAEFLLNAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNI----FKRPLGSRI 1332
+ + E + H+ + + P + + + + + +
Sbjct: 131 LRNQQLERVTEDHTWVARAL-KMGDIDPAQAKVHPWRHV---LFQCLGRQDLNFIEVEAL 186
Query: 1333 EEGVPQFLVLISSG----KSDDEVV 1353
+ ++ S G D+ +
Sbjct: 187 DAQPGDTFMMCSDGLTEEVPDNLIE 211
>POZ Pox virus Zinc finger domain (Also called BTB domain; a protein-protein interaction domain)
Length = 229
Score = 22.8 bits (48), Expect = 7.4
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 12 VFCLFLSGFPTTHAQQQQADVKNGAAADIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAV 71
L+ T ++ + L+D +HF + +L D +L
Sbjct: 41 TTVRALTRHDTMLKAMFSGRMEVLTDKEGWILID----RCGKHFGTILNYLRDDTITLPQ 96
Query: 72 GENDFH--FALVQFNGNPH-----TEFLLNTYRTKQEVL 103
+ A ++ L + + Q V
Sbjct: 97 NRQEIKELMAEAKYYLIQGLVNMCQSALQDKKDSYQPVC 135
>RASGAP RAS-type GTPase GTP hydrolysis activating protein
Length = 292
Score = 22.8 bits (48), Expect = 7.4
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 1739 LDQRVPQIAFVITGGKSVEDAQDVSLALTQ--RGVKVFAVGVRNIDSEEVGKIASNSATA 1796
+DQR ++ V G+ V +V+ L + + A ++ + E+ + ++ T
Sbjct: 35 VDQRPITVSAVSILGELVSGKTEVAQPLVRLFTHTERIAPIIKALADHEISHL-TDPTTI 93
Query: 1797 FRVGNVQELSELSEQV-LETLHDAMHETLCPGVTDAA---KACNLDVILGFDGSR-DQNV 1851
FR GN + E + L LH +H+TL P ++ K C +D D S D N+
Sbjct: 94 FR-GNTLVSKMMDEAMRLSGLH-YLHQTLRPVLSQIVAEKKPCEIDPSKIKDRSAVDTNL 151
Query: 1852 FVAQKGFESKVDAILNRISQMHRV---------SCSGGRSPT---VRVSVVA 1891
Q E +AI + +V C+G P+ VR SVV+
Sbjct: 152 HNLQDYVERVFEAITKSADRCPKVLCQIFHDLRECAGEHFPSNREVRYSVVS 203
>UBA Ubiquitin pathway associated domain
Length = 255
Score = 22.7 bits (48), Expect = 7.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 2216 GQPGFEGEQGTRGAQGPAGPAGPPGLIG 2243
G G GT G A GPPG IG
Sbjct: 102 GGNASSGALGTTGGATDAAQGGPPGSIG 129
>S1 S1 RNA binding domain
Length = 305
Score = 22.6 bits (48), Expect = 8.5
Identities = 12/127 (9%), Positives = 33/127 (25%), Gaps = 20/127 (15%)
Query: 947 LVAGRSSDRVDGPASNLKQSGVVPFIFQAKNADPAELE-QIVLSPAFILAAESLPKIGDL 1005
+ D + + Q + A+ + + + G++
Sbjct: 141 FIPRSHLMHKDNMDALVGQVLKAHIL----EANQDNNKLVLTQRRIQQAESMGKIAAGNI 196
Query: 1006 HPQIVNLLKSVHNGAPAPVSGEKDVVFL-LDGSEGVRSGFPLLKEFVQRVVESLDVGQDR 1064
+ + + VF+ ++G G+ + V + G
Sbjct: 197 ---YEGKVAKI----------QPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFG-QA 242
Query: 1065 VRVAVVQ 1071
+ V V +
Sbjct: 243 ISVYVQE 249
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 105
Number of sequences better than 10.0: 25
Number of calls to ALIGN: 43
Length of query: 3176
Total length of test sequences: 20182
Effective length of test sequences: 15939.0
Effective search space size: 49975505.9
Initial X dropoff for ALIGN: 25.0 bits
Y. Wolf's SCOP PSSM
IMPALA version 1.1 [20-December-1999]
Reference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting,
Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999),
"IMPALA: Matching a Protein Sequence Against a Collection of
"PSI-BLAST-Constructed Position-Specific Score Matrices",
Bioinformatics 15:1000-1011.
Query= tem12gi|3127926|emb|CAA36267.1| collagen type VI, alpha 3 chain
[Homo sapiens]
(3176 letters)
Searching.................................................done
Results from profile search
Score E
Sequences producing significant alignments: (bits) Value
gi|420193 [185..357] Integrin A (or I) domain 145 1e-35
gi|2582830 [161..353] Integrin A (or I) domain 144 2e-35
gi|2645090 [1..155] Integrin A (or I) domain 135 1e-32
gi|417325 [120..385] S-adenosyl-L-methionine-dependent methy... 30 0.70
gi|155099 [19..420] S-adenosyl-L-methionine-dependent methyl... 29 1.3
gi|2635679 [5..214] NAD(P)-binding Rossmann-fold domains 29 1.4
gi|886067 [7..235] beta-Roll 28 1.7
gi|2688351 [1..345] NAD(P)-binding Rossmann-fold domains 28 2.1
gi|126848 [26..185] Four-helical up-and-down bundle 28 2.2
gi|1805705 [1..215] NAD(P)-binding Rossmann-fold domains 28 2.4
gi|1477763 [233..705] Lipoxigenase, C-terminal domain 28 3.0
gi|2285879 [10..385] ATP-grasp 28 3.1
gi|2499489 [82..349] Phosphofructokinase 28 3.3
gi|999515 [1..176] NAD(P)-binding Rossmann-fold domains 27 3.3
gi|2500974 [303..458] Anticodon-binding (C-terminal) domain ... 27 3.7
gi|2506153 [10..236] NAD(P)-binding Rossmann-fold domains 27 4.1
gi|1168958 [24..474] Citrate synthase 27 4.4
gi|68234 [34..414] Citrate synthase 27 4.5
gi|116909 [47..259] S-adenosyl-L-methionine-dependent methyl... 27 4.8
gi|797337 [17..308] Periplasmic binding protein-like I 27 5.3
gi|2688670 [455..688] beta-Lactamase/D-ala carboxypeptidase 27 5.3
gi|1894762 [59..322] Periplasmic binding protein-like I 27 5.5
gi|133162 [12..305] 5' to 3' exonuclease 26 7.6
gi|436861 [24..196] Four-helical up-and-down bundle 26 7.9
gi|1169087 [44..365] Cysteine proteinases 26 9.0
gi|2635757 [51..326] Periplasmic binding protein-like II 26 9.2
gi|1123081 [41..288] Ribonuclease H-like motif 26 9.3
gi|1943833 [45..314] Metallo-dependent phosphatases 26 9.4
gi|1815643 [227..431] Metzincin-like 26 9.9
gi|1361319 [558..735] Aldehyde oxidoreductase, molybdemum co... 26 9.9
>gi|420193 [185..357] Integrin A (or I) domain
Length = 173
Score = 145 bits (363), Expect = 1e-35
Identities = 36/174 (20%), Positives = 70/174 (39%), Gaps = 7/174 (4%)
Query: 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVG-----ENDFHFALVQFNGNPHTEFLL 93
DI+FL+D S +GE++F VR F+ DV + L + + AL+Q+ +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 94 NTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGH 153
