Promoter predictions for seq : from bold to bold:

1      GAATTGCTGAGAAGTTGCATCAGCAAGAGGGGCAAGGTCAGACAGGATTT
51     GAGGCCGCCAGGGGCACCTAAGCTGTGGGTGCAGAGAATGGGATGCAGAG
101    GTAGAGACAAGAAGGGTAGAGGTGGCAGGTATCCCTGATAAGGGGGAGAC
151    CATGGGTTCATCCTGGGATTCCACCCTCAGAGTCAGATGCCCTTGGGATC
201    ACCGACTAATGCCTCTCCACCTCACTCTGGACTGCCCAAGGAATCTGTCC
251    TGTGCTACCCACAGTGCAGATTGCAACAGGGCTCCTCCTCCCCACCCAGG
301    GCCCTGATTAAGGGGATGGATTGCACACTGTAGTGAGACATCCATCCTGA
351    CCCCACCTCATCAGCCAGGGAGCTCCCTGAAGACAGGCCATCGAGAGAGG
401    CACACAACAGGCTGTGGTCTAAAATAAACTTTTAATTGCACATTTGTGTC
451    TTGGGTTATCTGTGGGGTGAGAAACCTCCTCACTTCCAATCCCAGCTATC
501    TGGGTACAATCTGGTGTTGTGGTCTGGCTGTCGGCGAGGGGTAGAGGTGG
551    GTGCAGGACTGGCCCCCGAGTCTGCACCGACCTCTTCAGGGCAGGGAGCT
601    CAGACCTGGGAAGGGAGGGGCAGCACAGGCTGGTGGTCAGCCTGCAGGTG
651    CAAGAGGAGGGTTGGCCTCTCCCCCTCCCGGCCTGAGTCGGGGTCCACTC
701    ACTCACCATGGTAGTACTTGCACTGCTTCAGGGCCTCGCTGAAGCCCTCA
751    CACAGGGACAGGTCACTCTGAGTGGTGGAACAGTCCAGGAACTGCCTGAT
801    CTCATAGGCGCAGGGCCCCATCTGCAGGGGCTGGGGGGCAGCGGGGGTGG
851    GGGCCTGGGGGTACAGTGCAAGAGGCTGCAGGATCAGCTTGGAGTTGGCA
901    CCTGGAGGTGCGTTTCAAACCTGGGGCCACCTGCCCCTCCCCACATCCCC
951    AGCCTGGGTGTCCCAAGGGTCCTAGGCAGGCTGAGTGATCCAGCAGCAGA
1001   GGCGGCTACAGACAGCATGTTTCTGCTGCCTTTTTTTTTTTTTTTTTTGA
1051   GACAGAGTCTCACTCTGTCACCTAGAGTGGAGTGCAGCGGCGCAGTCTCG
1101   GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGGTTGTCCTGCCTCGGC
1151   CTCCCAAGTAGCTGGGGCTACAGGCGCCCGCCACCATGCCCAACAAATTT
1201   TTTGTATTTTTAGTAGAGAGGGGGTTTCACTATGTTGGCCAGGCTGGTAT
1251   CGAACTCCTGAACTCATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGG
1301   ATTACAGGCATGAGCCACTGCGCCTGGCCTCTGCTGCCTTCTAATGGGCA
1351   CTTTGGGCGGGTGCAGGGGAGGGAGGAGAAGGCTCTAGGAAAGCCCAGTA
1401   CTCTGCCTGTACTCTCAGAGTATGAGCCCCACCCCCACAAGTTCTAGCAC
1451   CTTCCTGGCTCAGCTACACTAATCCTCATGACCCCTGACCTAGCCACAAA
1501   GCCACATTTGGCTTACGGCGGTGGGGTTCCTAGCAGGGGAAAGGTCATCA
1551   GGGAAGTGGCTCCCCTTCGCCCTTGCGCCCAGCGGCCACAGTGCCCAGAC
1601   CTGGGTGTGGGGAGAACAGGGGCTCAGGAAATCCAACATCCCTCCCCTCT
1651   GCTAGGGTGAGGTGACCTTGGGCGAGTCTCTGAGCCCTCAGGGCCTGGGT
1701   TTCCCATCTTTAAAGGGCTGGTTGGTGTCTCTCCCTGGGAGCTTAGGGAC
1751   CCTGGCCTCAAGGGAGAGGCCGGGAAGCCTGCCTCTAAGTGACAGTGAAC
1801   TCAAGACCAGTGGACTAGGACCCTTCCCGGGCAGAGTCCTGGGCTGAAGC
1851   AACGGTGAATACACGCGGACACTCCTCACTGGACACTTGGGCAGCTCCCT
1901   GTGTGGCCTCGAGATAATCCTGCCTCAGTTTCTCTTGGACCCGCTGCTCA
1951   CCTGCTGGACAGCAGGCTGGGAGGGCTCCGAGCTCCCCCCGCTGAAGGCT
2001   CCGGTCAGGGCGCTGCCCATGACGTGTCCCACAGCCGAGCCCACGGCTAC
2051   CCCTGCGGCCGTGGTCGCCATCTGAGCCATGAGCCCCGGCTGGCCCGAAG
2101   GGGCGGGGGCTGGGGCGGCTGCCGAGGGCGGTGGGTGCGCGGGCGGGTGG
2151   GCAGAGGGCGCGGCGGGGCGGCTGCGGGGGTGGGAGGAAGCAGGGTTAAT
2201   CCTGGCCAGACCCCAGGCTGGAGGGCTGCAGCTCCTGGAAACGACCCCCG
2251   GAGAGATGGACGACCCACGTCTCCACACGTGGGTGCTGCACCCCCACCCC
2301   TCCCCCCGCCAAGATGGCGCAGCAGCAGCCAAGGTCACTCTGCGGACGCC
2351   CTTAGGGGAGTGCCCACACTTCCCTAACCCCCTCCCCACAGGGCCCTTGT
2401   CCCCCTCACACCTGGCTGGCCGGGAGGCCGCGCTGCGGCTTCCCCGAGGC
2451   ATGGTGGCGGCGGTGGGACCCGGGCGACCTTAGAGACGGCGGCAGCGGTG
2501   CTGTCGCGGGGACAAATGCCGCAGCGCTTGTCACAGCCGGCGCAAAAAAG
2551   GCGGGGCCCCGGGCGGGGCCTCAGGAACACGCCCCCAGCGGGAGGCGGCA
2601   CTGCCCCCAACCCTATCCCCCTTCTCCCGTCCTCCGGACATCTCCCTTCC
2651   AGCAGCTCCGGGTCTCGGCTGGAAATGGGACCCTGCTCCCTCCCTGCGCC
2701   TGGCAGGCTGTGCGGGTTCTGGGGACAGGGGCCAGTGTCGCAAAGCGCCG
2751   AGGGCTTAAGGAGGGCGACAGTGCCTTCTGTTAGGACCACCGCAGAGGGC
2801   AGGGAGCGGAGTTGGGGGTTGTTGCGAGCCCTGGAGGGGAGAGGAGACGG
2851   GGAGGCGACGGGATGGGGCCAGCTGGGAAGGGGACGCGAGGCTCCAGGCT
2901   GGACTCCGCTCTCTGCCCCCTCCCGGACTCGGCTGTCTGTCCCCTCCCTC
2951   CAGACAGGGTCTGCTGACCACCGCGTGGCCTGGGAGTCTCCGGTGGCCTA
3001   GGGAAGTGAAGCGCGGCCCTGGGGAAGGCCTGGAGCAACCCATCCCCAGA
3051   ACTCCCACGAGGGGGCGTCCCAACCCGTCTTCGACTGTTGGCCAAAATGC
3101   GCTGCCAATGCTGGCAGCCTTACGCAGTGCCCGCGGGGGATATGAGGCCC
3151   CCCGCGCGGCCCTGAACCCCACCGGATTCCCCGGGCCGGCCCGACCGCCC
3201   CCACCTAGTCCCTGGCCCCGCGAGTGCAACCCCCGACACTAACGGCCTTT
3251   ACGCGACATCCGAGCAGCGTGTCTATCCCAAAGGCCTAGGAGCATTTGCC
3301   CGGCTCGGTCAAATCTAGCGCAAGTTTGAAGCCTGCGGCCTCGCAATTTT
3351   AGCAGCTTCGTTCCAGGCCAGGTGAGCTGGAGCGCGGATTTAGAATGCTT
3401   TCCTGCTCTTCGAGAACTTGAGGTTTTAATTTTAATTTTTACTTTTTTTT
3451   TTTTTGACACGGAGCCTTGCTCTGTCGCCCAGGTTGGAGTGCAGTGGCGA
