Legend:
- means that the alignment score was below the threshold on the previous iteration
- means that the alignment was checked on the previous iteration
Sequences with E-value BETTER than threshold
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_065138.1| tumor endothelial marker 7 precursor [Homo sapi... 167 4e-41
ref|XP_008292.1| tumor endothelial marker 7 precursor [Homo sapi... 165 1e-40
pir||T19786 hypothetical protein C36E8.3 - Caenorhabditis elegan... 154 2e-37
gb|AAF46578.1| (AE003450) CG2221 gene product [Drosophila melano... 154 3e-37
pir||S31213 nidogen precursor - sea squirt (Halocynthia roretzi)... 125 1e-28
pir||T30243 alpha tectorin - chicken >gi|4049439|emb|CAA09979.1|... 121 2e-27
ref|NP_032721.1| nidogen 2 [Mus musculus] >gi|8928260|sp|O88322|... 120 4e-27
sp|Q14112|NID2_HUMAN NIDOGEN-2 PRECURSOR (NID-2) (OSTEONIDOGEN) ... 120 5e-27
ref|XP_007323.1| nidogen 2 [Homo sapiens] 117 5e-26
gb|AAF58809.1| (AE003830) CG12908 gene product [Drosophila melan... 115 2e-25
ref|NP_033373.1| tectorin alpha; [a]-tectorin [Mus musculus] >gi... 99 2e-20
ref|NP_005413.1| tectorin alpha precursor; Tectorin, alpha [Homo... 98 2e-20
ref|XP_006310.1| tectorin alpha precursor [Homo sapiens] 95 2e-19
pir||MMHUND nidogen precursor - human 65 3e-10
ref|NP_002499.1| nidogen (enactin); Nidogen; nidogen (entactin) ... 64 3e-10
emb|CAA57709.1| (X82245) nidogen [Homo sapiens] 64 3e-10
ref|XP_002042.1| nidogen (enactin) [Homo sapiens] 64 5e-10
ref|NP_035047.1| nidogen [Mus musculus] >gi|128200|sp|P10493|NID... 62 2e-09
emb|CAA32642.1| (X14480) prenidogen (AA -28 to 1217) [Mus musculus] 61 3e-09
gb|AAA77652.1| (L17324) entactin [Mus musculus] 54 7e-07
sp|P08460|NIDO_RAT NIDOGEN (ENTACTIN) >gi|92554|pir||S14828 nido... 43 7e-04
sp|P41950|YLK2_CAEEL HYPOTHETICAL 122.7 KD PROTEIN D1044.2 IN CH... 42 0.001
Sequences with E-value WORSE than threshold
gb|AAF23818.1|AF218265_1 (AF218265) mucin Muc4 [Mus musculus] 40 0.008
gb|AAA41120.1| (M15797) entactin [Rattus norvegicus] 39 0.013
gb|AAF57124.1| (AE003777) CG15560 gene product [Drosophila melan... 38 0.029
Alignments
>ref|NP_065138.1| tumor endothelial marker 7 precursor [Homo sapiens]
gb|AAG00869.1|AF279144_1 (AF279144) tumor endothelial marker 7 precursor [Homo sapiens]
Length = 502
Score = 167 bits (420), Expect = 4e-41
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD
Sbjct: 137 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 196
Query: 61 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 98
NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA
Sbjct: 197 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 234
>ref|XP_008292.1| tumor endothelial marker 7 precursor [Homo sapiens]
Length = 296
Score = 165 bits (416), Expect = 1e-40
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD
Sbjct: 164 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 223
Query: 61 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 98
NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA
Sbjct: 224 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 261
