BLASTN 2.1.1 [Aug-8-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(4227 letters)
Database: h_sapiens_chromosomes.nt
2751 sequences; 651,023,445 total letters
>gi|9247291|ref|NT_000765.3|Hs17_1388| Homo sapiens chr.17 sequence.
Length = 1756649
Score = 2490 bits (1256), Expect = 0.0
Identities = 1266/1268 (99%), Gaps = 1/1268 (0%)
Strand = Plus / Plus
Query: 2615 cagatcttgtccactttgatattccctcgatccacatagagctcgggtcgacgctccgcc 2674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398343 cagatcttgtccactttgatattccctcgatccacatagagctcgggtcgacgctccgcc 398402
Query: 2675 tgagtcccctggagcacatgcggcgacactcagtaactgacaagagggactcggaggagg 2734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398403 tgagtcccctggagcacatgcggcgacactcagtaactgacaagagggactcggaggagg 398462
Query: 2735 agtctgagagcaccgccctctgacatgacaccgcccatcctgcctcgcgtgtacatacat 2794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398463 agtctgagagcaccgccctctgacatgacaccgcccatcctgcctcgcgtgtacatacat 398522
Query: 2795 cacgggccctaggaacgccgccaggagcagcgtccatgagcttgccaagtgttctctgct 2854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398523 cacgggccctaggaacgccgccaggagcagcgtccatgagcttgccaagtgttctctgct 398582
Query: 2855 ggctctttcctgccactgccaacacgaggttggaatttggcagaaaattgtgatctccag 2914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398583 ggctctttcctgccactgccaacacgaggttggaatttggcagaaaattgtgatctccag 398642
Query: 2915 tccgtgtggtgatgctggtggtgcaggttttgtttgttcctttcgggtggtgacttcggc 2974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398643 tccgtgtggtgatgctggtggtgcaggttttgtttgttcctttcgggtggtgacttcggc 398702
Query: 2975 cttttgtttgacctttgccttttgactttgtgcctcttttgatccactttcagcctccat 3034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398703 cttttgtttgacctttgccttttgactttgtgcctcttttgatccactttcagcctccat 398762
Query: 3035 gccagaaaacacccacctctccatccaaggctggtcaggaacgtcctttgcagggtcggg 3094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398763 gccagaaaacacccacctctccatccaaggctggtcaggaacgtcctttgcagggtcggg 398822
Query: 3095 gtggtgcgggagaggctcactttgcctggttagacccaagggctgctaccttttccttgg 3154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398823 gtggtgcgggagaggctcactttgcctggttagacccaagggctgctaccttttccttgg 398882
Query: 3155 acggctcatgtcaggtcttgcaggatcagtttaatggccacagaaaggaagcaggacagc 3214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398883 acggctcatgtcaggtcttgcaggatcagtttaatggccacagaaaggaagcaggacagc 398942
Query: 3215 agggcccctctcacccacaactggaccaggtccaggattctagcagtcctggggcactga 3274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398943 agggcccctctcacccacaactggaccaggtccaggattctagcagtcctggggcactga 399002
Query: 3275 cctttgccagctacctgggggagggcttgccactggaaaacctttcaggccgcccccatc 3334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399003 cctttgccagctacctgggggagggcttgccactggaaaacctttcaggccgcccccatc 399062
Query: 3335 agtgggctccaaagtaaatggctgaaaacaaaaatgtttcacttcctaacagttttcctt 3394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399063 agtgggctccaaagtaaatggctgaaaacaaaaatgtttcacttcctaacagttttcctt 399122
Query: 3395 tttccactgtgtgactgaaagctcctatatcattttatatttctgaatctataaaacaaa 3454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399123 tttccactgtgtgactgaaagctcctatatcattttatatttctgaatctataaaacaaa 399182
Query: 3455 acaaacaagcctgaaagtgtctggaggagccaaaggtggcctccctgtccccaaatatat 3514
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399183 acaaacaagcctgacagtgtctggaggagccaaaggtggcctccctgtccccaaatatat 399242
Query: 3515 tggctatatgagagtaattttacccctctacgtacctaaaggcacccagttcactagtct 3574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399243 tggctatatgagagtaattttacccctctacgtacctaaaggcacccagttcactagtct 399302
