Score E
Sequences producing significant alignments: (bits) Value
ref|NM_013253.1| Homo sapiens dickkopf (Xenopus laevis) hom... 856 0.0
dbj|AB034203.1|AB034203 Homo sapiens REIC/Dkk-3 mRNA, compl... 856 0.0
gb|AF177396.1|AF177396 Homo sapiens dickkopf-3 (DKK-3) mRNA... 856 0.0
gb|AF052161.1|AF052161 Homo sapiens clone 24429 mRNA sequence 856 0.0
ref|NM_006394.1| Homo sapiens regulated in glioma (RIG), mRNA 799 0.0
gb|U32331.1|HSU32331 Homo sapiens RIG mRNA, complete cds 799 0.0
ref|NM_015881.1| Homo sapiens dickkopf (Xenopus laevis) hom... 789 0.0
gb|AF034208.1|AF034208 Homo sapiens RIG-like 7-1 mRNA, comp... 789 0.0
ref|NM_015882.1| Homo sapiens RIG-like 5-6 (LOC51048), mRNA 216 9e-54
gb|AF034209.1|AF034209 Homo sapiens RIG-like 5-6 mRNA, comp... 216 9e-54
ref|NM_015814.1| Mus musculus dickkopf homolog 3 (Xenopus l... 56 2e-05
emb|AJ243964.1|MMU243964 Mus musculus mRNA for dickkopf-3 (... 56 2e-05
gb|AF177400.1|AF177400 Mus musculus Dkk-3 protein (Dkk-3) m... 56 2e-05
gb|AF245040.1|AF245040 Rattus norvegicus substrate binding ... 46 0.019
emb|Z94721.1|HS167A14 Human DNA sequence from PAC 167A14 on... 42 0.30
gb|AC069451.11|AC069451 Mus musculus BAC MGS3-404F4 (Genom... 40 1.2
gb|AC024164.4|AC024164 Homo sapiens chromosome 3 clone RP11... 40 1.2
gb|AF289077.1|AF289077 Homo sapiens chromosome 8 clone CTD-... 40 1.2
emb|AL133418.4|AL133418 Human DNA sequence from clone RP5-8... 40 1.2
gb|AC007585.15|AC007585 Mus musculus BAC GSMB-250J8 (Genom... 40 1.2
gb|AF172324.1|AF172324 Escherichia coli GalF (galF) gene, p... 40 1.2
gb|AC005784.1|AC005784 Homo sapiens chromosome 19, cosmid R... 40 1.2
gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsi... 40 1.2
gb|AF052208.1|AF052208 Streptococcus pneumoniae competence ... 40 1.2
emb|Z99281.1|CEY57G11C Caenorhabditis elegans cosmid Y57G11... 40 1.2
gb|AC002081.1|AC002081 Homo sapiens BAC clone CTA-331C24 fr... 40 1.2
emb|AL132904.2|CEY111B2A Caenorhabditis elegans cosmid Y111... 38 4.7
gb|AC007012.1|AC007012 Homo sapiens chromosome 16, clone 18... 38 4.7
gb|M94286.1|TRBKPGEN Trypanosoma brucei brucei kinetoplast ... 38 4.7
>ref|NM_013253.1| Homo sapiens dickkopf (Xenopus laevis) homolog 3 (DKK3), mRNA
Length = 2479
Score = 856 bits (432), Expect = 0.0
Identities = 477/486 (98%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 121 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 2389
Query: 181 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 2329
Query: 241 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 2269
Query: 301 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 2209
Query: 361 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 2149
Query: 421 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 2089
Query: 481 -ngtcatataaccttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 539
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 cagtcatatacctttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 2029
Query: 540 -tgtcntc-ttagaaggacggctgccccacactgtgagaaacactgctgttcctaac-gt 596
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 2028 ttgtcttcattagaaggacggctgccccacactgtgag-aacactgctgttcctaacagt 1970
Query: 597 agttta 602
||||||
Sbjct: 1969 agttta 1964
>dbj|AB034203.1|AB034203 Homo sapiens REIC/Dkk-3 mRNA, complete cds
Length = 2608
Score = 856 bits (432), Expect = 0.0
Identities = 477/486 (98%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 121 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 2549
Query: 181 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2548 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 2489
Query: 241 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 2429
Query: 301 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 2369
Query: 361 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2368 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 2309
Query: 421 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2308 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 2249
