Score E
Sequences producing significant alignments: (bits) Value
ref|NP_055601.1| KIAA0337 gene product [Homo sapiens] >gi|2... 1058 0.0
ref|NP_031755.1| procollagen, type XI, alpha 1 [Mus musculu... 56 1e-06
pir||S33596 protein-tyrosine kinase (EC 2.7.1.112) - human ... 56 1e-06
ref|NP_045241.1| 24 [Equine herpesvirus 4] >gi|11278231|pir... 55 2e-06
pir||T35389 probable serine-threonine protein kinase - Stre... 55 2e-06
pir||T10741 extensin-like protein PRP5 - Persian tobacco >g... 52 1e-05
pir||I51618 nucleolar phosphoprotein - African clawed frog ... 51 3e-05
sp|P04258|CA13_BOVIN COLLAGEN ALPHA 1(III) CHAIN >gi|71410|... 50 6e-05
gb|AAF04726.1| (AF101112) collagen type XI alpha-a isoform ... 50 8e-05
gb|AAF04725.1| (AF101112) collagen type XI alpha-1 isoform ... 50 8e-05
gb|AAF04724.1| (AF101112) collagen type XI alpha-1 [Homo sa... 50 8e-05
ref|NP_001845.1| collagen, type XI, alpha 1; Collagen XI, a... 50 8e-05
ref|NP_031764.1| procollagen, type VII, alpha 1 [Mus muscul... 49 1e-04
gb|AAD09141.1| (U67056) myosin I heavy chain kinase [Acanth... 49 1e-04
ref|NP_045322.1| very large virion protein (tegument) [Bovi... 49 1e-04
gb|AAA49678.1| (M63595) alpha-1 type II collagen [Xenopus l... 49 1e-04
dbj|BAA92544.1| (AB037727) KIAA1306 protein [Homo sapiens] 48 2e-04
dbj|BAA20797.2| (AB002337) KIAA0339 protein [Homo sapiens] 48 2e-04
gb|AAD55980.1|AF159297_1 (AF159297) extensin-like protein [... 48 2e-04
gb|AAD49970.1|AC008075_3 (AC008075) F24J5.4 [Arabidopsis th... 48 2e-04
pir||T43556 Wiskott-Aldrich syndrome protein homolog - fiss... 48 2e-04
ref|NP_038636.1| nascent polypeptide-associated complex alp... 48 2e-04
pir||S49915 extensin-like protein - maize >gi|600118|emb|CA... 48 2e-04
emb|CAB60727.1| (Y19188) aczonin [Homo sapiens] 48 2e-04
pir||T38819 wiskott-aldrich syndrome protein homolog 1 - fi... 48 2e-04
gb|AAA28967.1| (K02623) tropomyosin isoform 34 (9B) [Drosop... 48 2e-04
pir||A40333 collagen alpha 1'(II) chain precursor - African... 48 2e-04
pir||S23809 collagen alpha 2(I) chain homolog - sea urchin ... 48 3e-04
gb|AAF50773.1| (AE003565) CG10625 gene product [Drosophila ... 47 4e-04
pir||T28770 hypothetical protein W03D2.1 - Caenorhabditis e... 47 4e-04
pir||A41182 collagen alpha 1(II) chain precursor - mouse 47 4e-04
pir||B41182 collagen alpha 1(II) chain precursor (long spli... 47 4e-04
dbj|BAA99921.1| (AP001306) contains similarity to cell wall... 47 5e-04
gb|AAF76433.1|AF272662_1 (AF272662) alpha 1 type V collagen... 47 5e-04
pir||S18803 collagen alpha 1(V) chain - hamster 47 5e-04
dbj|BAA81686.1| (AB029147) expressed in cucumber hypocotyls... 47 5e-04
ref|NP_056549.1| procollagen, type V, alpha 1 [Mus musculus... 47 5e-04
gb|AAA93320.1| (U46069) fertilin alpha subunit [Oryctolagus... 47 5e-04
sp|P41110|IF4G_RABIT EUKARYOTIC TRANSLATION INITIATION FACT... 47 5e-04
gb|AAA49679.1| (M63596) alpha-1 type II' collagen [Xenopus ... 47 5e-04
gb|AAA37002.1| (M76730) pro-alpha-1 type V collagen [Cricet... 47 5e-04
sp|P20909|CA1B_RAT COLLAGEN ALPHA 1(XI) CHAIN >gi|92640|pir... 47 5e-04
gb|AAG10075.1|AF294428_1 (AF294428) membrane virion glycopr... 46 7e-04
dbj|BAA82043.1| (AB022046) alpha1 type II collagen [Cynops ... 46 7e-04
emb|CAA06511.1| (AJ005396) collagen alpha 1 (XI) [Rattus no... 46 7e-04
pir||S52985 cell wall protein - alfalfa >gi|3818416|gb|AAD0... 46 7e-04
emb|CAA28454.1| (X04758) pro- alpha (V)collagen (AA 1099) [... 46 0.001
ref|NP_000384.1| collagen, type V, alpha 2; Collagen V, alp... 46 0.001
gb|AAB94077.2| (AF111796) adhesin [Bordetella bronchiseptica] 46 0.001
pir||CGHU1V collagen alpha 1(V) chain precursor - human >gi... 46 0.001
>ref|NP_055601.1| KIAA0337 gene product [Homo sapiens]
dbj|BAA20795.1| (AB002335) KIAA0337 [Homo sapiens]
Length = 1510
Score = 1058 bits (2707), Expect = 0.0
Identities = 517/517 (100%), Positives = 517/517 (100%)
Query: 1 MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQDDGS 60
MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQDDGS
Sbjct: 1 MARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQDDGS 60
Query: 61 DAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSS 120
DAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSS
Sbjct: 61 DAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSS 120
Query: 121 SSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRS 180
SSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRS
Sbjct: 121 SSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRS 180
Query: 181 LSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEES 240
LSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEES
Sbjct: 181 LSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEES 240
Query: 241 KGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV 300
KGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV
Sbjct: 241 KGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREV 300
Query: 301 EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADIL 360
EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADIL
Sbjct: 301 EPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADIL 360
Query: 361 SPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE 420
SPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE
Sbjct: 361 SPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE 420
Query: 421 PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLA 480
PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLA
Sbjct: 421 PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLA 480
Query: 481 APPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHV 517
APPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHV
Sbjct: 481 APPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHV 517
>ref|NP_031755.1| procollagen, type XI, alpha 1 [Mus musculus]
sp|Q61245|CA1B_MOUSE COLLAGEN ALPHA 1(XI) CHAIN PRECURSOR
dbj|BAA07367.1| (D38162) mouse a1(XI) collagen chain [Mus musculus]
Length = 1804
Score = 55.8 bits (132), Expect = 1e-06
Identities = 90/376 (23%), Positives = 133/376 (34%), Gaps = 54/376 (14%)
Query: 52 MGAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLG 110
+G + + G PG P AG +G+R ++ +GP + GI P G
Sbjct: 1249 VGDKGEPGEAGNPGPPGEAGSGGLKGERGEKGEAGPPGAAGPAGIKGPPGDD-------G 1301
Query: 111 TTGMWRPLS--SSSAQTNHHGPGTEDSLGG--WALVSPETPPTPGALRRRR------KVP 160
G P+ GP +D +GG P P PG K
Sbjct: 1302 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRG 1361
Query: 161 PSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSP--KTGLPA 218
P G+ GSE GE G + ++ P + + P+G L G P + GLP
Sbjct: 1362 PPGASGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPG 1421
Query: 219 TSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAP 270
+ D GL D GS+ KG+ +I ++ PG G D + G
Sbjct: 1422 AAGQDGPPGPLGPPGLPGLKGD--PGSKGEKGHPGLI-GLIGPPGEQGEKGDRGLPG--- 1475
Query: 271 KKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRA 330
S P +G+ PG GP G P PP P + G T +
Sbjct: 1476 ---SQGSPGAKGDGGIPGPAGPIGPPG-------PPGLPGP--AGPKGNKGSSGPTGQKG 1523
Query: 331 QSERALPEALP-PPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQD 389
S P P PP + P ILSP+ RR ++ + L +G ++
Sbjct: 1524 DSGMPGPPGPPGPPGEV-----IQP--LPILSPKKTRRHTESIQGDAGDNILDYSDGMEE 1576
Query: 390 QTGSLSRARPSSRHVR 405
GSL+ + H++
Sbjct: 1577 IFGSLNSLKQDIEHMK 1592
Score = 33.6 bits (75), Expect = 5.3
Identities = 62/248 (25%), Positives = 84/248 (33%), Gaps = 45/248 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + G D PPG P G+R + GP+ + G P P A GL
Sbjct: 899 GPKGTSGGDGPPGPP--------GERGPQ---GPQGPVGFPGPKGPPGP--AGKDGLPGH 945
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP-TPGALRRRRKVPPSGSGGSEFSN 171
R + +T GPG +V P+ P G + R P G G +
Sbjct: 946 PGQRGETGFQGKTGPPGPG--------GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 997
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
G AG+ + DP PQ + + P G + + GLP GL G
Sbjct: 998 GAAGKE-GAKGDPGPQG--ISGKDGPAG-------IRGFPGERGLPGAQGAP-GLKGG-- 1044
Query: 232 DWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEG 291
E +G Q + S PG G G + P GE PG +G
Sbjct: 1045 ------EGPQGPQGPVGS----PGERGSAGAAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1094
Query: 292 PGGEPIRE 299
P G R+
Sbjct: 1095 PQGPAGRD 1102
Score = 33.2 bits (74), Expect = 7.0
Identities = 64/264 (24%), Positives = 96/264 (36%), Gaps = 37/264 (14%)
Query: 51 RMGAQQDDGSDAPPGSP-----DWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAA 105
R G DG PPG+ + GD ++G + + ++ L I P
Sbjct: 474 RPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGP-- 531
Query: 106 FCGLGTTGMWRPLS---SSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPS 162
+G TG P+ S+ A+ PG + G + PP P +R P
Sbjct: 532 ---MGLTGRPGPVGGPGSTGAKGESGDPGPQGPRG------VQGPPGPTGKPGKRGRP-- 580
Query: 163 GSGGSEFSNGEAGEAYRSLSDPIP-----QRHRAATSEE-PTGFSVDSNLLGS---LSPK 213
G+ G GE+G D +P + HR + P G D + G + P+
Sbjct: 581 GADGGRGMPGESGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPR 640
Query: 214 TGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGP-GTLGRVVDDRIAGKAPKK 272
GLP A GL + G G + QGP G +G + G+
Sbjct: 641 -GLPG-EAGPRGLLGPRG--TPGPPGQPGIGGIDGP--QGPKGNMGPQGEPGPPGQQGNP 694
Query: 273 KSLSDPSRRGELAGPGFEGPGGEP 296
S P +G + PG +GP G+P
Sbjct: 695 GSQGLPGPQGPIGPPGEKGPQGKP 718
>pir||S33596 protein-tyrosine kinase (EC 2.7.1.112) - human
prf||1914275A non-receptor Tyr kinase [Homo sapiens]
Length = 1091
Score = 55.8 bits (132), Expect = 1e-06
Identities = 107/460 (23%), Positives = 163/460 (35%), Gaps = 65/460 (14%)
Query: 63 PPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSSSS 122
P PD R + L G + D + D +P + F LG P
Sbjct: 546 PMDPPDLLSVELSTSRPPQHLGGVKKPTYDP-VSEDQDPLSSDFKRLGLRKPGLPRGLWL 604
Query: 123 AQTNHHGPGTEDSLGGWALVS-------PETPP-----TPGALRRRRKVPPSGSGGSEFS 170
A+ + PGT+ S G A V+ P PP PGA R +P SE
Sbjct: 605 AKPSARVPGTKASRGSGAEVTLIDFGEEPVVPPYGPAALPGAAGHGRLLPAGRDPASEPH 664
Query: 171 NGEAGEAY---------RSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSA 221
G A + R L P A ++ S++S L+G+ G+PA
Sbjct: 665 AGTARPLHPTPVVDWDARPLPPPPAYDDVAQDEDDFEICSINSTLVGA-----GVPA--- 716
Query: 222 MDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRR 281
G + G ++++ E+++ + ++ P G+ A A ++L R
Sbjct: 717 ---GPSQGQTNYAFVPEQARPPPPLEDNLFLPPQGGGKPPSS--AQTAEIFQALQQECMR 771
Query: 282 GELAGPGFEGPGGEPIREVEPMLPPS---SSEPILVEQRAEPEEPGATRSRAQSERALPE 338
+L PG P P + +P +PP P + P PG + A P
Sbjct: 772 -QLQAPGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPGPASPP 830
Query: 339 ALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRAR 398
+PP L P+ + SP L+ GS P R S + +Q A
Sbjct: 831 RVPPREP------LSPQGSRTPSP-LVPPGSSPLPPRLSSSPGKTMPTTQSFASDPKYAT 883
Query: 399 PSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYM 458
P A P +PIV S +PE PS + ++++
Sbjct: 884 PQVIQAPGAGGPC-ILPIVRDGKKVSSTHYYLLPE-------------RPSYLERYQRFL 929
Query: 459 LNLHSGEVPAPVPVDM----PCLPLAAPPSAEAKP-PEAA 493
S E P P+PV + P P A P+A +P P+AA
Sbjct: 930 REAQSPEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAA 969
>ref|NP_045241.1| 24 [Equine herpesvirus 4]
pir||T42567 tegument protein 24 - equine herpesvirus 4 (strain NS80567)
gb|AAC59539.1| (AF030027) 24 [Equine herpesvirus 4]
Length = 3534
Score = 55.0 bits (130), Expect = 2e-06
Identities = 91/391 (23%), Positives = 136/391 (34%), Gaps = 46/391 (11%)
Query: 142 VSPETPPTPGALRRR----------RKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRA 191
VSP TPP P A + + +PPS + N + +L +PQ
Sbjct: 2546 VSP-TPPLPAATEKLSSINTQSPSDKNIPPSNTKTQPPDNRLPVPSENNLPHFVPQ---- 2600
Query: 192 ATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGS-EESKGYQEVIQSI 250
T PT S ++ S G PA E + ++ +VGS ++ +V+Q
Sbjct: 2601 -TPAPPTDTSKPCTVIQS-QQNLGTPAPQKEPEKKPTNNASTAVGSTNKTTDEPQVVQPP 2658
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSR---RGELAGPGFEGPGGEPIREVEPMLPPS 307
+ + K +KSLS P R R L F P G I ++ + PP
Sbjct: 2659 SKNASEANNI-------KQLNEKSLSKPWRPSIRPSLGPFKFTAPPGYSI-PMDGLPPPD 2710
Query: 308 SSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRR 367
+E +L P ++ A + P A P P+ P A S
Sbjct: 2711 PNEALLTAPSKPAAAPAPSKPAAAPAPSKPAAAPAPS--------KPAAAPAPSKPAAAP 2762
Query: 368 GSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHV--RHASVPATFMPIVVPEPPTSV 425
K A + + + + ++P++ + A+ PA P P P
Sbjct: 2763 APSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPA 2822
Query: 426 GPPVAVPEPIGFPTRAHP-TLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAP-P 483
P A +P P + P APS + P P P AAP P
Sbjct: 2823 AAP-APSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAP 2881
Query: 484 SAEAKPPEAARPADEPTP----ASKCCSKPQ 510
S A P ++PA P P A+ SKPQ
Sbjct: 2882 SKPAAAPAPSKPAAAPAPSKPAAAPAPSKPQ 2912
>pir||T35389 probable serine-threonine protein kinase - Streptomyces coelicolor
emb|CAB45488.1| (AL079348) putative serine-threonine protein kinase [Streptomyces
coelicolor A3(2)]
Length = 783
Score = 54.7 bits (129), Expect = 2e-06
Identities = 67/256 (26%), Positives = 87/256 (33%), Gaps = 33/256 (12%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
GA G PP P G + ++G + G +PP G
Sbjct: 494 GADPASGGPPPPREPGSGGGAPLNHLPTQ-VAGRHPATPPPGAHGHAQPPAP---GYDPA 549
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGA-----LRRRRK--------- 158
W ++Q H P D GG P+ PP P +R R
Sbjct: 550 PAWH-----ASQPGHQHP--YDGGGGLGPTPPQGPPPPYGPPHEPVRNGRSTALLIVVAL 602
Query: 159 VPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPA 218
V G+GGS ++ + R+ DP P R A + TG S S G SP TG
Sbjct: 603 VVALGAGGSVYALMRGDDDGRAGGDPTPTRSTGAPQDPGTGASGSSGATGGRSPSTG--- 659
Query: 219 TSAMDEGL--TSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLS 276
A DEG T DWS + + G SIV PG +G V +A +
Sbjct: 660 -PAADEGTVPTGYLGDWSTSIDNASGTHPRTLSIV--PGEVGDTVLTLVADGPTDTGTYH 716
Query: 277 DPSRRGELAGPGFEGP 292
A PG GP
Sbjct: 717 CVFEAALTAEPGSGGP 732
>pir||T10741 extensin-like protein PRP5 - Persian tobacco
gb|AAC15893.1| (U88587) 120 kDa style glycoprotein [Nicotiana alata]
Length = 461
Score = 52.3 bits (123), Expect = 1e-05
Identities = 58/234 (24%), Positives = 85/234 (35%), Gaps = 39/234 (16%)
Query: 268 KAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATR 327
K+P P P + P P ++ P PPS+ P+ +P P
Sbjct: 91 KSPPPPPAKSPPLPPPPVQPPKQSPPPSPAKQPPPP-PPSAKPPV------KPPSPSPAA 143
Query: 328 SRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGS 387
++RA P + PPP PKL L P + ++ P ++ +R+
Sbjct: 144 QPPATQRATPPSQPPPMQRAP----PPKLP--LPPPPAQLPIRQPPPPATQLPIRKPPP- 196
Query: 388 QDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQA 447
P+ +R PAT +PI P PP PP P P P R+ P Q
Sbjct: 197 -----------PAQLPIRQPPPPATQLPIRKPPPPAYTQPPFKTPPPP--PIRSSPPPQD 243
Query: 448 PSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPP--EAARPADEP 499
E + PAP P P+ PP ++ +PP E P D+P
Sbjct: 244 AYDEPPVVE--------SPPAPPSDHDP--PVVEPPPSDYEPPIIEPTPPTDQP 287
>pir||I51618 nucleolar phosphoprotein - African clawed frog
emb|CAA61368.1| (X88927) nucleolar phosphoprotein [Xenopus laevis]
prf||2201454A nucleolar phosphoprotein Nopp180 [Xenopus laevis]
Length = 990
Score = 51.2 bits (120), Expect = 3e-05
Identities = 117/546 (21%), Positives = 174/546 (31%), Gaps = 72/546 (13%)
Query: 2 ARRLPRTSALKSSSSELLLTGPGAEEDPLPLIVQDQYVQEARQVFEKIQRMGAQQ--DDG 59
A LP+ + K SSS +EED P + Q + V + +Q A+ +D
Sbjct: 67 ANGLPKKKSAKESSSS---EDSSSEEDEPPAKKRAQPAGGKKPVVKAVQPKKAKSSSEDS 123
Query: 60 SDA--------------PPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPE----P 101
SD P +P A T Q+ + S SS DE P
Sbjct: 124 SDESDSEEETKKPPAKRPAQTPKVAAVKTPTQKKAKSSSSESSSSEDEASKKKQPVIKVP 183
Query: 102 PVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPP 161
P A G + SS+ + P + + A +P T P A + +K
Sbjct: 184 PKQAVVKAGLASNNGKTADSSSSEDSDSPPAKKTA---ATKTPPTKPATAAKPQAKKTAG 240
Query: 162 SGSGGSEFSNGEAGEAYRSL-SDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATS 220
S E S+ + E ++ S P P + A PT S L P T
Sbjct: 241 KKSSSREDSSDSSDEEQKTAKSKPKPDVYSAVPP--PTSVSKKKTL--------SQPGTK 290
Query: 221 AMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPK---KK---- 273
A E SD S S+E + P ++V + A APK KK
Sbjct: 291 AKPES-----SDSSDSSDEE-----------EQPAKKAKIVPAKAAASAPKPLAKKAETS 334
Query: 274 --SLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQ 331
S SD S E G P + P P + S P+ +++ P + ++ S +
Sbjct: 335 TDSESDSSSEDEKKSSVKLGVKAAPKKA--PAAPDAKSTPVAAAKKSAPAKKASSSSDSD 392
Query: 332 SERALPEALPPPA--TAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQD 389
S P A T ++ + +P ++D S D
Sbjct: 393 SSSNEETTTKPAAKTTPAKSAATPTSKTPTNGKATPTSKTPAKPGTPKTSTAKKDSSSSD 452
Query: 390 QTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPS 449
+ S S +++ A P PTS P + P T A P S
Sbjct: 453 SSDSSSDEETTTKPA------AKTTPAKSAATPTSKTPTNSKATPTSKKTPAKPGTPKTS 506
Query: 450 LEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKP 509
+ S P A P+A+ P + A PA+K
Sbjct: 507 AAKKDSSSSDSSDSSSDEKKTPAKRAAKTTPAKPAAKTTPAKPAAKTTPAKPAAKSTPGK 566
Query: 510 QVDMRK 515
QV +K
Sbjct: 567 QVPTKK 572
>sp|P04258|CA13_BOVIN COLLAGEN ALPHA 1(III) CHAIN
pir||CGBO7S collagen alpha 1(III) chain - bovine
Length = 1049
Score = 50.0 bits (117), Expect = 6e-05
Identities = 95/397 (23%), Positives = 127/397 (31%), Gaps = 81/397 (20%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPL 118
G P G P + G +G R + +G + G+ + P G G P+
Sbjct: 93 GMKGPAGMPGFPG--MKGHRGFDGRNGEKGEPGAPGLKGENGVP-------GEDGAPGPM 143
Query: 119 SSSSAQTNHHGPG---------TEDSLGGWALVSPETPPT----PGALRRRRKVPPSGSG 165
A PG + + G P PP PG+ + +V P+GS
Sbjct: 144 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 203
Query: 166 GSEFSNGEAGEAYRSLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPKTGLPATSAMDE 224
GS + G+ GE P PQ H A P G G + P G+P +
Sbjct: 204 GSSGAPGQRGE-------PGPQGHAGAPGPPGPPGSDGSPGGKGEMGP-AGIPGAPGL-- 253
Query: 225 GLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPS---RR 281
+G+ G PGT G AG+ K + DP R
Sbjct: 254 ----------IGARGPPG----------PPGTNGVPGQRGAAGEPGKNGAKGDPGPRGER 293