+ + +Y+ + G G+ + + ++ + A A V LTDG
Sbjct: 61 PLTYNVTTIHEALERATYLNSFSHVGTGIVHAIN-NVVRGARGGARRHAELSFVFLTDGV 119
Query: 154 SKDG-LALPSAELKSADVNVFAIGVEDADEGALKEIASEPLNMHMFNLENFTSL 206
+ + L ++ +V + V + + S +F ++F SL
Sbjct: 120 TGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173
Score = 123 bits (308), Expect = 3e-29
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGND-----NIRVGLVQFSDTPVTEFSL 693
DI+FLLDGS +G+ NF VR FV ++ L + N R+ L+Q+ + +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 694 NTYQTKSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAG 753
+ I L + + G+ + + N A G R H + LT G
Sbjct: 61 PLTYNVTTIHEALERATYLNS-FSHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 754 QSEDSYLQ-AANALTRAGILTFCVG-ASQANKAELEQIA-FNPSLVYLMDDFSSL 805
+ + L+ + +++ + ++ V + L +I+ + + ++ DF SL
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173
Score = 109 bits (271), Expect = 6e-25
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 1233 DVVFLIDGSQSAGPE-FQYVRTLIERLVDYLDVGFD-----TTRVAVIQFSDDPKAEFLL 1286
D+VFL+DGS+ G + F VR +E + L + R+A++Q+ + +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 1287 NAHSSKDEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSG 1346
+ + A++R +VG + + N+ + G V ++ G
Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 1347 KSDDEVVVPAV-ELKQFGVAPFTIA--RNADQEELVKISL-SPEYVFSVSTFREL 1397
+ ++ + +V +++ V P +A + D + L KISL +F F L
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173
Score = 108 bits (268), Expect = 1e-24
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQD-----LIQVAVAQYADTVRPEFYF 499
DIVFL+DGS LG NF+ +R F+ V +RL + + ++A+ QY + + F
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 500 NTHPTKREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGG 559
+ A+ + L+ + + G+ + NN+ + G V +T G
Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 560 KSL-DEISQPAQELKRSSIMAFAIG-NKGADQAELEEIA-FDSSLVFIPAEFRA 610
+ D + + +++ +++ + D L +I+ D + +F +F +
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDS 172
Score = 100 bits (249), Expect = 2e-22
Identities = 30/175 (17%), Positives = 67/175 (38%), Gaps = 12/175 (6%)
Query: 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGT-----QQIRVGVVQFSDEPRTMFSL 296
DI+FL+DGS G NF + F+ ++ +L + R+ ++Q+ + + +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 297 DTYSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAG 356
+ A++ + +++G + + N A G V ++ G
Sbjct: 61 PLTYNVTTIHEALERATYLNSF-SHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 357 PS-SDEIRYGVVALKQA--SVFSFGLGAQAASRAELQHIATDDN-LVFTVPEFRS 407
+ +D + V ++++ +G L I+ D +F +F S
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVG-GDVDMDVLTKISLGDRAAIFREKDFDS 172
Score = 99.0 bits (244), Expect = 9e-22
Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 18/173 (10%)
Query: 1029 DVVFLLDGSEGV-RSGFPLLKEFVQRVVESLDVGQD-----RVRVAVVQYSDRTRPEFYL 1082
D+VFLLDGSE + F ++ FV+ V L + + R+A++QY + + +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 1083 NSYMNKQDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTAD 1142
N + A+ + T L + + G + + N++ + G + LT
Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 1143 RSGDD-VRNPSVVVKRGGAVPIGIGIG-NADITEMQTIS--------FIPDFA 1185
+G+D + +++ VP + +G + D+ + IS DF
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFD 171
Score = 98.2 bits (242), Expect = 2e-21
Identities = 36/176 (20%), Positives = 67/176 (37%), Gaps = 12/176 (6%)
Query: 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIG-----PSKVRVGVVQFSNDVFPEFYL 1490
DIVFL+D SE + F +R FV + RRL + P R+ ++Q+ + +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 1491 KTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGG 1550
+ + +A+ R + G + N+ + G V + G
Sbjct: 61 PLTYNVTTIHEALERATYLNSF-SHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 1551 KS-QDDVSRFAQVIRSSGI--VSLGVGDRNIDRTELQTITN-DPRLVFTVREFREL 1602
+ D + +R + + VG ++D L I+ D +F ++F L
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGG-DVDMDVLTKISLGDRAAIFREKDFDSL 173
Score = 92.7 bits (228), Expect = 8e-20
Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 10/175 (5%)
Query: 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTV-----YEDGDSIQVGLVQYNSDPTDEFFL 1693
DIVFLLDGS +F +V RFV ++ + +D + ++ L+QY S +
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 1694 KDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGG 1753
I +A+ + Y ++ G+ H N G + +T G
Sbjct: 61 PLTYNVTTIHEALERATYLNSF-SHVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 1754 KSVEDA-QDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSAT--AFRVGNVQEL 1805
+ D+ ++ ++ ++ V V V +V S FR + L
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDRAAIFREKDFDSL 173
Score = 84.2 bits (206), Expect = 3e-17
Identities = 32/162 (19%), Positives = 62/162 (37%), Gaps = 9/162 (5%)
Query: 837 DILFLFDGSANLVGQ-FPVVRDFLYKIIDEL-----NVKPEGTRIAVAQYSDDVKVESRF 890
DI+FL DGS L Q F VR F+ + L + P R+A+ QY + + F
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAF 60
Query: 891 DEHQSKPEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAG 950
+ I ++R + ++G + +A + + G V L G
Sbjct: 61 PLTYNVTTIHEALERATYLNSFS-HVGTGIVHAINNVVRGARGGA-RRHAELSFVFLTDG 118
Query: 951 RS-SDRVDGPASNLKQSGVVPFIFQAKNADPAELEQIVLSPA 991
+ +D ++ ++++ VVP + ++ +
Sbjct: 119 VTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGD 160
Score = 80.3 bits (196), Expect = 5e-16
