Number of segment pairs = 42; number of pairwise comparisons = 13
'+' means given segment; '-' means reverse complement

Overlaps            Containments  No. of Constraints Supporting Overlap
Contig 1: might be a intronless cDNA
Contig 2: might contain a intron
******************* Contig 1 ********************
ANL_B3-4_1700REV_01.AB1+
                    ANL_ALS008_UNI_- is in ANL_B3-4_1700REV_01.AB1+
ANL_B3-4_290REV_06.AB1+
******************* Contig 2 ********************
ANL_B3-6_290REV_14.AB1-
ANL_B3-1_290REV_13.AB1-
ANL_B3-1_870REV_02.AB1+
                    ANL_B3-6_870REV_01.AB1+ is in ANL_B3-1_870REV_02.AB1+

DETAILED DISPLAY OF CONTIGS
******************* Contig 1 ********************



>Contig1_rev
CCCAGCTGCAATTCCGNTCGCTTGCTGTCCATAAACCGCCCCAGTCTAGCTATCGCCATG
TAACCCACTGCAAGNTACCTGCTTTCTCTTGCGCTTGCGTTTTCCTTGTCCAGATAGCCC
AGTAGCTGACATTCATCCGGGGTCAGCACCGTTCTGCGGACTGGCTTCTACGTGTTCCGC
TTCCTTTAGCAGCCCTTGCGCCCTGAATTTTGTTAAAATTCGCGTNAATTTTTGTTAAAT
CAGCTCATTTTTTAACCAATAGGCCGAAATCGGCAAAATCCCTTATAAATCAAAAGAATA
GACCGAGATAGGGTTGAGTGTTGTTCCAGTTTGGAACAAGAGTCCACTATTAAAGAACGT
GGACTCCAACGTCAAAGGGCGAAAAACCGTCTATCAGGGCGATGGCCCACTACGTGAACC
ATCACCCTAATCAAGTTTTTTGGGGTCGAGGTGCCGTAAAGCACTAAATCGGAACCCTAA
AGGGAGCCCCCGATTTAGAGCTTGACGGGGAAAGCCGGCGAACGTGGCGAGAAAGGAAGG
GAAGAAAGCGAAAGGAGCGGGCGCTAGGGCGCTGGCAAGTGTAGCGGTCACGCTGCGCGT
AACCACCACACCCGCCGCGCTTAATGCGCCGCTACAGGGCGCGTCCATTCGCCATTCAGG
CTGCGCAACTGTTGGGAAGGGCGATCGGTGCGGGCCTCTTCGCTATTACGCCAGCTGGCG
AAAGGGGGATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCACGA
CGTTGTAAAACGACGGCCAGTGAATTGTAATACGACTCACTATAGGGCGAATTGGGCCCT
CTAGATGCATGCTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGCCCTTCGGT
GTCTGTGTTTTGCTGGAATTGGTTAAATGGGTTTTTGTATAGCTTAAGAGAAGCAGGAAA
TGTTTCGAAAGAGAAAAGATATTAGTAGAAGAGTTAAGACTTGGGAAAATAAAATTGACA
CCTTCCTGTTTCAGGAAACATTTTTGTATAGCAGCTTGTTTAATGCCAAACTAAATCAAA
GCTAAACAAATGAAAAGCCGCCTGAGAAGAAAGGCCTGTCATCTGTCACCAAGAGCAATG
GGCTTCTCAATATCACCTTTAAATATGACAACTGCACTCCTTACCTGAATTCAGTGGGAA
AGCATGTGATTGGAGATGTGCAGAATATAACAATCAGTCAGTATGCATGTTATGAACAAG
TTGCAGTCACAATACTTTGGACAGCAAATGCCATTGGGATTGAATACCTGAGAGGATTCC
GTGTAATACTTGAAGAGTTAAAATCAGAGGGAAGGCAATGTCAGCAGATGGTTTTAAGAG
ATCCAAAGCAGCTCAGCCCAAGTTTTAAAAGAACAGGAATGGAATCCAATCCCTTTGCAA
ATCTGAAGTTTGAAACAGATTACTTTGTCAAGATTGTGCCTTTTCCTTCCATTAAAAATG
AAAGTAATTATCACCCATTCTTTTTCCGAACTCGGCCATGTGAATTATTGCTACAGCCCG
AAAACCTCATCTGCAAACCTTACTGGAAGCCACGGAATCTGAATGTTACCCAGCAGGGTT
TTAATATGCAAGTGTCTTTTGATCATGCTCCCCACCACTTTGGATTTAGATATTACTTTC
TTCACTACAAACTGAAGCATGAAGGGCCATTCAAGCAAAAGACCTGCAAACAGGATCAAA
ACACAGATACTACAAGTTGTATTCCTTCAGAATGTAACTCCAGGGGATTATATCATGCGA
GCTGGNNCGATGACACTAATACAACAAGAAAAACCAAG


                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ CTTGGTTTTTCTTGTTGTATTAGTGTCATCGNNCCAGCTCGCATGATATAATCCCCTGGA
                      ____________________________________________________________
consensus             CTTGGTTTTTCTTGTTGTATTAGTGTCATCGNNCCAGCTCGCATGATATAATCCCCTGGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ GTTACATTCTGAAGGAATACAACTTGTAGTATCTGTGTTTTGATCCTGTTTGCAGGTCTT
                      ____________________________________________________________
consensus             GTTACATTCTGAAGGAATACAACTTGTAGTATCTGTGTTTTGATCCTGTTTGCAGGTCTT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TTGCTTGAATGGCCCTTCATGCTTCAGTTTGTAGTGAAGAAAGTAATATCTAAATCCAAA