Query: 481 -ngtcatataaccttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 539
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 cagtcatatacctttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 2189
Query: 540 -tgtcntc-ttagaaggacggctgccccacactgtgagaaacactgctgttcctaac-gt 596
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 2188 ttgtcttcattagaaggacggctgccccacactgtgag-aacactgctgttcctaacagt 2130
Query: 597 agttta 602
||||||
Sbjct: 2129 agttta 2124
>gb|AF177396.1|AF177396 Homo sapiens dickkopf-3 (DKK-3) mRNA, complete cds
Length = 2479
Score = 856 bits (432), Expect = 0.0
Identities = 477/486 (98%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 121 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 2389
Query: 181 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 2329
Query: 241 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 2269
Query: 301 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 2209
Query: 361 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 2149
Query: 421 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 2089
Query: 481 -ngtcatataaccttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 539
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 cagtcatatacctttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 2029
Query: 540 -tgtcntc-ttagaaggacggctgccccacactgtgagaaacactgctgttcctaac-gt 596
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 2028 ttgtcttcattagaaggacggctgccccacactgtgag-aacactgctgttcctaacagt 1970
Query: 597 agttta 602
||||||
Sbjct: 1969 agttta 1964
>gb|AF052161.1|AF052161 Homo sapiens clone 24429 mRNA sequence
Length = 1370
Score = 856 bits (432), Expect = 0.0
Identities = 477/486 (98%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 121 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 agcagttgaagtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaa 1275
Query: 181 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 aactcaaagaaagcatgcttatacaatcatgtgcaactttaaactttaagaactctggat 1215
Query: 241 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 gaatacatggtggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagag 1155
Query: 301 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ttcagtgttcgcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattt 1095
Query: 361 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tctccacgtggttgataattgtcttcagttgctgctaagtgattttgcaaatttcattta 1035
Query: 421 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 taatcctcgccctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct 975
Query: 481 -ngtcatataaccttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 539
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 cagtcatatacctttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca 915
Query: 540 -tgtcntc-ttagaaggacggctgccccacactgtgagaaacactgctgttcctaac-gt 596
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 914 ttgtcttcattagaaggacggctgccccacactgtgag-aacactgctgttcctaacagt 856
Query: 597 agttta 602
||||||
Sbjct: 855 agttta 850
>ref|NM_006394.1| Homo sapiens regulated in glioma (RIG), mRNA
Length = 2569
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Plus
Query: 13 ctatggaagatttttaatacaggttgtttctattttactttttctggctgaaaggatttt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 ctatggaagatttttaatacaggttgtttctattttactttttctggctgaaaggatttt 2225
Query: 73 acatttattcaaagtcaaaagggaaaagaaatccaagaactacagaagagcagttgaagt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 acatttattcaaagtcaaaagggaaaagaaatccaagaactacagaagagcagttgaagt 2285
Query: 133 gatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaagaaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaagaaa 2345
Query: 193 gcatgcttatacaatcatgtgcaactttaaactttaagaactctggatgaatacatggtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 gcatgcttatacaatcatgtgcaactttaaactttaagaactctggatgaatacatggtg 2405