Query: 282 GELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALP 341
GE PG GP GE ++ P P ++ P +R P G LP
Sbjct: 294 GEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPA-----GANGLPGEKG 348
Query: 342 PPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSS 401
PP D PR + G R LR GS GS + P
Sbjct: 349 PPG--------DRGGPGPAGPRGV-AGEPGRNGLPGGPGLRGIPGSPGGPGSNGKPGP-- 397
Query: 402 RHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFP 438
P + P PP S GP P +GFP
Sbjct: 398 --------PGSQGETGRPGPPGSPGPR-GQPGVMGFP 425
Score = 48.8 bits (114), Expect = 1e-04
Identities = 77/290 (26%), Positives = 99/290 (33%), Gaps = 50/290 (17%)
Query: 53 GAQQDDGSDAPPGSPDWAG-DVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGT 111
GA+ DG PPG P AG + G + + +G S G +P P A G
Sbjct: 168 GARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSSGAPGQRGEPGPQGHA----GA 223
Query: 112 TGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPE-TPPTPGALRRRRKVPPSGSGGSEFS 170
G P PG++ S GG + P P PG + R P G+ G
Sbjct: 224 PGPPGP------------PGSDGSPGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGVPGQ 271
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSP-----KTGLPATSAMDEG 225
G AGE P ++ A P G ++ G P K G P + G
Sbjct: 272 RGAAGE---------PGKNGAKGDPGPRGERGEAGSPGIAGPKGEDGKDGSPGEPGAN-G 321
Query: 226 LTSGHSDWSV-GSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGEL 284
L + V G G + PG G D G A + +P R G
Sbjct: 322 LPGAAGERGVPGFRGPAGANGL-------PGEKGPPGDRGGPGPAGPRGVAGEPGRNGLP 374
Query: 285 AGPGFEG-PG--GEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQ 331
GPG G PG G P +P P S E P PG+ R Q
Sbjct: 375 GGPGLRGIPGSPGGPGSNGKPGPPGSQGE------TGRPGPPGSPGPRGQ 418
Score = 36.7 bits (83), Expect = 0.61
Identities = 70/275 (25%), Positives = 94/275 (33%), Gaps = 31/275 (11%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
GA +G PG P G G+ + GP G D PP G
Sbjct: 432 GAPGKNGERGGPGGPGPQGPA--GKNGETGPQGPPGPTGPSGDKGDTGPP-------GPQ 482
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNG 172
G+ + L +S +G E G A +P P G + P G+GG G
Sbjct: 483 GL-QGLPGTSGPPGENGKPGEPGPKGEA-GAPGIPGGKGDSGAPGERGPPGAGGPPGPRG 540
Query: 173 EAGEAYRSLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
AG P P+ + A P G + L G + G + G S
Sbjct: 541 GAGP-------PGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSS 593
Query: 232 --DWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGF 289
D + G + +G I PG G+ D +G AP ++ P RG GPG
Sbjct: 594 GVDGAPGKDGPRGPTGPIGP----PGPAGQPGDKGESG-APGVPGIAGP--RG---GPGE 643
Query: 290 EGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G G P P P + EP +R P E G
Sbjct: 644 RGEQGPPGPAGFPGAPGQNGEPGAKGERGAPGEKG 678
>gb|AAF04726.1| (AF101112) collagen type XI alpha-a isoform B [Homo sapiens]
Length = 1818
Score = 49.6 bits (116), Expect = 8e-05
Identities = 92/396 (23%), Positives = 135/396 (33%), Gaps = 72/396 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTR-GQRSQEELSGPESSLTDEGIGA---------DPEPP 102
G Q +G+D P G P G V G++ + +G + G+G + PP
Sbjct: 1240 GPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1299
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTN--------------HHGPGTEDSLGG--WALVSPET 146
AA G G P + N GP +D +GG P
Sbjct: 1300 GAA----GPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGPAGQDGVGGDKGEDGDPGQ 1355
Query: 147 PPTPGALRRRR------KVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF 200
P PG K P G+ G+E GE G + ++ P + + P G
Sbjct: 1356 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 201 SVDSNLLGSLSP--KTGLPATSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSI 250
L G P + GLP + D GL D GS+ KG+
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD--PGSKGEKGH------- 1466
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSE 310
PG +G + G ++ D G PG +G GG P P+ PP
Sbjct: 1467 ---PGLIGLI------GPPGEQGEKGDRGLPGTQGSPGAKGDGGIP-GPAGPLGPPGP-- 1514
Query: 311 PILVEQRAEPEEPGATRSRAQS-ERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGS 369
P L + G+T Q + LP PP P ILS + RR +
Sbjct: 1515 PGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLP----ILSSKKTRRHT 1570
Query: 370 KKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
+ A + L +G ++ GSL+ + H++
Sbjct: 1571 EGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMK 1606
Score = 37.9 bits (86), Expect = 0.27
Identities = 69/275 (25%), Positives = 89/275 (32%), Gaps = 64/275 (23%)
Query: 53 GAQQDDGSDAPPGSPDW----------AGDVTRGQRSQEELSGPESSLTDEGIGADPEPP 102
G++ D G + PPG P GD G R Q+ + G + DEG P PP
Sbjct: 1150 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG---DEGARGFPGPP 1206
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP----GALRRRRK 158
+G G+ P PG + G + P PP P G
Sbjct: 1207 GP----IGLQGLPGP------------PGEKGENGDVGPMGPPGPPGPRGPQGPNGADGP 1250
Query: 159 VPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSP--KTGL 216
P GS GS GE GE + + P + G ++ G+ P G
Sbjct: 1251 QGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Query: 217 PATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLS 276
P D+G + VG G PG LG D + G
Sbjct: 1311 PG----DDGPKG--NPGPVGFPGDPG----------PPGELGPAGQDGVGGD-------- 1346
Query: 277 DPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEP 311
+GE PG GP G P E P PP P
Sbjct: 1347 ----KGEDGDPGQPGPPG-PSGEAGPPGPPGKRGP 1376
Score = 37.1 bits (84), Expect = 0.47
Identities = 67/250 (26%), Positives = 88/250 (34%), Gaps = 41/250 (16%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + G D PPG P G+R + GP+ + G P PP GL
Sbjct: 913 GPKGTSGGDGPPGPP--------GERGPQ---GPQGPVGFPGPKGPPGPP--GKDGLPGH 959
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP-TPGALRRRRKVPPSGSGGSEFSN 171
R + +T GPG +V P+ P G + R P G G +
Sbjct: 960 PGQRGETGFQGKTGPPGPG--------GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 1011
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
G AG+ + DP PQ + + P G L + GLP GL G
Sbjct: 1012 GAAGKE-GAKGDPGPQ--GISGKDGPAG-------LRGFPGERGLPGAQGA-PGLKGGEG 1060
Query: 232 DWS----VGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGK--APKKKSLSDPSRRGELA 285
VGS +G I PG G AG+ AP +K P+ R +
Sbjct: 1061 PQGPPGPVGSPGERGSAGTAGPIGL-PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1119
Query: 286 GP-GFEGPGG 294
GP G GP G
Sbjct: 1120 GPVGLPGPAG 1129
>gb|AAF04725.1| (AF101112) collagen type XI alpha-1 isoform A [Homo sapiens]
Length = 1806
Score = 49.6 bits (116), Expect = 8e-05
Identities = 92/396 (23%), Positives = 135/396 (33%), Gaps = 72/396 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTR-GQRSQEELSGPESSLTDEGIGA---------DPEPP 102
G Q +G+D P G P G V G++ + +G + G+G + PP
Sbjct: 1228 GPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1287
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTN--------------HHGPGTEDSLGG--WALVSPET 146
AA G G P + N GP +D +GG P
Sbjct: 1288 GAA----GPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGPAGQDGVGGDKGEDGDPGQ 1343
Query: 147 PPTPGALRRRR------KVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF 200
P PG K P G+ G+E GE G + ++ P + + P G
Sbjct: 1344 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 201 SVDSNLLGSLSP--KTGLPATSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSI 250
L G P + GLP + D GL D GS+ KG+
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD--PGSKGEKGH------- 1454
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSE 310
PG +G + G ++ D G PG +G GG P P+ PP
Sbjct: 1455 ---PGLIGLI------GPPGEQGEKGDRGLPGTQGSPGAKGDGGIP-GPAGPLGPPGP-- 1502
Query: 311 PILVEQRAEPEEPGATRSRAQS-ERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGS 369
P L + G+T Q + LP PP P ILS + RR +
Sbjct: 1503 PGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLP----ILSSKKTRRHT 1558
Query: 370 KKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
+ A + L +G ++ GSL+ + H++
Sbjct: 1559 EGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMK 1594
Score = 37.9 bits (86), Expect = 0.27
Identities = 69/275 (25%), Positives = 89/275 (32%), Gaps = 64/275 (23%)
Query: 53 GAQQDDGSDAPPGSPDW----------AGDVTRGQRSQEELSGPESSLTDEGIGADPEPP 102
G++ D G + PPG P GD G R Q+ + G + DEG P PP
Sbjct: 1138 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG---DEGARGFPGPP 1194
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP----GALRRRRK 158
+G G+ P PG + G + P PP P G
Sbjct: 1195 GP----IGLQGLPGP------------PGEKGENGDVGPMGPPGPPGPRGPQGPNGADGP 1238
Query: 159 VPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSP--KTGL 216
P GS GS GE GE + + P + G ++ G+ P G
Sbjct: 1239 QGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Query: 217 PATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLS 276
P D+G + VG G PG LG D + G
Sbjct: 1299 PG----DDGPKG--NPGPVGFPGDPG----------PPGELGPAGQDGVGGD-------- 1334
Query: 277 DPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEP 311
+GE PG GP G P E P PP P
Sbjct: 1335 ----KGEDGDPGQPGPPG-PSGEAGPPGPPGKRGP 1364
Score = 37.1 bits (84), Expect = 0.47
Identities = 67/250 (26%), Positives = 88/250 (34%), Gaps = 41/250 (16%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + G D PPG P G+R + GP+ + G P PP GL
Sbjct: 901 GPKGTSGGDGPPGPP--------GERGPQ---GPQGPVGFPGPKGPPGPP--GKDGLPGH 947
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP-TPGALRRRRKVPPSGSGGSEFSN 171
R + +T GPG +V P+ P G + R P G G +
Sbjct: 948 PGQRGETGFQGKTGPPGPG--------GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 999
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
G AG+ + DP PQ + + P G L + GLP GL G
Sbjct: 1000 GAAGKE-GAKGDPGPQ--GISGKDGPAG-------LRGFPGERGLPGAQGA-PGLKGGEG 1048
Query: 232 DWS----VGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGK--APKKKSLSDPSRRGELA 285
VGS +G I PG G AG+ AP +K P+ R +
Sbjct: 1049 PQGPPGPVGSPGERGSAGTAGPIGL-PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1107
Query: 286 GP-GFEGPGG 294
GP G GP G
Sbjct: 1108 GPVGLPGPAG 1117
>gb|AAF04724.1| (AF101112) collagen type XI alpha-1 [Homo sapiens]
Length = 1767
Score = 49.6 bits (116), Expect = 8e-05
Identities = 92/396 (23%), Positives = 135/396 (33%), Gaps = 72/396 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTR-GQRSQEELSGPESSLTDEGIGA---------DPEPP 102
G Q +G+D P G P G V G++ + +G + G+G + PP
Sbjct: 1189 GPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1248
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTN--------------HHGPGTEDSLGG--WALVSPET 146
AA G G P + N GP +D +GG P
Sbjct: 1249 GAA----GPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGPAGQDGVGGDKGEDGDPGQ 1304
Query: 147 PPTPGALRRRR------KVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF 200
P PG K P G+ G+E GE G + ++ P + + P G
Sbjct: 1305 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 201 SVDSNLLGSLSP--KTGLPATSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSI 250
L G P + GLP + D GL D GS+ KG+
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD--PGSKGEKGH------- 1415
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSE 310
PG +G + G ++ D G PG +G GG P P+ PP
Sbjct: 1416 ---PGLIGLI------GPPGEQGEKGDRGLPGTQGSPGAKGDGGIP-GPAGPLGPPGP-- 1463
Query: 311 PILVEQRAEPEEPGATRSRAQS-ERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGS 369
P L + G+T Q + LP PP P ILS + RR +
Sbjct: 1464 PGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLP----ILSSKKTRRHT 1519
Query: 370 KKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
+ A + L +G ++ GSL+ + H++
Sbjct: 1520 EGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMK 1555
Score = 37.9 bits (86), Expect = 0.27
Identities = 69/275 (25%), Positives = 89/275 (32%), Gaps = 64/275 (23%)
Query: 53 GAQQDDGSDAPPGSPDW----------AGDVTRGQRSQEELSGPESSLTDEGIGADPEPP 102
G++ D G + PPG P GD G R Q+ + G + DEG P PP
Sbjct: 1099 GSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG---DEGARGFPGPP 1155
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP----GALRRRRK 158
+G G+ P PG + G + P PP P G
Sbjct: 1156 GP----IGLQGLPGP------------PGEKGENGDVGPMGPPGPPGPRGPQGPNGADGP 1199
Query: 159 VPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSP--KTGL 216
P GS GS GE GE + + P + G ++ G+ P G
Sbjct: 1200 QGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Query: 217 PATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLS 276
P D+G + VG G PG LG D + G
Sbjct: 1260 PG----DDGPKG--NPGPVGFPGDPG----------PPGELGPAGQDGVGGD-------- 1295
Query: 277 DPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEP 311
+GE PG GP G P E P PP P
Sbjct: 1296 ----KGEDGDPGQPGPPG-PSGEAGPPGPPGKRGP 1325
Score = 37.1 bits (84), Expect = 0.47
Identities = 67/250 (26%), Positives = 88/250 (34%), Gaps = 41/250 (16%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + G D PPG P G+R + GP+ + G P PP GL
Sbjct: 862 GPKGTSGGDGPPGPP--------GERGPQ---GPQGPVGFPGPKGPPGPP--GKDGLPGH 908
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP-TPGALRRRRKVPPSGSGGSEFSN 171
R + +T GPG +V P+ P G + R P G G +
Sbjct: 909 PGQRGETGFQGKTGPPGPG--------GVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 960
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
G AG+ + DP PQ + + P G L + GLP GL G
Sbjct: 961 GAAGKE-GAKGDPGPQ--GISGKDGPAG-------LRGFPGERGLPGAQGA-PGLKGGEG 1009
Query: 232 DWS----VGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGK--APKKKSLSDPSRRGELA 285
VGS +G I PG G AG+ AP +K P+ R +
Sbjct: 1010 PQGPPGPVGSPGERGSAGTAGPIGL-PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1068
Query: 286 GP-GFEGPGG 294
GP G GP G
Sbjct: 1069 GPVGLPGPAG 1078
>ref|NP_001845.1| collagen, type XI, alpha 1; Collagen XI, alpha-1 polypeptide [Homo
sapiens]
sp|P12107|CA1B_HUMAN COLLAGEN ALPHA 1(XI) CHAIN PRECURSOR
pir||CGHU1E collagen alpha 1(XI) chain precursor - human
gb|AAA51891.1| (J04177) alpha-1 (type XI) collagen precursor [Homo sapiens]
Length = 1806
Score = 49.6 bits (116), Expect = 8e-05
Identities = 92/396 (23%), Positives = 135/396 (33%), Gaps = 72/396 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTR-GQRSQEELSGPESSLTDEGIGA---------DPEPP 102
G Q +G+D P G P G V G++ + +G + G+G + PP
Sbjct: 1228 GPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1287
Query: 103 VAAFCGLGTTGMWRPLSSSSAQTN--------------HHGPGTEDSLGG--WALVSPET 146
AA G G P + N GP +D +GG P
Sbjct: 1288 GAA----GPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGELGPAGQDGVGGDKGEDGDPGQ 1343
Query: 147 PPTPGALRRRR------KVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGF 200
P PG K P G+ G+E GE G + ++ P + + P G
Sbjct: 1344 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 201 SVDSNLLGSLSP--KTGLPATSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSI 250
L G P + GLP + D GL D GS+ KG+
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD--PGSKGEKGH------- 1454
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSE 310
PG +G + G ++ D G PG +G GG P P+ PP
Sbjct: 1455 ---PGLIGLI------GPPGEQGEKGDRGLPGTQGSPGAKGDGGIP-GPAGPLGPPGP-- 1502
Query: 311 PILVEQRAEPEEPGATRSRAQS-ERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGS 369
P L + G+T Q + LP PP P ILS + RR +
Sbjct: 1503 PGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLP----ILSSKKTRRHT 1558
Query: 370 KKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
+ A + L +G ++ GSL+ + H++
Sbjct: 1559 EGMQADADDNILDYSDGMEEIFGSLNSLKQDIEHMK 1594
Score = 39.1 bits (89), Expect = 0.12
Identities = 76/301 (25%), Positives = 105/301 (34%), Gaps = 48/301 (15%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + G D PPG P G+R + GP+ + G P PP C G
Sbjct: 901 GPKGTSGGDGPPGPP--------GERGPQ---GPQGPVGFPGPKGPPGPPGRMGCP-GHP 948
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP-TPGALRRRRKVPPSGSGGSEFSN 171
G R + +T GPG +V P+ P G + R P G G +
Sbjct: 949 GQ-RGETGFQGKTGPPGPG--------GVVGPQGPTGETGPIGERGYPGPPGPPGEQGLP 999
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
G AG+ + DP PQ + + P G L + GLP GL G
Sbjct: 1000 GAAGKE-GAKGDPGPQ--GISGKDGPAG-------LRGFPGERGLPGAQGA-PGLKGGEG 1048
Query: 232 DWS----VGSEESKGYQEVIQSIVQGP-GTLGRVVDDRIAGKAPKKKSLSDPSRRGELAG 286
VGS +G + GP G GR G A +K + + +G
Sbjct: 1049 PQGPPGPVGSPGERG-----SAGTAGPIGLRGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1103
Query: 287 PGFEGPGGEPIREVEPMLPPSS-SEPILVEQRAEPEEPGATRSRAQSERALPEALPPPAT 345
G +GP G P P P S E + EP + G+ + ++ P L P
Sbjct: 1104 DGVQGPVGLP----GPAGPAGSPGEDGDKGEIGEPGQKGSKGGKGENGPPGPPGLQGPVG 1159
Query: 346 A 346
A
Sbjct: 1160 A 1160
>ref|NP_031764.1| procollagen, type VII, alpha 1 [Mus musculus]
gb|AAB66593.1| (U32107) type VII collagen [Mus musculus]
Length = 2944
Score = 49.2 bits (115), Expect = 1e-04
Identities = 70/280 (25%), Positives = 96/280 (34%), Gaps = 40/280 (14%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGL-GTTGMWRP 117
G D PG P G G + L GP + G DP PP A GL G G P
Sbjct: 2138 GHDGNPGLPGERG--VAGPEGKPGLQGPRGTPGPVGSHGDPGPPGAP--GLAGPAGPQGP 2193
Query: 118 --LSSSSAQTNHHGPGTEDSLGGWALVSPE----------TPPTPGALRRRRKVPPSGSG 165
L +T G G +G L P +P PG + K P G
Sbjct: 2194 SGLKGEPGETGPPGRGLPGPVGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGPPGRD 2253
Query: 166 GSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEG 225
GS +G+ G S +P P G + +G+ P + ++G
Sbjct: 2254 GSSGKDGDRGSPGVPGSPGLPG---------PVGPKGEPGPVGAPGQVVVGPPGAKGEKG 2304
Query: 226 LTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELA 285
+ +G +KG + + PG G G+A + DP G+
Sbjct: 2305 APGDLAGALLGEPGAKGDRGL-------PGPRGE------KGEAGRAGGPGDPGEDGQKG 2351
Query: 286 GPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGA 325
PG +G GEP V+ P S P + P PGA
Sbjct: 2352 APGLKGLKGEPGIGVQGP-PGPSGPPGMKGDLGPPGAPGA 2390
Score = 39.1 bits (89), Expect = 0.12
Identities = 82/323 (25%), Positives = 105/323 (32%), Gaps = 74/323 (22%)
Query: 55 QQDDGSDAPPGSPDWAGDVTR----GQRSQEELSGPESSLTDEGIGADPEPPVAAFCGL- 109
Q D G PGSP G R G++ E GP G+ P PP GL
Sbjct: 1418 QGDPGLPGLPGSPGPQGPAGRPGEKGEKGDCEDGGP-------GLPGQPGPPGEP--GLR 1468
Query: 110 GTTGMWRPLSSSS-----------AQTNHHGPGTEDSLGGWA----LVSPETPPTPGALR 154
G GM P + H GP L G A + PE PP P R