ANL_ALS008_UNI_-                                         GAAGAAAGTA-TATCTAA-TCCAAA
                      ____________________________________________________________
consensus             TTGCTTGAATGGCCCTTCATGCTTCAGTTTGTAGTGAAGAAAGTAATATCTAAATCCAAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ GTTGTGGGGAGCATGATCAAAAGACACTTGCATATTAAAACCCTGCTGGGTAACATTCAG
ANL_ALS008_UNI_-      GTGG-GGGGAGCATGATCAAA-GA-ACTTGCATATTAAA-CCCTGCTGG-TAACATTCAG
                      ____________________________________________________________
consensus             GTGGTGGGGAGCATGATCAAAAGACACTTGCATATTAAAACCCTGCTGGGTAACATTCAG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ ATTCCGTGGCTTCCAGTAAGGTTTGCAGATGAGGTTTTCGGGCTGTAGCAATAATTCACA
ANL_ALS008_UNI_-      AT-CCGTGGNT-CCAGTAAGGTTTGCAGATGAGGTTTTCGGGCTGTAGCAATAATTCACA
                      ____________________________________________________________
consensus             ATTCCGTGGCTTCCAGTAAGGTTTGCAGATGAGGTTTTCGGGCTGTAGCAATAATTCACA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TGGCCGAGTTCGGAAAAAGAATGGGTGATAATTACTTTCATTTTTAATGGAAGGAAAAGG
ANL_ALS008_UNI_-      TG-CCGAGTTCGGAAAAAGAATGG-TGATAATTACTTTCATTTTTAATGNAAGGAAAAGG
                      ____________________________________________________________
consensus             TGGCCGAGTTCGGAAAAAGAATGGGTGATAATTACTTTCATTTTTAATGGAAGGAAAAGG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ CACAATCTTGACAAAGTAATCTGTTTCAAACTTCAGATTTGCAAAGGGATTGGATTCCAT
ANL_ALS008_UNI_-      CACAATCTTGACAAAGTAATCTGTTTCAAACTTCAGATTTGCAAAGGGATTGGATTCCAT
                      ____________________________________________________________
consensus             CACAATCTTGACAAAGTAATCTGTTTCAAACTTCAGATTTGCAAAGGGATTGGATTCCAT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TCCTGTTCTTTTAAAACTTGGGCTGAGCTGCTTTGGATCTCTTAAAACCATCTGCTGACA
ANL_ALS008_UNI_-      TCCTGTTCTTTTAAAACTTGGGCTGAGCTGCTTTGGATCTCTTAAAACCATCTGCTGACA
                      ____________________________________________________________
consensus             TCCTGTTCTTTTAAAACTTGGGCTGAGCTGCTTTGGATCTCTTAAAACCATCTGCTGACA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TTGCCTTCCCTCTGATTTTAACTCTTCAAGTATTACACGGAATCCTCTCAGGTATTCAAT
ANL_ALS008_UNI_-      TTGCCTTCCCTCTGATTTTAACTCTTCAAGTATTACACGGAATCCTCTCAGGTATTCAAT
                      ____________________________________________________________
consensus             TTGCCTTCCCTCTGATTTTAACTCTTCAAGTATTACACGGAATCCTCTCAGGTATTCAAT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ CCCAATGGCATTTGCTGTCCAAAGTATTGTGACTGCAACTTGTTCATAACATGCATACTG
ANL_ALS008_UNI_-      CCCAATGGCATTTGCTGTCCAAAGTATTGTGACTGCAACTTGTTCATAACATGCATACTG
                      ____________________________________________________________
consensus             CCCAATGGCATTTGCTGTCCAAAGTATTGTGACTGCAACTTGTTCATAACATGCATACTG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ ACTGATTGTTATATTCTGCACATCTCCAATCACATGCTTTCCCACTGAATTCAGGTAAGG
ANL_ALS008_UNI_-      ACTGATTGTTATATTCTGCACATCTCCAATCACATGCTTTCCCACTGAATTCAGGTAAGG
                      ____________________________________________________________
consensus             ACTGATTGTTATATTCTGCACATCTCCAATCACATGCTTTCCCACTGAATTCAGGTAAGG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ AGTGCAGTTGTCATATTTAAAGGTGATATTGAGAAGCCCATTGCTCTTGGTGACAGATGA