Identities = 30/177 (16%), Positives = 67/177 (36%), Gaps = 10/177 (5%)
Query: 2403 LAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNC-PTGARVAVVTYNNEVTTEIRFA 2461
+ F LD SE + + F ++R V + LT+A + P AR+A++ Y ++ ++ F
Sbjct: 2 IVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAFP 61
Query: 2462 DSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNG--FLMRKVAVFFSNTP 2519
+ + + + ++ + + T + N + R G VF ++
Sbjct: 62 LTYNVTTIHEALERATYL--NSFSHVGTGIVHAINNVVRGARGGARRHAELSFVFLTDGV 119
Query: 2520 TRASPQLREAVLKLSDAGITPLFL--TRQEDRQLINALQINNTAVGHALVLPAGRDL 2574
T + L E+V + + P + D ++ + + + L
Sbjct: 120 T-GNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTKISLGDR--AAIFREKDFDSL 173
Score = 68.6 bits (166), Expect = 1e-12
Identities = 27/186 (14%), Positives = 67/186 (35%), Gaps = 13/186 (6%)
Query: 2619 DMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNA 2678
D+ F+LD +E F+++++++ + R+L ++ AR+A++Q+
Sbjct: 1 DIVFLLDGSERLGEQNFHKVRRFVEDVSRRLTLARRDD-DPLNARMALLQYGSQ------ 53
Query: 2679 SMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRDLKI 2738
+ + + + + + L R T L +G+ I + I NV A
Sbjct: 54 ----NQQQVAFPLTYNVTTIHEALER-ATYLNSFSHVGTGIVHAINNVVRGARGGARRHA 108
Query: 2739 VVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLV 2798
+ + + + + + + V+ +G V++ + S +
Sbjct: 109 ELSFVFLTDGVTGNDSLEESVHSMRKQNVVPTVVAVGGDVDMDVLTK-ISLGDRAAIFRE 167
Query: 2799 DKSTEL 2804
L
Sbjct: 168 KDFDSL 173
Score = 36.3 bits (83), Expect = 0.007
Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 15/162 (9%)
Query: 1838 DVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGP 1897
D++ DGS + ++ F + + ++ ++ R++++ S
Sbjct: 1 DIVFLLDGSER----LGEQNFHKVRRFVEDVSRRL-TLARRDDDPLNARMALLQYG-SQN 54
Query: 1898 VEAFDFDEYQ--PEMLEKFRNMRSQHPYVLTEDTLK-VYLNKFRQSS----PDSVKVVIH 1950
+ F + E + + + N R + + +
Sbjct: 55 QQQVAFPLTYNVTTIHEALERATYLNSFSHVGTGIVHAINNVVRGARGGARRHAELSFVF 114
Query: 1951 FTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERLM 1992
TDG L + ++R++ V +V + V+++ L
Sbjct: 115 LTDG-VTGNDSLEESVHSMRKQNVV-PTVVAVGGDVDMDVLT 154
>gi|2582830 [161..353] Integrin A (or I) domain
Length = 193
Score = 144 bits (362), Expect = 2e-35
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 17/190 (8%)
Query: 39 DIIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRT 98
DI+ ++D S +I ++ V FL +++++ +G +VQ+ EF LNTY T
Sbjct: 2 DIVIVLDGSNSIYP--WESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 99 KQEVLSHISNMSYIGGT-NQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDG 157
+EV+ + GGT T G++ + T+A G+R GV +V+V++TDG S D
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGARR--GVQKVMVIVTDGESHDN 117
Query: 158 --LALPSAELKSADVNVFAIGV----------EDADEGALKEIASEPLNMHMFNLENFTS 205
L + + ++ FAI + + +K IAS+P H FN+ + +
Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177
Query: 206 LHDIVGNLVS 215
L IV L
Sbjct: 178 LVTIVEALGE 187
Score = 124 bits (310), Expect = 2e-29
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 639 DIIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQT 698
DI+ +LDGS ++ + V F+ +L+ ++DIG +VG+VQ+ T V EF LNTY T
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 699 KSDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDS 758
+++ +++ +GG+ T + FTEA G+ R V ++++++T G+S D+
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGA--RRGVQKVMVIVTDGESHDN 117
Query: 759 --YLQAANALTRAGILTFCVG----------ASQANKAELEQIA--FNPSLVYLMDDFSS 804
+ + I F + +++ E++ IA + + D +
Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177
Query: 805 LPALPQQLIQPLTT 818
L + + L + +
Sbjct: 178 LVTIVEALGERIFA 191
Score = 112 bits (279), Expect = 7e-26
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 1639 DIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFST 1698
DIV +LDGS + ++ V F++ ++ + QVG+VQY EF+L +ST
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 1699 KRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKS--V 1756
+++DA ++ +GG T +G++ R F G+R + V ++ ++T G+S
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117
Query: 1757 EDAQDVSLALTQRGVKVFAVGVRN----------IDSEEVGKIAS--NSATAFRVGNVQE 1804
Q+V ++ FA+ + EE+ IAS F V +
Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177
Query: 1805 LSELSEQVLETL 1816
L + E + E +
Sbjct: 178 LVTIVEALGERI 189
Score = 112 bits (279), Expect = 8e-26
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)
Query: 1233 DVVFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSK 1292
D+V ++DGS S ++ V + L+ +D+G T+V ++Q+ EF LN +S+
Sbjct: 2 DIVIVLDGSNSIY-PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYSTT 60
Query: 1293 DEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDDE- 1351
+EV +A R+R +GG Q ++ F G+R GV + +V+++ G+S D
Sbjct: 61 EEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDNY 118
Query: 1352 -VVVPAVELKQFGVAPFTIA--RNADQEELVKISLSPE-----------YVFSVSTFREL 1397
+ + + + F IA + + L E + F+VS L
Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELAL 178
Query: 1398 PSLEQKLLTPITTL 1411
++ + L I L
Sbjct: 179 VTIVEALGERIFAL 192
Score = 111 bits (276), Expect = 2e-25
Identities = 46/168 (27%), Positives = 84/168 (49%), Gaps = 7/168 (4%)
Query: 445 DIVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPT 504
DIV ++DGS+++ + ++ F+ +++ ++IG QV + QY TV EFY NT+ T
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 505 KREVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLDE 564
EV+ A +++ G+ T +D R FT + G R G+ K++V++T G+S D
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117