Query: 253 gcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagagttcagtgttcgc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 gcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagagttcagtgttcgc 2465
Query: 313 agtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtggt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 agtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtggt 2525
Query: 373 tgataattgtcttcagttgctgctaagtgattttgcaaatttc 415
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tgataattgtcttcagttgctgctaagtgattttgcaaatttc 2568
>gb|U32331.1|HSU32331 Homo sapiens RIG mRNA, complete cds
Length = 2569
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Plus
Query: 13 ctatggaagatttttaatacaggttgtttctattttactttttctggctgaaaggatttt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 ctatggaagatttttaatacaggttgtttctattttactttttctggctgaaaggatttt 2225
Query: 73 acatttattcaaagtcaaaagggaaaagaaatccaagaactacagaagagcagttgaagt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 acatttattcaaagtcaaaagggaaaagaaatccaagaactacagaagagcagttgaagt 2285
Query: 133 gatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaagaaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaagaaa 2345
Query: 193 gcatgcttatacaatcatgtgcaactttaaactttaagaactctggatgaatacatggtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 gcatgcttatacaatcatgtgcaactttaaactttaagaactctggatgaatacatggtg 2405
Query: 253 gcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagagttcagtgttcgc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 gcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagagttcagtgttcgc 2465
Query: 313 agtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtggt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 agtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtggt 2525
Query: 373 tgataattgtcttcagttgctgctaagtgattttgcaaatttc 415
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tgataattgtcttcagttgctgctaagtgattttgcaaatttc 2568
>ref|NM_015881.1| Homo sapiens dickkopf (Xenopus laevis) homolog 3 (DKK3), mRNA
Length = 2452
Score = 789 bits (398), Expect = 0.0
Identities = 462/476 (97%), Gaps = 6/476 (1%)
Strand = Plus / Minus
Query: 131 gtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaaga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 gtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaaga 2393
Query: 191 aagcatgcttatacaatcatgtgcaactttaaactttaagaactctggatgaatacatgg 250
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2392 aagcatgcttatacaatcatgtgcaactttaaaccttaagaactctggatgaatacatgg 2333
Query: 251 tggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagagttcagtgttc 310
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2332 tggcaacagtccatgacacctgaaaacatcatctgtggagtggcgtagagttcagtgttc 2273
Query: 311 gcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 gcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtg 2213
Query: 371 gttgataattgtcttcagttgctgctaagtgattttgcaaatttcatttataatcctcgc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 gttgataattgtcttcagttgctgctaagtgattttgcaaatttcatttataatcctcgc 2153
Query: 431 cctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct-ngtcatata 489
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 2152 cctacaattacctaagtactgtttctgcaggttaacctgtatcgtacgctcagtcatata 2093
Query: 490 accttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca-tgtcntc-t 547
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |
Sbjct: 2092 cctttcaaagttactaatgcaactgccaaaga-ggacagtgtcaatatcattgtcttcat 2034
Query: 548 tagaaggacggctgccccacactgtgagaaacactgctgttcctaac-gtagttta 602
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 2033 tagaaggacggctgccccacactgtgag-aacactgctgttcctaacagtagttta 1979
>gb|AF034208.1|AF034208 Homo sapiens RIG-like 7-1 mRNA, complete cds
Length = 2452
Score = 789 bits (398), Expect = 0.0
Identities = 462/476 (97%), Gaps = 6/476 (1%)
Strand = Plus / Minus