ANL_ALS008_UNI_-      AGTGCAGTTGTCATATTTAAAGGTGATATTGAGAAGCCCATTGCTCTTGGTGACAGATGA
ANL_B3-4_290REV_06.A+                             TTGAGAAGCCCATTGCTCTTGGTGACAGATGA
                      ____________________________________________________________
consensus             AGTGCAGTTGTCATATTTAAAGGTGATATTGAGAAGCCCATTGCTCTTGGTGACAGATGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ CAGGCCTTTCTTCTCAGGCGGCTTTTCATTTGTTTAGCTTTGATTTAGTTTGGCATTAAA
ANL_ALS008_UNI_-      CAGGCCTTTCTTCTCAGGCGGCTTTTCATTTGTTTAGCTTTGATTTAGTTTGGCATTAAA
ANL_B3-4_290REV_06.A+ CAGGCCTTTCTTCTCAGGCGGCTTTTCATTTGTTTAGCTTTGATTTAGTTTGGCATTAAA
                      ____________________________________________________________
consensus             CAGGCCTTTCTTCTCAGGCGGCTTTTCATTTGTTTAGCTTTGATTTAGTTTGGCATTAAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ CAAGCTGCTATACAAAAATGTTTCCTGAAAACAGGAAGGTGTCAATTTTATTTTCCCA-G
ANL_ALS008_UNI_-      CAAGCTGCTATACAAAAATGTTTCCTGAAA-CAGGAAGGTGTCAATTTTATTTTCCCAAG
ANL_B3-4_290REV_06.A+ CAAGCTGCTATACAAAAATGTTTCCTGAAA-CAGGAAGGTGTCAATTTTATTTTCCCAAG
                      ____________________________________________________________
consensus             CAAGCTGCTATACAAAAATGTTTCCTGAAA-CAGGAAGGTGTCAATTTTATTTTCCCAAG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TCTTAACTCTTCTACTAATATCTTTTCTCTTTCGAA-CATTTCCTGCTTCTCTTAAGCTA
ANL_ALS008_UNI_-      TCTTAACTCTTCTACTAATATCTTTTCTCTTTCGAAACATTTCCTGCTTCTCTTAAGCTA
ANL_B3-4_290REV_06.A+ TCTTAACTCTTCTACTAATATCTTTTCTCTTTCGAAACATTTCCTGCTTCTCTTAAGCTA
                      ____________________________________________________________
consensus             TCTTAACTCTTCTACTAATATCTTTTCTCTTTCGAAACATTTCCTGCTTCTCTTAAGCTA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TACAAAA-CCCATTTANCCA-TTCCAGCAAAACACAGACACCGAAGGGCGA-TTCTGCAG
ANL_ALS008_UNI_-      TACAAAAACCCATTTAACCAATTCCAGCAAAACACAGACACCGAAGGGCGAATTCTGCAG
ANL_B3-4_290REV_06.A+ TACAAAAACCCATTTAACCAATTCCAGCAAAACACAGACACCGAAGGGCGAATTCTGCAG
                      ____________________________________________________________
consensus             TACAAAAACCCATTTAACCAATTCCAGCAAAACACAGACACCGAAGGGCGAATTCTGCAG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ ATATCCATCACACTGGCGGCCGCTCGAGC-TGCATCTAGANGGCCNA-TTCGCC-TATAG
ANL_ALS008_UNI_-      ATATCCATCACACTGGCGGCCGCTCGAGCATGCATCTAGAGGGCC               
ANL_B3-4_290REV_06.A+ ATATCCATCACACTGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAG
                      ____________________________________________________________
consensus             ATATCCATCACACTGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_1700REV_01.+ TGAGTCGNATTACAAT                                            
ANL_B3-4_290REV_06.A+ TGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGG
                      ____________________________________________________________
consensus             TGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ CGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGA
                      ____________________________________________________________
consensus             CGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ AGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCG
                      ____________________________________________________________