3501   TCTCGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCAATTCTCCTGCC
3551   TCAGCCTCCTGAGTAGCTGGGACTACAGGCTCGTGCCACCACACCTGGCT
3601   AATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAAACTG
3651   GTCTCCAACTCCTGAGCTCATGATCCTCCTACCTCAGCCTCCCAAAGTGC
3701   TGGGATTACAAGCATGAGCCATCGCGCCCGGCTGAGCTTGAGGTTTTTAT
3751   GGTCTTTTCTGGGTGACTTTGCAGTGGTCATATTATTACTCCTAGGTGGG
3801   GGAAGGTAGGGACTGTCCCTCATCACTGCTGTGCCTGCAGAGGACTCCTG
3851   ACACCGGGATTGTCGGCAGGGTGCAACCAAGAGCAAAAGCACCCAGAAGT
3901   GGGGGTGTGGGTCACCAAGTAAGAGAGGAGGCCCCTCCATAAGGAAGGAG
3951   CAGGTCAAGGGGCAAGGGGAGTGGTGGCTGGGGCGTTTGGCCCTGCCTGG
4001   CATGCTCAATTCTGTGTGTGCACAGCTGTCCCCAGCCATGCATGCTCTCC
4051   ATGGAAGTCAGGTGCAGCCCTGTGTTCTCTCACACTGCAGTCCTTTCAGC
4101   CAGCCTGTGAACAGGGCCCTTCCCCGCCCTGTCTTCAGTTTCTCCTCTCT
4151   GAAGGGGGGTGACCACCCACCTTGAGGGTGGCCTCCCAGTGAGGTGAGCA
4201   CACCAAGGGTGGGCCATTCTTTCCTGGCAGACTCACCAGGCCTGGTCCAG
4251   CCGCTACTCCCTTGTTCATGCAGTCCATGCCACCTGGTTCCTGTTTGCCA
4301   CACCAAACAAACTGAACACTTCTCATGGTGGTCCCCGGGCCTAAACTGCA
4351   GAGAGTTGTTACTTCAGCTCCCATGGCTGATGGACTGCAGGTTCCACAAA
4401   GCATGGCCTTGCACCTCGGAGGCACCCAAGACCACTTAAGTGGGTTACAC
4451   AAATGAAAATGAGGCTGAAAGGATGACACTGAAGCAGGCATTGAAATGCC
4501   AACTTTTTTTTTTTTTTTTTTTGAAACGGAGTCTTGCTCTGTCGCTCAGG
4551   CTGGAGTGCAGTGGTATGATCTCCACTCACTGCAACTTCTGCCTCCTGGG
4601   TTCAAGCGATTCTCTTGCCTCAGCCTCCCGAGTATCTGGGACCACAGGCA
4651   CATGCCACCATGCCCCGCTAATTGTTTGTTTTTTGTTGTTTTTTTGTTTT
4701   TGTTTTTGTTTTTTTAAACAGAGTCTCACTCTGTTGCCAGGCTGGAGTGC
4751   GGTGGTGTGATCTCAGCTTACTGCAACCTCCACCTCCCGGGTTCAAGTGA
4801   TTCTCCTGCTTCAGCTTCCCAAGTAGCTGGGACTACAGGCACGTGCCACC
4851   ATGCCCAGCTAATTTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCA
4901   TGTTGGCCAGGATGGTCTCTTGTGATCCGCCTGCCTCAGCCTCCCAAAGT
4951   GCTGGGATTACAGGCATGAGCCACCACGCCTGGCCTGAAATGCCTACTTT
5001   TTAAAAATGAGTCACTTTAGCGGGGAATAGTGGCTCATGTCTATATCCCA
5051   GAACTTTGTGAGTCCCAGGCAGGCAGATTGCTTGAGTCCAGGAGTTCGAG
5101   ACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACAAAAAATACAAAAA
5151   TTAGCAGGGCATAGTGATGCACACCGGTAGTCCCAGCTACTTGGGAGGCT
5201   GAGGCAGGAGGATCGTTTGAGCCTGGAAGGCGGAGGTTGCAGTGAGCCAA
5251   GATCACACCATTGAGCAAGACCCTGTCTCAAAATAATAAAGGTAAATAAA
5301   AGTGAGTGACTTTAAAGAAAAGATTGCCTTTCAGGCGCGGTGGCTCACGC
5351   CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTC
5401   AGGAGTTCAAGACCAGCCTGGCCAACACGGTGAAACCCCATCTCTACTAA
5451   AAATATAAAAAATTAGCTGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCT
5501   ACTCGGGAGACTGAGGCAGGAGAATGGCATGAACCTGGGAGGCGGAGCTT
5551   GCAGTGAGCCGAGATCGCGTCACTGCACTCCAGCCTGGGCGACAGAGAGA
5601   GACTCCGTCTCAAAAAAAAAAAAAAGAAAAGAAAAGATTACGAACAGTGT
5651   AGGTTGTAAAAATTACTGCTGTCTTACTTCTCCTCGCCCTCTAGGAGTCT
5701   CTGTGGAGTCTTCTTGAATAAGCTGTGAAACATTTCCCCACCCGCTTCCC
5751   TTTCTTGGCCCAGGCTTCCTGACCACAGCCTCACCTTTGAGCAGCTCAGA
5801   GCCCTGCCTGCCAGGATGCGAGCCACTGCCTGGATCGTGGCTCTGCAGGG
5851   CCACCCATGATGGAACAGGTCGCCTGGTGAGGTGGTGAGGCCCTTCATCA
5901   TTTCAGGGGGTGTACAGCAGTACTGGGTAACCCTGAAAATCAGGGATGAG
5951   ACTGAAGGATCCCTTCCAGAATGTGGACACAACCCCTCCTTTGAGTCTCA
6001   CCTCCTTTCCTTCTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGC
6051   TGGAGTGCAATGGAACAATCTCGGCTCACTGCAACCTCCGCCTCCCGGGT
6101   TCAAGTGATTCTCCTGCTTCAGCCTCCTGAGTAGCTGGGCTTACAGGTGT
6151   GTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTC
6201   ACCATGTTGGTCAGGCTGCTCTCCAACTCCTGACCTCGTGATCCACCTGC
6251   CTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCGGC
6301   CTCTCGCCTCCTTTCTTTCAAGTCTGAGGTGGCTAGCCTGGAGGGGTCCC
6351   CAGGGGCTTGTTGGGCACTGACGAGGGGACACCCTGGGGGCCCAGTACTC
6401   CACTCAGACACCTCCCACAGCCTTCTGACAGCATCCTTCCCACAGCTGAC
6451   CAGCTAGAGGACCTCCTGACCCCTCCACTTGTCTGCTGGTGTGGAAAAGC
6501   CTGGACCCTCCCTCTTGGAGCCTCAGTTTCCCTATCTGTAAACTTCGGTC
6551   TATCCCAAGCTGAAGAACTGGCCAGTCCCTGCCATATGCCTCACTTTCCC
6601   CTGGGACACATTTTAATATCCCTTTCCTGGCCAGGTGCAATGGCTTCCCC
6651   ATGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACTTGAGGTC
6701   AGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAA
6751   AAATACAAAAATTAGCCAGGCATGGTGGCGCACGTCTGTGGTCCCAGCTA
6801   CTTGGGAGGCTGAGGTAGCAGAATCGTTTGAACCTGGGAGGCGGAGGTTG
6851   CAGTGAGTGGAGATCACACCACTGCACTCCTGCCTGGGAGACAGAGTGAG
6901   ACTGTGTCTCAAAAAATAATAATAATAAAAAATAAAATAATATCCCTTTC
