Score E
Sequences producing significant alignments: (bits) Value
ref|NP_060824.1| hypothetical protein FLJ11190 [Homo sapien... 433 e-120
ref|NP_041073.1| transcriptional activator [Equine herpesvi... 34 2.4
sp|P17473|ICP4_HSVEK TRANS-ACTING TRANSCRIPTIONAL PROTEIN I... 34 2.4
pir||T34518 nestin - golden hamster (fragment) >gi|4063503|... 33 3.1
gb|AAG35188.1|AF290214_1 (AF290214) calcium channel alpha-1... 32 7.0
ref|NP_064469.1| low voltage-activated T-type calcium chann... 32 7.0
gb|AAC64924.1| (AF066860) homeodomain protein; MNR2 [Gallus... 32 7.0
ref|NP_044328.1| ORF for replicase protein [Kennedya yellow... 32 9.2
>ref|NP_060824.1| hypothetical protein FLJ11190 [Homo sapiens]
ref|XP_009623.1| hypothetical protein FLJ11190 [Homo sapiens]
dbj|BAA92058.1| (AK002052) unnamed protein product [Homo sapiens]
emb|CAC16505.1| (AL031665) dJ545L17.5.1 (novel protein) [Homo sapiens]
Length = 256
Score = 433 bits (1101), Expect = e-120
Identities = 218/256 (85%), Positives = 218/256 (85%)
Query: 1 MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTREGVE 60
MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTREGVE
Sbjct: 1 MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTREGVE 60
Query: 61 NACFSSEEHETHFQNPGNTXXXXXXXXXXXXXXXXXXQRDDLSLHSEEGPALEPVSRPVD 120
NACFSSEEHETHFQNPGNT QRDDLSLHSEEGPALEPVSRPVD
Sbjct: 61 NACFSSEEHETHFQNPGNTRLGSSPSPPGGVSSLPRSQRDDLSLHSEEGPALEPVSRPVD 120
Query: 121 YGFVSALVFLVSGILLVVTAYAIPREARVNPDTVTAREMERLEMYYARLGSHLDRCIIAX 180
YGFVSALVFLVSGILLVVTAYAIPREARVNPDTVTAREMERLEMYYARLGSHLDRCIIA
Sbjct: 121 YGFVSALVFLVSGILLVVTAYAIPREARVNPDTVTAREMERLEMYYARLGSHLDRCIIAG 180
Query: 181 XXXXXXXXXXXXXXXXXXXCKGELYRRRTFVPGKGSRKTYGSINLRMRQLNGDGGQALVE 240
CKGELYRRRTFVPGKGSRKTYGSINLRMRQLNGDGGQALVE
Sbjct: 181 LGLLTVGGMLLSVLLMVSLCKGELYRRRTFVPGKGSRKTYGSINLRMRQLNGDGGQALVE 240
Query: 241 NEVVQVSETSHTLQRS 256
NEVVQVSETSHTLQRS
Sbjct: 241 NEVVQVSETSHTLQRS 256
>ref|NP_041073.1| transcriptional activator [Equine herpesvirus 1]
ref|NP_041089.1| transcriptional activator [Equine herpesvirus 1]
sp|P28925|ICP4_HSVEB TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP4 (155 KD IMMEDIATE-EARLY
PROTEIN)
pir||EDBEF6 155K transcription activator - equine herpesvirus 1 (strain Ab4p)
gb|AAB02499.1| (M86664) transcriptional activator [Equine herpesvirus 1]
gb|AAB02515.1| (M86664) transcriptional activator [Equine herpesvirus 1]
Length = 1487
Score = 33.6 bits (75), Expect = 2.4
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 2 PPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTREG 58
P AQ A+ PS P+ SPP + + + G QAPR P+ P R G
Sbjct: 937 PAAQAGASASFSSSARGYDPSGPVDSPPAPKRRVATPGHQAPRALGPMPAEGPDRRG 993
>sp|P17473|ICP4_HSVEK TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP4 (155 KD IMMEDIATE-EARLY
PROTEIN)
pir||EDBEE1 immediate-early protein - equine herpesvirus 1
gb|AAA46089.1| (J04366) immediate-early protein [Equine herpesvirus 1]
Length = 1487
Score = 33.6 bits (75), Expect = 2.4
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 2 PPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTREG 58
P AQ A+ PS P+ SPP + + + G QAPR P+ P R G
