Processed sequence:genomi >AC025106.00003 invers complementaer
inklusive des ersten angegebenen Exon zur DKK-sequenz
1 CAAGCCTGAAGGCCAGATAAGACGGGCCTAGGATGCCGCGGAGACAGGGA
51 CAGTCAGTGAAGCAGATGTCTGCTTACGGTAGAGCTGGTAGCTGAGCCAG
101 AACAGAAGGGCGGGGGGCGTGGGGCGTCAGGTGTCAGGCGCCCCGGCTGG
151 ACAATGACCGGGATGAGGCCCCTCTGCGGGGCGGGGTGGGCATGGTGGGC
201 GGGCGGGGCTCGGGGCGGGGGCGGAGAGGGAGCCTGGTGGGCGGGCGGGG
251 CGCGTCTTGCGGGCTCCCTCGGGTACCGGCGCTGCCGCACCCCGCCGCGC
301 TCCCGCACCCGCGGCCCGCCCACCGCGCCGCTCCCGCATCTGCACCCGCA
351 GCCCGGCGGCCTCCCGGCGGGAGCGAGCAGATCCAGTCCGGCCCGCAGCG
401 CAACTCGGTCCAGTCGGGGTGGGTGAGGGGCGGCGGCGGGGGAGGGGACG
451 ACTCTGCTGAGCTCAGCCTCTCTTGGTGGATGTGGGGCGGGGCGCTCGAG
501 TAGGACCCGACGCCAAGGGGAGGGGGCTGACCTGTGCTTGGTCCACCCCA
551 GGTAGGGGCTGAGAGAGGCTTGAGGTGGAAGTGGGGGTCGGGCACTCTGA
601 CCTGGTCGAGGAGGGGCTAGGGTTTGAACCGGGGACAGAGTCTAGGTGAG
651 CTGGGGCTTGGGAGCTATTAGCGTAGAGGATCCGGGTTCGGTTGCTCTGG
701 CGAGGGCTCCAGCATCACAGGTGAGGAGCAGAGCTCAGCTTGTGCTCGAG
751 GATGGGGGTGCGGGGTCCTGGGGCGATCGGGGCTCGGGCTGGAGCGGGTG
801 GGGTCGCGTCTTTTCGGGTGTAGGGGAGCTGCGTTTTCAGGGGCCTCGGT
851 TTCCTCCCGTCTCCGGGCGGGTGCGGGAAAGAGGGGCGCCAGGGGCGGGC
901 GGCGGGGCGGAACGGGGCGGGGCGGCGGGCCCAGCGAGGGGGGTGGTCCG
951 CGCGCCTCTGATCGCGTTCCGGGACACACAGGCGGCGGCTGCGGGCGCAG
1001 AGCGGAGATGCAGCGGCTTGGGGCCACCCTGCTGTGCCTGCTGCTGGCGG
1051 CGGCGGTCCCCACGGCCCCCGCGCCCGCTCCGACGGCGACCTCGGCTCCA
1101 GTCAAGCCCGGCCCGGCTCTCAGCTACCCGCAGGAGGAGGCCACCCTCAA
1151 TGAGATGTTCCGCGAGGTTGAGGAACTGATGG
Promoter predictions with berkleys for 1 eukaryotic sequence with score cutoff 0.80 (transcription start shown in larger font):
Promoter predictions for seq0
:
Start End Score Promoter Sequence
7 57 0.99 CAAGCCTGAAGGCCAGATAAGACGGGCCTAGGATGCCGCGGAGACAGGG
283 333 0.87 CCGGCGCTGCCGCACCCCGCCGCGCTCCCGCACCCGCGGCCCGCCCACCG
867 917 0.91 TCTCCGGGCGGGTGCGGGAAAGAGGGGCGCCAGGGGCGGGCGGCGGGGCG
894 944 0.86 CGCCAGGGGCGGGCGGCGGGGCGGAACGGGGCGGGGCGGCGGGCCCAGCG
Proscan: Version 1.7
Processed Sequence: 1182 Base Pairs
Promoter region predicted on forward strand in 15 to 265
Promoter Score: 142.72 (Promoter Cutoff = 53.000000)
Significant Signals:
Name TFD # Strand Location Weight
SIF S02021 - 26 1.161000
JCV_repeated_sequenc S01193 + 108 1.427000