Query: 3575 gtggggtcctggagcctgtctcttctttctggaggttcaaactgaatagcaataattacg 3634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399303 gtggggtcctggagcctgtctcttctttctggaggttcaaactgaatagcaataattacg 399362
Query: 3635 ttacccaaagcatgtggaggaaaagtgaaaccagccacggagacgctggcccac-ggctc 3693
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 399363 ttacccaaagcatgtggaggaaaagtgaaaccagccacggagacgctggcccacgggctc 399422
Query: 3694 ggcctgcggtgtggcctgctttgctcaccagcgtcagccgctcatttccttctcatgaag 3753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399423 ggcctgcggtgtggcctgctttgctcaccagcgtcagccgctcatttccttctcatgaag 399482
Query: 3754 tcccatctggtcatggggacgagggccgggagggcaccgggtagccttttcacacttggg 3813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399483 tcccatctggtcatggggacgagggccgggagggcaccgggtagccttttcacacttggg 399542
Query: 3814 gattaggggagtgagaaaagatttgggccatgcatgcaaagtcaaagtttaaaattttat 3873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399543 gattaggggagtgagaaaagatttgggccatgcatgcaaagtcaaagtttaaaattttat 399602
Query: 3874 ccttttca 3881
||||||||
Sbjct: 399603 ccttttca 399610
Score = 745 bits (376), Expect = 0.0
Identities = 379/380 (99%)
Strand = Plus / Plus
Query: 2238 agtttcaaagaagctggcaccgattccacccaaggtcccctttggccagccgggggctat 2297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392843 agtttcaaagaagctggcaccgattccacccaaggtcccctttggccagccgggggctat 392902
Query: 2298 ggcagaccagtccgctggccagctgtccccagtcagcctgtcccccaccccgcccagcac 2357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 392903 ggcagaccagtccgctggccagccgtccccagtcagcctgtcccccaccccgcccagcac 392962
Query: 2358 cccgtcaccctatggactgagctaccctcaggggtactccttggcctcgggccagctctc 2417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392963 cccgtcaccctatggactgagctaccctcaggggtactccttggcctcgggccagctctc 393022
Query: 2418 cccagctgcagctcctcccctggcctctccttctgtctttacaagcactttgagcaaatc 2477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393023 cccagctgcagctcctcccctggcctctccttctgtctttacaagcactttgagcaaatc 393082
Query: 2478 gcggcccactcctaagccgcgacagagacctactctgccgcctcctcagcctcccacagt 2537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393083 gcggcccactcctaagccgcgacagagacctactctgccgcctcctcagcctcccacagt 393142
Query: 2538 aaacctctcggcctctagtccacagtccacggaggcccccatgctagatggcatgtcccc 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393143 aaacctctcggcctctagtccacagtccacggaggcccccatgctagatggcatgtcccc 393202
Query: 2598 tggggaaagcatgtctacag 2617
||||||||||||||||||||
Sbjct: 393203 tggggaaagcatgtctacag 393222
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 3929 gaaatctctctatatttgtttaatttgagccattcaatctaaaccaatgtacaggtgtac 3988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399658 gaaatctctctatatttgtttaatttgagccattcaatctaaaccaatgtacaggtgtac 399717
Query: 3989 aatgaaaaatttaaatgcttagttatttttcccaacacagtgtaaagtcaccctcctctg 4048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399718 aatgaaaaatttaaatgcttagttatttttcccaacacagtgtaaagtcaccctcctctg 399777
Query: 4049 agagtgggatgtgcagagttttgatgttgcagctttgctcacttcctggcaagggcaggt 4108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399778 agagtgggatgtgcagagttttgatgttgcagctttgctcacttcctggcaagggcaggt 399837
Query: 4109 catgcctcaatttgtaatgggagtctggggtaagggtgggggttgaaagttgttatcttt 4168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399838 catgcctcaatttgtaatgggagtctggggtaagggtgggggttgaaagttgttatcttt 399897
Query: 4169 aaatacatgtacaaatcgttgtcaaaagtaacgttattaaaatagatttattatccctg 4227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399898 aaatacatgtacaaatcgttgtcaaaagtaacgttattaaaatagatttattatccctg 399956
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 1840 agcatgggtgtgagggtcatggacacaaactgggtggctcgaagaggctcctcggccggt 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382401 agcatgggtgtgagggtcatggacacaaactgggtggctcgaagaggctcctcggccggt 382460