>pir||T19786 hypothetical protein C36E8.3 - Caenorhabditis elegans
emb|CAA84646.1| (Z35597) Weak similarity with sea squirt nidogen precursor protein
(blastp score 71)~cDNA EST EMBL:T02069 comes from this
gene~cDNA EST yk114g11.5 comes from this gene~cDNA EST
yk114g11.3 comes from this gene~cDNA EST yk85g6.3 comes
from this gene~cDNA>
Length = 476
Score = 154 bits (388), Expect = 2e-37
Identities = 56/97 (57%), Positives = 72/97 (73%), Gaps = 1/97 (1%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
L F FPFYGH + +TIATGGFI++GD H L ATQY+APLMANF+ Y +NS +VY D
Sbjct: 156 LQFKFPFYGHKMSNLTIATGGFIYIGDHSHNWLAATQYIAPLMANFHT-YLNNSNIVYAD 214
Query: 61 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVF 97
+G +FVV+W +V L+ +D+ SFTFQ LH +G IVF
Sbjct: 215 DGELFVVEWRNVQLKEDKDEHSFTFQTILHKNGDIVF 251
>gb|AAF46578.1| (AE003450) CG2221 gene product [Drosophila melanogaster]
Length = 625
Score = 154 bits (387), Expect = 3e-37
Identities = 54/98 (55%), Positives = 67/98 (68%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFD 60
L FDFPFYGH +R IT+ATGGF++ G+ +H L ATQY+APLMANF+ S++S V D
Sbjct: 258 LKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRLHD 317
Query: 61 NGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFA 98
NGT F W++V LQ D G FTF L+ G IVFA
Sbjct: 318 NGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSGDIVFA 355
>pir||S31213 nidogen precursor - sea squirt (Halocynthia roretzi)
dbj|BAA03127.1| (D14038) entactin/nidogen [Halocynthia roretzi]
Length = 1161
Score = 125 bits (313), Expect = 1e-28
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYS--------- 51
LS FY +T+ T GFI + +V +AP M++ + S
Sbjct: 47 LSMPIVFYDQKYDSVTVHTDGFITLENVGAD-TDGEVLLAPFMSDLDTELSGDIFFREHK 105
Query: 52 DNSTVVY---------------FDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIV 96
DN+T+ F+ G+VFVV WD V ED +FTFQ + DG
Sbjct: 106 DNATIARANTDVREAFIETAGDFNAGSVFVVTWDKVQSASREDGVTFTFQCIVATDGAAT 165
Query: 97 FA 98
FA
Sbjct: 166 FA 167
>pir||T30243 alpha tectorin - chicken
emb|CAA09979.1| (AJ012287) alpha tectorin [Gallus gallus]
Length = 2120
Score = 121 bits (303), Expect = 2e-27
Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 31/129 (24%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRML-------TATQYVAPLMANF------- 46
LS F F+ P R + + G I ++ + +VAP +
Sbjct: 51 LSVPFIFFRSPYRTVYVNNNGVISFNSLVSQFTPEAFPLADGRAFVAPFCGDVANGIRGE 110
Query: 47 -------NPGYSDNST---------VVYFDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
NP S+ + F VF+V W+ V G TFQA L
Sbjct: 111 IYYRESTNPELLGESSKDIRKYFKDMASFSASWVFIVTWEEVQFYGGSSTTPVNTFQAVL 170
Query: 90 HHDGRIVFA 98
DG FA
Sbjct: 171 ITDGVSSFA 179
>ref|NP_032721.1| nidogen 2 [Mus musculus]
sp|O88322|NID2_MOUSE NIDOGEN-2 PRECURSOR (NID-2) (ENTACTIN-2)
dbj|BAA32609.1| (AB017202) entactin-2 [Mus musculus]
Length = 1403
Score = 120 bits (300), Expect = 4e-27
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 38/136 (27%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIH-------RMLTATQYVAPLMANFNPGYSDN 53
L+ FY + + T G I D T +AP +A+ + +S