Sp1 S00978 + 108 3.013000
Sp1 S00781 + 109 3.191000
NGFI-C S01813 + 110 6.885000
Sp1 S00802 - 113 3.061000
T-Ag S00974 + 114 1.086000
Sp1 S00801 - 114 3.119000
AP-2 S01936 - 115 1.091000
EARLY-SEQ1 S01081 - 115 5.795000
(Sp1) S01187 - 115 6.819000
AP-2 S00346 - 117 1.672000
(Sp1) S01027 - 120 2.233000
GCF S01964 + 138 2.361000
glucagon-G3A S02046 - 140 1.324000
Sp1 S00979 + 178 6.023000
Sp1 S00327 + 178 51.633999
Sp1 S00064 + 178 10.681000
Sp1 S01542 + 178 6.661000
PuF S02016 + 184 1.082000
Sp1 S00978 + 197 3.013000
Sp1 S00781 + 198 3.191000
JCV_repeated_sequenc S01193 + 201 1.427000
Sp1 S00802 - 202 3.061000
Sp1 S00801 - 203 3.119000
T-Ag S00974 + 205 1.086000
AP-2 S00346 - 206 1.672000
AP-2 S01936 - 208 1.091000
EARLY-SEQ1 S01081 - 208 5.795000
(Sp1) S01187 - 208 6.819000
APRT-mouse_US S00216 - 209 7.604000
Sp1 S00953 - 209 5.737000
Sp1 S00326 + 212 3.129000
KROX24 S01623 + 215 2.151000
(Sp1) S00857 + 217 4.589000
Sp1 S00977 + 219 7.086000
Sp1 S00956 - 221 3.129000
EGR-1 S01956 - 223 2.294000
KROX24 S01624 - 223 1.912000
EGR-2 S01957 - 224 3.442000
GCF S01964 + 245 2.361000
GCF S01964 - 253 2.284000
Promoter region predicted on forward strand in 847 to 1097
Promoter Score: 73.81 (Promoter Cutoff = 53.000000)
This promotor has to be favorised: as most of the ESTs found in the dbEST start around 1000nt:
Significant Signals:
Name TFD # Strand Location Weight
JCV_repeated_sequenc S01193 - 858 1.658000
Sp1 S00978 + 865 3.013000
Sp1 S00781 + 866 3.191000
Sp1 S00802 - 870 3.061000
Sp1 S00801 - 871 3.119000
T-Ag S00974 + 883 1.086000
GCF S01964 - 889 2.284000
Sp1 S00979 + 892 6.023000
AP-2 S01936 - 895 1.091000
GCF S01964 + 902 2.361000
AP-2 S00346 - 902 1.672000
Sp1 S01542 + 904 6.661000
Sp1 S00064 + 904 10.681000
JCV_repeated_sequenc S01193 + 905 1.427000
APRT-mouse_US S00216 - 908 7.604000
EARLY-SEQ1 S01081 - 912 5.795000
Sp1 S00645 + 914 12.906000
Sp1 S01189 + 918 34.423000
(Sp1) S01187 - 922 6.819000
SDR_RS S01561 + 938 1.554000
H4TF-2 S02114 + 943 2.459000
T-Ag S00974 + 1020 1.086000
AP-2 S01936 - 1022 1.091000
AP-2 S00346 + 1057 1.355000
AP-2 S01936 + 1058 1.108000
UCE.2 S00437 - 1067 1.216000
myosin-specific S00608 - 1090 1.115000