Sbjct: 1469 GAPGMTGPKGDRGLTGTPGEPGVKGERGHPGPVGPQGLPGAAGHPGVEGPEGPPGPTGRR 1528
Query: 155 RRRKVP---------PSGSG--------------GSEFSNGEAGEAYRSL-SDPIPQRHR 190
+ P P G+G G+ S GE G +L DP P+
Sbjct: 1529 GEKGEPGRPGDPAVGPGGAGAKGEKGEAGLPGPRGASGSKGEQGAPGLALPGDPGPKGDP 1588
Query: 191 AATSEEPTGFSVDSNLLGSLSP--KTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQ 248
P G + + G P + G P + D G + +G
Sbjct: 1589 G--DRGPIGLTGRAGPTGDSGPPGEKGEPGRPGSPGPVGPRGRDGEAGEKGDEG------ 1640
Query: 249 SIVQGPGTLGRVVDDRIAGKAP-------KKKSLSDPSRRGELAGPGFEGPGGEPIREVE 301
I PG G+ + + G AP +K DP G PG GP G+ E
Sbjct: 1641 -IPGEPGLPGKAGERGLRG-APGPRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDR-GEPG 1697
Query: 302 PMLPPSSSEPILVEQRAEPEEPG 324
P PP +E R + EPG
Sbjct: 1698 PPGPPGRLVDAGIESR-DKGEPG 1719
Score = 38.7 bits (88), Expect = 0.16
Identities = 62/245 (25%), Positives = 84/245 (33%), Gaps = 28/245 (11%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGI-GADPEPPVAAFCGLGT 111
G +DG PG G+ G + SGP D G GA P V F G
Sbjct: 2342 GDPGEDGQKGAPGLKGLKGEPGIGVQGPPGPSGPPGMKGDLGPPGAPGAPGVVGFPGQ-- 2399
Query: 112 TGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSN 171
+ +T GP E L G P PG L +G+ G+
Sbjct: 2400 -------TGPRGETGQPGPVGERGLAG----PPGREGAPGPLGPPGPPGSAGAPGASGLK 2448
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 231
G+ G+ L P +R EP G + G P+ + + E G +
Sbjct: 2449 GDKGDPGAGLPGPRGERG------EP-GVRGEDGHPGQEGPRGLVGPPGSRGEQGEKGAA 2501
Query: 232 DWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEG 291
+ G + KG VI+ PG G D G+ + D RGE PG +G
Sbjct: 2502 G-AAGLKGDKGDSAVIEG---PPGPRGAKGD---MGERGPRGIDGDKGPRGESGNPGDKG 2554
Query: 292 PGGEP 296
GEP
Sbjct: 2555 SKGEP 2559
Score = 38.3 bits (87), Expect = 0.21
Identities = 91/387 (23%), Positives = 117/387 (29%), Gaps = 93/387 (24%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G Q D G D GSP +G +G R + GP L D GI + + G
Sbjct: 1670 GDQGDPGEDGRNGSPGSSGP--KGDRGEPGPPGPPGRLVDAGIESRDK---------GEP 1718
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNG 172
G P + PG G L P P +R G G + G
Sbjct: 1719 GQEGPRGPKG---DPGPPGVSGERGIDGLRGPPGPQGDPGVR--------GPAGDKGDRG 1767
Query: 173 EAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSD 232
G RS D P + P G L S K G P + GL H
Sbjct: 1768 PPGLDGRSGLDGKPG------APGPPG-------LHGASGKAGDPGRDGLP-GLRGEH-- 1811
Query: 233 WSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSR------RGELAG 286
G G PG G+ DD G K DP +G+
Sbjct: 1812 ---GPPGPPG----------PPGVPGKAGDDGKPGLNGKNGDPGDPGEDGRKGEKGDSGA 1858
Query: 287 PGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATA 346
PG EGP G +R P PG Q LP + PP
Sbjct: 1859 PGREGPDGPK------------------GERGAPGNPG-----LQGPPGLPGQVGPPGQG 1895
Query: 347 HRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRH 406
P + I P +G + Q L + G + GSL A R +
Sbjct: 1896 F------PGVPGITGP----KGDRGETGSKGEQGLPGERGLAGEPGSLPNA---ERLLET 1942
Query: 407 ASVPATFMPIVVPEPPTSVGPPVAVPE 433
A + + + +V S G + VPE
Sbjct: 1943 AGIKVSALREIVDTWDESSGSFLPVPE 1969
>gb|AAD09141.1| (U67056) myosin I heavy chain kinase [Acanthamoeba castellanii]
gb|AAD11799.1| (AF104910) myosin I heavy chain kinase [Acanthamoeba castellanii]
Length = 753
Score = 48.8 bits (114), Expect = 1e-04
Identities = 70/257 (27%), Positives = 88/257 (34%), Gaps = 54/257 (21%)
Query: 270 PKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGAT--- 326
P + P RRG A PG PG R + P + + P R P PGA
Sbjct: 243 PPMRGRGGPMRRG--APPGRPSPG----RTLPPPPGGAPAGPGPTTGRGLPPRPGAPNGA 296
Query: 327 -----RSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQEL 381
R A + LP PP P+ PR + + RP + Q +
Sbjct: 297 PMPLQRGGASGDAPLPLTRGPPGGGA------PRGPGAPPPRP-GQPAPMRPGQPGGQGV 349
Query: 382 RRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRA 441
Q G RP+ R + P MP VP PT+ P VP P P
Sbjct: 350 PPPRPGQPAPG-----RPTMRPSQPGGPPRPPMPAPVPTTPTAAVTPAPVPVPAPAP--- 401
Query: 442 HPTLQAPSLEDVTKQYMLNLHSGEVPAPVPV----DMPCLPLAAPPSAEAKPPEAARPAD 497
AP+ D T + P P P P P PP A PP PA
Sbjct: 402 -----APAPADTTP-------AAGPPRPTPPIATGARPAPPRPQPPKAGGAPP----PAA 445
Query: 498 EPTPASKCCSKPQVDMR 514
P PA +PQV++R
Sbjct: 446 APQPA-----RPQVNIR 457
>ref|NP_045322.1| very large virion protein (tegument) [Bovine herpesvirus type 1.1]
emb|CAB01605.1| (Z78205) UL36 [Bovine herpesvirus 1]
emb|CAA06097.1| (AJ004801) very large virion protein (tegument) [Bovine herpesvirus
type 1.1]
Length = 3247
Score = 48.8 bits (114), Expect = 1e-04
Identities = 63/236 (26%), Positives = 87/236 (36%), Gaps = 23/236 (9%)
Query: 292 PGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPP-PATAHRNF 350
P P R P P + P E+ A P P ER P P PATA ++
Sbjct: 2835 PPPAPERPAPPPAPERPAPPPAPERPAPPPAPERPAPPPAPERPAPPPAPERPATAVQSG 2894
Query: 351 HLDPKLADIL----SPRLIRRGSKKR-----PARSSHQE--LRRDEGSQDQT--GSLSRA 397
P ++ L +P L+RRG R PAR + R++ + D T GS S
Sbjct: 2895 SKIPAPSNALVGQVAPALLRRGPSPRGKPGAPARPTGGANIARKNTRAVDPTVIGSGSAL 2954
Query: 398 RPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQY 457
A A+ M + P P P A P P P P L+AP+ +
Sbjct: 2955 SGLGSAEEDADFGASGMYVAPPGP----APLAAPPAPSALPA---PRLEAPAAASLPAPP 3007
Query: 458 MLNLHSGEVPAPV--PVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQV 511
+ + + P+ P+ P P APP A P A PA+ S P +
Sbjct: 3008 IAPPIAPPIAPPIAPPIAPPIAPPIAPPIAPPIAPPAMPAPPSAAPATAGSSAPPI 3063
Score = 47.3 bits (110), Expect = 4e-04
Identities = 56/203 (27%), Positives = 72/203 (34%), Gaps = 21/203 (10%)
Query: 302 PMLPPSSSEPILVEQRAE--PEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADI 359
P L P+S+EP L E +E G A + A P A A H K A +
Sbjct: 2506 PALAPASAEPALAWGADEWLDDEIGDAYPPAPAHDAYPPAPAHDAYPPAPAHAQGKPALL 2565
Query: 360 LSPRLIRRGSKKRPARSSHQELRRDEGSQ-DQTGSLSRARPSSRHVRHASVPATFMPIVV 418
+P G+ + P + L R G + +L RP + A+ P P +
Sbjct: 2566 AAPAA---GAAEAPGVERARRLTRRTGPRKSMPAALPWRRPPPASLVSAAPPVPPGPRLP 2622
Query: 419 PEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLP 478
P PP PP A P P P P P + +P P P P P
Sbjct: 2623 PAPPL---PPPAPPLPPPAPPLPPPAPPLPP------------PAPPLPPPAPPLPPPAP 2667
Query: 479 LAAPPSAEAKPPEAARPADEPTP 501
AP A PP A PA P P
Sbjct: 2668 STAPVPAPPLPPPALTPALTPAP 2690
Score = 38.7 bits (88), Expect = 0.16
Identities = 40/114 (35%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 393 SLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLED 452
SL A+P R +R S P VP P + + PP + +G P P+ + PSLE
Sbjct: 2764 SLPAAQPRQRLLRSRS------PASVPAPGSELVPPPS-GGALGSPPSFVPS-RPPSLEP 2815
Query: 453 VTKQYMLNLHSGEVPAPV----PVDMPCLPLAAP-PSAEAKPPEAARPADEPTP 501
V L L V APV P P P P P A PP RPA P P
Sbjct: 2816 VPG---LPLPPSRVQAPVDAPAPPPAPERPAPPPAPERPAPPPAPERPAPPPAP 2866
>gb|AAA49678.1| (M63595) alpha-1 type II collagen [Xenopus laevis]
Length = 1486
Score = 48.8 bits (114), Expect = 1e-04
Identities = 68/258 (26%), Positives = 85/258 (32%), Gaps = 44/258 (17%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLG 110
GA D G + PPG +AG G Q L G + +G P P P A G
Sbjct: 821 GAPGDRGENGPPGPAGFAGPP--GADGQSGLKGDQGESGQKGDAGAPGPQGPSGAPGPQG 878
Query: 111 TTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS 170
TG++ P + AQ G + G P P P P GS G E
Sbjct: 879 PTGVFGPKGARGAQGPAGATGFPGAAGRVGTPGPNGNPGPPG--------PPGSAGKEGP 930
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
G G+A P G + D L G+ G P
Sbjct: 931 KGVRGDA------------------GPPGRAGDPGLQGA----AGAPGEKGEPGEDGPSG 968
Query: 231 SDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKA--PKKK----SLSDPSRRGEL 284
D G + G + IV PG G + G + P K+ S D G +
Sbjct: 969 PDGPPGPQGLSGQR----GIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPGPV 1024
Query: 285 AGPGFEGPGGEPIREVEP 302
PG GP GEP RE P
Sbjct: 1025 GPPGLTGPSGEPGREGNP 1042
Score = 45.7 bits (106), Expect = 0.001
Identities = 81/286 (28%), Positives = 101/286 (34%), Gaps = 43/286 (15%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ GA +DG PPG P A RGQ GP+ GA+ EP A
Sbjct: 576 KVGPSGASGEDGRPGPPG-PQGA----RGQPGVMGFPGPK--------GANGEPGKAGEK 622
Query: 108 GL-GTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPS-GSG 165
GL G G+ R L +T GP G + PP P + P S G G
Sbjct: 623 GLVGAPGL-RGLPGKDGETGSQGPNGPAGPAGER--GEQGPPGPSGFQGLPGPPGSPGEG 679
Query: 166 GSEFSNGEAGEA-YRSLSDPIPQRHRAATSEEPTGFSVDSNLLG--SLSPKTGLPATSAM 222
G G GEA L P +R GF + G L GLP T
Sbjct: 680 GKPGDQGVPGEAGAPGLVGPRGER----------GFPGERGSSGPQGLQGPRGLPGTPGT 729
Query: 223 DEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDR--IAGKAPKKKSLSDPSR 280
D + G++ G Q + +G + DR K P+ S D SR
Sbjct: 730 DGPKGASGPSGPNGAQGPPGLQGMPGE--RGAAGISGPKGDRGDTGEKGPEGASGKDGSR 787
Query: 281 --RGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G + PG GP GE E P PP +V R P + G
Sbjct: 788 GLTGPIGPPGPAGPNGEK-GESGPSGPPG-----IVGARGAPGDRG 827
Score = 36.4 bits (82), Expect = 0.80
Identities = 73/293 (24%), Positives = 100/293 (33%), Gaps = 42/293 (14%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGT 111
G + + GS P G+P AG+ RG R + +GP + G + P G
Sbjct: 470 GPKGEIGSAGPQGAPGPAGEEGKRGARGEPGAAGPNGPPGERGAPGNRGFP-------GQ 522
Query: 112 TGMWRPLSSSSAQTNHHGPGTEDSLGGWALVS-PETPPTPGALRRRRKVPPSGSGGSEFS 170
G+ P A PG GG P P PGA + +G G
Sbjct: 523 DGLAGP---KGAPGERGVPGLGGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 579
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPK--TGLPATSAMDEGLTS 228
+G +GE R P PQ R ++G PK G P A ++GL
Sbjct: 580 SGASGEDGRP-GPPGPQGARG-----------QPGVMGFPGPKGANGEPG-KAGEKGL-- 624
Query: 229 GHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPG 288
VG+ +G + G G + AG A ++ P G PG
Sbjct: 625 ------VGAPGLRG-------LPGKDGETGSQGPNGPAGPAGERGEQGPPGPSGFQGLPG 671
Query: 289 FEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALP 341
G GE + + +P + P LV R E PG S P LP
Sbjct: 672 PPGSPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSSGPQGLQGPRGLP 724
Score = 34.8 bits (78), Expect = 2.4
Identities = 88/386 (22%), Positives = 117/386 (29%), Gaps = 70/386 (18%)
Query: 51 RMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGI--------------- 95
R+G +G+ PPG P AG G + +GP D G+
Sbjct: 906 RVGTPGPNGNPGPPGPPGSAG--KEGPKGVRGDAGPPGRAGDPGLQGAAGAPGEKGEPGE 963
Query: 96 ----GADPEPPVAAFCG----------LGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWAL 141
G D P G G G S GPG+ G
Sbjct: 964 DGPSGPDGPPGPQGLSGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPGP 1023
Query: 142 VSPETPPTPGALRRRRKVP----PSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEP 197
V P P R P P G G+ G+ GE + P A S P
Sbjct: 1024 VGPPGLTGPSGEPGREGNPGSDGPPGRDGATGIKGDRGETGPLGAPGAPGAPGAPGSVGP 1083
Query: 198 TGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSD-------WSVGSEESKGYQEV--IQ 248
TG D G P P+ A GL G KG++ +Q
Sbjct: 1084 TGKQGDRGESGPQGPLG--PSGPAGARGLAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQ 1141
Query: 249 SIVQGPGTLGRVVDDRIAGKA----------PKKKS--------LSDPSRRGELAGPGFE 290
+ PG+ G AG A P K + P RG G
Sbjct: 1142 GLPGPPGSAGDQGATGPAGPAGPRGPPGPVGPSGKDGSNGISGPIGPPGPRGRSGETGPS 1201
Query: 291 GPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNF 350
GP G+P P P + ++PE+ G R +LP A
Sbjct: 1202 GPPGQPGPPGPPGPPGPGIDMSAFAGLSQPEK-GPDPMRYMRADQASNSLPVDVEATLK- 1259
Query: 351 HLDPKLADILSPRLIRRGSKKRPARS 376
L+ ++ +I SP G+KK PAR+
Sbjct: 1260 SLNNQIENIRSP----DGTKKNPART 1281
>dbj|BAA92544.1| (AB037727) KIAA1306 protein [Homo sapiens]
Length = 1154
Score = 48.4 bits (113), Expect = 2e-04
Identities = 61/219 (27%), Positives = 81/219 (36%), Gaps = 51/219 (23%)
Query: 311 PILVEQRAEPEEP----------GATRSRAQSERALPEALPPPATAHRNFHLDPKLADI- 359
P E+ A PE P G R R SE+A P LPPP +P D+
Sbjct: 875 PKAKEREAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPP-----AEPPPTDLA 929
Query: 360 -LSPRLIRRGSKKRPARSS-------HQELRRDEGSQDQTGS-LSRARPSSRHVRHASVP 410
L P G ++PA+ Q + + +GS T + P S V+ A
Sbjct: 930 HLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGT 989
Query: 411 ATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPV 470
P V P+PP PP P+P+ +A L + S +G PAP
Sbjct: 990 P---PPVSPKPP----PPPTAPKPV----KAVAGLPSGS-------------AGPSPAPS 1025
Query: 471 PVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKP 509
P P LA PP P A PA P+P + P
Sbjct: 1026 PARQPPAALAKPPG--TPPSLGASPAKPPSPGAPALHVP 1062
Score = 41.0 bits (94), Expect = 0.031
Identities = 63/278 (22%), Positives = 101/278 (35%), Gaps = 54/278 (19%)
Query: 247 IQSIVQGPGTLGRVVDDRIAGKAPKKKSLS--DPSRRG---------ELAGPGFEGPGGE 295
+Q+ + GP +G + + P ++ + D S G EL G G GP
Sbjct: 384 LQAAMTGPAEVGPTTEKPSSHLPPTPRATTRQDSSLGGRARHMSSSQELLGDGPPGPSS- 442
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPK 355
P S S+ L+++ P P + ++ A PP L P
Sbjct: 443 ---------PMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPG 493
Query: 356 LADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMP 415
+ P+ +K RP S Q L G T ++ +P+ + + P + P
Sbjct: 494 TSHFTPPQT---PTKTRPG--SPQALGGPHGPAPAT---AKVKPTPQLLPPTERPMS--P 543
Query: 416 IVVPEPPTSVGPPVAVPEPI-GFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDM 474
+P+ PT G +P+P+ G A P G P PVP +
Sbjct: 544 RSLPQSPTHRGFAYVLPQPVEGEVGPAAP--------------------GPAPPPVPTAV 583
Query: 475 PCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQVD 512
P L L PP A+A+P + A + S+P+ D
Sbjct: 584 PTLCL--PPEADAEPGRPKKRAHSLNRYAASDSEPERD 619
>dbj|BAA20797.2| (AB002337) KIAA0339 protein [Homo sapiens]
Length = 1709
Score = 48.4 bits (113), Expect = 2e-04
Identities = 91/367 (24%), Positives = 132/367 (35%), Gaps = 38/367 (10%)
Query: 167 SEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGL 226
+E S+GE E SD + A S+ + DS S S + ++S+
Sbjct: 1003 TEVSDGEDEE-----SDSSSKCSLYADSDGENDSTSDSE--SSSSSSSSSSSSSSSSSSS 1055
Query: 227 TSGHSDWSVGSEESKGYQEVIQSI--------VQGPGTLGRVVDDRIAGK--APKKKSLS 276
+S S+ S EE + + S V P + V +R+AG P + +
Sbjct: 1056 SSSSSESSSEDEEEEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEA 1115
Query: 277 DPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEP---EEPGATRSRAQSE 333
P+R AGP E P P+R EP P + P E+ + P P R + S
Sbjct: 1116 SPARP---AGPTEESPPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTVSF 1172
Query: 334 RAL---PEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQ 390
A+ P PPPAT + P A +PR + R + P H L + +
Sbjct: 1173 SAIEVVPAPEPPPATPPQAKFPGP--ASRKAPRGVERTIRNLPL--DHASLVKSWPEEVS 1228
Query: 391 TGSLSRARPSSRHVRHASV-PATFMPIVV----PEPPTSVGPPV--AVPEPIGFPTRAHP 443
G SRA R P T + + V P G P AV + T
Sbjct: 1229 RGGRSRAGGRGRLTEEEEAEPGTEVDLAVLADLALTPARRGLPALPAVEDSEATETSDEA 1288
Query: 444 TLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPAS 503
P L + ++ L P P P P P+ AP + + P + A E A
Sbjct: 1289 ERPRPLLSHILLEHNYALAVKPTP-PAPALRPPEPVPAPAALFSSPADEVLEAPEVVVAE 1347
Query: 504 KCCSKPQ 510
KPQ
Sbjct: 1348 AEEPKPQ 1354
>gb|AAD55980.1|AF159297_1 (AF159297) extensin-like protein [Zea mays]
Length = 1315
Score = 48.4 bits (113), Expect = 2e-04
Identities = 59/239 (24%), Positives = 81/239 (33%), Gaps = 32/239 (13%)
Query: 269 APKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSS-SEPILVEQRAEPEEPGATR 327
+P +S P + + + P P P E +P PPSS S P + + P P ++
Sbjct: 840 SPPLAPVSSPPQVEKTSPP--PAPVSSPPLEPKPSSPPSSVSSPPTTVKSSPPPAPLSSP 897
Query: 328 SRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGS 387
+ P + P A ++ P LA I SP K P SS + +
Sbjct: 898 PMTPKSSSPPAHVSSPPEAEKS---SPPLAPISSPP----SEPKSP--SSPPMVEKTSPP 948
Query: 388 QDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQA 447
S SS S P + P P S PP P P P + P +
Sbjct: 949 PATVSSPPPTPKSSPPPAPVSSPPPVVKSSPPPAPVSSPPPTPKPLPPPAPVSSPPPVVK 1008
Query: 448 PSLEDVTKQYMLNLHSGEVPAPVPVDMPC---LPLAAPPSAEAKPPEAARPADEPTPAS 503
S P P PV P PL PP+ + PP +P P P S
Sbjct: 1009 SS-----------------PPPTPVSSPPPTPKPLPPPPTPVSSPPPTXKPLPPPAPVS 1050
Score = 45.7 bits (106), Expect = 0.001
Identities = 53/225 (23%), Positives = 78/225 (34%), Gaps = 15/225 (6%)
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRA---------QSERALPEALPPPATA 346
P VE + PPS S P + P+ P ++ A S +PE+ PPP
Sbjct: 715 PPSPVETLPPPSKSSPPEEPVSSPPQAPKSSSPPAPVSSPPPLKSSPPPVPESSPPPTPK 774
Query: 347 HRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRH 406
P LA + SP + + S SS + S + +S
Sbjct: 775 S-----SPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPLAPVSSPPQVEKTSPPPAP 829
Query: 407 ASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVT-KQYMLNLHSGE 465
S P P P S P V P P + P PS + + S
Sbjct: 830 VSSPPPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPLEPKPSSPPSSVSSPPTTVKSSP 889
Query: 466 VPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQ 510
PAP+ ++PP+ + PPEA + + P S S+P+
Sbjct: 890 PPAPLSSPPMTPKSSSPPAHVSSPPEAEKSSPPLAPISSPPSEPK 934
Score = 44.5 bits (103), Expect = 0.003
Identities = 56/235 (23%), Positives = 83/235 (34%), Gaps = 25/235 (10%)
Query: 269 APKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRS 328
+P +S P + + + P P + P L P SS P VE+ + P P ++
Sbjct: 808 SPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPLAPVSSPP-QVEKTSPPPAPVSSPP 866
Query: 329 RAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQ 388
+ P ++ P T ++ P A + SP + + S SS E +
Sbjct: 867 LEPKPSSPPSSVSSPPTTVKS---SPPPAPLSSPPMTPKSSSPPAHVSSPPEAEK----- 918
Query: 389 DQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAP 448
S P S P++ P+V P PP V P P + P
Sbjct: 919 ----SSPPLAPISSPPSEPKSPSS-PPMVEKTSP----PPATVSSPPPTPKSSPPPAPVS 969
Query: 449 SLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPAS 503
S V K S PAPV P PP+ + PP + + PTP S
Sbjct: 970 SPPPVVK-------SSPPPAPVSSPPPTPKPLPPPAPVSSPPPVVKSSPPPTPVS 1017
Score = 43.4 bits (100), Expect = 0.006
Identities = 63/281 (22%), Positives = 94/281 (33%), Gaps = 54/281 (19%)
Query: 269 APKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRS 328
+P ++ +S P + + + P P++ P +P SS P + + P P S
Sbjct: 729 SPPEEPVSSPPQAPKSSSPPAPVSSPPPLKSSPPPVPESSPPP--TPKSSPPLAP--VSS 784
Query: 329 RAQSERALPEALP---PPATAHRNFHLDPKLADILSPRLIRRGSKK-------------- 371
Q E+ P P PP T + P LA + SP + + S
Sbjct: 785 PPQVEKTSPPPAPVSSPPPTPKSS----PPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSS 840