6951   CTCACAGGGGCTATTGTGTCATCTTCTAGAAGGATCCGTTGAGGCTCTGA
7001   GGGGTGGGGGAACTTGCTTGTGGGTAGGACCACCTGTCAGAGGTCAGAGG
7051   TCAGGCCACCAAGGAGACCCAGTGGGATGCGCCTTCCAAAGGTGGGGGTA
7101   CGGATGGGACCCATGAAACCTGACTCCTCTCAGACTCTAGCCAAGTCTAA
7151   GACTTTGGACGGCCACCACCCAGAGGAGAAACTGAGACCCAGAGCGGCAC
7201   GGGTTGGCCAGGGTCACCCAGCACCAGATAGGGACTTTGCCAGCCCCGGG
7251   GCAGGACCCTGTCTCCGGCCCTCGACCCCGCTGGGCCGTACCCTCCCCGT
7301   TCACCTCCCCCACCCGGGCCGCGGCTGCTAGGAGAGTTCAGAACAAAAGG
7351   CGGCGGGGGGCGGGGCCGAGGCGGGCCGGGGGTGGGGCGGAAGCTATAAG
7401   GGGCGGCGGCCCGGAGCGGCCCAGCAAGCCCAGCAGCCNCCGGGGCGGAT
7451   GGCTCCGGCCGCCTGGCTCCGCAGCGCGGCCGCGCGCGCCCTCCTGCCCC
7501   CGANTGCTGCTGCTGCTGCTCCAGCCGCCGCCGCTGCTGGCCCGGGCTCT
7551   GCCGCCGGTGAGTGCCCGCCACTCGCCGGCCGCTCCTCGCTGAGGGGGCG
7601   CCGGGCACGCGGGCTGGGCCCAGCGGCGGATCCGGACCGAAGGGGGCGCC
7651   CCGGGTGGCCTCCAGCGCCCGGTACCCGAAACGCTTTCTGGTTCCCTCTA
7701   GGCGTGATAGACAGCGAGCTTGCAGTCCCTGGGGGTGTGAAGGGGAGCCG
7751   GCGCCGGCATCGTTCGGGCTGGTGGGACGGGACTCCACGCTGGACTCACG
7801   CTTGCTCCCAGCGTGGGGACCTGCCTCTCGCGCTCCAGCCGCGGGTGCTG
7851   GAGTGTGCGTTGAAGGAAGCAGCAGAGGGAGTGGTAACAGGGCCCCCTAT
7901   TCATCGCAGGGACAAAGCCGAGCAGATCCCAGGCAGGTGTCAGCCTGCAG
7951   GTGTGTGGCCGCAGTTAGTACACCTCCAGGTGTGCGGTGGGATGAAGGAT
8001   AAAGGGAGAAGGGAGGGCAGCGCTGTGCTGCGGGAAATGGGGTCTAAGCC
8051   TGGAGATGTCCCCCGCGGGCACCTGCCGGCAGCAGTTTTGGGAGGCTTGG
8101   AGCCAGGAGAACATGAGTATGAAATAGTATGAGTGCAGTGTGTGTGTGAC
8151   TGAGAGGTGGCTGTCAGAAAGAAGCGGGGAGAGAAAGGAAAGGGAGAAAA
8201   TGTGTGCTCAGGAGAGGAGAAGAAAGCCCAGGTAAGAGAGGACAGCAGAG
8251   TGAGGAGAGGAGGGACTGTCATGGAGTGTGTGTGACAGCTTGCATGTGTC
8301   CCAAAAGCTGCCCCTTCCCTGGGGCGCTTCCAGGCACCAGTCACAGGGCC
8351   TGGGGCCAGAGCCTGGGCCACTCCACTCCACAGCGGAGGCATCCAGACAG
8401   CTCGGGCAGGGAAGGGAGCAGGAGGGTGTGACAGGCAGGAGTCTCAGGAC
8451   TGGCCTGGTGAGGAGGCAGGCCTGGCCAGGCTGGGACCCTCTGTCCAGCC
8501   ACTCTGGCTCTGCTCAGGGCAGCCTTGTCCTGTGCTGGCTATGGGAGCAG
8551   AAAGGGATGGGATGGGTGGGGTAGAGTGAATGGGGGGCATCTCAGTCTGG
8601   AGTCTTGCCTCCTTCCCAGCCCCTCTTGGTTCCTAGGACTTGGGACAGAG
8651   TCAGGAATCACTGTGGGTAGACATTGAACCACAGGTCTGGAAATTGGAGA
8701   GATCTGGGTTTGAACCATGTGACCCTGGGTGAATCCTGCCATGCCTCAGA
8751   ATCTCACCCACTCCATCTCTAATGGGAGTGCAGGTGGGAGGGGGCAATGG
8801   TGCCTACTGCTGTGTCCACTGTTGAGCAATGAGGTGATGCCAGGCTCACT
8851   AGAAACACTGTCACCTGTAGCTGCCACTTTGACGCTTGTGCATGGTCAGT
8901   GCTGGAGCTGGGGGCCAGCTTGGGGTGGGGTCTGAGCTGGACTGTGGTCT
8951   GTCACTCTGCAAACACGCAGGGAGCATGTGGGGTCACCTCTGATGTGTTT
9001   ATCCCCCGGCTGCCTTCAGCAAGGCTGGGAGAGCTCTGTAAATATTTATC
9051   CAGCCCAGTTCCCAGCTTTCAGGGTTGATGGAAGCCCTGCAGTCCGATGG
9101   ATGGGACGAAGCTACCGTCCCTCCTGGAGCCAGCAGCAGAGGGGTGAGAA
9151   TAGGAAGATTAGGTGGAAGCTTGAGGGAGAAGATATCCCTGCTTGCCACC
9201   TGGCTGTGTGAGTTGGGCAGGTTGCTTGACCTCTCTGAGCCTGCATGGTG
9251   ATGCTCCCGTCTTCCTCCATAGCCTAACAAGTGCCCTCCTCGAAGTCTTG
9301   CCTCCCACCGACATCAGAAGGCATAGCTATGATTAATTATACCCACTAGA
9351   CCAACTGCAAACTGAGGCCCAGAAAGGGGCACAATGAGCCCAGCCTTTCG
9401   CAGTGTTTCCTGGCACCCTGGGGTCCTCCCTTATCTCCCCTCTATCTGGT
9451   GCCTCCCATTTTCTGGATTGCAAGTTGACCCCAGGGCGGGGTTGACTCCG
9501   AGTCTCTAAGCTCTGCCAGGACACTGGGTCAGCTGAGAAATTCCTTGAAT
9551   GTGTCTGCAGCTGAGGTTTGGTGTCTGGCAGAAGAGGGTGGGGCTGAGTG
9601   AGCTAAGAACCCACCACAGGGCAGGCCAAGGGAGGCTACTGGCCAAGACA
9651   GAGGGAATGCACTGGAAGCAGAAATGCTTCTTGGGAAAGTGGGTTTTGGA
9701   GAAAAGCCAAGAGCTGGGGAGACAGGGGGAAGCCCTGGAGGTGGGAGGCA
9751   TGAGCCCCAGGTCTAGGTCCAGCTCTTGCATGACTTGCTGTGTGACCCCG
9801   GGCAAAGTCCTTGAGCTCTCTGGGCTCTGTCTCATCCTCTGGGAAATGGG
9851   GGAGCTGCTTCTTCCTCAAGCTCCCCAGGGGTGTAGATGAGGCCAGTGGT
9901   GGCCTGTGTCTACCACCTCACCTCACTGAATCCTGAGAGTCCTGGGAAGG
9951   CCAAGCCCACCTGTCTCACAAGTAGCAAGCTGCTTCATGCCGTGCCTTGT
10001  AGTTAGGGCATCTGGCCCCAGGCCAGAAAGGACTTGGAAAGATGAAGTGT
10051  GGGAGGACAGTGAGGCAGAATGTGTGTCCTATCCCAGCCATGGGGAAACT
10101  GAGGCCAAGAGCTCATGGGCTCTAAAAAAATAATGGGCTCTAAAAACAAC
10151  CTCACTAGCTAGAGGCCTCATTTCTAGCATCTCCTGCTCACTCAGTTTCT
10201  AAGAATTTAATGAACAAGACAGGGACAGGGAGAAGAGACCTTGATATGTG
10251  GGAGACCCTGCACAAGGCGCTTCTCTTTTCTAGGCCTGAAAGCTCCCTTC
10301  TAGCTGCAACTTCTGTTTTACCATTTAAAGCCTGAAGATTTTGTTGGGTA
10351  GCTAGAGGGGCGGTGGGTGATGGGAACTGTAGGGACTGGCAAGGGCAGAT
10401  TCCCAAGCGTGGGAGGGGAGGGCCTACAGGGACAAGGAACAGGGCCAGGT
10451  AAGAGGTGCTTTTCTGTGCCAGAGGCTACAGCAGGCATTACAGAAGGATG
10501  TCATGTAGCCCTTTGCTGTGGCATCATTCCCATTTGACAGATAGGAAAGT