Query: 565 --ISQPAQELKRSSIMAFAIG-NKGADQAELEEIAFDSSLVFIPAEFR 609
+ + + + +I FAI + L F + I ++
Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPT 165
Score = 110 bits (274), Expect = 3e-25
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 242 DIIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYST 301
DI+ ++DGSN+ + + FL +LL + IG QQ +VG+VQ+ F L+TYST
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 302 KAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSDE 361
+V+ A + GG L +D E FT A G+R GV +V+V+++ G S D
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117
Query: 362 IRYGVVAL----KQASVFSFGLGAQA--------ASRAELQHIAT--DDNLVFTVPEFRS 407
R V + F+ + E++ IA+ + F V + +
Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177
Query: 408 FGDLQEKLLPYI 419
+ E L I
Sbjct: 178 LVTIVEALGERI 189
Score = 108 bits (268), Expect = 2e-24
Identities = 49/190 (25%), Positives = 88/190 (45%), Gaps = 18/190 (9%)
Query: 1436 DIVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRS 1495
DIV ++D S + + + F++ ++R ++IGP + +VG+VQ+ V EFYL TY +
Sbjct: 2 DIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYST 59
Query: 1496 QAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQD- 1554
V+DA R+R RGG+ T ++ F ++ G+R GV + +V+V G+S D
Sbjct: 60 TEEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDN 117
Query: 1555 -DVSRFAQVIRSSGI--VSLGVGDRN--------IDRTELQTITNDP--RLVFTVREFRE 1601
+ I ++ + E+++I + P + F V +
Sbjct: 118 YRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELA 177
Query: 1602 LPNIEERIMN 1611
L I E +
Sbjct: 178 LVTIVEALGE 187
Score = 108 bits (268), Expect = 2e-24
Identities = 40/194 (20%), Positives = 84/194 (42%), Gaps = 17/194 (8%)
Query: 1029 DVVFLLDGSEGVRSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNK 1088
D+V +LDGS + + + F+ ++ ++D+G + +V +VQY EFYLN+Y
Sbjct: 2 DIVIVLDGSNSIY-PWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYSTT 60
Query: 1089 QDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRSGD-- 1146
++V++A ++ GG T ++ + G+R GV ++++++T S D
Sbjct: 61 EEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDNY 118
Query: 1147 DVRNPSVVVKRGGAVPIGIGIGN----------ADITEMQTIS--FIPDFAVAIPTFRQL 1194
++ + I I + E+++I+ + L
Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSDELAL 178
Query: 1195 GTVQQVISERVTQL 1208
T+ + + ER+ L
Sbjct: 179 VTIVEALGERIFAL 192
Score = 90.4 bits (222), Expect = 4e-19
Identities = 31/157 (19%), Positives = 67/157 (41%), Gaps = 6/157 (3%)
Query: 837 DILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSK 896
DI+ + DGS + + + V FL ++ +++ P+ T++ + QY V E + + +
Sbjct: 2 DIVIVLDGSNS-IYPWESVTAFLNSLLRNMDIGPQQTQVGIVQYGQTVVHEFYLNTYSTT 60
Query: 897 PEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSD-- 954
E+++ R++ + G +D A+ F ++ G+R GV + +V++ G S D
Sbjct: 61 EEVMDAALRIRQRGGTQTMTALGIDTAREEAFTEAHGAR--RGVQKVMVIVTDGESHDNY 118
Query: 955 RVDGPASNLKQSGVVPFIFQ-AKNADPAELEQIVLSP 990
R+ + + F + L
Sbjct: 119 RLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVE 155
Score = 69.0 bits (167), Expect = 1e-12
Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 31/207 (14%)
Query: 2618 IDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDN 2677
+D+ +LD + + + + ++ L+R +D+ P +V +VQ+ +
Sbjct: 1 LDIVIVLDGSNSIY--PWESVTAFLNSLLRNMDIGPQQ------TQVGIVQYGQT----- 47
Query: 2678 ASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRA-LGSAIEYTIENVFESAPNPRDL 2736
V EF L Y + E+++D R + Q GT+ I+ E F A R
Sbjct: 48 -----VVHEFYLNTYSTTEEVMDAALR-IRQRGGTQTMTALGIDTAREEAFTEAHGARRG 101
Query: 2737 KIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVN---------IKEVYTFA 2787
V+++ + Q VI + + + + I + ++E+ + A
Sbjct: 102 VQKVMVIVTDGESHDNYRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIA 161
Query: 2788 SEPNDVFFKLVDKSTELNE--EPLMRF 2812
S+P + F V L E L
Sbjct: 162 SKPTEKHFFNVSDELALVTIVEALGER 188
Score = 57.7 bits (138), Expect = 2e-09
Identities = 28/193 (14%), Positives = 60/193 (30%), Gaps = 18/193 (9%)
Query: 2402 ELAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRFA 2461
++ LD S + + + + S++ + I P +V +V Y V E
Sbjct: 2 DIVIVLDGSNSIYP--WESVTAFLNSLLRNMDIG----PQQTQVGIVQYGQTVVHEFYLN 55
Query: 2462 DSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNG-FLMRKVAVFFSNTPT 2520
++D ++ Q + F ++KV V ++ +
Sbjct: 56 TYSTTEEVMDAALRIRQRG-GTQTMTALGIDTAREEAFTEAHGARRGVQKVMVIVTDGES 114
Query: 2521 RASPQLREAVLKLSDAGITPLFL------TRQEDRQLINALQINNTA----VGHALVLPA 2570
+ +L+E + K D I + +R +I + A H +
Sbjct: 115 HDNYRLQEVIDKCEDENIQRFAIAILGSYSRGNLSTEKFVEEIKSIASKPTEKHFFNVSD 174
Query: 2571 GRDLTDFLENVLT 2583
L +E +
Sbjct: 175 ELALVTIVEALGE 187
Score = 39.8 bits (92), Expect = 7e-04
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 23/159 (14%)
Query: 1837 LDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSG 1896
LD+++ DGS + + F ++++L + +V +V
Sbjct: 1 LDIVIVLDGSNSIYPWESVTAF---LNSLLRNMDIG---------PQQTQVGIVQYG-QT 47
Query: 1897 PVEAFDFDEYQ--PEMLEKFRNMRSQHPYVLT------EDTLKVYLNKFRQSSPDSVKVV 1948
V F + Y E+++ +R Q T + + + + KV+
Sbjct: 48 VVHEFYLNTYSTTEEVMDAALRIR-QRGGTQTMTALGIDTAREEAFTEAHGARRGVQKVM 106
Query: 1949 IHFTDGADGDLADLHRASENLRQEGVRALILVGLERVVN 1987
+ TDG D L + E ++ + + +
Sbjct: 107 VIVTDGESHDNYRLQEVIDKCEDENIQ-RFAIAILGSYS 144
>gi|2645090 [1..155] Integrin A (or I) domain
Length = 155
Score = 135 bits (337), Expect = 1e-32
Identities = 39/158 (24%), Positives = 79/158 (49%), Gaps = 10/158 (6%)
Query: 40 IIFLVDSSWTIGEEHFQLVREFLYDVVKSLAVGENDFHFALVQFNGNPHTEFLLNTYRTK 99