Sbjct: 61 LAIPLRFYDAQFSSLYVGTNGIISTQDFPRETQYVDDDFPTDFPAIAPFLADIDTSHSRG 120
Query: 54 STVVY-------------------------FDNGTVFVVQWDHVYLQGWEDKGS------ 82
+ F F+ W+HV +G+
Sbjct: 121 RILYREDTSGAVLSLAARYVRTGFPLSGSSFTPTHAFLATWEHVGAYEEVSRGAAPSGEL 180
Query: 83 FTFQAALHHDGRIVFA 98
TFQA L D +A
Sbjct: 181 NTFQAVLASDESDTYA 196
>sp|Q14112|NID2_HUMAN NIDOGEN-2 PRECURSOR (NID-2) (OSTEONIDOGEN)
emb|CAA11418.1| (AJ223500) nidogen-2 [Homo sapiens]
Length = 1375
Score = 120 bits (299), Expect = 5e-27
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 37/135 (27%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGD-------VIHRMLTATQYVAPLMANFNPG---- 49
L+ FY + + T G I D V + T +AP +A+ +
Sbjct: 61 LANPLHFYEARFSNLYVGTNGIISTQDFPRETQYVDYDFPTDFPAIAPFLADIDTSHGRG 120
Query: 50 ---YSDNST-----------------VVYFDNGTVFVVQWDHVYLQGW------EDKGSF 83
Y ++++ F F+ W+ V
Sbjct: 121 RVLYREDTSPAVLGLAARYVRAGFPRSARFTPTHAFLATWEQVGAYEEVKRGALPSGELN 180
Query: 84 TFQAALHHDGRIVFA 98
TFQA L DG +A
Sbjct: 181 TFQAVLASDGSDSYA 195
>ref|XP_007323.1| nidogen 2 [Homo sapiens]
Length = 531
Score = 117 bits (291), Expect = 5e-26
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 37/135 (27%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGD-------VIHRMLTATQYVAPLMANFNPG---- 49
L+ FY + + T G I D V + T +AP +A+ +
Sbjct: 61 LANPLHFYEARFSNLYVGTNGIISTQDFPRETQYVDYDFPTDFPAIAPFLADIDTSHGRG 120
Query: 50 ---YSDNST-----------------VVYFDNGTVFVVQWDHVYLQGW------EDKGSF 83
Y ++++ F F+ W+ V
Sbjct: 121 RVLYREDTSPAVLGLAARYVRAGFPRSARFTPTHAFLATWEQVGAYEEVKRGALPSGELN 180
Query: 84 TFQAALHHDGRIVFA 98
TFQA L DG +A
Sbjct: 181 TFQAVLASDGSDSYA 195
>gb|AAF58809.1| (AE003830) CG12908 gene product [Drosophila melanogaster]
Length = 1352
Score = 115 bits (286), Expect = 2e-25
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 33/129 (25%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTAT-----QYVAPLMANFNPGYSDNST 55
L FYG Q+ I T G + L +A +N + +SD T
Sbjct: 62 LEQPIHFYGEQYEQLYINTNGILTFNSEFPEYLNQPFPLEYASIAAFYSNVDTSFSDEGT 121
Query: 56 -------------------VVY-------FDNGTVFVVQWDHV-YLQGWEDKGSFTFQAA 88
V Y F+ V V W +V Y D+ + TFQ A
Sbjct: 122 SISLFESKEQSILDRASSLVRYAFSSQSEFEARQVIVATWRNVGYFDSKTDRLN-TFQVA 180
Query: 89 LHHDGRIVF 97
L + + F
Sbjct: 181 LIANEQSTF 189
>ref|NP_033373.1| tectorin alpha; [a]-tectorin [Mus musculus]
pir||T30197 alpha tectorin - mouse
emb|CAA68138.1| (X99805) alpha tectorin [Mus musculus]
Length = 2155
Score = 98.8 bits (244), Expect = 2e-20
Identities = 25/128 (19%), Positives = 41/128 (31%), Gaps = 31/128 (24%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-------LTATQYVAPLMANFNPGYSDN 53
L+ F+G P R + + G + ++ + ++AP A+ + G
Sbjct: 51 LAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFIAPFWADVHNGIRGE 110
Query: 54 ---------STVVY--------------FDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
+ + F VF+V W+ V G TFQA L
Sbjct: 111 IYYRETMDPAILRRATKDIRKYFKDMTTFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVL 170
Query: 90 HHDGRIVF 97
DG F
Sbjct: 171 VSDGSYTF 178
>ref|NP_005413.1| tectorin alpha precursor; Tectorin, alpha [Homo sapiens]