Query: 372 ---RPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEP------- 421
P S Q + + +PSS +S P T P P
Sbjct: 841 PPLAPVSSPPQVEKTSPPPAPVSSPPLEPKPSSPPSSVSSPPTTVKSSPPPAPLSSPPMT 900
Query: 422 PTSVGPPVAV---PE---------PIGFPTRAHPTLQAPSLEDVTKQYMLNLHS------ 463
P S PP V PE PI P + +P + + T + S
Sbjct: 901 PKSSSPPAHVSSPPEAEKSSPPLAPISSPPSEPKSPSSPPMVEKTSPPPATVSSPPPTPK 960
Query: 464 -GEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPAS 503
PAPV P + + PP+ + PP +P P P S
Sbjct: 961 SSPPPAPVSSPPPVVKSSPPPAPVSSPPPTPKPLPPPAPVS 1001
Score = 43.4 bits (100), Expect = 0.006
Identities = 58/248 (23%), Positives = 78/248 (31%), Gaps = 38/248 (15%)
Query: 292 PGGEPIREVEPMLPPS--SSEPILVEQRAEP---------EEPGATRSRAQSERAL---- 336
P P +P+ PP+ SS P +V+ P +P R+R S R +
Sbjct: 1032 PVSSPPPTXKPLPPPAPVSSPPPVVKSSPPPAPVSLPPPTRKPSPPRTRVSSPRPVVKCC 1091
Query: 337 ------------PEALPPPATAHR---NFHLDPKLADILSPRLIRRGSKKRPARSSHQEL 381
P++LPPP P + SP + S SS
Sbjct: 1092 PPPTLVSSPPPAPKSLPPPTPVSSPPPEVKSSPPPTPVSSPPPAPKSSPPPTPVSSPPPE 1151
Query: 382 RRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRA 441
+ S A SS S+P + P P S PP A P
Sbjct: 1152 LKSSPPPAPVSSPPSAPKSSPPPAPVSLPPPEVKSSPPPAPISSPPPPAKSPP------- 1204
Query: 442 HPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTP 501
P SL K P P+ P P+++PP A KPP PA +P
Sbjct: 1205 -PPAPMSSLPPPVKSPPPPAPVSSPPPPMKSPPPPAPISSPPPAPVKPPSLPPPAPVSSP 1263
Query: 502 ASKCCSKP 509
S P
Sbjct: 1264 PPAVTSAP 1271
Score = 43.0 bits (99), Expect = 0.008
Identities = 58/225 (25%), Positives = 76/225 (33%), Gaps = 32/225 (14%)
Query: 288 GFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAH 347
G+ PGG P V P +P P P S LPE P PA A
Sbjct: 410 GYPTPGGPPSSSVPGKPPSVPGKPAAPAPMPTPHTPPDV-----SPEPLPEPSPVPAPAP 464
Query: 348 RNFHLDPKLADILSPRLIRRGS--KKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
P L + I K P +S R Q Q + S P + V+
Sbjct: 465 MRM---PTLRSPPADEYIPTPPVPAKSPPGTSPPASRGAPPLQAQPPAASS--PPATPVK 519
Query: 406 HASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGE 465
+ PA +V+P P + PP V P P A + P ++ S
Sbjct: 520 SSPPPAA---VVLPPPAKTPSPPAPVASP---PPEAPVSSPQPQVK-----------SPP 562
Query: 466 VPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQ 510
PAPV P + PP+ A PP + P P + S PQ
Sbjct: 563 PPAPVASPPPPMKSPPPPARVASPPPLMK---SPPPPAPVASPPQ 604
Score = 42.6 bits (98), Expect = 0.011
Identities = 60/247 (24%), Positives = 82/247 (32%), Gaps = 38/247 (15%)
Query: 276 SDPSRRG----ELAGPGFEGPGGEPIREVEP----MLPPSSSEPILVEQRAEPEEPGATR 327
S P+ RG + P P P++ P +LPP + P A P P A
Sbjct: 493 SPPASRGAPPLQAQPPAASSPPATPVKSSPPPAAVVLPPPAKTPSPPAPVASPP-PEAPV 551
Query: 328 SRAQSERALPEALPPPATAHRNFHLDPKLADILSPR-LIRRGSKKRPARSSHQELRRDEG 386
S Q + P P A+ P A + SP L++ P S Q L+
Sbjct: 552 SSPQPQVKSPPPPAPVASPPPPMKSPPPPARVASPPPLMKSPPPPAPVASPPQPLK---- 607
Query: 387 SQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPE----PIGFPTRAH 442
L + PS + P +P+ P PP PP+A P+ P
Sbjct: 608 -SPPPPVLWLSTPSVKS------PPPPVPVASPPPPVKSPPPLAPVSSPSPPVKLPPLPA 660
Query: 443 PTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPA 502
P P E+ P PV P PP+ PP P ++PTP
Sbjct: 661 PGKSTPPPEE---------EKPTPPTPVKSSPPPEKSLPPPTLTTSPP----PQEKPTPP 707
Query: 503 SKCCSKP 509
S P
Sbjct: 708 STPSKPP 714
Score = 37.9 bits (86), Expect = 0.27
Identities = 54/219 (24%), Positives = 73/219 (32%), Gaps = 30/219 (13%)
Query: 292 PGGEPIREVEPMLPPSS-SEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRN- 349
P P +P+ PP+ S P V + + P P S P+ LPPP T +
Sbjct: 983 PVSSPPPTPKPLPPPAPVSSPPPVVKSSPPPTP------VSSPPPTPKPLPPPPTPVSSP 1036
Query: 350 ---FHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRH 406
P A + SP + + S S R+ S R R SS
Sbjct: 1037 PPTXKPLPPPAPVSSPPPVVKSSPPPAPVSLPPPTRKP--------SPPRTRVSSPRPVV 1088
Query: 407 ASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEV 466
P + P P S+ PP V P + P S K
Sbjct: 1089 KCCPPPTLVSSPPPAPKSLPPPTPVSSPPPEVKSSPPPTPVSSPPPAPKSS--------- 1139
Query: 467 PAPVPVDMPC--LPLAAPPSAEAKPPEAARPADEPTPAS 503
P P PV P L + PP+ + PP A + + P P S
Sbjct: 1140 PPPTPVSSPPPELKSSPPPAPVSSPPSAPKSSPPPAPVS 1178
>gb|AAD49970.1|AC008075_3 (AC008075) F24J5.4 [Arabidopsis thaliana]
gb|AAF15072.1|AC011914_14 (AC011914) hypothetical protein; 88190-87522 [Arabidopsis thaliana]
Length = 222
Score = 48.4 bits (113), Expect = 2e-04
Identities = 49/202 (24%), Positives = 71/202 (34%), Gaps = 14/202 (6%)
Query: 290 EGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRN 349
+GP P+ PP+++ P A P T + ++ PPPA +
Sbjct: 25 QGPAASPVTSTTTAPPPTTAAP---PTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTS 81
Query: 350 FHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASV 409
PK+A ++SP + P S+ + S + P+S AS
Sbjct: 82 PPA-PKVAPVISPATPPPQPPQSPPASA-PTVSPPPVSPPPAPTSPPPTPASPPPAPASP 139
Query: 410 PATFMPIVVPEPPTSVGPP-VAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPA 468
P P PP V PP V P PI P P + K++ H PA
Sbjct: 140 P----PAPASPPPAPVSPPPVQAPSPISLPPAPAPAPTKHKRKHKHKRH----HHAPAPA 191
Query: 469 PVPVDMPCLPLAAPPSAEAKPP 490
P+P P P+ P A P
Sbjct: 192 PIPPSPPSPPVLTDPQDTAPAP 213
Score = 39.1 bits (89), Expect = 0.12
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 21/96 (21%)
Query: 410 PATFMPIVVPEPPTS------VGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHS 463
P T P V P P + + P P+P P + PT+ P +
Sbjct: 70 PVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVS------------ 117
Query: 464 GEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEP 499
P P P P P + PP+ + PP A P P
Sbjct: 118 ---PPPAPTSPPPTPASPPPAPASPPPAPASPPPAP 150
Score = 38.3 bits (87), Expect = 0.21
Identities = 28/85 (32%), Positives = 32/85 (36%), Gaps = 6/85 (7%)
Query: 421 PPTSVGPPVAVPEPIGFPTRAHPTLQA--PSLEDVTKQYMLNLHSGEVPAPVPVDMPCLP 478
PPT+ PP P PT P + A P VT + S P PV P P
Sbjct: 40 PPTTAAPPTTAAPP---PTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATP 96
Query: 479 LAAPP-SAEAKPPEAARPADEPTPA 502
PP S A P + P P PA
Sbjct: 97 PPQPPQSPPASAPTVSPPPVSPPPA 121
Score = 38.3 bits (87), Expect = 0.21
Identities = 27/94 (28%), Positives = 37/94 (38%), Gaps = 7/94 (7%)
Query: 415 PIVVPEPPTSVGPPVAVPEPIGFPTRAHP--TLQAPSLEDVTKQYMLNLHSGEVPAPVPV 472
P PPT+ PPV+ +P P P T +P V + P P
Sbjct: 47 PTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPA 106
Query: 473 DMPCL---PLAAPPSAEAKPPEAARPADEPTPAS 503
P + P++ PP+ + PP A P P PAS
Sbjct: 107 SAPTVSPPPVSPPPAPTSPPPTPASP--PPAPAS 138
Score = 36.7 bits (83), Expect = 0.61
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 399 PSSRHVRHASVPATFMPIVVPEPPTS---VGPPVAVPEPIGFPTRAHPTLQAPSLEDVTK 455
P + V PAT P PP S V PP P P PT PT +P +
Sbjct: 82 PPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPA--PTSPPPTPASPPPAPAS- 138
Query: 456 QYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTP 501
P P P P P++ PP +A P + PA P P
Sbjct: 139 -----------PPPAPASPPPAPVSPPP-VQAPSPISLPPAPAPAP 172
>pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission yeast
(Schizosaccharomyces pombe)
gb|AAB92587.1| (AF038575) Wiskott-Aldrich Syndrome protein homolog
[Schizosaccharomyces pombe]
Length = 574
Score = 48.4 bits (113), Expect = 2e-04
Identities = 84/363 (23%), Positives = 118/363 (32%), Gaps = 44/363 (12%)
Query: 180 SLSDPIP--QRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGS 237
S + P+P + + A S+ P + LL SL P S +D + G S +
Sbjct: 160 SAAPPVPGKENYNAVGSKSPN----EPELLNSLDP-------SLIDSLMKMGISQDQIAE 208
Query: 238 EESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPI 297
+ +S T + I P ++ S + P G P
Sbjct: 209 NADFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSVSAPAPPPIPPPSNGTVSSPP 268
Query: 298 REVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLA 357
+ P S P + P P ++R A + A + PPP R P +
Sbjct: 269 NSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328
Query: 358 DILS----------PRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHA 407
+ S PR GS P + S TG SSR V +
Sbjct: 329 NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP 388
Query: 408 SVPATFMPIVVPEPPTSVGPPVA---------VPEPIGFPTRAHPTLQA---PSLEDVTK 455
P P +P PP+ VP P P A P+L PSL
Sbjct: 389 PAP----PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 456 QYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEP-TPASKCCSKPQVDMR 514
S + P+P MP P PP+A A PP PA P P + PQ D R
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPAPPP---APAPAPAAPVASIAELPQQDGR 500
Query: 515 KHV 517
++
Sbjct: 501 ANL 503
Score = 35.2 bits (79), Expect = 1.8
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 117 PLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS------ 170
P +S+++ P + S A PP P RR R PP G+G S S
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Query: 171 ---NGEAGE-----AYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSA 221
+ AG RS P P R +T +P S + +P +P SA
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
>ref|NP_038636.1| nascent polypeptide-associated complex alpha polypeptide [Mus
musculus]
pir||T30826 nascent polypeptide-associated complex alpha chain, muscle splice
form gp220 - mouse
gb|AAB18732.1| (U48363) alpha-NAC, muscle-specific form gp220 [Mus musculus]
gb|AAB18734.1| (U48364) alpha-NAC, muscle-specific form gp220 [Mus musculus]
Length = 2187
Score = 48.4 bits (113), Expect = 2e-04
Identities = 96/408 (23%), Positives = 142/408 (34%), Gaps = 63/408 (15%)
Query: 117 PLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGE 176
PL T+ D+L G AL SP P L P +
Sbjct: 938 PLLQHVPPTSPPKSPVSDTLSG-ALTSPPPKGPPATLAETPTYPKKSP--------KPAA 988
Query: 177 AYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVG 236
+ ++ + P P+ A E P +PKT P S+ +S + +
Sbjct: 989 SKKTPATPSPEGVTAVPLEIPP--------CSKKAPKTAAPKESSATS--SSKRAPKTAV 1038
Query: 237 SEE--SKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGG 294
S+E SKG V P + + + P +KS S P R + AGP PGG
Sbjct: 1039 SKEIPSKGVTAV-------PLEISLPLKETSKSATPGEKSASSPKRSPKTAGPKETPPGG 1091
Query: 295 EPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSER-ALPEALPPPATAHRNFHLD 353
E LPP + Q A P E A S+ +S + ++P+ PP +
Sbjct: 1092 VTAVPPEISLPPKET-----PQNATPNESLAASSQKRSPKTSVPKETPPGGVTAMPLEIP 1146
Query: 354 ------PKLA---DILSPR---LIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSS 401
PK A I +P I GS P ++S ++ + G ++ + S
Sbjct: 1147 SAPQKAPKTAVPKQIPTPEDAVTILAGSPLSPKKASKTAAPKEAPATPSVGVIAVSGEIS 1206
Query: 402 RHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNL 461
+ S A P+ ++ PP P+ T A A S E VT
Sbjct: 1207 PSPKKTSKTA------APKENSATLPPKRSPK-----TAAPKETPATSSEGVTAVPSEIS 1255
Query: 462 HSGEVPAPVPVDMPCLPLAAP------PSAEAKPPEAARPADEPTPAS 503
S PA V + P AP P++ K P+ A P + T S
Sbjct: 1256 PSPPTPASKGVPVTLTPKGAPNALAESPASPKKVPKTAAPEETSTTPS 1303
>pir||S49915 extensin-like protein - maize
emb|CAA84230.1| (Z34465) extensin-like protein [Zea mays]
prf||2111476A extensin-like domain [Zea mays]
Length = 1188
Score = 48.4 bits (113), Expect = 2e-04
Identities = 53/213 (24%), Positives = 75/213 (34%), Gaps = 14/213 (6%)
Query: 302 PMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHR---NFHLDPKLAD 358
PM P SS P++V + + S A P++ PPPA + P
Sbjct: 925 PMTPKSSPPPVVVSSPPPTVKSSPPPAPVSSPPATPKSSPPPAPVNLPPPEVKSSPPPTP 984
Query: 359 ILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVV 418
+ SP + S PA S + S P A V + P+
Sbjct: 985 VSSPPPAPKSSPP-PAPMSSPPPPEVKSPPPPAPVSSPPPPVKSPPPPAPVSSPPPPVKS 1043
Query: 419 PEPPTSVG---PPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMP 475
P PP V PPV P P + P +++P + S PAPV P
Sbjct: 1044 PPPPAPVSSPPPPVKSPPPPAPISSPPPPVKSPPPPAPVSSPPPPVKSPPPPAPVSSPPP 1103
Query: 476 CL-------PLAAPPSAEAKPPEAARPADEPTP 501
+ P+++PP A KPP PA +P
Sbjct: 1104 PIKSPPPPAPVSSPPPAPVKPPSLPPPAPVSSP 1136
Score = 44.5 bits (103), Expect = 0.003
Identities = 60/237 (25%), Positives = 80/237 (33%), Gaps = 32/237 (13%)
Query: 288 GFEGPGGEPIREVEPMLP------PSSSEPILVEQRAEPEE---------PGATRSRAQS 332
G+ PGG P P P PS P V PE P T +
Sbjct: 408 GYPTPGGGPPSSPVPGKPAASAPMPSPHTPPDVSPEPLPEPSPVPAPAPMPMPTPHSPPA 467
Query: 333 ERALPEALP-----PPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGS 387
+ +P P PPAT+ + P A P L++ + P S ++
Sbjct: 468 DDYVPPTPPVPGKSPPATSPSP-QVQPPAASTPPPSLVKLSPPQAPVGSPPPPVKTTSPP 526
Query: 388 QDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVG---PPVAVPEPIGFPTRAHPT 444
GS S P SV + P+ P PP VG PP P P P
Sbjct: 527 AP-IGSPSPPPP-------VSVVSPPPPVKSPPPPAPVGSPPPPEKSPPPPAPVASPPPP 578
Query: 445 LQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTP 501
+++P + + S PAPV P + PP+ A PP A A P P
Sbjct: 579 VKSPPPPTLVASPPPPVKSPPPPAPVASPPPPVKSPPPPTPVASPPPPAPVASSPPP 635
Score = 44.5 bits (103), Expect = 0.003
Identities = 90/390 (23%), Positives = 125/390 (31%), Gaps = 74/390 (18%)
Query: 128 HGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQ 187
H P +D + P TPP PG K PP+ S + A SL P
Sbjct: 463 HSPPADDYV-------PPTPPVPG------KSPPATSPSPQVQPPAASTPPPSLVKLSPP 509
Query: 188 RHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGS----EESKGY 243
+ + P + +GS SP + S + S VGS E+S
Sbjct: 510 QAPVGSPPPPVKTTSPPAPIGSPSPPPPVSVVSPPPP-VKSPPPPAPVGSPPPPEKSPPP 568
Query: 244 QEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPM 303
+ S P +A P KS P+ P P P+ P
Sbjct: 569 PAPVAS--PPPPVKSPPPPTLVASPPPPVKSPPPPAPVASPPPPVKSPPPPTPVASPPPP 626
Query: 304 LPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPR 363
P +SS P + P P S E++ P PPP
Sbjct: 627 APVASSPPPM----KSPPPPTPVSSPPPPEKSPP---PPP-------------------- 659
Query: 364 LIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPT 423
PA+S+ +E T S P S+P P ++P PP
Sbjct: 660 ---------PAKSTPPP---EEYPTPPTSVKSSPPPEK------SLPP---PTLIPSPPP 698
Query: 424 SVGP--PVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMP--CLPL 479
P P +P P + P + S T + P P PV P P+
Sbjct: 699 QEKPTPPSTPSKPPSSPEKPSPPKEPVSSPPQTPKSSPPPAPVSSPPPTPVSSPPALAPV 758
Query: 480 AAPPSAEAKPPEAARPADEPTPASKCCSKP 509
++PPS ++ PP A P P PA + S P
Sbjct: 759 SSPPSVKSSPPPA--PLSSPPPAPQVKSSP 786
Score = 44.5 bits (103), Expect = 0.003
Identities = 62/262 (23%), Positives = 93/262 (34%), Gaps = 17/262 (6%)
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAG--PGFEGPGGEPIREVEPMLPPSS 308
V P L V +P LS P ++ P + P + P L P S
Sbjct: 749 VSSPPALAPVSSPPSVKSSPPPAPLSSPPPAPQVKSSPPPVQVSSPPPAPKSSPPLAPVS 808
Query: 309 SEPILVEQRAEPEEPGATRSRA--QSERALPEALPPPATAHRNFHLDPKLADILSPRLIR 366
S P VE+ + P P ++ A S + + PPP P A + SP L
Sbjct: 809 SPP-QVEKTSPPPAPLSSPPLAPKSSPPHVVVSSPPPVVKS-----SPPPAPVSSPPLTP 862
Query: 367 RGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE--PPTS 424
+ + SS E+ + T +S PS P + P +V PP
Sbjct: 863 KPASPPAHVSSPPEVVKPSTPPAPTTVISP--PSEPKSSPPPTPVSLPPPIVKSSPPPAM 920
Query: 425 VGPPVAVPEPIGFP---TRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAA 481
V P P+ P + PT+++ S PAPV + P + +
Sbjct: 921 VSSPPMTPKSSPPPVVVSSPPPTVKSSPPPAPVSSPPATPKSSPPPAPVNLPPPEVKSSP 980
Query: 482 PPSAEAKPPEAARPADEPTPAS 503
PP+ + PP A + + P P S
Sbjct: 981 PPTPVSSPPPAPKSSPPPAPMS 1002
Score = 39.1 bits (89), Expect = 0.12
Identities = 56/239 (23%), Positives = 83/239 (34%), Gaps = 32/239 (13%)
Query: 265 IAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
+ +P +S P + A P P V+P PP+ + I + P EP
Sbjct: 845 VVKSSPPPAPVSSPPLTPKPASP--PAHVSSPPEVVKPSTPPAPTTVI-----SPPSEPK 897
Query: 325 ATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRD 384
+ S P +LPPP P A + SP + + S SS +
Sbjct: 898 S------SPPPTPVSLPPPIVKS-----SPPPAMVSSPPMTPKSSPPPVVVSSPPPTVKS 946
Query: 385 EGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPT 444
S A P S + PA P+ +P P PP P P+ P A +
Sbjct: 947 SPPPAPVSS-PPATPKS-----SPPPA---PVNLPPPEVKSSPP---PTPVSSPPPAPKS 994
Query: 445 LQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPAS 503
P+ ++ + S PAPV P + PP+ + PP + P P S
Sbjct: 995 SPPPA--PMSSPPPPEVKSPPPPAPVSSPPPPVKSPPPPAPVSSPPPPVKSPPPPAPVS 1051
Score = 32.8 bits (73), Expect = 9.1
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 410 PATFMPIVVPEPPTSVGP-PVAVPEPIGFPT-RAHPTLQAPSLEDVTKQYMLNLHSGEVP 467
PA P+ P P V P P+ P P+ P PT +P +D VP
Sbjct: 425 PAASAPMPSPHTPPDVSPEPLPEPSPVPAPAPMPMPTPHSPPADDY------------VP 472
Query: 468 APVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQ 510
PV P +PP+ P A P P+ S PQ
Sbjct: 473 PTPPV-----PGKSPPATSPSPQVQPPAASTPPPSLVKLSPPQ 510
>emb|CAB60727.1| (Y19188) aczonin [Homo sapiens]
Length = 759
Score = 48.0 bits (112), Expect = 2e-04
Identities = 60/254 (23%), Positives = 86/254 (33%), Gaps = 61/254 (24%)
Query: 268 KAPKKKSLSDPSR------RGELAGPGFEGPGGEPIREVEPMLPPS------SSEPILVE 315
K P ++ S P RGE P P PI++ P PP+ S+P +
Sbjct: 235 KLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAK 294
Query: 316 QRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPAR 375
A+P G T+ AQ + + PP T P G K PA
Sbjct: 295 PPAQPS--GLTKPLAQQPGTVKPPVQPPGTT--------------KPPAQPLGPAKPPA- 337
Query: 376 SSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPI 435
Q+ ++ S +Q G + A+P P V P GP + +
Sbjct: 338 ---QQTGSEKPSSEQPGPKALAQP---------------PGVGKTPAQQPGPAKPPTQQV 379
Query: 436 GFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARP 495
G P P Q P L+ K P P P + P + PP+ P
Sbjct: 380 GTP---KPLAQQPGLQSPAK----------APGPTKTPAQTKPPSQQPGSTKPPPQQPGP 426
Query: 496 ADEPTPASKCCSKP 509
A +P+P +KP
Sbjct: 427 A-KPSPQQPGSTKP 439
>pir||T38819 wiskott-aldrich syndrome protein homolog 1 - fission yeast
(Schizosaccharomyces pombe)
emb|CAB11718.1| (Z98980) wiskott-aldrich syndrome protein homolog 1
[Schizosaccharomyces pombe]
Length = 574
Score = 48.0 bits (112), Expect = 2e-04
Identities = 84/363 (23%), Positives = 118/363 (32%), Gaps = 44/363 (12%)
Query: 180 SLSDPIP--QRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGS 237
S + P+P + + A S+ P + LL SL P S +D + G S +
Sbjct: 160 SAAPPVPGKENYNAVGSKSPN----EPELLNSLDP-------SLIDSLMKMGISQDQIAE 208
Query: 238 EESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPI 297
+ +S T + I P ++ S + P G P
Sbjct: 209 NADFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Query: 298 REVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLA 357