Query: 131 gtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaaga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 gtgatttatgcttgatttctaaatgcaacttatgtttatacataatttaaaactcaaaga 2393
Query: 191 aagcatgcttatacaatcatgtgcaactttaaactttaagaactctggatgaatacatgg 250
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2392 aagcatgcttatacaatcatgtgcaactttaaaccttaagaactctggatgaatacatgg 2333
Query: 251 tggcaacagtccatgacacctgaaaacatcatttgtggagtggcgtagagttcagtgttc 310
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2332 tggcaacagtccatgacacctgaaaacatcatctgtggagtggcgtagagttcagtgttc 2273
Query: 311 gcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 gcagtcgcatattacaaccatgtttcacacagccctgctcggtttgattttctccacgtg 2213
Query: 371 gttgataattgtcttcagttgctgctaagtgattttgcaaatttcatttataatcctcgc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 gttgataattgtcttcagttgctgctaagtgattttgcaaatttcatttataatcctcgc 2153
Query: 431 cctacaattacctaagtactgtttctgcaggttaacctgtatgctacgct-ngtcatata 489
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 2152 cctacaattacctaagtactgtttctgcaggttaacctgtatcgtacgctcagtcatata 2093
Query: 490 accttcaaagttactaatgcaactgccaaagagggacagtgtcaatatca-tgtcntc-t 547
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |
Sbjct: 2092 cctttcaaagttactaatgcaactgccaaaga-ggacagtgtcaatatcattgtcttcat 2034
Query: 548 tagaaggacggctgccccacactgtgagaaacactgctgttcctaac-gtagttta 602
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 2033 tagaaggacggctgccccacactgtgag-aacactgctgttcctaacagtagttta 1979
>ref|NM_015882.1| Homo sapiens RIG-like 5-6 (LOC51048), mRNA
Length = 1519
Score = 216 bits (109), Expect = 9e-54
Identities = 208/226 (92%), Gaps = 13/226 (5%)
Strand = Plus / Plus
Query: 384 ttcagttgctg-ctaagt-gattttgcaaatttcatttat-aatcctcgccctacaatta 440
||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||| ||||
Sbjct: 103 ttcagttgctggctaagttgattttgcaaatttcatttatcaaacctcggcctacgatta 162
Query: 441 cctaagtactgtttctgcaggttaacctgtatgctacgctn-gtcatataaccttcaaag 499
||||||||| |||||||||||||||| ||||| ||||||| ||||||| |||||||||
Sbjct: 163 cctaagtac-gtttctgcaggttaac-tgtat-ctacgctcagtcatat--ccttcaaag 217
Query: 500 ttactaatgcaactgccaaagagggacagtgtcaatatca-tgtcntc-ttagaaggacg 557
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 218 ttactaatgcaactgccaaagagggacagtgtcaatatcattgtcttcattagaaggacg 277
Query: 558 gctgccccacactgtgagaaacactgctgttcctaac-gtagttta 602
|||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 278 gctgccccacactgtgag-aacactgctgttcctaacagtagttta 322
Score = 99.6 bits (50), Expect = 2e-18
Identities = 57/58 (98%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 336 cacacagccctgctcggtttgattttctccacgtggttgataattgtcttcagttgct 393
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 cacacagccctgctcggtttgattttctccacgtggttgat-attgtcttcagttgct 59
>gb|AF034209.1|AF034209 Homo sapiens RIG-like 5-6 mRNA, complete cds
Length = 1519
Score = 216 bits (109), Expect = 9e-54
Identities = 208/226 (92%), Gaps = 13/226 (5%)
Strand = Plus / Plus
Query: 384 ttcagttgctg-ctaagt-gattttgcaaatttcatttat-aatcctcgccctacaatta 440
||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||| ||||
Sbjct: 103 ttcagttgctggctaagttgattttgcaaatttcatttatcaaacctcggcctacgatta 162
Query: 441 cctaagtactgtttctgcaggttaacctgtatgctacgctn-gtcatataaccttcaaag 499
||||||||| |||||||||||||||| ||||| ||||||| ||||||| |||||||||
Sbjct: 163 cctaagtac-gtttctgcaggttaac-tgtat-ctacgctcagtcatat--ccttcaaag 217
Query: 500 ttactaatgcaactgccaaagagggacagtgtcaatatca-tgtcntc-ttagaaggacg 557
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 218 ttactaatgcaactgccaaagagggacagtgtcaatatcattgtcttcattagaaggacg 277
Query: 558 gctgccccacactgtgagaaacactgctgttcctaac-gtagttta 602
|||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 278 gctgccccacactgtgag-aacactgctgttcctaacagtagttta 322
Score = 99.6 bits (50), Expect = 2e-18
Identities = 57/58 (98%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 336 cacacagccctgctcggtttgattttctccacgtggttgataattgtcttcagttgct 393