Query: 1900 cggaaagtgtcctgcgccccgccctccatgcagcctcccgccccgcccgccgagctggct 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382461 cggaaagtgtcctgcgccccgccctccatgcagcctcccgccccgcccgccgagctggct 382520
Query: 1960 gcgcccctgccttcgccgctgccggagcagcccctggacagccccgcggcccccgcgctc 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382521 gcgcccctgccttcgccgctgccggagcagcccctggacagccccgcggcccccgcgctc 382580
Query: 2020 tctccatccggcctgggcctccagcctgggcccgagcgcaccag 2063
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382581 tctccatccggcctgggcctccagcctgggcccgagcgcaccag 382624
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 161 ggccagacggcgcccggaggctccgcagtgccgccgccgtcgcccgggaggctccgcgcg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198013 ggccagacggcgcccggaggctccgcagtgccgccgccgtcgcccgggaggctccgcgcg 198072
Query: 221 ggagccatgtaaccctgcggcgggctccgggctgctccgtccttccccagctcccgggct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198073 ggagccatgtaaccctgcggcgggctccgggctgctccgtccttccccagctcccgggct 198132
Query: 281 agcgcggcagcggggccacgatgaagaagcagttcaatcgcatgcgccagctggccaacc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198133 agcgcggcagcggggccacgatgaagaagcagttcaatcgcatgcgccagctggccaacc 198192
Query: 341 agacggtgggcagg 354
||||||||||||||
Sbjct: 198193 agacggtgggcagg 198206
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1642 gagatagagttcaacattactggcaattatgggagtccagtacacgtgaaccataatgcc 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367030 gagatagagttcaacattactggcaattatgggagtccagtacacgtgaaccataatgcc 367089
Query: 1702 aactacagctcaatgccctccccagacatggaccctgctgaccggcgccagcccgagcag 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367090 aactacagctcaatgccctccccagacatggaccctgctgaccggcgccagcccgagcag 367149
Query: 1762 gcccgccggcccctcagcgtcgccacggataatatgatgctggagttttacaaaaaggat 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367150 gcccgccggcccctcagcgtcgccacggataatatgatgctggagttttacaaaaaggat 367209
Query: 1822 gg 1823
||
Sbjct: 367210 gg 367211
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 2061 cagcacaacaaaaagcaaggaactttctccaggctctgcacagaaaggaagtccaggctc 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388369 cagcacaacaaaaagcaaggaactttctccaggctctgcacagaaaggaagtccaggctc 388428
Query: 2121 cagccagggcacagcctgtgcagggactcaaccaggggctcaacctggagctcagccggg 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388429 cagccagggcacagcctgtgcagggactcaaccaggggctcaacctggagctcagccggg 388488
Query: 2181 cgccagccccagccccagccagccgcctgcagaccagagtcctcacaccctccggaaag 2239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388489 cgccagccccagccccagccagccgcctgcagaccagagtcctcacaccctccggaaag 388547
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1033 gaggcctgggtagagaagccttccttcgggaagccgctggaggagcacctcaccatcagc 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352382 gaggcctgggtagagaagccttccttcgggaagccgctggaggagcacctcaccatcagc 352441
Query: 1093 ggccgggagatcgccttccccatcgaggcgtgtgtgaccatgctgcttgagtgtgggatg 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352442 ggccgggagatcgccttccccatcgaggcgtgtgtgaccatgctgcttgagtgtgggatg 352501
Query: 1153 caggaggagg 1162
||||||||||
Sbjct: 352502 caggaggagg 352511
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 762 caggtggcagcagacttccaagtcttcaggtttgtccagcagcttacagcctgcgggtgc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337240 caggtggcagcagacttccaagtcttcaggtttgtccagcagcttacagcctgcgggtgc 337299
Query: 822 caaggctgatgccctcagggaagaaatggaagaggctgccaacagagtggagatttgcag 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337300 caaggctgatgccctcagggaagaaatggaagaggctgccaacagagtggagatttgcag 337359
Query: 882 gg 883
||
Sbjct: 337360 gg 337361