+ P S P + P P ++R A + A + PPP R P +
Sbjct: 269 NSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328
Query: 358 DILS----------PRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHA 407
+ S PR GS P + S TG SSR V +
Sbjct: 329 NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP 388
Query: 408 SVPATFMPIVVPEPPTSVGPPVA---------VPEPIGFPTRAHPTLQA---PSLEDVTK 455
P P +P PP+ VP P P A P+L PSL
Sbjct: 389 PAP----PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 456 QYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEP-TPASKCCSKPQVDMR 514
S + P+P MP P PP+A A PP PA P P + PQ D R
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPAPPP---APAPAPAAPVASIAELPQQDGR 500
Query: 515 KHV 517
++
Sbjct: 501 ANL 503
Score = 36.0 bits (81), Expect = 1.1
Identities = 50/204 (24%), Positives = 69/204 (33%), Gaps = 19/204 (9%)
Query: 33 IVQDQYVQEARQVFEKIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESS-LT 91
I QDQ + A V + A + APP P +R LS P +
Sbjct: 201 ISQDQIAENADFVKAYLNE-SAGTPTSTSAPPIPPSIPS--SRPPERVPSLSAPAPPPIP 257
Query: 92 DEGIGADPEPPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPG 151
G PP + + M P +S+++ P + S A PP P
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSM-NPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316
Query: 152 ALRRRRKVPPSGSGGSEFS---------NGEAGE-----AYRSLSDPIPQRHRAATSEEP 197
RR R PP G+G S S + AG RS P P R +T +P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
Query: 198 TGFSVDSNLLGSLSPKTGLPATSA 221
S + +P +P SA
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSA 400
>gb|AAA28967.1| (K02623) tropomyosin isoform 34 (9B) [Drosophila melanogaster]
Length = 510
Score = 48.0 bits (112), Expect = 2e-04
Identities = 61/232 (26%), Positives = 78/232 (33%), Gaps = 52/232 (22%)
Query: 276 SDPSRRGELAGPGFE-----GPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRA 330
++ R ELA G E G GG P P P +++EP + AEPE+P
Sbjct: 326 AEAKARAELAALGEEAGAEAGEGGAPAEGAAPGEPGAATEPGVEAPPAEPEDPPPP---- 381
Query: 331 QSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQ 390
PPP + L P+ A++ R G PA E EG+
Sbjct: 382 ----------PPPPPFEYSIDLPPEGAEVPYVRNAEPGDFAPPA-----EAAPAEGAPPA 426
Query: 391 TGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSL 450
G+ PA P + G P A P P AP+
Sbjct: 427 EGA----------------PAAEGAAPAEGAPAAEGAPPAEGAPAPAPAEGEAAPPAPAA 470
Query: 451 EDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPA 502
E + P P P + P AP EA P EAA PA E PA
Sbjct: 471 EG---------DAAAAPPPPPAEGEAAP--APAEGEAPPAEAA-PAAEAPPA 510
>pir||A40333 collagen alpha 1'(II) chain precursor - African clawed frog
Length = 1492
Score = 48.0 bits (112), Expect = 2e-04
Identities = 81/282 (28%), Positives = 99/282 (34%), Gaps = 35/282 (12%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ GA +DG PPG P A RGQ GP+ GA+ EP A
Sbjct: 579 KVGPSGAAGEDGRPGPPG-PQGA----RGQPGVMGFPGPK--------GANGEPGKAGEK 625
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPS-GSGG 166
GLG R L +T GP G + PP P + P S G GG
Sbjct: 626 GLGGAPGLRGLPGKDGETGAQGPNGPAGPAGER--GEQGPPGPSGFQGLPGPPGSPGEGG 683
Query: 167 SEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGL 226
G GEA + P+ R E G S L GS GLP T D
Sbjct: 684 KPGDQGVPGEA-GAAGLVGPRGERGFPGER--GSSGPQGLQGS----RGLPGTPGTDGPK 736
Query: 227 TSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDR--IAGKAPKKKSLSDPSR--RG 282
+ G++ G Q + +G + DR K P+ D SR G
Sbjct: 737 GATGPSGPNGAQGPPGLQGMPGE--RGAAGISGPKGDRGDTGEKGPEGAPGKDGSRGLTG 794
Query: 283 ELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
L PG GP GE E P PP +V R P + G
Sbjct: 795 PLGPPGPAGPNGEK-GESGPSGPPG-----IVGARGAPGDRG 830
Score = 46.9 bits (109), Expect = 5e-04
Identities = 70/260 (26%), Positives = 89/260 (33%), Gaps = 48/260 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLG 110
GA D G + PPG +AG G Q L G + +G P P P A G
Sbjct: 824 GAPGDRGENGPPGPAGFAGPP--GSDGQAGLKGDQGESGQKGDAGAPGPQGPSGAPGPQG 881
Query: 111 TTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS 170
TG+ P + AQ G + G P P P P GS G E
Sbjct: 882 PTGVNGPKGARGAQGPAGATGFPGAAGRVGTPGPNGNPGPPG--------PPGSAGKEGP 933
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
G G+A PTG + D L G PA + ++G
Sbjct: 934 KGVRGDA------------------GPTGRAGDPGLQG--------PAGAPGEKGEPG-- 965
Query: 231 SDWSVGSEESKGYQEVI--QSIVQGPGTLGRVVDDRIAGKA--PKKK----SLSDPSRRG 282
D G + G Q + + IV PG G + G + P K+ S D G
Sbjct: 966 EDGPSGPDGPSGPQGLSGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPG 1025
Query: 283 ELAGPGFEGPGGEPIREVEP 302
+ PG GP GE RE P
Sbjct: 1026 PVGPPGLTGPAGETGREGNP 1045
Score = 35.2 bits (79), Expect = 1.8
Identities = 81/338 (23%), Positives = 105/338 (30%), Gaps = 51/338 (15%)
Query: 51 RMGAQQDDGSDAPPGSPDWAGDV----------TRGQRSQEELSGPESSLTDEG------ 94
R+G +G+ PPG P AG G+ L GP + ++G
Sbjct: 909 RVGTPGPNGNPGPPGPPGSAGKEGPKGVRGDAGPTGRAGDPGLQGPAGAPGEKGEPGEDG 968
Query: 95 -IGAD-PEPPVAAFCGLGTTGM--------WRPLSSSSAQTNHH-GPGTEDSLGGWALVS 143
G D P P G G+ + L S + GPG+ G V
Sbjct: 969 PSGPDGPSGPQGLSGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPGPVG 1028
Query: 144 PETPPTPGALRRRRKVP----PSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTG 199
P P R P P G G+ G+ GE + P A PTG
Sbjct: 1029 PPGLTGPAGETGREGNPGSDGPPGRDGATGIKGDRGETGPIGAPGAPGSPGAPGPVGPTG 1088
Query: 200 FSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSD-------WSVGSEESKGYQEV--IQSI 250
D GS P P+ A GL G KG++ +Q +
Sbjct: 1089 KQGDRGESGSQGPLG--PSGPAGARGLNGPQGPRGDKGEAGEAGERGQKGHRGFTGLQGL 1146
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEP-----IREVEPMLP 305
PGT G AG + + G+ G GP G P E P P
Sbjct: 1147 PGPPGTAGDQGATGSAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP 1206
Query: 306 PSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPP 343
P S P P PG S A + + PE P P
Sbjct: 1207 PGQSGP---PGPPGPPGPGIDMS-AFAGLSQPEKGPDP 1240
Score = 32.8 bits (73), Expect = 9.1
Identities = 68/291 (23%), Positives = 95/291 (32%), Gaps = 42/291 (14%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGT 111
G + + GS P G+P AG+ RG R + +GP + G + P G
Sbjct: 473 GPKGEIGSAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFP-------GQ 525
Query: 112 TGMWRPLSSSSAQTNHHGPGTEDSLGGWALVS-PETPPTPGALRRRRKVPPSGSGGSEFS 170
G+ P A PG GG P P PGA + +G G
Sbjct: 526 DGLAGP---KGAPGERGVPGLGGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 582
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
+G AGE R P PQ R ++G PK +
Sbjct: 583 SGAAGEDGRP-GPPGPQGARG-----------QPGVMGFPGPK--------------GAN 616
Query: 231 SDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFE 290
+ E+ G ++ + G G + AG A ++ P G PG
Sbjct: 617 GEPGKAGEKGLGGAPGLRGLPGKDGETGAQGPNGPAGPAGERGEQGPPGPSGFQGLPGPP 676
Query: 291 GPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRA----QSERALP 337
G GE + + +P + LV R E PG S Q R LP
Sbjct: 677 GSPGEGGKPGDQGVPGEAGAAGLVGPRGERGFPGERGSSGPQGLQGSRGLP 727
>pir||S23809 collagen alpha 2(I) chain homolog - sea urchin (Strongylocentrotus
purpuratus)
gb|AAA30035.1| (M92040) alpha-1 collagen [Strongylocentrotus purpuratus]
Length = 1414
Score = 47.6 bits (111), Expect = 3e-04
Identities = 79/310 (25%), Positives = 107/310 (34%), Gaps = 58/310 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGI----------------G 96
G + DGS P G+P AG GQ + +GP S D G G
Sbjct: 249 GERGSDGSPGPVGAPGPAGP--SGQPGERGRTGPAGSQGDRGADGATGSQGPPGSTGPAG 306
Query: 97 ADPEPPVAAFCG-------LGTTGMW-----RPLSSSSAQTNHHG-PGTEDSLGGWALVS 143
A P ++ G G+ G+ R S QT G PG + S G
Sbjct: 307 APGMPGISGAKGDAGSPGARGSPGLQGARGERGSEGSQGQTGPPGVPGRDGSNGAKGSAG 366
Query: 144 PE----TPPTPGALRRRRKVPPSGSGGSEFSNGEAGE----AYRSLSDPIPQRHRAATSE 195
P TP PGA R P+GS G S G+ G + S P+ R +
Sbjct: 367 PSGAQGTPGFPGA---RGPPGPAGSPGPAGSKGDQGNPGQPGAQGESGPLGPRGETGPAG 423
Query: 196 EP-----TGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSI 250
P +G LG P G+ M SG + G+ +KG + +
Sbjct: 424 PPGAQGESGERGSRGALGPAGPPGGVGERGPMGPPGMSG----APGAPGAKGDRGL---- 475
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSE 310
PG G AG++ + P +RG PG +G G+P P P +S
Sbjct: 476 ---PGERGSAGSKGSAGESGRPGEPGMPGQRGLTGPPGKQGRDGKPGPAGAPGEPGNSGP 532
Query: 311 PILVEQRAEP 320
QR P
Sbjct: 533 AGASGQRGLP 542
Score = 44.9 bits (104), Expect = 0.002
Identities = 60/247 (24%), Positives = 84/247 (33%), Gaps = 34/247 (13%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGT 111
G Q GS PPG P +GD +G SGPE P A G
Sbjct: 600 GPQGQAGSMGPPGPPGASGDAGAQGDNGPPGESGPEG-------------PPGARGERGA 646
Query: 112 TGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSN 171
G P + AQ G G + P PG ++ ++ P G+ G +
Sbjct: 647 PGERGPQGLTGAQGRR---GIGGRAGNYGATGP-----PG---QKGEMGPPGNVGLQGPP 695
Query: 172 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPK--TGLPATSAMDEGLTSG 229
GE G + + P + + P G D +G + P +G+P + G
Sbjct: 696 GELGPSGPPGARGPPGPSGSPGPDGPAGAEGDRGPVGPMGPSGPSGMPGERGDNGEPGPG 755
Query: 230 HSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGF 289
+ G G Q PG+ G +G + L RGE GPG
Sbjct: 756 GAPGQRGDPGDLGPQG-------SPGSPGFAGPPGRSGNPGPQGELGPTGARGETGGPGP 808
Query: 290 EGPGGEP 296
GP G+P
Sbjct: 809 SGPTGDP 815
Score = 38.3 bits (87), Expect = 0.21
Identities = 73/304 (24%), Positives = 95/304 (31%), Gaps = 35/304 (11%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + D+G P G+P GQR GP+ S G P G
Sbjct: 744 GERGDNGEPGPGGAP--------GQRGDPGDLGPQGSPGSPGFAGPPGRS-------GNP 788
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETP-PTPGALRRRRKVPPSGSGGSEFSN 171
G L + A+ GPG G P+ P PG R + P G GG
Sbjct: 789 GPQGELGPTGARGETGGPGPSGPTGD---PGPQGPLGAPGQQGERGETGPQGQGGPPGPI 845
Query: 172 GEAGE-AYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGS-----LSPKTGLPATSAMDEG 225
G G + P A + +P G + GS L+ +TG P+ D+G
Sbjct: 846 GSLGAPGAQGPPGPTGPSGNAGSPGQP-GARGEPGQSGSPGQPGLAGRTG-PSGERGDKG 903
Query: 226 LTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELA 285
Q I + G G G AG S + G+
Sbjct: 904 NDGQSGPPGPPGPAGPAGQSGILGLAGGSGPRG---PGGPAGPPGAAGSRGPAGKSGDRG 960
Query: 286 GPGFEGPGGEPIREVEPMLPPSSSE---PILVEQRAEPEEPGATRSRAQSERALPEALPP 342
PG GP G P E +P S P R E + GA S A P +
Sbjct: 961 SPGAVGPAGNPGPAGENGMPGSDGNDGAPGPQGSRGEKGDTGA--SGANGSPGAPGPIGA 1018
Query: 343 PATA 346
P A
Sbjct: 1019 PGAA 1022
Score = 36.7 bits (83), Expect = 0.61
Identities = 61/246 (24%), Positives = 84/246 (33%), Gaps = 24/246 (9%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + +DG PPG P AG Q + G G G PP AA G
Sbjct: 900 GDKGNDGQSGPPGPPGPAGPA-----GQSGILGLAGGSGPRGPGGPAGPPGAA-GSRGPA 953
Query: 113 GMWRPLSSSSA--QTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS 170
G S A + GP E+ + G S PG R + +G+ G+ S
Sbjct: 954 GKSGDRGSPGAVGPAGNPGPAGENGMPG----SDGNDGAPGPQGSRGEKGDTGASGANGS 1009
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
G G PI AA + P G + + G L P +T SG
Sbjct: 1010 PGAPG--------PI-GAPGAAGASGPRGETGSTGAPGPLGPTGARGSTGPAGPSGPSGP 1060
Query: 231 SD--WSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPG 288
+ G KG+ V + GT G + + G+ ++ + P RG G
Sbjct: 1061 AGERGETGPAGHKGHPGV-SGLPGLQGTSGPMGEPGAPGEQGQQGTRGLPGARGSNGNDG 1119
Query: 289 FEGPGG 294
GP G
Sbjct: 1120 PSGPRG 1125
Score = 33.2 bits (74), Expect = 7.0
Identities = 62/262 (23%), Positives = 77/262 (28%), Gaps = 41/262 (15%)
Query: 59 GSDAPPGSPDWAGDV----TRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLGTT 112
G+ PPG G +G + SGP + G P P P A G
Sbjct: 672 GATGPPGQKGEMGPPGNVGLQGPPGELGPSGPPGARGPPGPSGSPGPDGPAGAEGDRGPV 731
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGG-----------WALVSPETPPTPGALRRRRKVPP 161
G P S S G E GG SP +P G R P
Sbjct: 732 GPMGP-SGPSGMPGERGDNGEPGPGGAPGQRGDPGDLGPQGSPGSPGFAGPPGRSGNPGP 790
Query: 162 SGSGGSEFSNGEAGEAYRS--LSDPIPQRHRAATSEE-------PTGFSVDSNLLGSLSP 212
G G + GE G S DP PQ A ++ P G +GSL
Sbjct: 791 QGELGPTGARGETGGPGPSGPTGDPGPQGPLGAPGQQGERGETGPQGQGGPPGPIGSL-- 848
Query: 213 KTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKK 272
G P + S G ++G PG G +AG+
Sbjct: 849 --GAPGAQGPPGPTGPSGNAGSPGQPGARGE----------PGQSGSPGQPGLAGRTGPS 896
Query: 273 KSLSDPSRRGELAGPGFEGPGG 294
D G+ PG GP G
Sbjct: 897 GERGDKGNDGQSGPPGPPGPAG 918
>gb|AAF50773.1| (AE003565) CG10625 gene product [Drosophila melanogaster]
Length = 1180
Score = 47.3 bits (110), Expect = 4e-04
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 412 TFMPIVVPEPP----TSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVP 467
T++P P P T P+ VP P P + P+ P + VTK + H+ +VP
Sbjct: 786 TYLPPPPPTPKYVTKTKTPTPIPVPTPAPIPIQYEPSTPRPFEKVVTKLPQIQYHTPQVP 845
Query: 468 APV----PVDMPCLPLAAPPSAEAKPPEAARPA 496
V PV +P P+ PP+ +P RP+
Sbjct: 846 TVVVPKQPVTVPYKPVTRPPTVYVEPKVTPRPS 878
Score = 35.2 bits (79), Expect = 1.8
Identities = 55/223 (24%), Positives = 72/223 (31%), Gaps = 45/223 (20%)
Query: 278 PSRRGELAGPGFEGPGGEPIREVEPMLP-PSSSEPILVEQRAEPEEPGATRSRAQSERAL 336
P+R G PG GP G P R P P P+ P P PG TR
Sbjct: 590 PTRPGPYGPPGPPGPTG-PTRPGPPGPPGPTRPGPPGPPGPTRPGPPGPTRPGPPG---- 644
Query: 337 PEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSR 396
P PP + DP+ +D +P + +Q G +S+
Sbjct: 645 PTRPGPPGPSPN----DPRYSDKETPGYL---------------------PPNQPGKISK 679
Query: 397 ARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQ 456
PS V P T V +P A+ +P T+ T PS + K
Sbjct: 680 PPPSYSQVIEIEPPKT-----VYKPNYEQNNDYAIKKP-SVTTKPPLTYIPPSFPNTPKP 733
Query: 457 YMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEP 499
Y VPAPVP P + K P D+P
Sbjct: 734 Y--------VPAPVPAPQPPSQKITTTIVQPKVPAITIEKDKP 768
>pir||T28770 hypothetical protein W03D2.1 - Caenorhabditis elegans
gb|AAC48255.1| (AF000298) weak similarity to collagens; glycine- and proline-rich
[Caenorhabditis elegans]
Length = 539
Score = 47.3 bits (110), Expect = 4e-04
Identities = 76/293 (25%), Positives = 93/293 (30%), Gaps = 41/293 (13%)
Query: 86 PESSLTDEGIGADPEPPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPE 145
P+ S G G+ P PP A TG P + S G G SP
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG----SPP 319
Query: 146 TPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSN 205
PP P +PP +GGS G S P Q+ +A PTG
Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPPAGTG-----SPPPPPRQKRQAPERSPPTG------ 368
Query: 206 LLGSLSPKTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRI 265
SP TG P T G G S SEES +E + +G G G
Sbjct: 369 -----SPPTGSPPTGRPPRG-GPGKS-----SEESSESREGPRGGPRG-GPRG------- 409
Query: 266 AGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPM-LPPSSSEPILVEQRAEPEEPG 324
P+K S R E GP P G P P PP S P P
Sbjct: 410 ---GPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQK 466
Query: 325 ATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSS 377
+ + P PP HR P ++ R RG ++ P S
Sbjct: 467 RQAPEDRPTGSPPTGSPPTGRPHRG---GPGKSESSESREGPRGPRRSPPTGS 516
>pir||A41182 collagen alpha 1(II) chain precursor - mouse
Length = 1419
Score = 47.3 bits (110), Expect = 4e-04
Identities = 72/279 (25%), Positives = 100/279 (35%), Gaps = 38/279 (13%)
Query: 59 GSDAPPGSPDWAG-DVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRP 117
G D PPG+ G G+R ++GP+ D G PE G G TG P
Sbjct: 667 GPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVG-EKGPEGAPGKDGGRGLTGPIGP 725
Query: 118 LSSSSAQTNHHG---PGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEA 174
+ A PG S G A +P P G P G+ G + G+
Sbjct: 726 PGPAGANGEKGEVGPPGPSGSTG--ARGAPGEPGETGPPGPAGFAGPPGADGQPGAKGDQ 783
Query: 175 GEAYRS--LSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLP-ATSAMDEGLTS 228
GEA + P PQ A + PTG + G+ P TG P A + +
Sbjct: 784 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGAN 843
Query: 229 GHSDWS-----VGSEESKGYQ-----------EVIQSIVQGPGTLGRVVDDRIAGK---- 268
G+ + G + KG + +Q PG G DD +G
Sbjct: 844 GNPGPAGPPGPAGKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPP 903
Query: 269 -----APKKKSLSDPSRRGELAGPGFEGPGGEPIREVEP 302
A ++ + P +RGE PG GP GEP ++ P
Sbjct: 904 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 942
Score = 46.5 bits (108), Expect = 7e-04
Identities = 79/287 (27%), Positives = 100/287 (34%), Gaps = 41/287 (14%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ GA +DG PPG P A RGQ GP+ GA+ EP A
Sbjct: 506 KVGPSGAPGEDGRPGPPG-PQGA----RGQPGVMGFPGPK--------GANGEPGKAGEK 552
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGG 166
GL R L +T GP G + P P + P P G GG
Sbjct: 553 GLAGAPGLRGLPGKDGETGAAGPPGPSGPAGER--GEQGAPGPSGFQGLPGPPGPPGEGG 610
Query: 167 SEFSNGEAGEA-YRSLSDPIPQRHRAATSEEPTGFSVDSNLLGS--LSPKTGLPATSAMD 223
+ G GEA L P +R GF + G+ L GLP T D
Sbjct: 611 KQGDQGIPGEAGAPGLVGPRGER----------GFPGERGSPGAQGLQGPRGLPGTPGTD 660
Query: 224 EGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDR--IAGKAPKKKSLSDPSR- 280
+ D G++ G Q + +G + DR + K P+ D R
Sbjct: 661 GPKGAAGPDGPPGAQGPPGLQGMPGE--RGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRG 718
Query: 281 -RGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGAT 326
G + PG G GE EV P P S+ R P EPG T
Sbjct: 719 LTGPIGPPGPAGANGEK-GEVGPPGPSGST-----GARGAPGEPGET 759
Score = 41.8 bits (96), Expect = 0.018
Identities = 66/253 (26%), Positives = 84/253 (33%), Gaps = 34/253 (13%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLG 110
GA + G PPG +AG G Q G + +G P P P A G
Sbjct: 751 GAPGEPGETGPPGPAGFAGPP--GADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQG 808
Query: 111 TTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS 170
TG+ P + AQ PG G V P PGA P G G +
Sbjct: 809 PTGVTGPKGARGAQGP---PGATGFPGAAGRVGP-----PGANGNPGPAGPPGPAGKDGP 860
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
G G+ S P P R + P G + G P +GL +GL
Sbjct: 861 KGVRGD-----SGP-PGRAGDPGLQGPAGAPGEKGEPGDDGP-SGLDGPPG-PQGLAGQR 912
Query: 231 SDWSV-GSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGF 289
+ G +G+ + PG G GK + D G + PG
Sbjct: 913 GIVGLPGQRGERGFPGL-------PGPSGE------PGKQGAPGASGDRGPPGPVGPPGL 959
Query: 290 EGPGGEPIREVEP 302
GP GEP RE P
Sbjct: 960 TGPAGEPGREGSP 972
Score = 37.5 bits (85), Expect = 0.36
Identities = 80/346 (23%), Positives = 103/346 (29%), Gaps = 67/346 (19%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADP------------- 99