10551  TGAGGCTAAGAGAGGAAGGTGACTTGTCTAGAGTCTCCATGTCATAGAAC
10601  TAGGCCTTCTGAACCTCAGTGGCTGGCTCTTTTTGTGACACTAAGACTGT
10651  CATGATCCAGGGGTTTGGGCATGGACTGGGTGCCTCATGAGGGAAGGACA
10701  GGAAGGGACAGTGGAAGGGGTGGGGGCATGCCCGTGGCTCTCCCTCCATG
10751  ACTGTCTGCACCAGGACTCACTAGAGGGCAGAGGAGAGAAGAGATTTCTG
10801  ACCATGGGCATAGCAGGGCTGGCAGGCTGGGCTCTGGGTTGTTTGGAGCT
10851  CCCAGGGGAGAGCACAGCTCTGCCCTTTCCAGGGAGGGTCTTCATACCCC
10901  TGCCAGGCTGGGGAAAGGAATCTGTTTCTCCTGTAAGTCAAGGGGGCAGT
10951  GTGGCGAGGAGGAGGAGGCAGGCCCCTCTGGCAGCCCACATCCTCCATGG
11001  GAGAACTTGGATATGTAGCATCTCCACCTGCCTGGTGGATATTGGAAGCC
11051  CAACGAACCTGCCTGCAAAATGCCCGGGAAATAGCAGGCGCTGAATAATT
11101  TGCACCTCACCAAGGTGAGGCCAGCCTGGGTCCCTCCTTCAGGGGAAGGG
11151  TAACTCAACCCCTGCAGAGCAGAGCAGAGGTAGCAGGGAGCTGGGTGGGC
11201  TGTGAGCACAGACAGTCCGCTGCCTGCCAGCTGTTGTCTGATCAAGCTGC
11251  TTAACTCCTCTGGGGCCCATTTCCTCATCCTGGAAATGAGGGTGATGATG
11301  GTGGAGTTGGTGAGAGGTTCCATCAGGGGCTAAGAGCAAGTCTGTGGAGC
11351  TGTTGCCAAGGTCCTAGCCTGCAACCAGTGCTAAGTACTTTTTTTTTTTT
11401  TTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCTGTGGCACG
11451  ATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGC
11501  CTCAGCCTCCCGAATAGCTGGGACTACAGGAGCCCGCCACCACGCCTGGC
11551  TAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGA
11601  TGGTCTCGATCTCCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGT
11651  GCTGGGATTACAGGCGTGAGCCACCAGGCCCGGCCAACCAGTGCTAAGTA
11701  CTTATTAACAATAAGCCCAGGCCGGGCGCGGTGGCTCACGCCTGTAATCC
11751  CAGTACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGTTCAAG
11801  ACCAGCCTGGCCAAGATGGATAAACCTCATCTCTACTAAAAATACAAAAA
11851  TTAGCCAGGCGTGAGGCTGGGTGCGGTGGCGCATGCTTGTAATCCCAGCA
11901  CTTTGGGAGGCCGAGGCAGGCGGATCACAAGGTCAGGAGATCGAGACCAT
11951  CCTGGTAACATGGTGAAATCCCGTTTCTACTAAAAATACAAAAAAATTAG
12001  CCGGGCATGGCAGCAAGTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGT
12051  CAGGAGCATGGCATGAACCCGGAAGGCGGTGGTTGTAGTGAGCCCAGATC
12101  ACACCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCTCTCTCAAAAA
12151  AAAAAAAAAAAAAATTAACCAGGCGTGGTGGCAGGCACCTGTAACCCCAG
12201  CTACTCGGGAGGCTGAGGCAGAGAATTGCTTGAACCCGGGAGGTGGAGGT
12251  TGTAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTG
12301  AGACTCCATCTCAAAAAAACAAAACAAAAAACCAATAAGCCCAGAATCGG
12351  CCAGAACCCACAACCCAGTGAGACTGCGCTGTGCCAGGTAACCATGCAAT
12401  AAGCAAGCTCGGAAATGGGGGGAAGCTGCTTCAGGGCCTCACGCCCTAAG
12451  TAGTTCCATAGCCTCCGTGTTCAGAAGGCCCCCCTTCATGGTGGGGTGTT
12501  CTTGATGCCTCAGCTCTGGGATCAGGAGCAGGGAGCGTTGGGACGCTGAT
12551  CAGATCCCTGGGGTGTATGGAGCCTGGGAGAGCTGCCAAAGGCTGAGGGT
12601  GAGGTGGGGCCTGAGTGGCTGAGCTCCTACCCCAAATATGGCTGTGAGGA
12651  GGCTGCAGTTGCCCAGACCAGACAGGTGCTGAGTCTCTCAGCAAGCAGCA
12701  CAGCTCCATCCCTCTCCTTCAGTGCAGGAAGGACACTTGGCTTCTGTGCG
12751  GTGTCCAGAGCCAGGCCTTAGCCTTAGGCCTGAGCCACCAGAGTCCTGGC
12801  CTGGCCTTGCCATGCCCTTGCTGGGTGACTTTGCAGGGTCTCCAACCTCT
12851  CTGAGCTTCTGCTTTTCTCATGCACAAGAACTGTAACTTCTGCCCTGGAG
12901  ACTTATAGACAGGTAGCAGGATGTAGCTTAGGTCTGAATCGCCATCTGTG
12951  GTCCTGGGGCTTTGGCGAGTGGGGCTGGGCACCTGGTAATTAACTGTCCC
13001  CACCCTCCCCGCTTGAAGAAGGCAGGCAGATCACAGATCAGCTCCCACTG
13051  TACTCCTAGCCCTGGTGGGGTGTGACCAAAACCACCTCTGCTAGAAGCCA
13101  GGCCTCAGTGGCCAGGTGCCTTCCCGGGTGCTGGGCCTGTGCTAGGTGCT
13151  GTACATACCTCACCTTGTCCAGTCCACAAGTCAGTGTCACCCCCAGCAGT
13201  CAGGTTACACTGACTGAGGCCACACTGCAGGGCTACAGCCGCTCCACACT
13251  GGGGAGGAGGTGGGGGAAATCCTGGGCAGGAGAGAGGGCAGATCCTGCTC
13301  ACATGACAGGGACAGGAGCATGACCCAGGTGTGTCTGAACTTAGCGGACA
13351  CAGGAAGAAAGGGAGTTGGAAGCAAGTTTCTGTGGGGAGCAGGAGGAGGT
13401  TGCCTGGTGTTCCTTCGGAGGAAGCTTTTTGGGGTCCATTCCTGGAGTGT
13451  ATGGCTCATAGCCAGTCCCAGTGTGCCCCCACCCCCAGACCTCATTGGCC
13501  TAAGTAGCTGGAGTAGGTGACAGGCAGCCCAGGGCCCTCCACGATGTGGG
13551  GGACAGCTTGATGCCTTGGAACAAGGTGCCAAGAAACCAGAGAGCCAGCC
13601  AGATGCCAAAGGGCCCTGCCATGTGCCGGTGCCCTTTCCCTCTCCATTTG
13651  CCCAGCCACACAGTGGGCTGGGGTTGCACGTGTGTTTGCTGACAGGCCAC
13701  ATCTCTAACTGTGGGCCATGTGGACCTTAGGCCTGACCAGACCCTCATGT
13751  CATCCTCCTGCCTANGGACGCCCACCACCTCCATGCCGAGAGGAGGGGGC
13801  CACAGCCCTGGCATGCAGCCCTGCCCAGTAGCCCGGCACCTGCCCCTGCC
13851  ACGCAGGAAGCCCCCCGGCCTGCCAGCAGCCTCAGGCCTCCCCGCTGTGG
13901  CGTGCCCGACCCATCTGATGGGCTGAGTGCCCGCAACCGACAGAAGAGGT
13951  TCGTGCTTTCTGGCGGGCGCTGGGAGAAGACGGACCTCACCTACAGGNTA
14001  GGGGCCTGGGAGCAGGACACTAGGATGCCACCTGTGTGTC