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1436 gatacttgataaaatttttatccaagctgtcagaatatcaagatgtaaacaagatgactc 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364180 gatacttgataaaatttttatccaagctgtcagaatatcaagatgtaaacaagatgactc 364239
Query: 1496 ccagtaatatggcaattgttttaggacccaacctcctatggccacaagcagaaggg 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364240 ccagtaatatggcaattgttttaggacccaacctcctatggccacaagcagaaggg 364295
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 575 ggaagatgctgaaactctgtggagagacggaggacaagctggctcaggagctgatacatt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324213 ggaagatgctgaaactctgtggagagacggaggacaagctggctcaggagctgatacatt 324272
Query: 635 ttgagttgcaagtagagagagacgtgattgagcccctgtttttgctggcggaggt 689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324273 ttgagttgcaagtagagagagacgtgattgagcccctgtttttgctggcggaggt 324327
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1160 agggactcttccgagtagccccctctgcctccaaactgaagaagctgaaagcggccctgg 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357452 agggactcttccgagtagccccctctgcctccaaactgaagaagctgaaagcggccctgg 357511
Query: 1220 actgctgcgtggtggatgtgcaggagtactcggcagacccccacgcaattgcagg 1274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357512 actgctgcgtggtggatgtgcaggagtactcggcagacccccacgcaattgcagg 357566
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 391 caggtggagaagcgtctggagctggtgaaacaggtgtcccacagcacgcacaagaagctc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304718 caggtggagaagcgtctggagctggtgaaacaggtgtcccacagcacgcacaagaagctc 304777
Query: 451 accgcatgtctgcagggccagcaaggggcagaggctgacaagcgctcc 498
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304778 accgcatgtctgcagggccagcaaggggcagaggctgacaagcgctcc 304825
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gactgggagcaggcagcccgggcggagcgggccggtgccgaggacggccccaggcattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197853 gactgggagcaggcagcccgggcggagcgggccggtgccgaggacggccccaggcattgc 197912
Query: 61 tctgccccgggcattgcgcggcgcgcgtgaggggga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 197913 tctgccccgggcattgcgcggcgcgcgtgaggggga 197948
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1550 ggaacattacagagatgatgaccacagtgtcgctgcaaattgttgggatcattgaaccta 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364968 ggaacattacagagatgatgaccacagtgtcgctgcaaattgttgggatcattgaaccta 365027
Query: 1610 tcatccagcatgcagactggttcttccctgggg 1642
|||||||||||||||||||||||||||||||||
Sbjct: 365028 tcatccagcatgcagactggttcttccctgggg 365060
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1272 aggagctttgaaatcttacctccgagagttgccagaacctcttatgacctttgaactcta 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357961 aggagctttgaaatcttacctccgagagttgccagaacctcttatgacctttgaactcta 358020
Query: 1332 tgatgagtggatccaggcttccaa 1355
||||||||||||||||||||||||
Sbjct: 358021 tgatgagtggatccaggcttccaa 358044
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 951 gctaatagaagtgcaagctgaataccacaggaagtccctgacactattgcaggctgtatt 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351901 gctaatagaagtgcaagctgaataccacaggaagtccctgacactattgcaggctgtatt 351960
Query: 1011 gcctcagatcaaagcacaacagg 1033
|||||||||||||||||||||||
Sbjct: 351961 gcctcagatcaaagcacaacagg 351983
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 686 aggtggaaatcccaaatattcaaaagcagaggaaacacttagccaagttggtgctggaca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328067 aggtggaaatcccaaatattcaaaagcagaggaaacacttagccaagttggtgctggaca 328126
Query: 746 tggattcctcacgaaccaggt 766
|||||||||||||||||||||
Sbjct: 328127 tggattcctcacgaaccaggt 328147
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1356 tgtccaggagcaagacaagaagcttcaggctctatggaatgcttgtgaaaagttgcccaa 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360815 tgtccaggagcaagacaagaagcttcaggctctatggaatgcttgtgaaaagttgcccaa 360874