++FL+DSS ++G+E+F ++EF+ +V + V +++F+ + L+ ++T
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 100 QEVLSHISNMSYIGG-TNQTGKGLEYIMQSHLTKAAGSRAGDGVPQVIVVLTDGHSKDG- 157
+++L+ I ++ Y G + K LE M+ ++ G R + +V+L DG +
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 158 ----LALPSAELKSADVNVFAIGV-EDADEGALKEIAS 190
L L A V + IG+ + D L++IA+
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
Score = 127 bits (318), Expect = 2e-30
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 640 IIFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTK 699
++FLLD S +VG NF +++FV ++V + D+ N R+G+++F L+ ++T
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 700 SDILGHLRQLQLQGGSGLNTGSALSYVYANHFTEAGGSRIREHVPQLLLLLTAGQSEDSY 759
D+L + ++ G AL F+E G R + L+LL GQ+
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAM-EAFSEKNGG--RADATKALVLLADGQNSFIE 117
Query: 760 -----LQAANALTRAGILTFCVG-ASQANKAELEQIA 790
+ L A + + +G + + ELE IA
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154
Score = 110 bits (274), Expect = 3e-25
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 1640 IVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTK 1699
++FLLD S + ++F ++ FV IV D ++G+++++SD L D T
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 1700 RQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKS---- 1755
+ +++ I+ + Y G LE F + G R + ++ G++
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAM-EAFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 1756 -VEDAQDVSLALTQRGVKVFAVGV-RNIDSEEVGKIAS 1791
+D + L V + +G+ R +D +E+ IA+
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
Score = 110 bits (274), Expect = 3e-25
Identities = 31/157 (19%), Positives = 74/157 (46%), Gaps = 9/157 (5%)
Query: 446 IVFLVDGSSALGLANFNAIRDFIAKVIQRLEIGQDLIQVAVAQYADTVRPEFYFNTHPTK 505
++FL+D S ++G NF+ +++F+ ++ ++ L ++ + ++ + H T
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 506 REVITAVRKMKPLDGSALYTGSALDFVRNNLFTSSAGYRAAEGIPKLLVLITGGKSLD-- 563
++++ + ++ +G AL+ F+ G R K LVL+ G++
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAM-EAFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 564 ---EISQPAQELKRSSIMAFAIG-NKGADQAELEEIA 596
++++ + L + + + IG + D ELE+IA
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154
Score = 104 bits (258), Expect = 3e-23
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 243 IIFLIDGSNNTGSVNFAVILDFLVNLLEKLPIGTQQIRVGVVQFSDEPRTMFSLDTYSTK 302
++FL+D S + G NF + +F+ +++ + Q R+G+++F + + L + T
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 303 AQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAGPSSD-- 360
+L + ++ + G I AL+ +E F+ G R + LVL++ G +S
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 361 ---EIRYGVVALKQA--SVFSFGLGAQAASRAELQHIAT 394
++ + L A + G+G + EL+ IAT
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIG-RELDLKELEDIAT 155
Score = 102 bits (254), Expect = 7e-23
Identities = 34/157 (21%), Positives = 66/157 (41%), Gaps = 10/157 (6%)
Query: 1030 VVFLLDGSEGV-RSGFPLLKEFVQRVVESLDVGQDRVRVAVVQYSDRTRPEFYLNSYMNK 1088
++FLLD S V F +KEFV+ +V + DV R+ ++++ L+ +
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 1089 QDVVNAVRQLTLLGGPTPNTGAALEFVLRNILVSSAGSRITEGVPQLLIVLTADRS--GD 1146
+D++N + + G ALE G R + L++L ++ +
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERA-MEAFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 1147 DVRNPSVVVKR---GGAVPIGIGIG-NADITEMQTIS 1179
++ + +K IGIG D+ E++ I+
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154
Score = 102 bits (254), Expect = 7e-23
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 1234 VVFLIDGSQSAGPE-FQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEFLLNAHSSK 1292
++FL+D S S G E F ++ ++ +V DV TR+ +I+F D + L+ H +
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 1293 DEVQNAVQRLRPKGGRQINVGNALEYVSRNIFKRPLGSRIEEGVPQFLVLISSGKSDD-- 1350
++ N + +R G Q + ALE F G R + LVL++ G++
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERA-MEAFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 1351 ---EVVVPAVELKQFGVAPFTIA--RNADQEELVKIS 1382
++ L V + I R D +EL I+
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIA 154
Score = 102 bits (253), Expect = 9e-23
Identities = 39/157 (24%), Positives = 74/157 (46%), Gaps = 11/157 (7%)
Query: 1437 IVFLIDSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQ 1496
++FL+DSS V + F +++FV IV ++ R+G+++F +D L +++
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 1497 APVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQD-- 1554
+L+ I +R G KALE A F + G R + LVL+ G++
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALER-AMEAFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 1555 ---DVSRFAQVIRSSGI--VSLGVGDRNIDRTELQTI 1586
D++ + + + + +G+G +D EL+ I
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGR-ELDLKELEDI 153
Score = 88.4 bits (217), Expect = 2e-18
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 838 ILFLFDGSANLVGQ-FPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVESRFDEHQSK 896
+LFL D S ++ + F +++F+ I+ +V + TRI + ++ D ++ + +H++
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLTRIGIIRFDSDAEIIIQLSDHKTL 60
Query: 897 PEILNLVKRMKIKTGKALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSD-- 954
++LN + ++ G + AL+ A F + G R + LVLL G++S
Sbjct: 61 KDLLNDIDSIRYNEGIQTRIDKALERAME-AFSEKNGGR--ADATKALVLLADGQNSFIE 117
Query: 955 ---RVDGPASNLKQSGVVPF-IFQAKNADPAELEQI 986
++ L + V + I + D ELE I