Proscan: Version 1.7
Processed Sequence: 14040 Base Pairs


Promoter region predicted on forward strand in 2336 to 2586
Promoter Score: 60.58 (Promoter Cutoff = 53.000000)
TATA found at 2542, Est.TSS = 2572
Significant Signals:
 Name                   TFD #  Strand  Location  Weight
AP-2                    S01936   +       2379    1.108000
JCV_repeated_sequenc    S01193   -       2386    1.658000
UCE.2                   S00437   +       2418    1.278000
GCF                     S01964   -       2433    2.284000
AP-2                    S01936   -       2467    1.091000
myosin-specific         S00608   -       2478    1.115000
GH-TRE                  S00193   +       2547    3.911000
Sp1                     S00781   +       2550    3.191000
GCF                     S01964   +       2551    2.361000
T-Ag                    S00974   +       2553    1.086000
Sp1                     S00801   -       2555    3.119000
APRT-mouse_US           S00216   -       2557    7.604000
AP-2                    S01936   +       2557    1.108000
AP-2                    S00180   +       2557    1.863000
Sp1                     S00978   +       2561    3.013000
JCV_repeated_sequenc    S01193   +       2561    1.427000
Sp1                     S00802   -       2566    3.061000
AP-2                    S00346   -       2566    1.672000
AP-2                    S01936   -       2568    1.091000
EARLY-SEQ1              S01081   -       2568    5.795000
(Sp1)                   S01187   -       2568    6.819000
Sp1                     S00953   -       2569    5.737000
AP-2                    S00346   +       2582    1.355000



Promoter region predicted on forward strand in 7130 to 7380
Promoter Score: 55.96 (Promoter Cutoff = 53.000000)
TATA found at 7341, Est.TSS = 7371
Significant Signals:
 Name                   TFD #  Strand  Location  Weight
AP-1                    S00090   -       7131    1.052000
UCE.2                   S00437   -       7164    1.216000
AP-2                    S01936   +       7244    1.108000
T-Ag                    S00974   +       7248    1.086000
AP-2                    S01936   -       7251    1.091000
UCE.2                   S00437   -       7270    1.216000
UCE.2                   S00437   +       7284    1.278000
AP-2                    S00346   +       7306    1.355000
PuF                     S02016   -       7315    1.391000
JCV_repeated_sequenc    S01193   -       7315    1.658000
GCF                     S01964   -       7322    2.284000
GH-TRE                  S00193   +       7346    3.911000
Sp1                     S00781   +       7352    3.191000
NGFI-C                  S01813   +       7353    6.885000
(Sp1)                   S00857   +       7356    4.589000
Sp1                     S00064   +       7357    10.681000
Sp1                     S01542   +       7357    6.661000
Sp1                     S00801   -       7357    3.119000
T-Ag                    S00974   +       7357    1.086000
Sp1                     S00979   +       7357    6.023000
Sp1                     S00645   +       7357    12.906000
JCV_repeated_sequenc    S01193   +       7358    1.427000
AP-2                    S01936   -       7358    1.091000
Sp1                     S00978   +       7358    3.013000
GCF                     S01964   +       7360    2.361000
AP-2                    S00346   -       7360    1.672000
Sp1                     S00802   -       7363    3.061000
UCE.2                   S00437   +       7364    1.278000
EARLY-SEQ1              S01081   -       7365    5.795000
(Sp1)                   S01187   -       7365    6.819000
APRT-mouse_US           S00216   -       7366    7.604000
PuF                     S02016   +       7380    1.082000