GAQ G PGSP AG G + + G + S GI P
Sbjct: 319 GAQGSRGEPGNPGSPGPAG--ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 376
Query: 100 ------------EPPVAAFCG----LGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVS 143
EP +A F G G TG P + G GG +
Sbjct: 377 ATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIG 436
Query: 144 PETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEP------ 197
P P GA R G G + + GE G + L+ P EP
Sbjct: 437 P--PGERGAPGNRGFPGQDGLAGPKGAPGERGPS--GLAGPKGANGDPGRPGEPGLPGAR 492
Query: 198 --TGFSVDSNLLGSLSPKTGLPATSAM-----------DEGLTSGHSDWSVGSEESKGYQ 244
TG D+ G + P +G P G+ E K +
Sbjct: 493 GLTGRPGDAGPQGKVGP-SGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 551
Query: 245 EVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPG---FE------GPGGE 295
+ + PG G D G A RGE PG F+ GP GE
Sbjct: 552 K---GLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGPPGPPGE 608
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALP 341
++ + +P + P LV R E PG S P LP
Sbjct: 609 GGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 654
Score = 32.8 bits (73), Expect = 9.1
Identities = 39/128 (30%), Positives = 44/128 (33%), Gaps = 12/128 (9%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV----TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCG 108
GA G+ PPGSP AG RG+ + GP GI A P+ P
Sbjct: 994 GALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-AGPQGPRGDKGE 1052
Query: 109 LGTTGMWRPLSSSSAQTNHHG-PGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGS 167
G G R L T G PG G P P P R P G G
Sbjct: 1053 SGEQGE-RGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP-----RGPPGPVGPSGK 1106
Query: 168 EFSNGEAG 175
+ SNG G
Sbjct: 1107 DGSNGIPG 1114
>pir||B41182 collagen alpha 1(II) chain precursor (long splice form) - mouse
Length = 1487
Score = 47.3 bits (110), Expect = 4e-04
Identities = 72/279 (25%), Positives = 100/279 (35%), Gaps = 38/279 (13%)
Query: 59 GSDAPPGSPDWAG-DVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRP 117
G D PPG+ G G+R ++GP+ D G PE G G TG P
Sbjct: 735 GPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVG-EKGPEGAPGKDGGRGLTGPIGP 793
Query: 118 LSSSSAQTNHHG---PGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNGEA 174
+ A PG S G A +P P G P G+ G + G+
Sbjct: 794 PGPAGANGEKGEVGPPGPSGSTG--ARGAPGEPGETGPPGPAGFAGPPGADGQPGAKGDQ 851
Query: 175 GEAYRS--LSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLP-ATSAMDEGLTS 228
GEA + P PQ A + PTG + G+ P TG P A + +
Sbjct: 852 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGAN 911
Query: 229 GHSDWS-----VGSEESKGYQ-----------EVIQSIVQGPGTLGRVVDDRIAGK---- 268
G+ + G + KG + +Q PG G DD +G
Sbjct: 912 GNPGPAGPPGPAGKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPP 971
Query: 269 -----APKKKSLSDPSRRGELAGPGFEGPGGEPIREVEP 302
A ++ + P +RGE PG GP GEP ++ P
Sbjct: 972 GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 1010
Score = 46.5 bits (108), Expect = 7e-04
Identities = 79/287 (27%), Positives = 100/287 (34%), Gaps = 41/287 (14%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ GA +DG PPG P A RGQ GP+ GA+ EP A
Sbjct: 574 KVGPSGAPGEDGRPGPPG-PQGA----RGQPGVMGFPGPK--------GANGEPGKAGEK 620
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGG 166
GL R L +T GP G + P P + P P G GG
Sbjct: 621 GLAGAPGLRGLPGKDGETGAAGPPGPSGPAGER--GEQGAPGPSGFQGLPGPPGPPGEGG 678
Query: 167 SEFSNGEAGEA-YRSLSDPIPQRHRAATSEEPTGFSVDSNLLGS--LSPKTGLPATSAMD 223
+ G GEA L P +R GF + G+ L GLP T D
Sbjct: 679 KQGDQGIPGEAGAPGLVGPRGER----------GFPGERGSPGAQGLQGPRGLPGTPGTD 728
Query: 224 EGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDR--IAGKAPKKKSLSDPSR- 280
+ D G++ G Q + +G + DR + K P+ D R
Sbjct: 729 GPKGAAGPDGPPGAQGPPGLQGMPGE--RGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRG 786
Query: 281 -RGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGAT 326
G + PG G GE EV P P S+ R P EPG T
Sbjct: 787 LTGPIGPPGPAGANGEK-GEVGPPGPSGST-----GARGAPGEPGET 827
Score = 41.8 bits (96), Expect = 0.018
Identities = 66/253 (26%), Positives = 84/253 (33%), Gaps = 34/253 (13%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLG 110
GA + G PPG +AG G Q G + +G P P P A G
Sbjct: 819 GAPGEPGETGPPGPAGFAGPP--GADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQG 876
Query: 111 TTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS 170
TG+ P + AQ PG G V P PGA P G G +
Sbjct: 877 PTGVTGPKGARGAQGP---PGATGFPGAAGRVGP-----PGANGNPGPAGPPGPAGKDGP 928
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
G G+ S P P R + P G + G P +GL +GL
Sbjct: 929 KGVRGD-----SGP-PGRAGDPGLQGPAGAPGEKGEPGDDGP-SGLDGPPG-PQGLAGQR 980
Query: 231 SDWSV-GSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGF 289
+ G +G+ + PG G GK + D G + PG
Sbjct: 981 GIVGLPGQRGERGFPGL-------PGPSGE------PGKQGAPGASGDRGPPGPVGPPGL 1027
Query: 290 EGPGGEPIREVEP 302
GP GEP RE P
Sbjct: 1028 TGPAGEPGREGSP 1040
Score = 37.5 bits (85), Expect = 0.36
Identities = 80/346 (23%), Positives = 103/346 (29%), Gaps = 67/346 (19%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADP------------- 99
GAQ G PGSP AG G + + G + S GI P
Sbjct: 387 GAQGSRGEPGNPGSPGPAG--ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 444
Query: 100 ------------EPPVAAFCG----LGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVS 143
EP +A F G G TG P + G GG +
Sbjct: 445 ATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGGAGPIG 504
Query: 144 PETPPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEP------ 197
P P GA R G G + + GE G + L+ P EP
Sbjct: 505 P--PGERGAPGNRGFPGQDGLAGPKGAPGERGPS--GLAGPKGANGDPGRPGEPGLPGAR 560
Query: 198 --TGFSVDSNLLGSLSPKTGLPATSAM-----------DEGLTSGHSDWSVGSEESKGYQ 244
TG D+ G + P +G P G+ E K +
Sbjct: 561 GLTGRPGDAGPQGKVGP-SGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 619
Query: 245 EVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPG---FE------GPGGE 295
+ + PG G D G A RGE PG F+ GP GE
Sbjct: 620 K---GLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGPSGFQGLPGPPGPPGE 676
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALP 341
++ + +P + P LV R E PG S P LP
Sbjct: 677 GGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 722
Score = 32.8 bits (73), Expect = 9.1
Identities = 39/128 (30%), Positives = 44/128 (33%), Gaps = 12/128 (9%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV----TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCG 108
GA G+ PPGSP AG RG+ + GP GI A P+ P
Sbjct: 1062 GALGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-AGPQGPRGDKGE 1120
Query: 109 LGTTGMWRPLSSSSAQTNHHG-PGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGS 167
G G R L T G PG G P P P R P G G
Sbjct: 1121 SGEQGE-RGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP-----RGPPGPVGPSGK 1174
Query: 168 EFSNGEAG 175
+ SNG G
Sbjct: 1175 DGSNGIPG 1182
>dbj|BAA99921.1| (AP001306) contains similarity to cell wall-plasma membrane linker
protein~gene_id:MKA23.5 [Arabidopsis thaliana]
Length = 1480
Score = 46.9 bits (109), Expect = 5e-04
Identities = 61/217 (28%), Positives = 80/217 (36%), Gaps = 24/217 (11%)
Query: 305 PPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRL 364
PP + PI A+P P +T ++ A P A PP T P + +P L
Sbjct: 453 PPVETPPIATPPTAKP--PISTPPISKPPVATPPAATPPITTPT-----PVKPPVATPPL 505
Query: 365 IRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE---P 421
K P + + A P + A+ P P+V P P
Sbjct: 506 AIPPVAKPPVVTP--PTATPPIATPPIAKSPVATPPTATPPVATPPIAKPPVVTPPTTTP 563
Query: 422 PTSVGP----PVAVPEPIGFPTRAHPTLQAPSLED---VTKQYMLNLHSGEVPAPVPVDM 474
PT+ P PVA P PI P A P + P + T + PA PV
Sbjct: 564 PTATPPVAKPPVATP-PIATPPTAKPPISTPPISKSPVATPPAATPPITTPPPAKPPVAT 622
Query: 475 PCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQV 511
P P+A PP A KPP A P P A+ +KP V
Sbjct: 623 P--PIATPPIA--KPPVATPPTATPPIATSPVAKPPV 655
Score = 46.9 bits (109), Expect = 5e-04
Identities = 59/224 (26%), Positives = 82/224 (36%), Gaps = 25/224 (11%)
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEE---PGATRSRAQSERALPEALPPPATAHRNFHL 352
PI + PP+++ P+ A+P P AT A A P PP
Sbjct: 699 PIATPPVVTPPTATPPVATPPIAKPPTTIPPTATPPVAMPPIATPPTAKPPIAT------ 752
Query: 353 DPKLA--DILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVP 410
P +A + P ++ + P + + + + T + A P A+ P
Sbjct: 753 -PPIAIPPVAKPPVVTPPTATPPIATP--PIAKSPVATPPTATPPVATPPIAKPPVATPP 809
Query: 411 ATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLED---VTKQYMLNLHSGEVP 467
T P P PPVA P PI P A P + P + T + P
Sbjct: 810 TTAPPTATPPVAK---PPVATP-PIATPPTAKPPILTPPISKPPVATPPAATPPITTPPP 865
Query: 468 APVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQV 511
A PV P P+A PP A KPP A P P A+ +KP V
Sbjct: 866 AKPPVATP--PIATPPIA--KPPVATPPTATPPIATSPVAKPPV 905
Score = 46.5 bits (108), Expect = 7e-04
Identities = 55/228 (24%), Positives = 80/228 (34%), Gaps = 23/228 (10%)
Query: 296 PIREVEPMLPPSSSEPILVEQRAEP--------EEPGATRSRAQSERALPEALPPPATAH 347
PI P+ PP ++ P+ + A+P P AT A+S A P PP
Sbjct: 489 PITTPTPVKPPVATPPLAIPPVAKPPVVTPPTATPPIATPPIAKSPVATPPTATPPVAT- 547
Query: 348 RNFHLDPKLA--DILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
P +A +++P + P + + + T + P
Sbjct: 548 ------PPIAKPPVVTPPTTTPPTATPPV--AKPPVATPPIATPPTAKPPISTPPISKSP 599
Query: 406 HASVPATFMPIVVPEP--PTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHS 463
A+ PA PI P P P PP+A P P PT P + +
Sbjct: 600 VATPPAATPPITTPPPAKPPVATPPIATPPIAKPPVATPPTATPPIATSPVAKPPVATPP 659
Query: 464 GEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQV 511
+ P P + P+A PP AKPP A P P A+ + P V
Sbjct: 660 IKTPPPAKPPVAIPPIATPP--VAKPPVATPPTATPPIATPPIATPPV 705
Score = 44.9 bits (104), Expect = 0.002
Identities = 58/233 (24%), Positives = 81/233 (33%), Gaps = 36/233 (15%)
Query: 305 PPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRL 364
PP+++ PI + A P P T A +P PP A + + +P
Sbjct: 235 PPTATPPITIPPVATP--PITTPPIANPPIIMPPIATPPVAAPPITNPPISKPPVTTPPT 292
Query: 365 IRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVP----- 419
K P + S + A P + A P PIV P
Sbjct: 293 TTPPIAKPP-------IATPPISTPPAATPPAATPPITTLPPAKPPVAISPIVTPPVTPI 345
Query: 420 ------EPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLED---VTKQYMLNLHSGEVPAPV 470
PPT+ PPVA P PI P + + P + + T + PA
Sbjct: 346 AQPPVATPPTAT-PPVATP-PIATPPTSKSPISTPPISESPVATPPTATSPIKTPPPAKP 403
Query: 471 PVDMPCL---PLAAPPSAE--------AKPPEAARPADEPTPASKCCSKPQVD 512
PV P + P+A PP+A KPP A P P A+ +KP V+
Sbjct: 404 PVATPPIAKSPIATPPTATPPVATPPIEKPPVATPPTTTPPTATPPVAKPPVE 456
Score = 43.0 bits (99), Expect = 0.008
Identities = 56/224 (25%), Positives = 80/224 (35%), Gaps = 38/224 (16%)
Query: 305 PPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRL 364
PP ++ PI A+P P +T ++S A P A PP T P + +P +
Sbjct: 573 PPVATPPIATPPTAKP--PISTPPISKSPVATPPAATPPITTP-----PPAKPPVATPPI 625
Query: 365 IRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPE---- 420
K P + + A P + A P PI P
Sbjct: 626 ATPPIAKPPVATP--PTATPPIATSPVAKPPVATPPIKTPPPAKPPVAIPPIATPPVAKP 683
Query: 421 ----PPTSVGP----PVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVP--APV 470
PPT+ P P+A P + PT P P + T +P A
Sbjct: 684 PVATPPTATPPIATPPIATPPVVTPPTATPPVATPPIAKPPT----------TIPPTATP 733
Query: 471 PVDMPCLPLAAPPSAE---AKPPEAARPADEPTPASKCCSKPQV 511
PV MP P+A PP+A+ A PP A P +P + + P +
Sbjct: 734 PVAMP--PIATPPTAKPPIATPPIAIPPVAKPPVVTPPTATPPI 775
Score = 42.6 bits (98), Expect = 0.011
Identities = 63/233 (27%), Positives = 87/233 (37%), Gaps = 35/233 (15%)
Query: 296 PIREVEPMLPPSSSEPIL---VEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHL 352
PI + P PP + PI+ V A+P P AT A A P PP +
Sbjct: 321 PITTLPPAKPPVAISPIVTPPVTPIAQP--PVATPPTATPPVATPPIATPPTSK------ 372
Query: 353 DPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSR---ARPSSRHVRHASV 409
+ I +P + P +S + T +++ A P + A+
Sbjct: 373 ----SPISTPPISESPVATPPTATSPIKTPPPAKPPVATPPIAKSPIATPPTATPPVATP 428
Query: 410 PATFMPIVVPE---PPTSVGPPVAVP----EPIGFPTRAHPTLQAPSLEDVTKQYMLNLH 462
P P+ P PPT+ PPVA P PI P A P + P ++K +
Sbjct: 429 PIEKPPVATPPTTTPPTAT-PPVAKPPVETPPIATPPTAKPPISTP---PISKPPVATPP 484
Query: 463 SGEVP--APVPVDMPCL--PLAAPPSAEAKPPEAARPADEPTPASKCCSKPQV 511
+ P P PV P PLA PP AKPP P P A+ +K V
Sbjct: 485 AATPPITTPTPVKPPVATPPLAIPP--VAKPPVVTPPTATPPIATPPIAKSPV 535
Score = 41.8 bits (96), Expect = 0.018
Identities = 55/241 (22%), Positives = 85/241 (34%), Gaps = 43/241 (17%)
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPE---EPGATRSRAQSERALPEALPPPATAHRNFHL 352
PI+ P PP + PI A+P P AT A S A P + PP
Sbjct: 909 PIKTPPPAKPPVAIPPIATPPVAKPPVATPPTATPPIATSPIATPPVVTPPTAT------ 962
Query: 353 DPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPAT 412
+ + +P + + + P + + + A+P A+ P
Sbjct: 963 ----SPVATPPIAKPPTTTPPTATPPVAM-------PPIATPPTAKPPVATPPIANPPVE 1011
Query: 413 FMPIVVP---EPPTSVGPPVAVPEPIGFPTRAHPTLQAP-----------SLEDVTKQYM 458
P+ P +PPT V PP+A P PT PT P ++ +TK +
Sbjct: 1012 KPPVATPPIAKPPT-VLPPIAKPPVETSPTATPPTATPPVAIPPVVKPPVAIPPITKPPV 1070
Query: 459 LNLHSGEVPAPVPVDMPCLPLAAPPSAE--------AKPPEAARPADEPTPASKCCSKPQ 510
P +P + P+ PP A+ + PP A P P A+ +KP
Sbjct: 1071 ATPPVTNPPTAMPPIVTPPPIVTPPIAKSPIATPPVSTPPIAKPPIATPPVATTPIAKPP 1130
Query: 511 V 511
+
Sbjct: 1131 I 1131
Score = 41.0 bits (94), Expect = 0.031
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 410 PATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSL--EDVTKQYMLNLHSGEVP 467
P T P P+PPT PP P+ P A P Q P + + K + P
Sbjct: 177 PTTNPPPSTPQPPTHKPPPCTPTPPVASPPMATPPTQMPPIATPPIAKSPVATPPIATPP 236
Query: 468 -APVPVDMPCL---PLAAPPSAE---AKPPEAARPADEPTPASKCCSKPQV 511
A P+ +P + P+ PP A PP A P P + SKP V
Sbjct: 237 TATPPITIPPVATPPITTPPIANPPIIMPPIATPPVAAPPITNPPISKPPV 287
Score = 41.0 bits (94), Expect = 0.031
Identities = 62/235 (26%), Positives = 83/235 (34%), Gaps = 42/235 (17%)
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPK 355
PI + PP S+ PI A P P AT A+ A P PP
Sbjct: 1095 PIAKSPIATPPVSTPPIAKPPIATP--PVATTPIAKPPIATPPTANPP------------ 1140
Query: 356 LADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMP 415
+ +P + + K P + + + G A P AS P P
Sbjct: 1141 ---VANPPIAKSPIAKPPIATPPTAM--PSIATPPIGKPPVATPPMAKPPVASPPIATPP 1195
Query: 416 IVVPE--PPTSVGPPVAVPEPIGFPTRAHPTLQAPSLED--VTKQYMLNLHSGEVPAPVP 471
I+ P P PPVA P P+ P A P + +E V K + + V P
Sbjct: 1196 IIKPPVATPPITKPPVATP-PVATPPIAKPPVATSPIETPPVAKPPVT---TPPVATPPI 1251
Query: 472 VDMPCL--PLAAPPSAE-------------AKPPEAARPADEPTPASKCCSKPQV 511
V P + P+A PP A+ AKPP A P P A+ +KP V
Sbjct: 1252 VKPPIVTPPIATPPIAKSPIAPPPIGTPPIAKPPVATPPTATPPVATSPIAKPPV 1306
Score = 36.7 bits (83), Expect = 0.61
Identities = 59/245 (24%), Positives = 78/245 (31%), Gaps = 36/245 (14%)
Query: 278 PSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALP 337
P + +A P P PI + PP + P+ A P P A A S P
Sbjct: 1180 PMAKPPVASPPIATP---PIIKPPVATPPITKPPVATPPVATP--PIAKPPVATSPIETP 1234
Query: 338 EALPPPATAHRNFHLDPKLAD--ILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLS 395
PP T P +A I+ P ++ P S +
Sbjct: 1235 PVAKPPVTT-------PPVATPPIVKPPIVTPPIATPPIAKS--PIAPPPIGTPPIAKPP 1285
Query: 396 RARPSSRHVRHASVPATFMPIVVPEP--PTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDV 453
A P + A+ P P+ P P P PPVA P + P P + P
Sbjct: 1286 VATPPTATPPVATSPIAKPPVATPPPATPPVAKPPVATPPTVTPPVATPPIAKPPGARPP 1345
Query: 454 TKQYMLNLHSGEVPAPVPVDMPCL---PLAAPPSAEAKPPEAARPADEPTPASKCCSKPQ 510
A PV P + P+A PP KPP A+ P P A + P
Sbjct: 1346 V-------------ATPPVATPPIAKSPVATPPM--TKPPVASSPIATPPIAKTPIATPP 1390
Query: 511 VDMRK 515
M K
Sbjct: 1391 TTMPK 1395
Score = 34.8 bits (78), Expect = 2.4
Identities = 54/233 (23%), Positives = 74/233 (31%), Gaps = 24/233 (10%)
Query: 292 PGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPPATAHRNFH 351
P P + P P + +P ++ P+ P P P P T H
Sbjct: 46 PPKPPAVKPHPHPKPPTIKPPPPKRHPHPKPPTVKPHPHPKPPTKPHPHPKPPTKP---H 102
Query: 352 LDPKLADILSPRLIR-RGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVP 410
PK I P + R K P H + T +P ++H H P
Sbjct: 103 PHPKPPTIKPPPHPKPRPHPKPPNVKPHPH------PKPPTKPHPHPKPPTKHHPHPKPP 156
Query: 411 ---------ATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNL 461
+ P P+PPT+ PP P P PT S T +
Sbjct: 157 TIKPPPKPPSVKPPPSTPKPPTTNPPPSTPQPPTHKPPPCTPTPPVASPPMATPPTQMPP 216
Query: 462 HSGEVPAPVPVDMPCLPLAAPPSAEAK---PPEAARPADEPTPASKCCSKPQV 511
+ A PV P P+A PP+A PP A P P A+ P +
Sbjct: 217 IATPPIAKSPVATP--PIATPPTATPPITIPPVATPPITTPPIANPPIIMPPI 267
>gb|AAF76433.1|AF272662_1 (AF272662) alpha 1 type V collagen [Rattus norvegicus]
Length = 1840
Score = 46.9 bits (109), Expect = 5e-04
Identities = 72/275 (26%), Positives = 92/275 (33%), Gaps = 40/275 (14%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCG--LGTTGMWR 116
G D PPG + GD RG L GP +L +G P PP A G G
Sbjct: 1050 GKDGPPGLRGFPGD--RG------LPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAG 1101
Query: 117 PLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP----PSGSGGSEFSNG 172
P+ PG G P+ P L+ +P P G G + G
Sbjct: 1102 PIGIPGRPGPQGPPGPAGEKGVPGEEGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKG 1161
Query: 173 EAGEAYR--SLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSG 229
E GE + S D Q T + PTG S G P+ +GL
Sbjct: 1162 EIGEPGQKGSKGDKGEQGPPGPTGPQGPTGQPGPSGADGEPGPRG--------QQGLFG- 1212
Query: 230 HSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGF 289
G E S+G+ PG G V + G +K D + G PG
Sbjct: 1213 ----QKGDEGSRGF----------PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGP 1258
Query: 290 EGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
GP G P + P P V ++ EP E G
Sbjct: 1259 RGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG 1293
>pir||S18803 collagen alpha 1(V) chain - hamster
Length = 1843
Score = 46.9 bits (109), Expect = 5e-04
Identities = 69/272 (25%), Positives = 95/272 (34%), Gaps = 34/272 (12%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCG--LGTTGMWR 116
G D PPG + GD RG L GP +L +G P PP A G G