Sbjct: 118 GSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDI 153
Score = 62.3 bits (150), Expect = 1e-10
Identities = 29/170 (17%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 2622 FILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMP 2681
F+LDS+ + F++MK+++ +V D+ R+ +++
Sbjct: 3 FLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQL------TRIGIIRFDSD--------- 47
Query: 2682 PVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRA-LGSAIEYTIENVFESAPNPRDLKIVV 2740
++ L+D+ + + L++ + + +G + + A+E +E E D +
Sbjct: 48 -AEIIIQLSDHKTLKDLLNDIDS-IRYNEGIQTRIDKALERAMEAFSEKNGGRADATKAL 105
Query: 2741 LMLTGEVPE--QQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFAS 2788
++L + ++ + F V+GIGR++++KE+ A+
Sbjct: 106 VLLADGQNSFIEGSQDLNEELKPLIDAKVFRYVIGIGRELDLKELEDIAT 155
Score = 56.9 bits (136), Expect = 5e-09
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Query: 2403 LAFALDTSEGVNQDTFGRMRDVVLSIVNVLTIAESNCPTGARVAVVTYNNEVTTEIRFAD 2462
+ F LD+S V + F +M++ V SIV + R+ ++ ++++ I+ +D
Sbjct: 1 MLFLLDSSGSVGDENFDKMKEFVKSIVLNFDVDNQLT----RIGIIRFDSDAEIIIQLSD 56
Query: 2463 SKRKSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFL-MRKVAVFF----SN 2517
K LL+ I +++ Q ++ A+ A F G K V ++
Sbjct: 57 HKTLKDLLNDIDSIRYN-EGIQTRIDKALER-AMEAFSEKNGGRADATKALVLLADGQNS 114
Query: 2518 TPTRASPQLREAVLKLSDAGIT 2539
+ L E + L DA +
Sbjct: 115 FIEGSQD-LNEELKPLIDAKVF 135
Score = 36.2 bits (83), Expect = 0.008
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 21/162 (12%)
Query: 1839 VILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPV 1898
++ D S V + F+ + + + + + + + +
Sbjct: 1 MLFLLDSSGS----VGDENFDKMKEFVKSIVLNFD----VDNQLTRIGIIRFDSDAE--- 49
Query: 1899 EAFDFDEYQ--PEMLEKFRNMR-SQHPYVLTEDTLKVYLNKF---RQSSPDSVKVVIHFT 1952
+++ ++L ++R ++ + L+ + F D+ K ++
Sbjct: 50 IIIQLSDHKTLKDLLNDIDSIRYNEGIQTRIDKALERAMEAFSEKNGGRADATKALVLLA 109
Query: 1953 DGA---DGDLADLHRASENLRQEGVRALILVGLERVVNLERL 1991
DG DL+ + L V ++G+ R ++L+ L
Sbjct: 110 DGQNSFIEGSQDLNEELKPLIDAKVF-RYVIGIGRELDLKEL 150
>gi|417325 [120..385] S-adenosyl-L-methionine-dependent methyltransferases
Length = 266
Score = 29.6 bits (66), Expect = 0.70
Identities = 8/73 (10%), Positives = 14/73 (18%)
Query: 2313 RGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGD 2372
+ K N + L G + + G R
Sbjct: 156 YNLTEFKKTKSNINKASLIGYSKFNSEGYVYDPEFTGPTLTASGANSRIKIKDGSNIRKM 215
Query: 2373 SIDQCALIQSIKD 2385
+ D+ L
Sbjct: 216 NSDETFLYIGFDS 228
>gi|155099 [19..420] S-adenosyl-L-methionine-dependent methyltransferases
Length = 402
Score = 28.7 bits (63), Expect = 1.3
Identities = 24/251 (9%), Positives = 59/251 (22%), Gaps = 20/251 (7%)
Query: 2593 IDPSCGFGSW-RPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDM 2651
++P+C G + R V +++ L + E L +
Sbjct: 24 LEPACADGPFLRAFREAHGTGYRFVGVEI-----DPHALDLPPWAEGVVADFLLWEPGEA 78
Query: 2652 SPDPKASQHFARVAVVQ-HAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQ 2710
+ + V + + + T G F+ + + L+
Sbjct: 79 FDLILGNPPYGIVGEASKYPIHVLREVKGLYKKT---LSTWKGKYNLYGAFIEKSVRLLR 135
Query: 2711 GTRALGSAIEYTIENVFESAPNPRDL----KIVVLMLTGEVPEQQLEEAQRVILQAKCKG 2766
L + T + + + L + V L P +++ +
Sbjct: 136 EGGTLVFVVPATWLVLDDFSLLRSFLAREGRTEVYYLGEVFPGRKVSAVVLRFRKGGKGL 195
Query: 2767 YFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAF 2826
+ G ++ ++ E +
Sbjct: 196 ALWDTRRDGETFTPLLWSEKPEWKGEIIRF---ETGWTREMEASGPPLGSLFHIPFA--- 249
Query: 2827 YLSPDIRKQCD 2837
SP+ +K
Sbjct: 250 ARSPEFKKHPA 260
>gi|2635679 [5..214] NAD(P)-binding Rossmann-fold domains
Length = 210
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/130 (11%), Positives = 34/130 (25%), Gaps = 1/130 (0%)
Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL 1808
+ITG Q ++L ++G +V A+ D Q+ L
Sbjct: 1 IITGASKG-LGQAIALQALEKGHEVHALSRTKTDVSHKKLTQHQIDLINLEEAEQQFETL 59
Query: 1809 SEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAILNR 1868
+ + + G+ K + N+ + +
Sbjct: 60 LSSIDSDRYSGITLINNAGMVTPIKRAGEASLDELQRHYQLNLTAPVLLSQLFTKRFASY 119
Query: 1869 ISQMHRVSCS 1878
+ V+ +
Sbjct: 120 SGKKTVVNIT 129
>gi|886067 [7..235] beta-Roll
Length = 229
Score = 28.5 bits (63), Expect = 1.7
Identities = 28/114 (24%), Positives = 37/114 (31%), Gaps = 7/114 (6%)
Query: 2101 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP 2160
G +G G +G D G G G +G G G+ + GD GN
Sbjct: 1 GGQGSNSLFGSNGDDIMLDPTGDDWIDGRAGRDSISAGEGNDRVFGGVGNDHVFGDEGND 60
Query: 2161 ---GQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGN 2211
G + LG D + GGPG+ G GR G G+
Sbjct: 61 YLYGDLGRGNPRIPAPAILG----ADNDKLYGGPGDDSLFAGDGRDSLTGGAGH 110
>gi|2688351 [1..345] NAD(P)-binding Rossmann-fold domains
Length = 345
Score = 28.2 bits (61), Expect = 2.1
Identities = 15/171 (8%), Positives = 36/171 (20%), Gaps = 6/171 (3%)
Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL 1808
+TG V+ L ++G +V + D E+ + ++
Sbjct: 4 FLTGIAG-FIGFHVAKKLVEKGHEVLGI-DVLNDYYELKFKHERLEALGFCSKDVKTHKI 61
Query: 1809 SEQVLETLHDAMHETLC--PGVTDAAKACNLDVILGFDGSRDQNVFVAQ--KGFESKVDA 1864
+ + + + + K + + +
Sbjct: 62 IKSEKYNNLSFAYLDILNKDKLLELFKDHKFTHVCHLAAQAGIRDSLENPDSYVSINIVG 121
Query: 1865 ILNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFR 1915
N + + S V + D P L
Sbjct: 122 FFNVLDVCRVYKENIEHFVYASTSSVYGINENMPSSEDSITDHPLNLYAAS 172
>gi|126848 [26..185] Four-helical up-and-down bundle
Length = 160
Score = 28.1 bits (62), Expect = 2.2
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 751 TAGQSEDSYLQAANALTRAGILTFCVGASQANKA---ELEQIAFNPSLVY---LMDDFSS 804