consensus             AGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ CCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACA
                      ____________________________________________________________
consensus             CCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ CTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTC
                      ____________________________________________________________
consensus             CTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ GCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCT
                      ____________________________________________________________
consensus             GCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ TTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCG
                      ____________________________________________________________
consensus             TTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ CCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTC
                      ____________________________________________________________
consensus             CCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ TTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTATAAGGG
                      ____________________________________________________________
consensus             TTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTATAAGGG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ ATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTNACGCGA
                      ____________________________________________________________
consensus             ATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTNACGCGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ ATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAGCCAGT
                      ____________________________________________________________
consensus             ATTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAGCCAGT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ CCGCAGAACGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGAAAA
                      ____________________________________________________________
consensus             CCGCAGAACGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGAAAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ CGCAAGCGCAAGAGAAAGCAGGTANCTTGCAGTGGGTTACATGGCGATAGCTAGACTGGG
                      ____________________________________________________________
consensus             CGCAAGCGCAAGAGAAAGCAGGTANCTTGCAGTGGGTTACATGGCGATAGCTAGACTGGG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-4_290REV_06.A+ GCGGTTTATGGACAGCAAGCGANCGGAATTGCAGCTGGG
                      ____________________________________________________________
consensus             GCGGTTTATGGACAGCAAGCGANCGGAATTGCAGCTGGG

******************* Contig 2 ********************
                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- TTAATGGTTTTGAAGCTTAGAGAGCAGAAATTTNGAAGNGAAAGATATAGTAGGAGAGTA
                      ____________________________________________________________
consensus             TTAATGGTTTTGAAGCTTAGAGAGCAGAAATTTNGAAGNGAAAGATATAGTAGGAGAGTA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- AGACTNGGAAATAAAATGACCCTTC-TGTTCAGGAACATTTTTGTATAGCAGCTTGTTAA