Sbjct: 1053 GKDGPPGLRGFPGD--RG------LPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAG 1104
Query: 117 PLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGGSEFSNGEAG 175
P+ PG G P+ P L+ +P P+G G +G+ G
Sbjct: 1105 PIGIPGRPGPQGPPGPAGEKGVPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKG 1164
Query: 176 EAYRSLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLPATSAMDEGLTSGHSD 232
E + +P + + E+ P G + +G P G P +GL
Sbjct: 1165 E----IGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ-QGLFG---- 1215
Query: 233 WSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGP 292
G E S+G+ PG G V + G +K D + G PG GP
Sbjct: 1216 -QKGDEGSRGF----------PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1264
Query: 293 GGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G P + P P V ++ EP E G
Sbjct: 1265 SGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG 1296
>dbj|BAA81686.1| (AB029147) expressed in cucumber hypocotyls [Cucumis sativus]
Length = 243
Score = 46.9 bits (109), Expect = 5e-04
Identities = 55/238 (23%), Positives = 84/238 (35%), Gaps = 59/238 (24%)
Query: 284 LAGPGFEGPGGEPIRE------VEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALP 337
+AG G + P P V PP ++ P+ + P P + + P
Sbjct: 16 VAGVGGQSPAAAPTTTPAATPPVAATYPPPAASPV-----STPTNPSPAAAPQKPATPAP 70
Query: 338 EALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRA 397
+ PP + P +A + SP PA S T S+ +
Sbjct: 71 VSTPPASAP-------PAVAPVASP----------PA------------STPPTASVPAS 101
Query: 398 RPSSRHVRHASVPATFMPIVVPEPPTSVG-PPVAVP---EPIGFPTRAHPTLQAPSLEDV 453
P + V +S PA +P P P V PPV+VP P+ PT + P ++ V
Sbjct: 102 SPPAASVPPSSPPAATVPASSPPVPVPVSSPPVSVPVSSPPVPTPTESPPAPESSPPAPV 161
Query: 454 TKQYMLNLHSGEVPAPVP---------VDMPCLPLAAPPSAEAKPPEAARPADEPTPA 502
+ EVPAP P P L PP+ ++ P + P+P+
Sbjct: 162 ASPPV------EVPAPAPSKKKSKKHRAPAPSPALLGPPAPPSEAPAGSEEGPAPSPS 213
Score = 37.5 bits (85), Expect = 0.36
Identities = 31/104 (29%), Positives = 42/104 (39%), Gaps = 9/104 (8%)
Query: 415 PIVVPEPPTSVGPPVAV--PEPIGFP--TRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPV 470
P P + PPVA P P P T +P+ A + T + + PA
Sbjct: 24 PAAAPTTTPAATPPVAATYPPPAASPVSTPTNPSPAAAPQKPATPAPVSTPPASAPPAVA 83
Query: 471 PVDMPCLPLAAPPSAE---AKPPEAARPADEPTPASKCCSKPQV 511
PV P P + PP+A + PP A+ P P A+ S P V
Sbjct: 84 PVASP--PASTPPTASVPASSPPAASVPPSSPPAATVPASSPPV 125
>ref|NP_056549.1| procollagen, type V, alpha 1 [Mus musculus]
dbj|BAA28786.1| (AB009993) collagen a1(V) [Mus musculus]
Length = 1838
Score = 46.9 bits (109), Expect = 5e-04
Identities = 72/278 (25%), Positives = 99/278 (34%), Gaps = 46/278 (16%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTTGMWRPL 118
G D PPG + GD RG L GP +L +G P PP A G+ G P
Sbjct: 1048 GKDGPPGLRGFPGD--RG------LPGPVGALGLKGSEGPPGPPGPA----GSPGERGPA 1095
Query: 119 SSSS--------AQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGGSEF 169
S+ GP E L G P+ P L+ +P P+G G
Sbjct: 1096 GSAGPIGIPGRPGPQGPPGPAGEKGLPGEK--GPQGPAGRDGLQGPVGLPGPAGPVGPPG 1153
Query: 170 SNGEAGEAYRSLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLPATSAMDEGL 226
+G+ GE + +P + + E+ P G + +G P G P +GL
Sbjct: 1154 EDGDKGE----IGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ-QGL 1208
Query: 227 TSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAG 286
G E S+G+ PG G V + G +K D + G
Sbjct: 1209 FG-----QKGDEGSRGF----------PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP 1253
Query: 287 PGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
PG GP G P + P P V ++ EP E G
Sbjct: 1254 PGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG 1291
>gb|AAA93320.1| (U46069) fertilin alpha subunit [Oryctolagus cuniculus]
Length = 919
Score = 46.9 bits (109), Expect = 5e-04
Identities = 38/125 (30%), Positives = 45/125 (35%), Gaps = 21/125 (16%)
Query: 379 QELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFP 438
Q ++ E Q Q +R P R A P P PP PP P+P P
Sbjct: 800 QPAQQQEAPQQQEAPPAREAPPPEAARPAEAP----PPPEQAPPPEQAPPPEAPKPAEAP 855
Query: 439 T--RAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKPPEAARPA 496
A P QAP + A P + P P AAPP PPEAA P
Sbjct: 856 PPPEAAPPPQAPPPPE---------------AAPPPEAPPPPEAAPPPEAPPPPEAAPPP 900
Query: 497 DEPTP 501
+ P P
Sbjct: 901 EAPPP 905
Score = 36.4 bits (82), Expect = 0.80
Identities = 23/85 (27%), Positives = 34/85 (39%), Gaps = 2/85 (2%)
Query: 262 DDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPE 321
++ + P++ + + + + A P E P E R E PP + P EQ PE
Sbjct: 790 EESVEAPPPEQPAQQQEAPQQQEAPPAREAPPPEAARPAEAPPPPEQAPP--PEQAPPPE 847
Query: 322 EPGATRSRAQSERALPEALPPPATA 346
P + E A P PPP A
Sbjct: 848 APKPAEAPPPPEAAPPPQAPPPPEA 872
>sp|P41110|IF4G_RABIT EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA (EIF-4-GAMMA)
(EIF-4G) (EIF4G) (P220)
pir||I46707 translation initiation factor eIF4-gamma - rabbit
gb|AAA31242.1| (L22090) initiation factor 4-gamma [Oryctolagus cuniculus]
Length = 1402
Score = 46.9 bits (109), Expect = 5e-04
Identities = 63/269 (23%), Positives = 93/269 (34%), Gaps = 44/269 (16%)
Query: 254 PGTLGRVVDDRIAGKAPKKKSL--SDPSRRGELAG--PGFEGPGGEPIREVEPMLP-PSS 308
P G V+ + G+ P+ + SD +G + G PG GP P E +P P P+
Sbjct: 12 PPQTGGGVEPQANGETPQVAVIVRSDDRSQGAIIGGRPGLPGPEHSP-SESQPSSPSPTP 70
Query: 309 SEPILVEQRAEP-----EEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPR 363
S P ++E +EP PG T + + + E P A + L P+ + P
Sbjct: 71 SPPPILEPGSEPNLAVLSLPGDTMTSGMIQMPVEEPAPISREAGEPYCLSPEPTPLAEPI 130
Query: 364 LIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPT 423
L + +P S+ + + P + H P +P EP
Sbjct: 131 LEVEVTLSKPV----------PVSEFSSSPIQVLTPLASHKMEIHEPNGVVPSEDLEPEV 180
Query: 424 SVGPPVAVPEPIG----FPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPVDMPCLP- 478
P +A P P P PT Q L L+ P V + C P
Sbjct: 181 ESSPELAPPPPPACLSESPVPIAPTTQPEEL----------LNGAPSPPAVDLSPVCEPE 230
Query: 479 --------LAAPPSAEAKPPEAARPADEP 499
A PP+ + P A PA P
Sbjct: 231 DQAKEDTASATPPAVPSATPATAPPATSP 259
>gb|AAA49679.1| (M63596) alpha-1 type II' collagen [Xenopus laevis]
Length = 1491
Score = 46.9 bits (109), Expect = 5e-04
Identities = 80/282 (28%), Positives = 99/282 (34%), Gaps = 35/282 (12%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ GA +DG PPG P A RGQ GP+ GA+ EP +
Sbjct: 579 KVGPSGAAGEDGRPGPPG-PQGA----RGQPGVMGFPGPK--------GANGEPGKSGEK 625
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPS-GSGG 166
GLG R L +T GP G + PP P + P S G GG
Sbjct: 626 GLGGAPGLRGLPGKDGETGAQGPNGPAGPAGER--GEQGPPGPSGFQGLPGPPGSPGEGG 683
Query: 167 SEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGL 226
G GEA + P+ R E G S L GS GLP T D
Sbjct: 684 KPGDQGVPGEA-GAAGLVGPRGERGFPGER--GSSGPQGLQGS----RGLPGTPGTDGPK 736
Query: 227 TSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDR--IAGKAPKKKSLSDPSR--RG 282
+ G++ G Q + +G + DR K P+ D SR G
Sbjct: 737 GATGPSGPNGAQGPPGLQGMPGE--RGAAGISGPKGDRGDTGEKGPEGAPGKDGSRGLTG 794
Query: 283 ELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
L PG GP GE E P PP +V R P + G
Sbjct: 795 PLGPPGPAGPNGEK-GESGPSGPPG-----IVGARGAPGDRG 830
Score = 46.9 bits (109), Expect = 5e-04
Identities = 70/260 (26%), Positives = 89/260 (33%), Gaps = 48/260 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLG 110
GA D G + PPG +AG G Q L G + +G P P P A G
Sbjct: 824 GAPGDRGENGPPGPAGFAGPP--GSDGQAGLKGDQGESGQKGDAGAPGPQGPSGAPGPQG 881
Query: 111 TTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFS 170
TG+ P + AQ G + G P P P P GS G E
Sbjct: 882 PTGVNGPKGARGAQGPAGATGFPGAAGRVGTPGPNGNPGPPG--------PPGSAGKEGP 933
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
G G+A PTG + D L G PA + ++G
Sbjct: 934 KGVRGDA------------------GPTGRAGDPGLQG--------PAGAPGEKGEPG-- 965
Query: 231 SDWSVGSEESKGYQEVI--QSIVQGPGTLGRVVDDRIAGKA--PKKK----SLSDPSRRG 282
D G + G Q + + IV PG G + G + P K+ S D G
Sbjct: 966 EDGPSGPDGPSGPQGLSGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPG 1025
Query: 283 ELAGPGFEGPGGEPIREVEP 302
+ PG GP GE RE P
Sbjct: 1026 PVGPPGLTGPAGETGREGNP 1045
Score = 36.4 bits (82), Expect = 0.80
Identities = 93/388 (23%), Positives = 122/388 (30%), Gaps = 72/388 (18%)
Query: 51 RMGAQQDDGSDAPPGSPDWAGDV----------TRGQRSQEELSGPESSLTDEG------ 94
R+G +G+ PPG P AG G+ L GP + ++G
Sbjct: 909 RVGTPGPNGNPGPPGPPGSAGKEGPKGVRGDAGPTGRAGDPGLQGPAGAPGEKGEPGEDG 968
Query: 95 -IGAD-PEPPVAAFCGLGTTGM--------WRPLSSSSAQTNHH-GPGTEDSLGGWALVS 143
G D P P G G+ + L S + GPG+ G V
Sbjct: 969 PSGPDGPSGPQGLSGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDRGPPGPVG 1028
Query: 144 PETPPTPGALRRRRKVP----PSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTG 199
P P R P P G G+ G+ GE + P A PTG
Sbjct: 1029 PPGLTGPAGETGREGNPGSDGPPGRDGATGIKGDRGETGPIGAPGAPGSPGAPGPVGPTG 1088
Query: 200 FSVDSNLLGSLSPKTGLPATSAMDEGLTSGHSD-------WSVGSEESKGYQEV--IQSI 250
D GS P P+ A GL G KG++ +Q +
Sbjct: 1089 KQGDRGESGSQGPLG--PSGPAGARGLNGPQGPRGDKGEAGEAGERGQKGHRGFTGLQGL 1146
Query: 251 VQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEP-----IREVEPMLP 305
PGT G AG + + G+ G GP G P E P P
Sbjct: 1147 PGPPGTAGDQGATGSAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP 1206
Query: 306 PSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPPP----------------ATAHRN 349
P S P P PG S A + + PE P P A N
Sbjct: 1207 PGQSGP---PGPPGPPGPGIDMS-AFAGLSQPEKGPDPMRYMRADQASSSVLQTADVEAN 1262
Query: 350 FH-LDPKLADILSPRLIRRGSKKRPARS 376
L+ ++ I SP G+KK PAR+
Sbjct: 1263 LKTLNNQIESIRSP----DGTKKNPART 1286
Score = 33.2 bits (74), Expect = 7.0
Identities = 72/291 (24%), Positives = 97/291 (32%), Gaps = 42/291 (14%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGT 111
G + + GS P G+P AG+ RG R + +GP + G + P G
Sbjct: 473 GPKGEIGSAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFP-------GQ 525
Query: 112 TGMWRPLSSSSAQTNHHGPGTEDSLGGWALVS-PETPPTPGALRRRRKVPPSGSGGSEFS 170
G+ P A PG GG P P PGA + +G G
Sbjct: 526 DGLAGP---KGAPGERGVPGLGGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 582
Query: 171 NGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGH 230
+G AGE R P PQ R ++G PK A E SG
Sbjct: 583 SGAAGEDGRP-GPPGPQGARG-----------QPGVMGFPGPK------GANGEPGKSG- 623
Query: 231 SDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFE 290
E+ G ++ + G G + AG A ++ P G PG
Sbjct: 624 -------EKGLGGAPGLRGLPGKDGETGAQGPNGPAGPAGERGEQGPPGPSGFQGLPGPP 676
Query: 291 GPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRA----QSERALP 337
G GE + + +P + LV R E PG S Q R LP
Sbjct: 677 GSPGEGGKPGDQGVPGEAGAAGLVGPRGERGFPGERGSSGPQGLQGSRGLP 727
>gb|AAA37002.1| (M76730) pro-alpha-1 type V collagen [Cricetulus longicaudatus]
Length = 1840
Score = 46.9 bits (109), Expect = 5e-04
Identities = 69/272 (25%), Positives = 95/272 (34%), Gaps = 34/272 (12%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCG--LGTTGMWR 116
G D PPG + GD RG L GP +L +G P PP A G G
Sbjct: 1050 GKDGPPGLRGFPGD--RG------LPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAG 1101
Query: 117 PLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGGSEFSNGEAG 175
P+ PG G P+ P L+ +P P+G G +G+ G
Sbjct: 1102 PIGIPGRPGPQGPPGPAGEKGVPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKG 1161
Query: 176 EAYRSLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLPATSAMDEGLTSGHSD 232
E + +P + + E+ P G + +G P G P +GL
Sbjct: 1162 E----IGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ-QGLFG---- 1212
Query: 233 WSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGP 292
G E S+G+ PG G V + G +K D + G PG GP
Sbjct: 1213 -QKGDEGSRGF----------PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1261
Query: 293 GGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G P + P P V ++ EP E G
Sbjct: 1262 SGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG 1293
>sp|P20909|CA1B_RAT COLLAGEN ALPHA 1(XI) CHAIN
pir||B31795 collagen alpha 1(XI) chain - rat (fragment)
Length = 482
Score = 46.9 bits (109), Expect = 5e-04
Identities = 67/270 (24%), Positives = 99/270 (35%), Gaps = 41/270 (15%)
Query: 147 PPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNL 206
PP P R P G+ GSE GE G + ++ P + + P+G L
Sbjct: 31 PPGPPGKRG-----PPGASGSEGGQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGL 85
Query: 207 LGSLSP--KTGLPATSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGT 256
G P + GLP + D GL D GS+ KG+ +I ++ PG
Sbjct: 86 RGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGD--PGSKGEKGHPGLI-GLIGPPGE 142
Query: 257 LGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQ 316
G D + G + P +G+ PG GP G P PP P
Sbjct: 143 QGEKGDRGLPG------TQGSPGAKGDGGIPGPAGPIGPPG-------PPGLPGP--AGP 187
Query: 317 RAEPEEPGATRSRAQSERALPEALP-PPATAHRNFHLDPKLADILSPRLIRRGSKKRPAR 375
+ G T + S P P PP + P ILSP+ RR ++ A
Sbjct: 188 KGNKGSSGPTGQKGDSGMPGPPGPPGPPGEV-----IQP--LPILSPKKTRRHTESIQAD 240
Query: 376 SSHQELRRDEGSQDQTGSLSRARPSSRHVR 405
+ L +G ++ GSL+ + H++
Sbjct: 241 AGDNILDYSDGMEEIFGSLNSLKQDIEHMK 270
>gb|AAG10075.1|AF294428_1 (AF294428) membrane virion glycoprotein 150 [murine herpesvirus 72]
Length = 483
Score = 46.5 bits (108), Expect = 7e-04
Identities = 86/347 (24%), Positives = 117/347 (32%), Gaps = 69/347 (19%)
Query: 224 EGLTSGHSDWSVGSEESKG--YQEVIQSIVQGPGTLGR---VVDDRIAGKAPKKKSLSDP 278
EG+TS + + S G + ++ P T+ R + K + S SDP
Sbjct: 40 EGITSREMEINATKAPSSGATFSLLVTLSNNNPTTIMRPPVAQNGESVHKDARSASASDP 99
Query: 279 SRRGELAGPGFEGPGGEP--------IREVEPMLP--------PSSSE--PILVEQRAEP 320
+ E PG E +P + E EP P PSS E P + AEP
Sbjct: 100 TT-SEPTSPGEEPTEADPKAAPSAGHVGETEPESPTPLPATPKPSSQEDNPTMTPPTAEP 158
Query: 321 EEPGATRSRAQSERALPEA---LPPP-----------ATAHRNFHLDPKL---------- 356
A S + PE+ LPP T +N +P L
Sbjct: 159 PTSNADVSTEHVDETEPESPTFLPPTPEPDTPTTPETTTPSQNQEDEPTLTTSSADAPAD 218
Query: 357 -ADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSL-SRARPSSRHVR-----HASV 409
+D P+ + +P S Q +D D G+ S P+S V
Sbjct: 219 TSDTSPPK--QEDDPVKPTESKPQAEPKDNSPSDVPGTADSTTDPASPTVELTPPTEPPT 276
Query: 410 PATFMPI--VVPEPPTSVGPPVAVPEPIGFPTRAHPTLQA-PSLEDVTKQYMLNLHSGEV 466
P T P VP+P P P P P P + A PS + T
Sbjct: 277 PETVSPADSPVPQPTAPAEPSKPEPTPPVDPPATEPNIPADPSTPESTPPTDPPAPQPTP 336
Query: 467 PAPV-------PVDMPCLP--LAAPPSAEAKPPEAARPADEPTPASK 504
PA PVD P P + A PS P A PA +PTP ++
Sbjct: 337 PAEPSNPEPTPPVDPPATPPNIPADPSTPESTPPADPPAPQPTPPAE 383
Score = 38.7 bits (88), Expect = 0.16
Identities = 87/400 (21%), Positives = 123/400 (30%), Gaps = 69/400 (17%)
Query: 119 SSSSAQTNHHGPGTEDSLGGWALVSPETP-PTPGALRRRRKVPPSGSGGSEFSNGEAGEA 177
+S + P S G PE+P P P + PS + E
Sbjct: 105 TSPGEEPTEADPKAAPSAGHVGETEPESPTPLPATPK------PSSQEDNPTMTPPTAEP 158
Query: 178 YRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEG-LTSGHSDWSVG 236
S +D + E PT +P+T P+ + DE LT+ +D
Sbjct: 159 PTSNADVSTEHVDETEPESPTFLPPTPEPDTPTTPETTTPSQNQEDEPTLTTSSADAPAD 218
Query: 237 -SEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGE 295
S+ S QE DD + K + K ++P PG +
Sbjct: 219 TSDTSPPKQE----------------DDPV--KPTESKPQAEPKDNSPSDVPGTADSTTD 260
Query: 296 PIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALPP--PATAHRNFHLD 353
P + PP+ EP E + + P + A +E + PE PP P N D
Sbjct: 261 PASPTVELTPPT--EPPTPETVSPADSP-VPQPTAPAEPSKPEPTPPVDPPATEPNIPAD 317
Query: 354 PKLADILSPRLIRRGSKKRPARSSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATF 413
P + P PA S+ E P+ A+ P
Sbjct: 318 PSTPESTPPTDPPAPQPTPPAEPSNPE------------------PTPPVDPPATPPNIP 359
Query: 414 MPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTL--QAPSLEDVTKQYMLNLHSGEVPAPVP 471
PE PP P P P+ P+ +AP+ E P P P
Sbjct: 360 ADPSTPESTPPADPPAPQPTPPAEPSTPEPSTPAKAPAPE---------------PTPPP 404
Query: 472 VDMPCLPLAAPPSAEAKPPEAARPADEPT--PASKCCSKP 509
P A PPS E P + T PAS + P
Sbjct: 405 SGPSMTPEATPPSTAGPGAETETPDGDTTTQPASPQTTAP 444
>dbj|BAA82043.1| (AB022046) alpha1 type II collagen [Cynops pyrrhogaster]
Length = 1418
Score = 46.5 bits (108), Expect = 7e-04
Identities = 74/259 (28%), Positives = 91/259 (34%), Gaps = 41/259 (15%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ GA +DG PPG P A RGQ GP+ GA+ EP
Sbjct: 505 KVGPTGAAGEDGRPGPPG-PQGA----RGQPGVMGFPGPK--------GANGEPGKGGEK 551
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGG 166
GL R LS +T GP G + PP P + P P G GG
Sbjct: 552 GLAGAPGLRGLSGKDGETGAQGPSGPAGPAGER--GEQGPPGPNGFQGLPGPPGPPGEGG 609
Query: 167 SEFSNGEAGEA-YRSLSDPIPQRHRAATSEEPTGFSVDSNLLG--SLSPKTGLPATSAMD 223
G GEA L P +R GF + G L GLP T D
Sbjct: 610 KPGDQGVPGEAGTPGLVGPRGER----------GFPGERGSSGPQGLQGPRGLPGTPGTD 659
Query: 224 EGLTSGHSDWSVGSEESKGYQ----EVIQSIVQGP-GTLGRVVDDRIAGKAPKKKSLSDP 278
+ G++ G Q E S + GP G G V + K P+ S D
Sbjct: 660 GPKGATGPSGPNGAQGPPGLQGMPGERGTSGISGPKGDRGDVGE-----KGPEGASGKDG 714
Query: 279 SR--RGELAGPGFEGPGGE 295
+R G + PG GP GE
Sbjct: 715 ARGLTGPIGPPGPSGPNGE 733
Score = 42.2 bits (97), Expect = 0.014
Identities = 69/290 (23%), Positives = 98/290 (33%), Gaps = 54/290 (18%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G +G+ PPG G+ R +SGP+ D G + P A G
Sbjct: 666 GPSGPNGAQGPPGLQGMPGE-----RGTSGISGPKGDRGDVG----EKGPEGASGKDGAR 716
Query: 113 GMWRPL-----SSSSAQTNHHGP-GTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGG 166
G+ P+ S + + GP G ++G A +P GA P G+ G
Sbjct: 717 GLTGPIGPPGPSGPNGEKGESGPPGPVGAVG--ARGAPGDRGESGAPGPAGFAGPPGADG 774
Query: 167 SEFSNGEAGEAYRS--LSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLPAT-- 219
GE GE+ + P PQ A + PTG + G+ P TG P
Sbjct: 775 QPGIKGEHGESGQKGDAGAPGPQGPSGAPGPQGPTGVNGPKGARGAQGPPGATGFPGAAG 834
Query: 220 ------------------SAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVV 261
SA +G D G + +Q PG G
Sbjct: 835 RVGPPGPNGNPGAPGPPGSAGKDGPKGARGD---GGPPGRAGDPGLQGPAGAPGEKGEPG 891
Query: 262 DDRIAGK---------APKKKSLSDPSRRGELAGPGFEGPGGEPIREVEP 302
+D G A ++ + P +RGE PG GP GEP ++ P
Sbjct: 892 EDGPNGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSP 941
Score = 40.6 bits (93), Expect = 0.041
Identities = 66/254 (25%), Positives = 81/254 (30%), Gaps = 36/254 (14%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEP--PVAAFCGLG 110
GA D G PG +AG G Q + G +G P P P A G
Sbjct: 750 GAPGDRGESGAPGPAGFAGPP--GADGQPGIKGEHGESGQKGDAGAPGPQGPSGAPGPQG 807