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 cacacagccctgctcggtttgattttctccacgtggttgat-attgtcttcagttgct 59
>ref|NM_015814.1| Mus musculus dickkopf homolog 3 (Xenopus laevis) (Dkk3), mRNA
Length = 2380
Score = 56.0 bits (28), Expect = 2e-05
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 393 tgctaagtgattttgcaaatttcatttataatcctcgccctacaatta 440
||||||| || ||||||||||||||| | |||||| ||||||||||||
Sbjct: 2032 tgctaagcgactttgcaaatttcattcacaatcctagccctacaatta 1985
Score = 54.0 bits (27), Expect = 8e-05
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 172 ataatttaaaactcaa-agaaag-catgcttatacaatcatgtgcaactttaaactttaa 229
||||||||||||||| |||||| ||||||||||||| ||||||||||| || |||||
Sbjct: 2257 ataatttaaaactcaggagaaaggcatgcttatacaaatgtgtgcaactttcaattttaa 2198
Query: 230 gaactctggat 240
||||||||||
Sbjct: 2197 taactctggat 2187
>emb|AJ243964.1|MMU243964 Mus musculus mRNA for dickkopf-3 (dkk-3 gene)
Length = 2380
Score = 56.0 bits (28), Expect = 2e-05
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 393 tgctaagtgattttgcaaatttcatttataatcctcgccctacaatta 440
||||||| || ||||||||||||||| | |||||| ||||||||||||
Sbjct: 2032 tgctaagcgactttgcaaatttcattcacaatcctagccctacaatta 1985
Score = 54.0 bits (27), Expect = 8e-05
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 172 ataatttaaaactcaa-agaaag-catgcttatacaatcatgtgcaactttaaactttaa 229
||||||||||||||| |||||| ||||||||||||| ||||||||||| || |||||
Sbjct: 2257 ataatttaaaactcaggagaaaggcatgcttatacaaatgtgtgcaactttcaattttaa 2198
Query: 230 gaactctggat 240
||||||||||
Sbjct: 2197 taactctggat 2187
>gb|AF177400.1|AF177400 Mus musculus Dkk-3 protein (Dkk-3) mRNA, complete cds
Length = 2364
Score = 56.0 bits (28), Expect = 2e-05
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 393 tgctaagtgattttgcaaatttcatttataatcctcgccctacaatta 440
||||||| || ||||||||||||||| | |||||| ||||||||||||
Sbjct: 2016 tgctaagcgactttgcaaatttcattcacaatcctagccctacaatta 1969
Score = 54.0 bits (27), Expect = 8e-05
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 172 ataatttaaaactcaa-agaaag-catgcttatacaatcatgtgcaactttaaactttaa 229
||||||||||||||| |||||| ||||||||||||| ||||||||||| || |||||
Sbjct: 2241 ataatttaaaactcaggagaaaggcatgcttatacaaatgtgtgcaactttcaattttaa 2182
Query: 230 gaactctggat 240
||||||||||
Sbjct: 2181 taactctggat 2171
>gb|AF245040.1|AF245040 Rattus norvegicus substrate binding subunit of type II 5'-deiodinase
D2p29 mRNA, complete cds
Length = 3262
Score = 46.1 bits (23), Expect = 0.019
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 404 tttgcaaatttcatttataatcctcgccctacaattacc 442
||||||| ||||||| | |||||| ||||||||||||||
Sbjct: 1910 tttgcaagtttcattcacaatcctggccctacaattacc 1872
Score = 40.1 bits (20), Expect = 1.2
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 197 gcttatacaatcatgtgcaactttaaactttaagaactct 236
|||||||||| |||||||||||||| ||||| ||||||
Sbjct: 2117 gcttatacaactgtgtgcaactttaaattttaataactct 2078
>emb|Z94721.1|HS167A14 Human DNA sequence from PAC 167A14 on chromosome 6q27. Contains ESTs, CpG
island and STSs
Length = 132790
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 82 caaagtcaaaagggaaaagaa 102
|||||||||||||||||||||
Sbjct: 113364 caaagtcaaaagggaaaagaa 113344
>gb|AC069451.11|AC069451 Mus musculus BAC MGS3-404F4 (Genome Systems Mouse BAC Library)
complete sequence
Length = 122914
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 408 caaatttcatttataatcct 427
||||||||||||||||||||
Sbjct: 97670 caaatttcatttataatcct 97689
>gb|AC024164.4|AC024164 Homo sapiens chromosome 3 clone RP11-350A17 map 3p, complete sequence
Length = 154262
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 aaaggattttacatttattc 82
||||||||||||||||||||
Sbjct: 73909 aaaggattttacatttattc 73890
>gb|AF289077.1|AF289077 Homo sapiens chromosome 8 clone CTD-2003M15 map 8p23-p22, complete
sequence
Length = 145174
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 37 tgtttctattttactttttc 56
||||||||||||||||||||
Sbjct: 101771 tgtttctattttactttttc 101752