Query: 1416 ggccaatcacaacaacatccg 1436
|||||||||||||||||||||
Sbjct: 360875 ggccaatcacaacaacatccg 360895
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 499 aaaaagttgcctttgacaacactggctcagtgtctgatggaggggtcagctatcctggga 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317211 aaaaagttgcctttgacaacactggctcagtgtctgatggaggggtcagctatcctggga 317270
Query: 559 gatgacacacttcttggg 576
||||||||||||||||||
Sbjct: 317271 gatgacacacttcttggg 317288
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 882 ggaccagctctcagctgatatgtacagttttgtggccaaagaaattgactatgcaaacta 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349369 ggaccagctctcagctgatatgtacagttttgtggccaaagaaattgactatgcaaacta 349428
Query: 942 ctttcaaacg 951
||||||||||
Sbjct: 349429 ctttcaaacg 349438
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 352 agggctgaaaagacagaagttttgagtgaagaccttcttcaggt 395
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303252 agggctgaaaagacagaagttttgagtgaagaccttcttcaggt 303295
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1823 gccttaggaaaatccaaag 1841
|||||||||||||||||||
Sbjct: 381615 gccttaggaaaatccaaag 381633
>gi|8573266|ref|NT_001454.20|Hs22_1584| Homo sapiens 22q11.2-q13.2 sequence.
Length = 23039892
Score = 46.1 bits (23), Expect = 0.037
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1301 tgccagaacctcttatgacctttgaactctatgatgagtggat 1343
||||||| ||||| |||||||| || ||||||||||| |||||
Sbjct: 17214034 tgccagagcctctgatgaccttcgacctctatgatgactggat 17214076
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2180 gcgccagccccagccccagcc 2200
|||||||||||||||||||||
Sbjct: 945252 gcgccagccccagccccagcc 945272
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2183 ccagccccagccccagccagc 2203
|||||||||||||||||||||
Sbjct: 12981044 ccagccccagccccagccagc 12981064
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2180 gcgccagccccagccccagcc 2200
|||||||||||||||||||||
Sbjct: 11271 gcgccagccccagccccagcc 11251
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2180 gcgccagccccagccccagc 2199
||||||||||||||||||||
Sbjct: 2382101 gcgccagccccagccccagc 2382082
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3478 gaggagccaaaggtggcctc 3497
||||||||||||||||||||
Sbjct: 7164261 gaggagccaaaggtggcctc 7164280
Score = 40.1 bits (20), Expect = 2.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2429 ctcctcccctggcctctccttctgtctt 2456
||||||||||| ||||||||||| ||||
Sbjct: 19574049 ctcctcccctgtcctctccttctctctt 19574076
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2426 cagctcctcccctggcctc 2444
|||||||||||||||||||
Sbjct: 21960051 cagctcctcccctggcctc 21960069
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1515 tttaggacccaacctccta 1533
|||||||||||||||||||
Sbjct: 12313889 tttaggacccaacctccta 12313907
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 3447 aaaacaaaacaaacaagcc 3465
|||||||||||||||||||
Sbjct: 13846153 aaaacaaaacaaacaagcc 13846135
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2182 gccagccccagccccagcc 2200
|||||||||||||||||||
Sbjct: 7687660 gccagccccagccccagcc 7687678
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2515 ccgcctcctcagcctccca 2533
|||||||||||||||||||
Sbjct: 11419262 ccgcctcctcagcctccca 11419280
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1150 atgcaggaggagggactct 1168
|||||||||||||||||||
Sbjct: 15957182 atgcaggaggagggactct 15957164
Score = 38.2 bits (19), Expect = 8.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 610 aagctggctcaggagctgataca 632
|||||| ||||||||||||||||
Sbjct: 13987694 aagctgcctcaggagctgataca 13987716
>gi|8134254|ref|NT_001039.18|Hs22_451| Homo sapiens 22q11.2 sequence.