Promoter region predicted on forward strand in 12400 to 12650
Promoter Score: 56.87 (Promoter Cutoff = 53.000000)



Significant Signals:
 Name                   TFD #  Strand  Location  Weight
JCV_repeated_sequenc    S01193   +       12417   1.427000
AP-2                    S01936   -       12542   1.091000
T-Ag                    S00974   +       12606   1.086000
APRT-CHO_US             S00215   -       12610   1.628000
SRF                     S00496   +       12632   17.211000
SRF                     S00492   +       12632   8.606000
(SRF)                   S00230   +       12632   2.868000
SRF                     S00495   -       12641   17.211000
SRF                     S00492   -       12641   5.737000
(SRF)                   S00230   -       12641   3.155000



Promoter region predicted on reverse strand in 7616 to 7366
Promoter Score: 54.01 (Promoter Cutoff = 53.000000)


Significant Signals:
 Name                Strand  Location  Weight
UCE.2                   -       7581    1.278000
UCE.2                   +       7578    1.216000
Sp1                     -       7570    3.191000
Sp1                     +       7565    3.119000
T-Ag                    -       7500    1.086000
GCF                     -       7485    2.361000
GCF                     +       7484    2.284000
UCE.2                   -       7481    1.278000
UCE.2                   +       7478    1.216000
Sp1                     -       7448    3.292000
Sp1                     +       7443    3.361000
GCF                     +       7406    2.284000
EARLY-SEQ1              -       7392    6.322000
APRT-CHO_US             -       7388    1.860000
HSV_IE_repeat           +       7387    1.363000
AP-2                    -       7387    1.108000
JCV_repeated_sequenc    +       7385    1.658000
ETF                     -       7382    2.458000
PuF                     +       7380    1.391000
Sp1                     -       7375    2.755000
UCE.2                   +       7374    1.216000
Sp1                     +       7370    2.772000
APRT-mouse_US           -       7366    6.003000



Promoter region predicted on reverse strand in 5593 to 5343
Promoter Score: 68.60 (Promoter Cutoff = 53.000000)


Significant Signals:
 Name                Strand  Location  Weight
AP-2                    -       5592    1.355000
CREB                    +       5568    1.147000
Sp1                     -       5548    50.000000
Sp1                     +       5539    3.608000
Sp1                     -       5483    2.755000
Sp1                     +       5478    2.772000
NF-GMa                  -       5439    1.912000
Lymphokine_CS           -       5439    2.220000
Sp1                     -       5384    2.755000
Sp1                     +       5379    2.772000
UCE.2                   +       5373    1.216000

 Besonders interressant im folgenden die hits um2 und 7 kb :
---Berkley+2 andere Promotor predicters 

Promoter predictions for 1 eukaryotic sequence with score cutoff 0.80 (transcription start shown in larger font):
Promoter predictions for seq0
:
Start   End    Score                Promoter Sequence
  908   958    0.89    TGGAGGTGCGTTTCAAACCTGGGGCCACCTGCCCCTCCCCACATCCCCAG
 1702  1752    0.99    GGGTTTCCCATCTTTAAAGGGCTGGTTGGTGTCTCTCCCTGGGAGCTTAG
 2507  2557    0.89    TGTCGCGGGGACAAATGCCGCAGCGCTTGTCACAGCCGGCGCAAAAAAGG
 2528  2578    0.89    AGCGCTTGTCACAGCCGGCGCAAAAAAGGCGGGGCCCCGGGCGGGGCCTC
 2536  2586    1.00    TCACAGCCGGCGCAAAAAAGGCGGGGCCCCGGGCGGGGCCTCAGGAACAC
 3085  3135    0.88    TTCGACTGTTGGCCAAAATGCGCTGCCAATGCTGGCAGCCTTACGCAGTG
 3126  3176    0.82    TACGCAGTGCCCGCGGGGGATATGAGGCCCCCCGCGCGGCCCTGAACCCC
 3134  3184    0.96    GCCCGCGGGGGATATGAGGCCCCCCGCGCGGCCCTGAACCCCACCGGATT
 4995  5045    0.96    ATGCCTACTTTTTAAAAATGAGTCACTTTAGCGGGGAATAGTGGCTCATG
 5288  5338    0.86    ATAATAAAGGTAAATAAAAGTGAGTGACTTTAAAGAAAAGATTGCCTTTC
 5447  5497    0.97    CTCTACTAAAAATATAAAAAATTAGCTGGGCATGGTGGCGGGCGCCTGTA
 7336  7386    0.99    GGAGAGTTCAGAACAAAAGGCGGCGGGGGGCGGGGCCGAGGCGGGCCGGG
 7386  7436    1.00    GGTGGGGCGGAAGCTATAAGGGGCGGCGGCCCGGAGCGGCCCAGCAAGCC
 7877  7927    0.84    GCAGAGGGAGTGGTAACAGGGCCCCCTATTCATCGCAGGGACAAAGCCGA
 9034  9084    0.88    GAGAGCTCTGTAAATATTTATCCAGCCCAGTTCCCAGCTTTCAGGGTTGA
 9877  9927    0.91    TCCCCAGGGGTGTAGATGAGGCCAGTGGTGGCCTGTGTCTACCACCTCAC
10117 10167    0.89    CTCATGGGCTCTAAAAAAATAATGGGCTCTAAAAACAACCTCACTAGCTA
10133 10183    0.96    AAATAATGGGCTCTAAAAACAACCTCACTAGCTAGAGGCCTCATTTCTAG
11058 11108    0.95    ACGAACCTGCCTGCAAAATGCCCGGGAAATAGCAGGCGCTGAATAATTTG
11984 12034    0.93    ACTAAAAATACAAAAAAATTAGCCGGGCATGGCAGCAAGTGCCTGCAGTC






BLASTN 2.1.1 [Aug-8-2000]
Tem6genomic erste 13 000 mit  blastn against unigenHuman 
 to check the probability that the 7 kb promotor is the one

nur ersten zwei hits sind interresant the rest is alu wie aus einem test 
 gegen alu ermittelt wurde

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (14,040 letters)