+S LQA N+L RAGI + A EL A L +
Sbjct: 27 LLSESRVDLLQARNSLNRAGIRYMMDTNKIGSGATIDELLAKAEKEKLARAERNYTAYEK 86
Query: 805 LPALPQQLIQ 814
+P P+Q Q
Sbjct: 87 IPQDPRQDPQ 96
>gi|1805705 [1..215] NAD(P)-binding Rossmann-fold domains
Length = 215
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/141 (10%), Positives = 32/141 (22%), Gaps = 7/141 (4%)
Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATA----FRVGNVQE 1804
VITG + + + + A + V +
Sbjct: 7 VITGANRG-IGLGLVQEFVKDKNIRHIIATARDVEKATDLKAISDPRVTALQLEVTCDKS 65
Query: 1805 LSELSEQVLETLHDAMHETL--CPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKV 1862
+ +V E + L G F + N + +
Sbjct: 66 MDTFVSKVEEIVGSDGLNLLVNNAGNAVDYPCKAKPNRALFAEQLNVNTTSVVILTQKLM 125
Query: 1863 DAILNRISQMHRVSCSGGRSP 1883
++ S++ S R+
Sbjct: 126 PLLIKASSKVSGDQLSASRAA 146
>gi|1477763 [233..705] Lipoxigenase, C-terminal domain
Length = 473
Score = 27.5 bits (61), Expect = 3.0
Identities = 10/72 (13%), Positives = 22/72 (29%), Gaps = 14/72 (19%)
Query: 1660 RFVSEIVDTVYEDGDSIQ--------------VGLVQYNSDPTDEFFLKDFSTKRQIIDA 1705
F + ++ Y D + G + F T + +ID
Sbjct: 292 NFSRDYINLYYSDDSRVAGDSELGRFFNQLSADGTGTDGGIGMFKGFPAKIETIQDLIDV 351
Query: 1706 INKVVYKGGRHA 1717
+ ++V+ +H
Sbjct: 352 VKRIVFIPVQHH 363
Score = 26.0 bits (57), Expect = 9.6
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 16/72 (22%)
Query: 641 IFLLDGSANVGKTNFPYVRDFVMNLVNSLDIGNDNIRVGLVQFSDTPVTEFSLNTYQTKS 700
+++++ S +N + + N+ D ++ S P+ F
Sbjct: 83 VYIVEFSYLYDLSNVEDLTE-----RNTTDRRE-------MRGSRAPICTF----VSANV 126
Query: 701 DILGHLRQLQLQ 712
+ L+ + +Q
Sbjct: 127 GGVRELKPVAIQ 138
>gi|2285879 [10..385] ATP-grasp
Length = 376
Score = 27.6 bits (61), Expect = 3.1
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 32/152 (21%)
Query: 980 PAELEQIVLSPAFILAAESLPKIGDLHPQIVNLLKSVHNGAPAPVSGEKDVVFLLDGSEG 1039
P+ L ++ + + ++GD LL S+ +GA + G D V L ++
Sbjct: 60 PSGLWDEIIEGLNWVQQDMGARLGD---PEKPLLVSLRSGAAVSMPGMMDTVLNLGLNDE 116
Query: 1040 VRSG----------FPLLKEFVQ---RVVESLD-------VGQDRVRVAVVQYSDRTRPE 1079
V +G + + F+ VV + + + + V +D + +
Sbjct: 117 VVAGLAKKSGERFAYDSYRRFIDMFSDVVMGIPHEHFGEKLEEMKATKGVKNDTDLSADD 176
Query: 1080 F------YLNSYMN---KQDVVNAVRQLTLLG 1102
Y Y + + ++QL+L
Sbjct: 177 LKELVVQYKEVYAKAKGEPFPTDPMKQLSLAV 208
>gi|2499489 [82..349] Phosphofructokinase
Length = 268
Score = 27.5 bits (61), Expect = 3.3
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 1501 DAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFA 1560
D I R +GG + + F ++ + + + LV++ G S + A
Sbjct: 55 DYIHPYRNQGGFDMICSGRDKIETPEQFKQAEETAGKLDL-NGLVVIGGDDSNTNACLLA 113
Query: 1561 Q--VIRSSGIVSLGVG---DRNIDRTELQT 1585
+ ++ +G D ++ E+ T
Sbjct: 114 ENFRSKNLKTRVIGCPKTIDGDLKCKEVPT 143
>gi|999515 [1..176] NAD(P)-binding Rossmann-fold domains
Length = 176
Score = 27.4 bits (60), Expect = 3.3
Identities = 23/89 (25%), Positives = 42/89 (46%), Gaps = 9/89 (10%)
Query: 407 SFGDLQEKLLPYIVGVAQRHIVLKPPTIVTQVIEVNK-RDIVFLVDGSSALGLANFNAIR 465
+F K+ ++ A+ VL ++ V ++ K R I+ LV A+
Sbjct: 30 AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG--------QAVD 81
Query: 466 DFIAKVIQRLEIGQDLIQVAVAQYADTVR 494
+FI K++ L+IG +I ++Y DT+R
Sbjct: 82 NFIEKLVPLLDIGDIIIDGGNSEYRDTMR 110
>gi|2500974 [303..458] Anticodon-binding (C-terminal) domain of glutamyl-tRNA synthetase
Length = 156
Score = 27.2 bits (60), Expect = 3.7
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 831 QPESKRDILFLFDGSANLVGQFPVVRDFLY---KIIDELNVK---PEGTRIAVAQYSDDV 884
P +L + + + + D + +E K + ++ ++
Sbjct: 34 NPTQLDRLLDALKERSQTLKELALKIDEVLIAPVEYEEKVFKKLNQALVMPLLEKFKLEL 93
Query: 885 KVESRFDEHQSKPEILNLVKRMKIKTGKA 913
+ DE + + +++ KIK G
Sbjct: 94 NKANFNDESALENAMRQIIEEEKIKAGSF 122
>gi|2506153 [10..236] NAD(P)-binding Rossmann-fold domains
Length = 227
Score = 27.4 bits (59), Expect = 4.1
Identities = 14/133 (10%), Positives = 36/133 (26%), Gaps = 10/133 (7%)
Query: 1749 VITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL 1808
+ITGG ++ + V + + + A +
Sbjct: 1 LITGGGRR-IGLALAWHFINQKQPVIVSYRTHYPAIDGLINAGAQCIQADFSTNDGVMAF 59
Query: 1809 SEQVLETLH--DAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAIL 1866
+++VL++ H A+ + + A DV+ + + A+
Sbjct: 60 ADEVLKSTHGLRAILHNASAWMAEKPGAPLADVL-------ACMMQIHVNTPYLLNHALE 112
Query: 1867 NRISQMHRVSCSG 1879
+ +
Sbjct: 113 RLLRGHGHAASDI 125
>gi|1168958 [24..474] Citrate synthase
Length = 451
Score = 27.2 bits (60), Expect = 4.4
Identities = 19/84 (22%), Positives = 29/84 (33%), Gaps = 20/84 (23%)
Query: 2691 DYGSK---EKLVDFLSRGMTQLQGTRALGSAIE---------YTIENVFESAP------- 2731
YGS + + GM Q G++++ TIE P
Sbjct: 27 CYGSTFVGPITISSVLGGMRGNQSMFWQGTSLDPEHGIKFQGLTIEECQNRLPNTGIDGD 86
Query: 2732 NPRDLKIVVLMLTGEVP-EQQLEE 2754
N ++ L++TG VP QQ
Sbjct: 87 NFLPESMLWLLMTGGVPTFQQAAS 110
>gi|68234 [34..414] Citrate synthase
Length = 381
Score = 27.2 bits (60), Expect = 4.5
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 2721 YTIENVFESAPNPRDLKIVVLMLTGEVP-EQQLEE 2754
Y IE + A L+ L+L GE+P Q E+
Sbjct: 39 YPIE---QLAEKSDYLETCYLLLNGELPTAAQKEQ 70
>gi|116909 [47..259] S-adenosyl-L-methionine-dependent methyltransferases
Length = 213
Score = 26.8 bits (58), Expect = 4.8
Identities = 15/131 (11%), Positives = 37/131 (27%), Gaps = 7/131 (5%)
Query: 1875 VSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYV--LTEDTLKV 1932
+ G S ++ P + + + + ++ N V L + +
Sbjct: 62 LGAYCGYSAVRMARLLQ--PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL 119
Query: 1933 YLNKFRQSSPDSVKVVI-HFTDGADGDLADLHRASENLRQEGVRALILVGLERVVNLERL 1991