Sbjct: 937 PAAQAGASASFSSSARGYDPSGPVDSPPAPKRRVATPGHQAPRALGPMPAEGPDRRG 993
>pir||T34518 nestin - golden hamster (fragment)
gb|AAC98312.1| (AF110498) nestin [Mesocricetus auratus]
Length = 1804
Score = 33.2 bits (74), Expect = 3.1
Identities = 22/79 (27%), Positives = 34/79 (42%), Gaps = 13/79 (16%)
Query: 5 QGYEFAAAKGPRDELGPSFPMASPPGLELKTLSN-----------GPQAPRRSAPLGPVA 53
Q +E + + DELG + P ++P GL L++ ++ PQ R GP
Sbjct: 1476 QDWEESREESEADELGETLPDSTPLGLYLRSPTSPKWDQAGEQRLSPQGEARKEGWGPAV 1535
Query: 54 PTREGVENACFSSEEHETH 72
P +G+ N EE H
Sbjct: 1536 PAAQGLSNP--PGEEERGH 1552
>gb|AAG35188.1|AF290214_1 (AF290214) calcium channel alpha-1-I subunit [Rattus norvegicus]
Length = 1834
Score = 32.1 bits (71), Expect = 7.0
Identities = 19/53 (35%), Positives = 23/53 (42%), Gaps = 2/53 (3%)
Query: 1 MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVA 53
+PP+ A G ++ GP P SPPGLE P P L PVA
Sbjct: 6 LPPSSAAAPAPEPGITEQPGPRSPPPSPPGLEEPLEGTNPDVPH--PDLAPVA 56
>ref|NP_064469.1| low voltage-activated T-type calcium channel alpha-1 subunit
(CACNA1I) [Rattus norvegicus]
sp|Q9Z0Y8|CCAI_RAT VOLTAGE-DEPENDENT T-TYPE CALCIUM CHANNEL ALPHA-1I SUBUNIT
(CAVT.3)
gb|AAD17796.1| (AF086827) low voltage-activated T-type calcium channel alpha-1
subunit [Rattus norvegicus]
Length = 1835
Score = 32.1 bits (71), Expect = 7.0
Identities = 19/53 (35%), Positives = 23/53 (42%), Gaps = 2/53 (3%)
Query: 1 MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVA 53
+PP+ A G ++ GP P SPPGLE P P L PVA
Sbjct: 6 LPPSSAAAPAPEPGITEQPGPRSPPPSPPGLEEPLEGTNPDVPH--PDLAPVA 56
>gb|AAC64924.1| (AF066860) homeodomain protein; MNR2 [Gallus gallus]
Length = 300
Score = 32.1 bits (71), Expect = 7.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 11 AAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGP 51
A K PR P A PG +T + P+AP+ + PLGP
Sbjct: 18 AEKPPRSASPPGLSPAGSPGPAGRTDTPSPRAPQAATPLGP 58
>ref|NP_044328.1| ORF for replicase protein [Kennedya yellow mosaic virus]
sp|P36304|POLR_KYMVJ RNA REPLICASE POLYPROTEIN
pir||JQ0533 genome polyprotein - Kennedya yellow mosaic virus (strain Jervis
Bay)
dbj|BAA00532.1| (D00637) ORF for replicase protein [Kennedya yellow mosaic virus]
Length = 1874
Score = 31.7 bits (70), Expect = 9.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 1 MPPAQG--YEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTR 56
+PP+Q + A + P + P P+ +PP ELK S+ P P S+ G P +
Sbjct: 630 LPPSQPPLSQGPATQAPSAQPTPGEPLLAPPTTELKPESSNPNNPNPSSSAGSNPPPK 687
Database: nr
Number of letters in database: 191,393,013
Number of sequences in database: 605,060
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86550057
Number of Sequences: 605060
Number of extensions: 3185507
Number of successful extensions: 7635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7623
Number of HSP's gapped (non-prelim): 13
length of query: 256
length of database: 191,393,013
effective HSP length: 56
effective length of query: 200
effective length of database: 157,509,653
effective search space: 31501930600
effective search space used: 31501930600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 70 (31.7 bits)