Database: Hs_contigs.seq
           110,965 sequences; 93,868,674 total letters




 Distribution of 2679 Blast Hits on the Query Sequence 







                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ugc|Hs.116254.2|Hs.116254 GENE= PROTSIM= ESTs                        856  0.0
ugc|Hs.155324.2|Hs.155324 GENE=MMP11 PROTSIM=PID:g2384812 matri...   452  e-125
ugc|Hs.161554.120|Hs.161554 GENE=FLJ20159 PROTSIM=PID:g7020076 ...   410  e-112
ugc|Hs.194149.4|Hs.194149 GENE= PROTSIM=PID:g2062680 Homo sapie...   408  e-111
ugc|Hs.193914.1|Hs.193914 GENE=KIAA0575 PROTSIM=PID:g3834294 KI...   396  e-108
ugc|Hs.66915.1|Hs.66915 GENE= PROTSIM=PID:g5531805 ESTs, Weakly...   385  e-104
ugc|Hs.155983.9|Hs.155983 GENE=KIAA0677 PROTSIM=PID:g3881722 KI...   363  6e-98
ugc|Hs.175475.1|Hs.175475 GENE=KIAA1198 PROTSIM=PID:g6330394 KI...   355  1e-95
ugc|Hs.92254.3|Hs.92254 GENE=FLJ20163 PROTSIM=PID:g7020083 hypo...   355  1e-95
ugc|Hs.251994.3|Hs.251994 GENE= PROTSIM=SP:P39194 Homo sapiens ...   349  9e-94
ugc|Hs.66915.2|Hs.66915 GENE= PROTSIM=PID:g5531805 ESTs, Weakly...   349  9e-94
ugc|Hs.193700.2|Hs.193700 GENE= PROTSIM=SP:P39189 Homo sapiens ...   345  1e-92
ugc|Hs.179600.3|Hs.179600 GENE=TAPBP PROTSIM=PID:g2388666 TAP b...   339  8e-91
ugc|Hs.174905.2|Hs.174905 GENE=KIAA0033 PROTSIM=PID:g3875379 KI...   337  3e-90
ugc|Hs.104696.3|Hs.104696 GENE=KIAA1324 PROTSIM=PID:g7243029 KI...   337  3e-90
ugc|Hs.125037.2|Hs.125037 GENE=FLJ20548 PROTSIM=PID:g7020729 hy...   333  5e-89
ugc|Hs.279558.1|Hs.279558 GENE=PRO0478 PROTSIM=SP:P39192 PRO047...   331  2e-88
ugc|Hs.234791.1|Hs.234791 GENE=KIAA0889 PROTSIM=PID:g4240267 KI...   325  1e-86
ugc|Hs.7446.1|Hs.7446 GENE=DKFZP586G0522 PROTSIM=PID:g2842416 D...   323  5e-86
ugc|Hs.61333.2|Hs.61333 GENE=PTGIS PROTSIM=PID:g1041879 prostag...   315  1e-83
ugc|Hs.89121.1|Hs.89121 GENE=KIAA0485 PROTSIM= KIAA0485 protein      311  2e-82
ugc|Hs.281022.1|Hs.281022 GENE=KIAA1456 PROTSIM=PID:g854476 KIA...   307  3e-81
ugc|Hs.92381.2|Hs.92381 GENE=NUDT4 PROTSIM=PID:g7739464 nudix (...   305  1e-80
ugc|Hs.102576.1|Hs.102576 GENE=RFPL1S PROTSIM=PID:g3417312 ret ...   303  5e-80
ugc|Hs.6874.1|Hs.6874 GENE=KIAA0472 PROTSIM=PID:g733574 KIAA047...   295  1e-77
ugc|Hs.173043.4|Hs.173043 GENE=MTA1L1 PROTSIM=PID:g3165588 meta...   293  4e-77
ugc|Hs.132390.5|Hs.132390 GENE=ZNF36 PROTSIM=PID:g3877147 zinc ...   291  2e-76
ugc|Hs.239782.3|Hs.239782 GENE= PROTSIM=PID:g1255805 H.sapiens ...   285  1e-74
ugc|Hs.274589.1|Hs.274589 AL157490.274589 Homo sapiens mRNA; cD...   274  4e-71
ugc|Hs.174038.1|Hs.174038 GENE=SEDL PROTSIM=PID:g2494140 spondy...   274  4e-71
ugc|Hs.174007.7|Hs.174007 GENE=VHL PROTSIM=SP:P40337 von Hippel...   272  2e-70
ugc|Hs.137574.2|Hs.137574 GENE=F2RL3 PROTSIM=PID:g3881639 coagu...   272  2e-70
ugc|Hs.117077.2|Hs.117077 GENE=ZNF264 PROTSIM=PID:g3877147 zinc...   272  2e-70
ugc|Hs.46798.1|Hs.46798 GENE= PROTSIM=PID:g6010480 Homo sapiens...   272  2e-70
ugc|Hs.268491.1|Hs.268491 GENE= PROTSIM=SP:P39194 Homo sapiens ...   270  6e-70
ugc|Hs.129735.1|Hs.129735 GENE=AD7C-NTP PROTSIM=PID:g3002527 ne...   264  4e-68
ugc|Hs.124841.1|Hs.124841 GENE= PROTSIM=SP:P39188 Homo sapiens ...   264  4e-68
ugc|Hs.3346.2|Hs.3346 GENE=FLJ11280 PROTSIM=PID:g7243161 hypoth...   264  4e-68
ugc|Hs.60617.3|Hs.60617 GENE=SIAT4A PROTSIM=PID:g3169564 sialyl...   260  6e-67
ugc|Hs.274448.3|Hs.274448 GENE=FLJ11029 PROTSIM=PID:g7023440 hy...   254  4e-65
ugc|Hs.127675.1|Hs.127675 GENE=CLN8 PROTSIM=PID:g6467261 ceroid...   254  4e-65
ugc|Hs.22937.5|Hs.22937 GENE=DKFZp434N1526 PROTSIM=PID:g7008404...   248  2e-63
ugc|Hs.61809.1|Hs.61809 GENE= PROTSIM=SP:P39192 Homo sapiens mR...   244  4e-62
ugc|Hs.278938.1|Hs.278938 GENE=PRO0483 PROTSIM= PRO0483 protein      242  1e-61
ugc|Hs.75452.1|Hs.75452 GENE=HSPA2 PROTSIM=PID:g3924750 heat sh...   236  9e-60
ugc|Hs.274168.1|Hs.274168 GENE= PROTSIM=PID:g7328086 Homo sapie...   224  3e-56
ugc|Hs.234786.1|Hs.234786 GENE=KIAA0707 PROTSIM=PID:g3327228 KI...   220  5e-55
ugc|Hs.164256.3|Hs.164256 GENE=FLJ20657 PROTSIM=PID:g7020902 hy...   214  3e-53
ugc|Hs.117582.121|Hs.117582 GENE=LOC51622 PROTSIM=PID:g4929555 ...   192  1e-46
ugc|Hs.278393.2|Hs.278393 GENE= PROTSIM= Homo sapiens mRNA; cDN...   182  1e-43

>ugc|Hs.116254.2|Hs.116254 GENE= PROTSIM= ESTs
          Length = 508

 Score =  856 bits (432), Expect = 0.0
 Identities = 438/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattgctgagaagttgcatcagcaagaggggcaaggtcagacaggatttgaggccgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattgctgagaagttgcatcagcaagaggggcaaggtcagacaggatttgaggccgcca 384

                                                                       
Query: 61  ggggcacctaagctgtgggtgcagagaatgggatgcagaggtagagacaagaagggtaga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggggcacttaagctgtgggtgcagagaatgggatgcagaggtagagacaagaagggtaga 324

                                                                       
Query: 121 ggtggcaggtatccctgataagggggagaccatgggttcatcctgggattccaccctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtggcaggtatccctgataagggggagaccatgggttcatcctgggattccaccctcag 264

                                                                       
Query: 181 agtcagatgcccttgggatcaccgactaatgcctctccacctcactctggactgcccaag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 agtcagatgcccttgggatcaccgactaatgcctctccacctcactttggactgcccaag 204

                                                                       
Query: 241 gaatctgtcctgtgctacccacagtgcagattgcaacagggctcctcctccccacccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaatctgtcctgtgctacccacagtgcagattgcaacagggctcctcctccccacccagg 144

                                                                       
Query: 301 gccctgattaaggggatggattgcacactgtagtgagacatccatcctgaccccacctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gccctgattaaggggatggattgcacactgtagtgagacatccatcctgaccccacctca 84