gb|AAC26019.1| (AF055136) alpha-tectorin [Homo sapiens]
Length = 2155
Score = 98.4 bits (243), Expect = 2e-20
Identities = 26/128 (20%), Positives = 40/128 (30%), Gaps = 31/128 (24%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-------LTATQYVAPLMANFNPGYSDN 53
L+ F+G P R + + G + ++ + +VAP A+ + G
Sbjct: 51 LAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGE 110
Query: 54 -----------------------STVVYFDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
+ F VF+V W+ V G TFQA L
Sbjct: 111 IYYRETMEPAILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVL 170
Query: 90 HHDGRIVF 97
DG F
Sbjct: 171 VSDGSYTF 178
>ref|XP_006310.1| tectorin alpha precursor [Homo sapiens]
Length = 1094
Score = 95.3 bits (235), Expect = 2e-19
Identities = 26/128 (20%), Positives = 40/128 (30%), Gaps = 31/128 (24%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-------LTATQYVAPLMANFNPGYSDN 53
L+ F+G P R + + G + ++ + +VAP A+ + G
Sbjct: 51 LAIPVFFFGVPYRTVYVNNNGVVSFNVLVSQFTPESFPLTDGRAFVAPFWADVHNGIRGE 110
Query: 54 -----------------------STVVYFDNGTVFVVQWDHVYLQGWEDKGS-FTFQAAL 89
+ F VF+V W+ V G TFQA L
Sbjct: 111 IYYRETMEPAILKRATKDIRKYFKDMATFSATWVFIVTWEEVTFYGGSSTTPVNTFQAVL 170
Query: 90 HHDGRIVF 97
DG F
Sbjct: 171 VSDGSYTF 178
>pir||MMHUND nidogen precursor - human
Length = 1247
Score = 64.9 bits (157), Expect = 3e-10
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)
Query: 1 LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
LS FY + + + T G I VAP +A+ +
Sbjct: 59 LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 118
Query: 50 ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
Y ++ + + F + VV W+ V + T
Sbjct: 119 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 178
Query: 85 FQAALHHDGRIVFA 98
FQA L +A
Sbjct: 179 FQAVLASSDSSSYA 192
>ref|NP_002499.1| nidogen (enactin); Nidogen; nidogen (entactin) [Homo sapiens]
sp|P14543|NIDO_HUMAN NIDOGEN PRECURSOR (ENTACTIN)
gb|AAA59932.1| (M30269) nidogen [Homo sapiens]
Length = 1247
Score = 64.5 bits (156), Expect = 3e-10
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)
Query: 1 LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
LS FY + + + T G I VAP +A+ +
Sbjct: 59 LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 118
Query: 50 ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
Y ++ + + F + VV W+ V + T
Sbjct: 119 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 178
Query: 85 FQAALHHDGRIVFA 98
FQA L +A
Sbjct: 179 FQAVLASSDSSSYA 192
>emb|CAA57709.1| (X82245) nidogen [Homo sapiens]
Length = 1246
Score = 64.5 bits (156), Expect = 3e-10
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)
Query: 1 LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
LS FY + + + T G I VAP +A+ +
Sbjct: 58 LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 117
Query: 50 ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
Y ++ + + F + VV W+ V + T
Sbjct: 118 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 177
Query: 85 FQAALHHDGRIVFA 98
FQA L +A
Sbjct: 178 FQAVLASSDSSSYA 191
>ref|XP_002042.1| nidogen (enactin) [Homo sapiens]
Length = 1110
Score = 64.1 bits (155), Expect = 5e-10