Length = 1790785
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2180 gcgccagccccagccccagcc 2200
|||||||||||||||||||||
Sbjct: 238137 gcgccagccccagccccagcc 238157
>gi|9297331|ref|NT_003376.2|Hs20_3523| Homo sapiens chr.20 sequence.
Length = 188660
Score = 42.1 bits (21), Expect = 0.57
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2176 ccgggcgccagccccagccccagcc 2200
|||||| ||||||||||||||||||
Sbjct: 134051 ccgggccccagccccagccccagcc 134075
>gi|6525290|ref|NT_002406.2|Hs12_2527| Homo sapiens 12q sequence.
Length = 393511
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2180 gcgccagccccagccccagcc 2200
|||||||||||||||||||||
Sbjct: 32928 gcgccagccccagccccagcc 32908
>gi|5868493|ref|NT_000510.1|Hs8_1000| Homo sapiens 8q21 sequence.
Length = 226916
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3989 aatgaaaaatttaaatgctta 4009
|||||||||||||||||||||
Sbjct: 159582 aatgaaaaatttaaatgctta 159602
>gi|5868248|ref|NT_001561.1|Hs7_1680| Homo sapiens chr.7 sequence.
Length = 251112
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2435 ccctggcctctccttctgtct 2455
|||||||||||||||||||||
Sbjct: 120827 ccctggcctctccttctgtct 120847
>gi|5868287|ref|NT_001769.1|Hs7_1889| Homo sapiens 7q11 sequence.
Length = 95983
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 4036 tcaccctcctctgagagtggg 4056
|||||||||||||||||||||
Sbjct: 13537 tcaccctcctctgagagtggg 13517
>gi|6117820|ref|NT_000461.2|Hs7_946| Homo sapiens 7q31 sequence.
Length = 317179
Score = 42.1 bits (21), Expect = 0.57
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3991 tgaaaaatttaaatgcttagttatt 4015
||||||||||||||| |||||||||
Sbjct: 208561 tgaaaaatttaaatgattagttatt 208585
>gi|5868426|ref|NT_000417.1|Hs7_900| Homo sapiens 7q11-q22 sequence.
Length = 963535
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 836 tcagggaagaaatggaagagg 856
|||||||||||||||||||||
Sbjct: 344040 tcagggaagaaatggaagagg 344020
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4001 aaatgcttagttatttttcc 4020
||||||||||||||||||||
Sbjct: 926728 aaatgcttagttatttttcc 926709
>gi|5923958|ref|NT_002434.1|Hs3_2555| Homo sapiens 3p26 sequence.
Length = 54253
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2186 gccccagccccagccagccgc 2206
|||||||||||||||||||||
Sbjct: 4809 gccccagccccagccagccgc 4789
>gi|7382232|ref|NT_002343.3|Hs2_2462| Homo sapiens chr.2 sequence.