>emb|AL133418.4|AL133418 Human DNA sequence from clone RP5-835G14 on chromosome 1q42.1-43
Contains part of the gene for KIAA0117 (HAL845) protein,
part of the RBBP1 (retinoblastoma-binding protein 1) gene,
ESTs, STSs, GSSs and a CpG island, complete sequence [Homo
sapiens]
Length = 77585
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 aaagaaatccaagaactaca 116
||||||||||||||||||||
Sbjct: 48456 aaagaaatccaagaactaca 48475
>gb|AC007585.15|AC007585 Mus musculus BAC GSMB-250J8 (Genome Systems Mouse BAC Library)
complete sequence
Length = 106482
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 408 caaatttcatttataatcct 427
||||||||||||||||||||
Sbjct: 22148 caaatttcatttataatcct 22167
>gb|AF172324.1|AF172324 Escherichia coli GalF (galF) gene, partial cds; O-antigen repeat unit
transporter Wzx (wzx), WbnA (wbnA), O-antigen polymerase
Wzy (wzy), WbnB (wbnB), WbnC (wbnC), WbnD (wbnD), WbnE
(wbnE), UDP-Glc-4-epimerase GalE (galE),
6-phosphogluconate dehydrogen>
Length = 14263
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 409 aaatttcatttataatcctc 428
||||||||||||||||||||
Sbjct: 13557 aaatttcatttataatcctc 13576
>gb|AC005784.1|AC005784 Homo sapiens chromosome 19, cosmid R30335, complete sequence
Length = 43320
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 100 gaaatccaagaactacagaa 119
||||||||||||||||||||
Sbjct: 13929 gaaatccaagaactacagaa 13948
>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 87768
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 35 gttgtttctattttactttt 54
||||||||||||||||||||
Sbjct: 30739 gttgtttctattttactttt 30720
>gb|AF052208.1|AF052208 Streptococcus pneumoniae competence protein (celA) and competence
protein (celB) genes, complete cds; and unknown gene
Length = 3846
Score = 40.1 bits (20), Expect = 1.2
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 tttacatttattcaaagtcaaaag 93
||||| ||||||||||||||||||
Sbjct: 3773 tttacttttattcaaagtcaaaag 3796
>emb|Z99281.1|CEY57G11C Caenorhabditis elegans cosmid Y57G11C, complete sequence
Length = 313573
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 taatttaaaactcaaagaaa 192
||||||||||||||||||||
Sbjct: 271453 taatttaaaactcaaagaaa 271472
>gb|AC002081.1|AC002081 Homo sapiens BAC clone CTA-331C24 from 7q21, complete sequence
Length = 136150
Score = 40.1 bits (20), Expect = 1.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 aaaggattttacatttattc 82
||||||||||||||||||||
Sbjct: 2230 aaaggattttacatttattc 2249
>emb|AL132904.2|CEY111B2A Caenorhabditis elegans cosmid Y111B2A, complete sequence
Length = 110726
Score = 38.2 bits (19), Expect = 4.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 403 ttttgcaaatttcatttataatc 425
||||||||||||||||| |||||
Sbjct: 50664 ttttgcaaatttcatttttaatc 50686
>gb|AC007012.1|AC007012 Homo sapiens chromosome 16, clone 185J20, complete sequence
Length = 168731
Score = 38.2 bits (19), Expect = 4.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 161 tatgtttatacataattta 179
|||||||||||||||||||
Sbjct: 129686 tatgtttatacataattta 129704
>gb|M94286.1|TRBKPGEN Trypanosoma brucei brucei kinetoplast maxicircle genes, putative cds
Length = 23016
Score = 38.2 bits (19), Expect = 4.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 145 atttctaaatgcaacttat 163
|||||||||||||||||||
Sbjct: 16388 atttctaaatgcaacttat 16370
Database: nt
Posted date: Nov 5, 2000 8:38 AM
Number of letters in database: 2,417,169,134
Number of sequences in database: 701,224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1079203
Number of Sequences: 701224
Number of extensions: 1079203
Number of successful extensions: 93851
Number of sequences better than 10.0: 89
length of query: 627
length of database: 2,417,169,134
effective HSP length: 21
effective length of query: 606
effective length of database: 2,402,443,430
effective search space: 1455880718580
effective search space used: 1455880718580
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)