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)
Query: 1 LSFDFPFYG-HPLRQITIATGGFIFM------GDVIHRMLTATQYVAPLMANFNPG---- 49
LS FY + + + T G I VAP +A+ +
Sbjct: 89 LSGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFGAVAPFLADLDTTDGLG 148
Query: 50 ---YSDNST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FT 84
Y ++ + + F + VV W+ V + T
Sbjct: 149 KVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESVAPYQGPSRDPDQKGKRNT 208
Query: 85 FQAALHHDGRIVFA 98
FQA L +A
Sbjct: 209 FQAVLASSDSSSYA 222
>ref|NP_035047.1| nidogen [Mus musculus]
sp|P10493|NIDO_MOUSE NIDOGEN PRECURSOR (ENTACTIN)
pir||MMMSND nidogen precursor - mouse
emb|CAA32408.1| (X14194) enactin precursor (AA -28 to 1217) [Mus musculus]
prf||1504282A entactin [Mus musculus]
Length = 1245
Score = 61.8 bits (149), Expect = 2e-09
Identities = 25/128 (19%), Positives = 39/128 (29%), Gaps = 36/128 (28%)
Query: 7 FYGHP-LRQITIATGGFIFMGD------VIHRMLTATQYVAPLMANFNPG-------YSD 52
FY + + + T G I M + + VAP +A+ + Y +
Sbjct: 65 FYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYRE 124
Query: 53 NST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FTFQAALH 90
+ + V F +V VV W+ V G TFQA L
Sbjct: 125 DLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSPAEEGKRNTFQAVLA 184
Query: 91 HDGRIVFA 98
+A
Sbjct: 185 SSNSSSYA 192
>emb|CAA32642.1| (X14480) prenidogen (AA -28 to 1217) [Mus musculus]
Length = 1245
Score = 61.4 bits (148), Expect = 3e-09
Identities = 25/128 (19%), Positives = 39/128 (29%), Gaps = 36/128 (28%)
Query: 7 FYGHP-LRQITIATGGFIFMGD------VIHRMLTATQYVAPLMANFNPG-------YSD 52
FY + + + T G I M + + VAP +A+ + Y +
Sbjct: 65 FYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYRE 124
Query: 53 NST----------------VVYFDNGTVFVVQWDHVYLQGWED------KGSFTFQAALH 90
+ + V F +V VV W+ V G TFQA L
Sbjct: 125 DLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSLAEEGKRNTFQAVLA 184
Query: 91 HDGRIVFA 98
+A
Sbjct: 185 SSNSSSYA 192
>gb|AAA77652.1| (L17324) entactin [Mus musculus]
Length = 250
Score = 53.6 bits (128), Expect = 7e-07
Identities = 25/128 (19%), Positives = 39/128 (29%), Gaps = 36/128 (28%)
Query: 7 FYGHP-LRQITIATGGFIFMGD------VIHRMLTATQYVAPLMANFNPG-------YSD 52
FY + + + T G I M + + VAP +A+ + Y +
Sbjct: 65 FYDRTDITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYRE 124
Query: 53 NST----------------VVYFDNGTVFVVQWDHVYLQGWEDKGS------FTFQAALH 90
+ + V F +V VV W+ V G TFQA L
Sbjct: 125 DLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESVAPYGGPSSSPAEEGKRNTFQAVLA 184
Query: 91 HDGRIVFA 98
+A
Sbjct: 185 SSNSSSYA 192
>sp|P08460|NIDO_RAT NIDOGEN (ENTACTIN)
pir||S14828 nidogen - rat (fragment)
Length = 324
Score = 43.4 bits (102), Expect = 7e-04
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 29/100 (29%)
Query: 28 VIHRMLTATQYVAPLMANFNPG-------YSDNST----------------VVYFDNGTV 64
+ VAP +A+ + Y ++ + V F +V
Sbjct: 3 HPGTFPPSFGSVAPFLADLDTTDGLGNVYYREDLSPFIIQMAAEYVQRGFPEVSFQPTSV 62
Query: 65 FVVQWDHVYLQGWEDKGS------FTFQAALHHDGRIVFA 98
VV W+ + G TFQA L +A
Sbjct: 63 VVVTWESMAPYGGPSGSLVEEGKRNTFQAVLASSNSSSYA 102