                                                                       
Query: 361 tcagccagggagctccctgaagacaggccatcgagagaggcacacaacaggctgtggtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tcagccagggagctccctgaagacaggccatcgagagaggcacacaacaggctgtggtct 24

                               
Query: 421 aaaataaacttttaattgca 440
           ||||||||||||||||||||
Sbjct: 23  aaaataaacttttaattgca 4



>ugc|Hs.155324.2|Hs.155324 GENE=MMP11 PROTSIM=PID:g2384812 matrix
             metalloproteinase 11 (stromelysin 3)
          Length = 1373

 Score =  452 bits (228), Expect = e-125
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                         
Query: 13766 ggacgcccaccacctccatgccgagaggagggggccacagccctggcatgcagccctgcc 13825
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117   ggacgtccaccacctccatgccgagaggagggggccacagccctggcatgcagccctgcc 176

                                                                         
Query: 13826 cagtagcccggcacctgcccctgccacgcaggaagccccccggcctgccagcagcctcag 13885
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177   cagtagcccggcacctgcccctgccacgcaggaagccccccggcctgccagcagcctcag 236

                                                                         
Query: 13886 gcctccccgctgtggcgtgcccgacccatctgatgggctgagtgcccgcaaccgacagaa 13945
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237   gcctccccgctgtggcgtgcccgacccatctgatgggctgagtgcccgcaaccgacagaa 296

                                                                 
Query: 13946 gaggttcgtgctttctggcgggcgctgggagaagacggacctcacctacagg 13997
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297   gaggttcgtgctttctggcgggcgctgggagaagacggacctcacctacagg 348



 Score =  220 bits (111), Expect = 5e-55
 Identities = 118/119 (99%), Gaps = 1/119 (0%)
 Strand = Plus / Plus

                                                                        
Query: 7440 ccggggcggatggctccggccgcctggctccgcagcgcggccgcgcgcgccctcctgccc 7499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ccggggcggatggctccggccgcctggctccgcagcgcggccgcgcgcgccctcctgccc 60

                                                                       
Query: 7500 ccgantgctgctgctgctgctccagccgccgccgctgctggcccgggctctgccgccgg 7558
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ccga-tgctgctgctgctgctccagccgccgccgctgctggcccgggctctgccgccgg 118



>ugc|Hs.161554.120|Hs.161554 GENE=FLJ20159 PROTSIM=PID:g7020076
            hypothetical protein FLJ20159
          Length = 3095

 Score =  410 bits (207), Expect = e-112
 Identities = 258/275 (93%)
 Strand = Plus / Minus

                                                                        
Query: 5337 gcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctga 5396
            |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 581  gcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacctga 522

                                                                        
Query: 5397 ggtcaggagttcaagaccagcctggccaacacggtgaaaccccatctctactaaaaatat 5456
            ||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| 
Sbjct: 521  ggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctactaaaaatac 462

                                                                        
Query: 5457 aaaaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggagactgagg 5516
            ||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||
Sbjct: 461  aaaaaattagctgggcatggtggctcacgcctgtagtcccagctactcgggaggctgagg 402

                                                                        
Query: 5517 caggagaatggcatgaacctgggaggcggagcttgcagtgagccgagatcgcgtcactgc 5576
            |||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 401  caggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgc 342

                                               
Query: 5577 actccagcctgggcgacagagagagactccgtctc 5611
            |||||||||||||||||||||  ||||||| ||||
Sbjct: 341  actccagcctgggcgacagagcaagactccatctc 307



 Score =  396 bits (200), Expect = e-108
 Identities = 254/272 (93%)
 Strand = Plus / Minus

                                                                        
Query: 5340 gtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggt 5399
            ||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||
Sbjct: 1494 gtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggt 1435

                                                                        
Query: 5400 caggagttcaagaccagcctggccaacacggtgaaaccccatctctactaaaaatataaa 5459
            ||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1434 caggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaa 1375

                                                                        
Query: 5460 aaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggagactgaggcag 5519
            ||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct: 1374 aaattagctgggcgtggtggcgggcgcctgtaatcccagctactcaggaggctgaggcag 1315

                                                                        
Query: 5520 gagaatggcatgaacctgggaggcggagcttgcagtgagccgagatcgcgtcactgcact 5579
            ||||||||| |||||| |||||| |||||||||||||||||||||| | | |||||||||
Sbjct: 1314 gagaatggcgtgaacccgggaggtggagcttgcagtgagccgagattgtgccactgcact 1255

                                            
Query: 5580 ccagcctgggcgacagagagagactccgtctc 5611
            |||||||||||||||||| |||||||||||||
Sbjct: 1254 ccagcctgggcgacagagcgagactccgtctc 1223



 Score =  383 bits (193), Expect = e-104
 Identities = 253/273 (92%)
 Strand = Plus / Minus

                                                                        
Query: 5339 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagg 5398
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 878  ggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgagg 819

                                                                        
Query: 5399 tcaggagttcaagaccagcctggccaacacggtgaaaccccatctctactaaaaatataa 5458
            ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct: 818  tcaggagatcaagaccagcctgggcaacacggtgaaaccccgtctctactaaaaatacaa 759

                                                                        
Query: 5459 aaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggagactgaggca 5518
            |||||||||  |  ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 758  aaaattagccagcaatggtggcgggcgcctgtagtcccagctactcgggaggctgaggca 699

                                                                        
Query: 5519 ggagaatggcatgaacctgggaggcggagcttgcagtgagccgagatcgcgtcactgcac 5578
            |||||||||| |||||| |||||| |||||||||||||||||||||||||  ||||||||
Sbjct: 698  ggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcac 639

                                             
Query: 5579 tccagcctgggcgacagagagagactccgtctc 5611
            |||||||||||| ||||||  |||||| |||||
Sbjct: 638  tccagcctgggcaacagagcaagactctgtctc 606



 Score =  369 bits (186), Expect = e-100
 Identities = 252/273 (92%), Gaps = 2/273 (0%)
 Strand = Plus / Plus

                                                                         
Query: 11405 gagatggagtctcgctctgtcacccaggctggagtgctgtggcacgatctcggctcactg 11464
             |||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct: 307   gagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactg 366

                                                                         
Query: 11465 caagctctgcctcccaggttcacgccattctcctgcctcagcctcccgaatagctgggac 11524
             |||||||  |||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 367   caagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggac 426

                                                                         
Query: 11525 tacaggagcccgccaccacgcctggctaattttttgtatttttagtagagacggggtttc 11584
             |||||| |   ||||||| |||  ||||||||||||||||||||||||||| ||||||||
Sbjct: 427   tacaggcgtgagccaccatgcccagctaattttttgtatttttagtagagatggggtttc 486

                                                                         
Query: 11585 accgtgttagccaggatggtctcgatctcctgacctca--tgatccgcctgcctcggcct 11642
             |||||||||||||||||||||| |||||||||||||||  |||||||||  |||||||||
Sbjct: 487   accgtgttagccaggatggtcttgatctcctgacctcaggtgatccgcccacctcggcct 546

                                              
Query: 11643 cccaaagtgctgggattacaggcgtgagccacc 11675
             |||||||||||||||||||||||||||||||||
Sbjct: 547   cccaaagtgctgggattacaggcgtgagccacc 579