++ D++ +V L LR+ V L+ + + L
Sbjct: 120 IPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV--LLADNVIVPGTPDFL 177
Query: 1992 MHLEFGRGFMY 2002
++ F
Sbjct: 178 AYVRGSSSFEC 188
>gi|797337 [17..308] Periplasmic binding protein-like I
Length = 292
Score = 26.9 bits (59), Expect = 5.3
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 1235 VFLIDGSQSAGPEFQYVRTLIERLVDYLDV-GFDTTRVAVIQFSDDPKAEF-LLNAHSSK 1292
V L + E VR L+ + VD L + ++ V + + + LL+
Sbjct: 34 VILATSDEDIALERDAVRVLLAKRVDGLIISPTSSSEVDHLISASERDCPVVLLDRRVPV 93
Query: 1293 DEV-----------QNAVQRLRPKGGRQI 1310
AV+ L +G R +
Sbjct: 94 LRADTFAVDNFGAAYEAVKSLIGQGHRNV 122
>gi|2688670 [455..688] beta-Lactamase/D-ala carboxypeptidase
Length = 234
Score = 26.8 bits (59), Expect = 5.3
Identities = 15/146 (10%), Positives = 43/146 (29%), Gaps = 19/146 (13%)
Query: 2774 IGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPL---------MRFGRLLPSFVSSEN 2824
I ++ +++S+ + + T PL ++ R +S
Sbjct: 75 ILDRLGFDSAISYSSKLLGITDPKEIEKTFPKVYPLALGVISVSPIQMARAFAILGNSG- 133
Query: 2825 AFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPV-TTTKPV 2883
+ P + + G T ++ ++ + + + + + T +
Sbjct: 134 -SEIEPYGIRYIEDRAGRIITN-------EEASILAKIKNKEHQTQIVSPQTAYIITDMM 185
Query: 2884 TTTTKPVTTTTKPVTIINQPSVKPAA 2909
+T + T + T + A
Sbjct: 186 KSTIQYGTLANQRYTNLKNFKSDIAG 211
>gi|1894762 [59..322] Periplasmic binding protein-like I
Length = 264
Score = 26.8 bits (59), Expect = 5.5
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 1235 VFLIDGSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKAEF---LLNAHS- 1290
+ + + E +Y++T + V + + + + P L A S
Sbjct: 34 LIFGNSDEELKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPSV 93
Query: 1291 ---SKDEVQNAVQRLRPKGGRQI 1310
V+ A Q + ++I
Sbjct: 94 SSDGYTGVKLAAQAIIHGKSQRI 116
>gi|133162 [12..305] 5' to 3' exonuclease
Length = 294
Score = 26.4 bits (58), Expect = 7.6
Identities = 9/99 (9%), Positives = 17/99 (17%), Gaps = 4/99 (4%)
Query: 1442 DSSEGVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLD 1501
D + V F R + + + Y L
Sbjct: 186 DKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLV 245
Query: 1502 AIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGV 1540
I + + + + G V
Sbjct: 246 LIDFDYI---PDNIASNIVNYYNS-YKLPPRGKIYSYFV 280
>gi|436861 [24..196] Four-helical up-and-down bundle
Length = 173
Score = 26.1 bits (57), Expect = 7.9
Identities = 11/58 (18%), Positives = 21/58 (35%), Gaps = 4/58 (6%)
Query: 299 YSTKAQVLGAVKALGFAGGELANIGLALDFVVENHFTRAGGSRVEEGVPQVLVLISAG 356
+ T++ A + GG G ++ +E A S + EG ++ L
Sbjct: 118 FLTESGNESAKHGVQIFGG----HGFIIEHGMEQIVRDARISTLYEGTTEIQSLDLLA 171
>gi|1169087 [44..365] Cysteine proteinases
Length = 322
Score = 26.2 bits (57), Expect = 9.0
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 3119 TCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVC 3161
C+ + + P + + C + +CEK C
Sbjct: 159 GCKPYP----FPPCEHHSKKTHFDPCPHDLYPT---PKCEKKC 194
>gi|2635757 [51..326] Periplasmic binding protein-like II
Length = 276
Score = 26.1 bits (57), Expect = 9.2
Identities = 21/184 (11%), Positives = 54/184 (28%), Gaps = 36/184 (19%)
Query: 772 LTFCVGASQANKAELEQIAFNPSLVYLMDDFSSLPALPQQ-LIQPLTTYVSGGVEEVPLA 830
+ + S +K ++ +P +Y + L++Y + +
Sbjct: 17 IEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYK---NDTDWS 73
Query: 831 Q--PESKRDILFLFDGSANLVGQFPVVRDFLYKIIDELNVKPEGTRIAVAQYSDDVKVES 888
+S+ ++ G P + Y+ D+ +
Sbjct: 74 SQLVQSQITPFT-YEN--KQYG-VPWQM---------------DAKSFF--YNKDIFQKL 112
Query: 889 RFDEHQSKPEILNLVKRMKIKTGKALNLG---------YALDYAQRYIFVKSAGSRIEDG 939
D ++ E++++ K++K ++ G Y QR + K+
Sbjct: 113 NLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAK 172
Query: 940 VLQF 943
+F
Sbjct: 173 TGEF 176
>gi|1123081 [41..288] Ribonuclease H-like motif
Length = 248
Score = 26.0 bits (57), Expect = 9.3
Identities = 3/26 (11%), Positives = 7/26 (26%), Gaps = 3/26 (11%)
Query: 2561 AVGHA---LVLPAGRDLTDFLENVLT 2583
+ + GR L + +
Sbjct: 20 TMLNEFESARSICGRQLERRVREQME 45
>gi|1943833 [45..314] Metallo-dependent phosphatases
Length = 270
Score = 26.0 bits (57), Expect = 9.4
Identities = 4/34 (11%), Positives = 13/34 (37%), Gaps = 2/34 (5%)
Query: 202 NFTSLHDIVGNLVSCVHSSVSPERAGDTETLKDI 235
+ S ++ + + C+ P + L+ +
Sbjct: 140 SMMSAAAVIDSKILCMPGGPGPTI--REKGLQKL 171
>gi|1815643 [227..431] Metzincin-like
Length = 205
Score = 26.1 bits (57), Expect = 9.9
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 84 NGNPHTEFLLNTYRTKQEVLSHISNMSYIGGTNQTGKGLEYIMQSHLTKAAGS 136
G N Q + H+ + + E +M+ + G
Sbjct: 121 KGVEQFATHWNGELLAQS-IGHLLGLEHDTTACSCEPSPECVMRQQPGRVGGG 172
>gi|1361319 [558..735] Aldehyde oxidoreductase, molybdemum cofactor-binding domain
Length = 178
Score = 26.1 bits (57), Expect = 9.9
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 2/85 (2%)
Query: 2436 ESNCPTGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVA 2495
ES V + + A + D + A Q + A
Sbjct: 49 ESTATHKKGVGISIGVYGSGLDGPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTA 108
Query: 2496 RNTFKRVRNGFLMRKVAVFFSNTPT 2520
+ + G K+ + NT T
Sbjct: 109 HEALRPM--GVAPEKIKFTWPNTAT 131
Underlying Matrix: BLOSUM62
Number of sequences tested against query: 1187
Number of sequences better than 10.0: 30
Number of calls to ALIGN: 64
Length of query: 3176
Total length of test sequences: 256703
Effective length of test sequences: 200348.0
Effective search space size: 626882523.3
Initial X dropoff for ALIGN: 25.0 bits