Length = 374600
Score = 42.1 bits (21), Expect = 0.57
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1502 atatggcaattgttttaggac 1522
|||||||||||||||||||||
Sbjct: 270347 atatggcaattgttttaggac 270367
>gi|5868573|ref|NT_001162.1|HsX_1067| Homo sapiens Xp22 sequence.
Length = 318633
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2074 agcaaggaactttctccagg 2093
||||||||||||||||||||
Sbjct: 50476 agcaaggaactttctccagg 50495
>gi|8134248|ref|NT_002835.3|Hs21_2979| Homo sapiens 21q sequence.
Length = 3429800
Score = 40.1 bits (20), Expect = 2.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 2409 ccagctctccccagctgcagctcc 2432
|||||||||||||||||| |||||
Sbjct: 2886135 ccagctctccccagctgctgctcc 2886158
>gi|8134249|ref|NT_002836.4|Hs21_2980| Homo sapiens 21q sequence.
Length = 28515322
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2518 cctcctcagcctcccacagt 2537
||||||||||||||||||||
Sbjct: 22695273 cctcctcagcctcccacagt 22695292
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2105 aaggaagtccaggctccag 2123
|||||||||||||||||||
Sbjct: 26841986 aaggaagtccaggctccag 26842004
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2939 aggttttgtttgttccttt 2957
|||||||||||||||||||
Sbjct: 2491174 aggttttgtttgttccttt 2491192
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2939 aggttttgtttgttccttt 2957
|||||||||||||||||||
Sbjct: 5913313 aggttttgtttgttccttt 5913331
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 595 ggagagacggaggacaagc 613
|||||||||||||||||||
Sbjct: 28268898 ggagagacggaggacaagc 28268916
>gi|9247309|ref|NT_001693.5|Hs20_1814| Homo sapiens 20q12-q13.11 sequence.
Length = 983850
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1932 gcctcccgccccgcccgccg 1951
||||||||||||||||||||
Sbjct: 897631 gcctcccgccccgcccgccg 897650
>gi|5867370|ref|NT_000920.1|Hs19_305| Homo sapiens 19p13.1 sequence.
Length = 129577
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2518 cctcctcagcctcccacagt 2537
||||||||||||||||||||
Sbjct: 85090 cctcctcagcctcccacagt 85071
>gi|7938932|ref|NT_000759.3|Hs17_1358| Homo sapiens chr.17 sequence.
Length = 1325282
Score = 40.1 bits (20), Expect = 2.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1137 gcttgagtgtgggatgcaggagga 1160
||||||||||||||||||| ||||
Sbjct: 210288 gcttgagtgtgggatgcagaagga 210311
>gi|5866934|ref|NT_000609.1|Hs12_1341| Homo sapiens 12q13.1 sequence.
Length = 399003
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2518 cctcctcagcctcccacagt 2537
||||||||||||||||||||
Sbjct: 390807 cctcctcagcctcccacagt 390826
>gi|5866943|ref|NT_000620.1|Hs12_1352| Homo sapiens 12q24.2 sequence.
Length = 1016481
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1973 cgccgctgccggagcagccc 1992
||||||||||||||||||||
Sbjct: 655765 cgccgctgccggagcagccc 655746
>gi|6552436|ref|NT_001523.2|Hs12_1647| Homo sapiens 12q sequence.
Length = 219630
Score = 40.1 bits (20), Expect = 2.3
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3434 tttctgaatctataaaacaaaacaaaca 3461
||||| ||||||||||||||| ||||||
Sbjct: 100463 tttctcaatctataaaacaaagcaaaca 100490
>gi|6552430|ref|NT_000538.3|Hs10_61| Homo sapiens chr.10 sequence.
Length = 164967
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1863 cacaaactgggtggctcgaa 1882
||||||||||||||||||||
Sbjct: 96333 cacaaactgggtggctcgaa 96314
>gi|5868525|ref|NT_000521.1|Hs9_1016| Homo sapiens 9q34 sequence.