>sp|P41950|YLK2_CAEEL HYPOTHETICAL 122.7 KD PROTEIN D1044.2 IN CHROMOSOME III
pir||T15884 hypothetical protein D1044.2 - Caenorhabditis elegans
gb|AAA50734.1| (U00065) D1044.2 gene product [Caenorhabditis elegans]
Length = 1107
Score = 42.3 bits (99), Expect = 0.001
Identities = 20/129 (15%), Positives = 40/129 (30%), Gaps = 33/129 (25%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHRM-----LTATQYVAPLMANFNPGYSDNST 55
L F+G + I I + G + ++T+++AP + +
Sbjct: 171 LVHPISFFGSDYKTIYILSNGAVGFEASSRSYKSGILPSSTRFLAPFWNRND--LRNGGK 228
Query: 56 VVYFDNG-----------------------TVFVVQWDHVY---LQGWEDKGSFTFQAAL 89
V Y + + ++ WD + ++ + TFQAA+
Sbjct: 229 VYYREVTKGRVLERGQSEIRYQYDKNVKVKSALIITWDKMQPLNTAALPEENTNTFQAAI 288
Query: 90 HHDGRIVFA 98
FA
Sbjct: 289 FITANGTFA 297
Score = 30.2 bits (68), Expect = 7.4
Identities = 10/53 (18%), Positives = 19/53 (34%), Gaps = 4/53 (7%)
Query: 1 LSFDFPFYGHPLRQITIATGGFIFMGDVIHR--MLTATQY--VAPLMANFNPG 49
L +G ++T+ + G I + +V L Q +AP +
Sbjct: 534 LKKPLKIFGETTEKLTVTSTGLIAINEVNRDNGRLEDMQLVGIAPFFGPIDLS 586
>gb|AAF23818.1|AF218265_1 (AF218265) mucin Muc4 [Mus musculus]
Length = 1403
Score = 39.9 bits (93), Expect = 0.008
Identities = 17/79 (21%), Positives = 28/79 (34%), Gaps = 5/79 (6%)
Query: 21 GFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQ-GWED 79
G IF + + Q + +D ++ + V W +V E
Sbjct: 403 GAIFYQEYVTFYNEHHQLI----REVETLINDFTSSWGYRAKWTLKVTWVNVPAYTAQES 458
Query: 80 KGSFTFQAALHHDGRIVFA 98
G+ T+QA L DG +A
Sbjct: 459 FGTNTYQAILSTDGSRSYA 477
>gb|AAA41120.1| (M15797) entactin [Rattus norvegicus]
Length = 243
Score = 39.2 bits (91), Expect = 0.013
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 29/100 (29%)
Query: 28 VIHRMLTATQYVAPLMANFNPG-------YSDNST----------------VVYFDNGTV 64
+ VAP +A+ + Y ++ + V F +V
Sbjct: 3 HPGTFPPSFGSVAPFLADLDTTDGLGNVYYREDLSPFIIQMAAEYVQRGFPEVSFQPTSV 62
Query: 65 FVVQWDHVYLQGWEDKGS------FTFQAALHHDGRIVFA 98
VV W+ + G TFQA L +A
Sbjct: 63 VVVTWESMAPCGGPSGSLVEEGKRNTFQAVLASSNSSSYA 102
>gb|AAF57124.1| (AE003777) CG15560 gene product [Drosophila melanogaster]
Length = 619
Score = 38.0 bits (88), Expect = 0.029
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 59 FDNGTVFVVQWDHVYLQGWEDK---GSFTFQAALHHDGRIVF 97
F V + W +V G D + TFQ L D +
Sbjct: 293 FIPKHVVIATWKNVSFAGGIDNSLYTTNTFQMVLATDEVYTY 334
CPU time: 21.88 user secs. 0.91 sys. secs 22.79 total secs.
Database: nr
Posted date: Dec 3, 2000 6:52 PM
Number of letters in database: 187,673,620
Number of sequences in database: 593,541
Lambda K H
0.314 0.181 0.528
Gapped
Lambda K H
0.270 0.0636 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45655093
Number of Sequences: 593541
Number of extensions: 1925798
Number of successful extensions: 5299
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 54
length of query: 98
length of database: 187,673,620
effective HSP length: 44
effective length of query: 54
effective length of database: 161,557,816
effective search space: 8724122064
effective search space used: 8724122064
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (20.6 bits)
S2: 67 (30.1 bits)