Query: 111 TTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP-TPGALRRRRKVPPSGSGGSEF 169
TG+ P + AQ PG G V P P PGA P GS G +
Sbjct: 808 PTGVNGPKGARGAQGP---PGATGFPGAAGRVGPPGPNGNPGA------PGPPGSAGKDG 858
Query: 170 SNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSG 229
G G+ P R + P G + G P P +GL
Sbjct: 859 PKGARGDGGP------PGRAGDPGLQGPAGAPGEKGEPGEDGPNG--PDGPPGPQGLAGQ 910
Query: 230 HSDWSV-GSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPG 288
+ G +G+ + PG G GK S D G + PG
Sbjct: 911 RGIVGLPGQRGERGFPGL-------PGPSGE------PGKQGSPGSAGDRGPPGPVGPPG 957
Query: 289 FEGPGGEPIREVEP 302
GP GEP RE P
Sbjct: 958 LTGPAGEPGREGNP 971
Score = 37.5 bits (85), Expect = 0.36
Identities = 65/298 (21%), Positives = 93/298 (30%), Gaps = 52/298 (17%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGI-------GADPEP-PV 103
G + + G P G+P AG+ RG R + +GP + G G D P P
Sbjct: 399 GPKGEIGPSGPQGAPGPAGEEGKRGARGEPGAAGPLGPNGERGAPGNRGFPGQDGLPGPK 458
Query: 104 AAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSG 163
A G G+ P ++ PG G PG + KV P+G
Sbjct: 459 GAPGERGVAGLGGPKGANGDPGRPGEPGLPGVRG--------LTGHPGDAGPQGKVGPTG 510
Query: 164 SGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMD 223
+ G + G G P G ++G PK
Sbjct: 511 AAGEDGRPGPPG---------------------PQGARGQPGVMGFPGPK---------- 539
Query: 224 EGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGE 283
+ + G E+ ++ + G G AG A ++ P G
Sbjct: 540 ----GANGEPGKGGEKGLAGAPGLRGLSGKDGETGAQGPSGPAGPAGERGEQGPPGPNGF 595
Query: 284 LAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPGATRSRAQSERALPEALP 341
PG GP GE + + +P + P LV R E PG S P LP
Sbjct: 596 QGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSSGPQGLQGPRGLP 653
>emb|CAA06511.1| (AJ005396) collagen alpha 1 (XI) [Rattus norvegicus]
Length = 473
Score = 46.5 bits (108), Expect = 7e-04
Identities = 66/269 (24%), Positives = 98/269 (35%), Gaps = 39/269 (14%)
Query: 147 PPTPGALRRRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNL 206
PP P R P G+ GSE GE G + ++ P + + P+G L
Sbjct: 22 PPGPPGKRG-----PPGASGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGL 76
Query: 207 LGSLSP--KTGLPATSAMD--------EGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGT 256
G P + GLP + D GL D GS+ KG+ +I ++ PG
Sbjct: 77 RGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGD--PGSKGEKGHPGLI-GLIGPPGE 133
Query: 257 LGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQ 316
G D + G + P +G+ PG GP G P PP P
Sbjct: 134 QGEKGDRGLPG------TQGSPGAKGDGGIPGPAGPIGPPG-------PPGLPGP--AGP 178
Query: 317 RAEPEEPGATRSRAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRGSKKRPARS 376
+ G T + S P P P + P ILSP+ RR ++ A +
Sbjct: 179 KGNKGSSGPTGQKGDSGMPGPPGPPGPPGEF----IQP--LPILSPKKTRRHTESIQADA 232
Query: 377 SHQELRRDEGSQDQTGSLSRARPSSRHVR 405
L +G ++ GSL+ + H++
Sbjct: 233 GDNILDYSDGMEEIFGSLNSLKQDIEHMK 261
>pir||S52985 cell wall protein - alfalfa
gb|AAD03487.1| (AF028841) proline-rich cell wall protein [Medicago sativa]
Length = 381
Score = 46.5 bits (108), Expect = 7e-04
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 410 PATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAP 469
P +P VVP PP V P V PI FP P + P + VT Y+ P P
Sbjct: 203 PHVPLPPVVPSPPPYVPSPPIVKPPIVFP----PHVPLPPVVPVTPPYVQPPPIVTPPTP 258
Query: 470 VP--VDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCS 507
P V P + PPS PP P PA + CS
Sbjct: 259 TPPIVTPPVVSPPTPPSETPCPPPPLVPYPPTPPAQQTCS 298
Score = 34.8 bits (78), Expect = 2.4
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 410 PATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAP 469
P P VP+PP P VP+P P P + P + VT Y VP P
Sbjct: 144 PPVVRPPYVPKPPVVPVTPPYVPKP---PVVRPPYVPKPPVVPVTPPY--------VPKP 192
Query: 470 VPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHV 517
P+ P P+ PP P + P P+P KP + HV
Sbjct: 193 -PIVKP--PIVFPPHVPLPPVVPSPPPYVPSPP---IVKPPIVFPPHV 234
Score = 33.2 bits (74), Expect = 7.0
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 413 FMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPTLQAPSLEDVTKQYMLNLHSGEVPAPVPV 472
+ P P+PPT PP+ P P+ + PT + P +H + P P
Sbjct: 27 YCPYPSPKPPTH-HPPIVKP-PVHKRRKYSPTPKPP------------VH--KPPRYPPK 70
Query: 473 DMPCLPLAAPPSAEAKPPEAARPADEPTP 501
PC PPS+ KPP +P P P
Sbjct: 71 PSPC----PPPSSTPKPPHVPKPPHHPKP 95
>emb|CAA28454.1| (X04758) pro- alpha (V)collagen (AA 1099) [Homo sapiens]
Length = 1099
Score = 46.1 bits (107), Expect = 0.001
Identities = 75/282 (26%), Positives = 98/282 (34%), Gaps = 50/282 (17%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ +GA +DG PPGS +GQ L GP +G DP P A
Sbjct: 186 KLGPLGAPGEDGRPGPPGSIG-----IKGQPGTMGLPGP------KGSNGDPGKPGEA-- 232
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALR--RRRKVPPSGSG 165
G G+ PG + G V P PP P LR R + PP +G
Sbjct: 233 --GNPGV---------------PGQRGAPGKDGKVGPYGPPGPPGLRGERGEQGPPGPTG 275
Query: 166 --GSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMD 223
G G GE + +P A P G + G TGLP +
Sbjct: 276 FQGHPGPPGPPGEGGKPGDQGVPGGPGAVGPLGPRGERGNPGERGE-PGITGLPG----E 330
Query: 224 EGLTSGHS-DWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRG 282
+G+ GH D GS G PG G + IAG K +G
Sbjct: 331 KGMAGGHGPDGPKGSPGPSG----TPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKG 386
Query: 283 ELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G +G GG P P+ PP + L+ ++ EP G
Sbjct: 387 AEGTAGNDGAGGLP----GPLGPPGPAG--LLGEKGEPGPRG 422
Score = 44.9 bits (104), Expect = 0.002
Identities = 75/297 (25%), Positives = 97/297 (32%), Gaps = 50/297 (16%)
Query: 53 GAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLGTT 112
G + + G P GSP G + G GP S G PP +A G
Sbjct: 5 GQRGETGPPGPVGSPGLPGAI--GTDGTPGPKGPTGSPGTSG------PPGSA----GPP 52
Query: 113 GMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVPPSGSGGSEFSNG 172
G P S+ Q N PG G P+ P P ++ P G G E G
Sbjct: 53 GSPGPQGSTGPQGNSGLPGDPGFKGE---AGPKGEPGPHGIQG-----PIGPPGEEGKRG 104
Query: 173 EAGEAYRSLSDPIPQRHRAATSEE----------PTGFSVDSNLLGSLSPK--------- 213
G+ +L P P R A P G + +GS PK
Sbjct: 105 PRGDP-GTLGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRP 163
Query: 214 --TGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPK 271
GLP + + +G + G PG++G G
Sbjct: 164 GEPGLPGARGLTGNPGVQGPEGKLGPLGAPGED----GRPGPPGSIGIKGQPGTMGLPGP 219
Query: 272 KKSLSDPSRRGELAGPGFEGPGGEPIRE--VEPMLPPSSSEPILVEQRAEPEEPGAT 326
K S DP + GE PG G G P ++ V P PP P L +R E PG T
Sbjct: 220 KGSNGDPGKPGEAGNPGVPGQRGAPGKDGKVGPYGPP--GPPGLRGERGEQGPPGPT 274
Score = 36.4 bits (82), Expect = 0.80
Identities = 91/378 (24%), Positives = 121/378 (31%), Gaps = 67/378 (17%)
Query: 52 MGAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLG 110
+G +G P G P G V RG G + ++G PP A G
Sbjct: 532 LGEPGKEGPPGPRGDPGSHGRVGVRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPA----G 587
Query: 111 TTGMWRPLSSSSAQTNHHG-------PGTEDSLGGWALVSPETPPTP-------GALRRR 156
TTG R + Q G GT +G + PP P G +
Sbjct: 588 TTGQ-RGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEP 646
Query: 157 RKVPPSGSGGSEFSNGEAGEAYRSLSDP----IPQRHRAATSEEPTGFSVDSNLLG---S 209
P+G+ G+ +G GE DP +P A + P G D+ G S
Sbjct: 647 GPEGPAGNDGTPGRDGAVGER-GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGS 705
Query: 210 LSP--------KTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEV--IQSIVQGPGTLGR 259
P K GLP G H D G KG++ +Q + PG G
Sbjct: 706 RGPIGHLGRAGKRGLPGPQG-PRGDKGDHGDR--GDRGQKGHRGFTGLQGLPGPPGPNGE 762
Query: 260 VVDDRIAGK----------APKKKS--------LSDPSRRGELAGPGFEGPGGEPIREVE 301
I G P K L P RG + G EGP GEP
Sbjct: 763 QGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPLGPPGVRGSVGEAGPEGPPGEP-GPPG 821
Query: 302 PMLPPSSSEPILVEQRAEPEE--PGATRSRAQSERALPEALPPPATAHRNF-HLDPKLAD 358
P PP L + +E P + + A + H L ++
Sbjct: 822 PPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIET 881
Query: 359 ILSPRLIRRGSKKRPARS 376
+ SP GSKK PAR+
Sbjct: 882 MRSP----DGSKKHPART 895
Score = 32.8 bits (73), Expect = 9.1
Identities = 69/301 (22%), Positives = 94/301 (30%), Gaps = 45/301 (14%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-------TRGQRSQEELSGPESSLTDEGIGADPEP--PV 103
G G PPG G+ +G R G E + ++G G P P P
Sbjct: 347 GPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGAGGLPGPLGPP 406
Query: 104 AAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP----TPGALRRRRKV 159
LG G P + PG+ G V P PG +
Sbjct: 407 GPAGLLGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGSDGQPGVKGEPGEP 466
Query: 160 PPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEP---TGFSVDSNLLGSLSPKTGL 216
G GS G AG + +P ++ P TGF + +G P G
Sbjct: 467 GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGP-AGA 525
Query: 217 PATSAM-----DEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRI------ 265
P + EG D GS G + GPG G +D
Sbjct: 526 PGPAGPLGEPGKEGPPGPRGD--PGSHGRVGVRGPAGP-PGGPGDKGDPGEDGQPGPDGP 582
Query: 266 ---AGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIR-----------EVEPMLPPSSSEP 311
AG ++ + P +RGE PG GP G P + P+ PP S+ P
Sbjct: 583 PGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGP 642
Query: 312 I 312
+
Sbjct: 643 V 643
>ref|NP_000384.1| collagen, type V, alpha 2; Collagen V, alpha-2 polypeptide [Homo
sapiens]
sp|P05997|CA25_HUMAN COLLAGEN ALPHA 2(V) CHAIN PRECURSOR
pir||CGHU2V collagen alpha 2(V) chain precursor - human
emb|CAA75002.1| (Y14690) procollagen alpha 2(V) [Homo sapiens]
Length = 1496
Score = 46.1 bits (107), Expect = 0.001
Identities = 75/282 (26%), Positives = 98/282 (34%), Gaps = 50/282 (17%)
Query: 48 KIQRMGAQQDDGSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 107
K+ +GA +DG PPGS +GQ L GP +G DP P A
Sbjct: 583 KLGPLGAPGEDGRPGPPGSIG-----IKGQPGTMGLPGP------KGSNGDPGKPGEA-- 629
Query: 108 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALR--RRRKVPPSGSG 165
G G+ PG + G V P PP P LR R + PP +G
Sbjct: 630 --GNPGV---------------PGQRGAPGKDGKVGPYGPPGPPGLRGERGEQGPPGPTG 672
Query: 166 --GSEFSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMD 223
G G GE + +P A P G + G TGLP +
Sbjct: 673 FQGHPGPPGPPGEGGKPGDQGVPGGPGAVGPLGPRGERGNPGERGE-PGITGLPG----E 727
Query: 224 EGLTSGHS-DWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRG 282
+G+ GH D GS G PG G + IAG K +G
Sbjct: 728 KGMAGGHGPDGPKGSPGPSG----TPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKG 783
Query: 283 ELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G +G GG P P+ PP + L+ ++ EP G
Sbjct: 784 AEGTAGNDGAGGLP----GPLGPPGPAG--LLGEKGEPGPRG 819
Score = 45.3 bits (105), Expect = 0.002
Identities = 80/315 (25%), Positives = 103/315 (32%), Gaps = 51/315 (16%)
Query: 52 MGAQQDDGSDAPPGSPDWAGDV----------TRGQRSQEELSGPESSLTDEG-IGAD-- 98
MG GS PG+P G+ +GQR + GP S G IG D
Sbjct: 368 MGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGT 427
Query: 99 --PEPPVAAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPT--PGALR 154
P+ P + G G P S Q + GP L G E P PG
Sbjct: 428 PGPKGPTGSPGTSGPPGSAGPPGSPGPQGST-GPQGNSGLPGDPGFKGEAGPKGEPGPHG 486
Query: 155 RRRKVPPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEE----------PTGFSVDS 204
+ + P G G G+ G +L P P R A P G +
Sbjct: 487 IQGPIGPPGEEGKRGPRGDPG----TLGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGER 542
Query: 205 NLLGSLSPK-----------TGLPATSAMDEGLTSGHSDWSVGSEESKGYQEVIQSIVQG 253
+GS PK GLP + + +G + G
Sbjct: 543 GPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGED----GRPGP 598
Query: 254 PGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIRE--VEPMLPPSSSEP 311
PG++G G K S DP + GE PG G G P ++ V P PP P
Sbjct: 599 PGSIGIKGQPGTMGLPGPKGSNGDPGKPGEAGNPGVPGQRGAPGKDGKVGPYGPP--GPP 656
Query: 312 ILVEQRAEPEEPGAT 326
L +R E PG T
Sbjct: 657 GLRGERGEQGPPGPT 671
Score = 36.4 bits (82), Expect = 0.80
Identities = 91/378 (24%), Positives = 121/378 (31%), Gaps = 67/378 (17%)
Query: 52 MGAQQDDGSDAPPGSPDWAGDV-TRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCGLG 110
+G +G P G P G V RG G + ++G PP A G
Sbjct: 929 LGEPGKEGPPGPRGDPGSHGRVGVRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPA----G 984
Query: 111 TTGMWRPLSSSSAQTNHHG-------PGTEDSLGGWALVSPETPPTP-------GALRRR 156
TTG R + Q G GT +G + PP P G +
Sbjct: 985 TTGQ-RGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEP 1043
Query: 157 RKVPPSGSGGSEFSNGEAGEAYRSLSDP----IPQRHRAATSEEPTGFSVDSNLLG---S 209
P+G+ G+ +G GE DP +P A + P G D+ G S
Sbjct: 1044 GPEGPAGNDGTPGRDGAVGER-GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGS 1102
Query: 210 LSP--------KTGLPATSAMDEGLTSGHSDWSVGSEESKGYQEV--IQSIVQGPGTLGR 259
P K GLP G H D G KG++ +Q + PG G
Sbjct: 1103 RGPIGHLGRAGKRGLPGPQG-PRGDKGDHGDR--GDRGQKGHRGFTGLQGLPGPPGPNGE 1159
Query: 260 VVDDRIAGK----------APKKKS--------LSDPSRRGELAGPGFEGPGGEPIREVE 301
I G P K L P RG + G EGP GEP
Sbjct: 1160 QGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPLGPPGVRGSVGEAGPEGPPGEP-GPPG 1218
Query: 302 PMLPPSSSEPILVEQRAEPEE--PGATRSRAQSERALPEALPPPATAHRNF-HLDPKLAD 358
P PP L + +E P + + A + H L ++
Sbjct: 1219 PPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDDKNKTDPGVHATLKSLSSQIET 1278
Query: 359 ILSPRLIRRGSKKRPARS 376
+ SP GSKK PAR+
Sbjct: 1279 MRSP----DGSKKHPART 1292
Score = 32.8 bits (73), Expect = 9.1
Identities = 69/301 (22%), Positives = 94/301 (30%), Gaps = 45/301 (14%)
Query: 53 GAQQDDGSDAPPGSPDWAGDV-------TRGQRSQEELSGPESSLTDEGIGADPEP--PV 103
G G PPG G+ +G R G E + ++G G P P P
Sbjct: 744 GPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGAGGLPGPLGPP 803
Query: 104 AAFCGLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPP----TPGALRRRRKV 159
LG G P + PG+ G V P PG +
Sbjct: 804 GPAGLLGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGSDGQPGVKGEPGEP 863
Query: 160 PPSGSGGSEFSNGEAGEAYRSLSDPIPQRHRAATSEEP---TGFSVDSNLLGSLSPKTGL 216
G GS G AG + +P ++ P TGF + +G P G
Sbjct: 864 GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGP-AGA 922
Query: 217 PATSAM-----DEGLTSGHSDWSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRI------ 265
P + EG D GS G + GPG G +D
Sbjct: 923 PGPAGPLGEPGKEGPPGPRGD--PGSHGRVGVRGPAGP-PGGPGDKGDPGEDGQPGPDGP 979
Query: 266 ---AGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIR-----------EVEPMLPPSSSEP 311
AG ++ + P +RGE PG GP G P + P+ PP S+ P
Sbjct: 980 PGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGP 1039
Query: 312 I 312
+
Sbjct: 1040 V 1040
>gb|AAB94077.2| (AF111796) adhesin [Bordetella bronchiseptica]
Length = 3634
Score = 45.7 bits (106), Expect = 0.001
Identities = 63/252 (25%), Positives = 89/252 (35%), Gaps = 32/252 (12%)
Query: 265 IAGKAPKKKSLSDPSRRGELAGPGFEGPGGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
+AGK+PKKK+ P E P + G P R P PP+S +PI P
Sbjct: 3297 VAGKSPKKKNQVRPV---ETPTPTPDVVDGPPSR---PATPPASPQPIRATVEISSPPPT 3350
Query: 325 ATRS-----RAQSERALPEALPPPATAHRNFHLDPKLADILSPRLIRRG----SKKRPAR 375
+ R + E A P LPP + + P ++ ++ R ++ P R
Sbjct: 3351 SVAKVEVVPRPKVETAQP--LPPRPVPAKAVPVVPPKVEVAKVEVVPRPKVETAQPLPPR 3408
Query: 376 SSHQELRRDEGSQDQTGSLSRARPSSRHVRHASVPATFMPIVVPEPPTSVG----PPVAV 431
E Q Q + +P P T P+ P P V P VA
Sbjct: 3409 PVVAEKVTTPAVQPQLAKVETVQPVK--------PETAKPLPKPLPVAKVQEAPPPVVAT 3460
Query: 432 PEPIGFPTRAHPTLQAPSLE--DVTKQYMLNLHSGEVPAPVPVDMPCLPLAAPPSAEAKP 489
+P+ P +A P E T + + PAPV P AP A A
Sbjct: 3461 TQPLP-PVKAQQATPGPVAEAGKATVTTVQVQSAPAKPAPVVKQAQPAPAPAPAPAPAPK 3519
Query: 490 PEAARPADEPTP 501
P+ A+ P P
Sbjct: 3520 PKPKPKAERPKP 3531
Score = 32.8 bits (73), Expect = 9.1
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 23/128 (17%)
Query: 405 RHASVPATFMPI-----VVPEPPTSVGPPVAVPEPI-----GFPTRAHPTLQAPSLE--- 451
R A+ PA+ PI + PPTSV VP P P R P P +
Sbjct: 3327 RPATPPASPQPIRATVEISSPPPTSVAKVEVVPRPKVETAQPLPPRPVPAKAVPVVPPKV 3386
Query: 452 DVTKQYMLNLHSGEV-----PAPVPVDMPCLPLAAPPSAEAKP-----PEAARPADEPTP 501
+V K ++ E P PV + P P A+ + PE A+P +P P
Sbjct: 3387 EVAKVEVVPRPKVETAQPLPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETAKPLPKPLP 3446
Query: 502 ASKCCSKP 509
+K P
Sbjct: 3447 VAKVQEAP 3454
>pir||CGHU1V collagen alpha 1(V) chain precursor - human
gb|AAA59993.1| (M76729) pro-alpha-1 type V collagen [Homo sapiens]
Length = 1838
Score = 45.7 bits (106), Expect = 0.001
Identities = 68/272 (25%), Positives = 94/272 (34%), Gaps = 34/272 (12%)
Query: 59 GSDAPPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFCG--LGTTGMWR 116
G D PPG + GD RG L GP +L +G P PP A G G
Sbjct: 1048 GKDGPPGLRGFPGD--RG------LPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAG 1099
Query: 117 PLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTPGALRRRRKVP-PSGSGGSEFSNGEAG 175
P+ PG G P+ P L+ +P P+G G +G+ G
Sbjct: 1100 PIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKG 1159
Query: 176 EAYRSLSDPIPQRHRAATSEE-PTGFSVDSNLLGSLSPK--TGLPATSAMDEGLTSGHSD 232
E + +P + + E+ P G + +G P G P +GL
Sbjct: 1160 E----IGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ-QGLFG---- 1210
Query: 233 WSVGSEESKGYQEVIQSIVQGPGTLGRVVDDRIAGKAPKKKSLSDPSRRGELAGPGFEGP 292
G E +G+ PG G V + G +K D + G PG GP
Sbjct: 1211 -QKGDEGPRGF----------PGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1259
Query: 293 GGEPIREVEPMLPPSSSEPILVEQRAEPEEPG 324
G P + P P V ++ EP E G
Sbjct: 1260 SGAPGADGPQGPPGGIGNPGAVGEKGEPGEAG 1291
Database: nr
Number of letters in database: 189,012,571
Number of sequences in database: 598,029
Lambda K H
0.309 0.130 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230348895
Number of Sequences: 598029
Number of extensions: 11754058
Number of successful extensions: 57328
Number of sequences better than 10.0: 1288
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1299
Number of HSP's that attempted gapping in prelim test: 45234
Number of HSP's gapped (non-prelim): 7291
length of query: 517
length of database: 189,012,571
effective HSP length: 59
effective length of query: 458
effective length of database: 153,728,860
effective search space: 70407817880
effective search space used: 70407817880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 73 (32.8 bits)