ANL_B3-1_290REV_13.A-         AAATAAANTGACNCTTCCTGTTCAGAAAC-TTTTTGTATAGCAGCT-GTTAA
                      ____________________________________________________________
consensus             AGACTNGGAAATAAAATGACCCTTCCTGTTCAGAAACATTTTTGTATAGCAGCTTGTTAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- TGCCNAACTAAATCAAAGCTAACAAATGAAA-GCCGCCTGAGAAGAAAGTGAGGTTACAA
ANL_B3-1_290REV_13.A- TGCCAAACTAA-TCAAAGCTAANCAATGAAAAGCCGCCTGAGAAGAAAGTGAGNTNNNAA
                      ____________________________________________________________
consensus             TGCCAAACTAAATCAAAGCTAACAAATGAAAAGCCGCCTGAGAAGAAAGTGAGGTTACAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- AAATGACTTCCAAGGATGCTGTTAAGATCTGCTTTGCTTTTGTCTTTGTATGCTATTTGT
ANL_B3-1_290REV_13.A- AA-TGACTTCCAAGGATGCTGT-AAGATCTGCTTTGCTTTGTTCTT-GTATGCTATTTGT
                      ____________________________________________________________
consensus             AAATGACTTCCAAGGATGCTGTTAAGATCTGCTTTGCTTTGGTCTTTGTATGCTATTTGT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- ATCTTTTCTAAGGTGACTTCACTCCTACTTTATTTT-CTCTCTAACCACTTGACCATGAG
ANL_B3-1_290REV_13.A- ATCTTTTCTAAGGTGACTTCACTCCTACTTTATTTTTCTCTCTAACCACTTGACCATGAG
                      ____________________________________________________________
consensus             ATCTTTTCTAAGGTGACTTCACTCCTACTTTATTTTTCTCTCTAACCACTTGACCATGAG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- ATGCAGTGCATGTTTATGCGATTCTGACAGTGCCTGCTTACAGTTGGAGTCCTCTAATAC
ANL_B3-1_290REV_13.A- ATGCAGTGCATGTTTATGCGATTCTGACAGTGCCTGCTTACAGTTGGAGTCCTCTAATAC
                      ____________________________________________________________
consensus             ATGCAGTGCATGTTTATGCGATTCTGACAGTGCCTGCTTACAGTTGGAGTCCTCTAATAC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- TATTAACTGCTTCTCTTTATGTTGTAGTGGTAAACCAGATATAAACACAATTCCATGAAA
ANL_B3-1_290REV_13.A- TATTAACTGCTTCTCTTTATGTTGTAGTGGTAAACCAGATATAAACACAATTCCATGAAA
                      ____________________________________________________________
consensus             TATTAACTGCTTCTCTTTATGTTGTAGTGGTAAACCAGATATAAACACAATTCCATGAAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- AAGGGTAGTGGTGTGCTTCTTGTTTGCTTTTTTAGATAATGGATATTTGCATTTCAAGAA
ANL_B3-1_290REV_13.A- AAGGGTAGTGGTGTGCTTCTTGTTTGCTTTTTTAGATAATGGATATTTGCATTTCAAGAA
                      ____________________________________________________________
consensus             AAGGGTAGTGGTGTGCTTCTTGTTTGCTTTTTTAGATAATGGATATTTGCATTTCAAGAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- ATGATATTCCCCCCATGAGACTCAGTGTTACAGTTTTGAATGCTGTGCCTTGCATTTTGT
ANL_B3-1_290REV_13.A- ATGATATTCCCCCCATGAGACTCAGTGTTACAGTTTTGAATGCTGTGCCTTGCATTTTGT
                      ____________________________________________________________
consensus             ATGATATTCCCCCCATGAGACTCAGTGTTACAGTTTTGAATGCTGTGCCTTGCATTTTGT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- GTTTCAAAAACGACTTCAGTGTGTTCTGAAAGGCACTGCGACCCCTGAAGTCCTGTGCTC
ANL_B3-1_290REV_13.A- GTTTCAAAAACGACTTCAGTGTGTTCTGAAAGGCACTGCGACCCCTGAAGTCCTGTGCTC
                      ____________________________________________________________
consensus             GTTTCAAAAACGACTTCAGTGTGTTCTGAAAGGCACTGCGACCCCTGAAGTCCTGTGCTC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- TTTTGTAGGACAGCACTCATCAGCTCACAGAGGTGTTTAAATTCCTCTCGGAGGGCATTG