Length = 33769
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 727 gccaagttggtgctggacat 746
||||||||||||||||||||
Sbjct: 11964 gccaagttggtgctggacat 11983
>gi|5868259|ref|NT_001648.1|Hs7_1769| Homo sapiens chr.7 sequence.
Length = 427147
Score = 40.1 bits (20), Expect = 2.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3010 cttttgatccactttcagcctcca 3033
||||| ||||||||||||||||||
Sbjct: 159891 cttttaatccactttcagcctcca 159914
>gi|5868222|ref|NT_001433.1|Hs7_1525| Homo sapiens 7q33-q36 sequence.
Length = 161910
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2518 cctcctcagcctcccacagt 2537
||||||||||||||||||||
Sbjct: 132257 cctcctcagcctcccacagt 132276
>gi|5868441|ref|NT_000435.1|Hs7_919| Homo sapiens 7q21.1-q31.1
sequence.
Length = 216384
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 ctgggagcaggcagcccggg 22
||||||||||||||||||||
Sbjct: 9839 ctgggagcaggcagcccggg 9858
>gi|7629979|ref|NT_003343.2|Hs7_3490| Homo sapiens 7q21-q22 sequence.
Length = 2044635
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2994 ttttgactttgtgcctcttt 3013
||||||||||||||||||||
Sbjct: 1254913 ttttgactttgtgcctcttt 1254932
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2939 aggttttgtttgttccttt 2957
|||||||||||||||||||
Sbjct: 134397 aggttttgtttgttccttt 134379
>gi|5868111|ref|NT_002395.1|Hs6_2516| Homo sapiens 6q13-q14.3 sequence.
Length = 125641
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2518 cctcctcagcctcccacagt 2537
||||||||||||||||||||
Sbjct: 16154 cctcctcagcctcccacagt 16173
>gi|5868173|ref|NT_000274.1|Hs6_751| Homo sapiens 6p21 sequence.
Length = 146746
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2512 ctgccgcctcctcagcctcc 2531
||||||||||||||||||||
Sbjct: 50161 ctgccgcctcctcagcctcc 50180
>gi|7382283|ref|NT_000259.3|Hs6_736| Homo sapiens 6p21.3-p22.3 sequence.
Length = 859938
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2183 ccagccccagccccagccag 2202
||||||||||||||||||||
Sbjct: 160433 ccagccccagccccagccag 160452
>gi|7060628|ref|NT_003085.2|Hs3_3232| Homo sapiens 3q21 sequence.
Length = 184983
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3493 gcctccctgtccccaaatat 3512
||||||||||||||||||||
Sbjct: 47236 gcctccctgtccccaaatat 47217
>gi|6138917|ref|NT_002641.1|Hs2_2787| Homo sapiens chr.2 sequence.
Length = 175179
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2727 ggaggaggagtctgagagca 2746
||||||||||||||||||||
Sbjct: 64142 ggaggaggagtctgagagca 64123
>gi|7328608|ref|NT_002249.2|Hs20_2368| Homo sapiens 20p12-p13 sequence.
Length = 153170
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3224 ctcacccacaactggacca 3242
|||||||||||||||||||
Sbjct: 114976 ctcacccacaactggacca 114994
>gi|5868273|ref|NT_001711.1|Hs7_1831| Homo sapiens 7q33-q35 sequence.
Length = 286587
Score = 38.2 bits (19), Expect = 8.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2183 ccagccccagccccagcca 2201
|||||||||||||||||||
Sbjct: 89296 ccagccccagccccagcca 89314
Database: h_sapiens_chromosomes.nt
Posted date: Nov 12, 2000 6:47 PM
Number of letters in database: 651,023,445
Number of sequences in database: 2751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2131510
Number of Sequences: 2751
Number of extensions: 2131510
Number of successful extensions: 305679
Number of sequences better than 10.0: 151
length of query: 4227
length of database: 651,023,445
effective HSP length: 21
effective length of query: 4206
effective length of database: 650,965,674
effective search space: 2737961624844
effective search space used: 2737961624844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)