ANL_B3-1_290REV_13.A- TTTTGTAGGACAGCACTCATCAGCTCACAGAGGTGTTTAAATTCCTCTCGGAGGGCATTG
ANL_B3-1_870REV_02.A+                                        AATTCCTCTCGGAGGGCATTG
ANL_B3-6_870REV_01.A+                                        AATTCCTCTCGGAGGGCATTG
                      ____________________________________________________________
consensus             TTTTGTAGGACAGCACTCATCAGCTCACAGAGGTGTTTAAATTCCTCTCGGAGGGCATTG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- GGGCGGTTCTGATGGCACCTTAGTTCCTGTGACATTGAGCAAGACGTGGTGTGTTTTGAT
ANL_B3-1_290REV_13.A- GGGCGGTTCTGATGGCACCTTAGTTCCTGTGACATTGAGCAAGACGTGGTGTGTTTTGAT
ANL_B3-1_870REV_02.A+ GGGCGGTTCTGATGGCACCTTAGTTCCCNTGACATTGAGCAAGACGTGGTGTGTTTTGAT
ANL_B3-6_870REV_01.A+ GGGCGGGTCTGATGGCACCTTAGTTCCCNTGACATTGAGCAAGACGTGGTGTGTTTTGAT
                      ____________________________________________________________
consensus             GGGCGGTTCTGATGGCACCTTAGTTCCCGTGACATTGAGCAAGACGTGGTGTGTTTTGAT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- AATATTTGAGAAAATATTATAAAATGTTTGATCAAAACAGTGGCCTATATGGAAGAATGG
ANL_B3-1_290REV_13.A- AATATTTGAGAAAATATTATAAAATGTTTGATCAAAACAGTGGCCTATATGGAAGAATGG
ANL_B3-1_870REV_02.A+ AATATTTGAGAAAATATTATAAAATGTTTGATCAAAACAGTGGCCTATATGGAAGAATGG
ANL_B3-6_870REV_01.A+ AATATTTGAGAAAATATTATAAAATGTTTGATCAAAACAGTGGCCTATATGGAAGAATGG
                      ____________________________________________________________
consensus             AATATTTGAGAAAATATTATAAAATGTTTGATCAAAACAGTGGCCTATATGGAAGAATGG

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- ACTTCCGCAGTATACACGCCTACTGTAGGTTGCTCCAAAAGTAATGCCTCCTATTTATTT
ANL_B3-1_290REV_13.A- ACTTCCGCAGTATACACGCCTACTGTAGGTTGCTCCAAAAGTAATGCCTCCTATTTATTT
ANL_B3-1_870REV_02.A+ ACTTCCGCAGTATACACGCCTACTGTAGGTTGCTCCAAAAGTAATGCCTCCTATTTATTT
ANL_B3-6_870REV_01.A+ ACTTCCGCAGTATACACGCCTACTGTAGGTTGCTCCAAAAGTAATGCCTCCTATTTATTT
                      ____________________________________________________________
consensus             ACTTCCGCAGTATACACGCCTACTGTAGGTTGCTCCAAAAGTAATGCCTCCTATTTATTT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- CCACAGAAACTATAACGGCTACAAAGAGCACAGTAACATTATTTGATAGAGCAAATTACC
ANL_B3-1_290REV_13.A- CCACAGAAACTATAACGGCTACAAAGAGCACAGTAACATTATTTGATAGAGCAAATTACC
ANL_B3-1_870REV_02.A+ CCACAGAAACTATAACGGCTACAAAGAGCACAGTAACATTATTTGATAGAGCAAATTACC
ANL_B3-6_870REV_01.A+ CCACAGAAACTATAACGGCTACAAAGAGCACAGTAACATTATTTGATAGAGCAAATTACC
                      ____________________________________________________________
consensus             CCACAGAAACTATAACGGCTACAAAGAGCACAGTAACATTATTTGATAGAGCAAATTACC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- AGCTACAGAATGCTGTTTTCCAACACAGTCCCTTAGCAATGTTATGCTGGGAATGTTGAT
ANL_B3-1_290REV_13.A- AGCTACAGAATGCTGTTTTCCAACACAGTCCCTTAGCAATGTTATGCTGGGAATGTTGAT
ANL_B3-1_870REV_02.A+ AGCTACAGAATGCTGTTTTCCAACACAGTCCCTTAGCAATGTTATGCTGGGAATGTTGAT
ANL_B3-6_870REV_01.A+ AGCTACAGAATGCTGTTTTCCAACACAGTCCCTTAGCAATGTTATGCTGGGAATGTTGAT
                      ____________________________________________________________
consensus             AGCTACAGAATGCTGTTTTCCAACACAGTCCCTTAGCAATGTTATGCTGGGAATGTTGAT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- GGCAGGAATATGCAACCTGGTCTGTCACTGCTTGTGCTCAGATTGTCTGACTGATGGTGT
ANL_B3-1_290REV_13.A- GGCAGGAATATGCAACCTGGTCTGTCACTGCTTGTGCTCAGATTGTCTGACTGATGGTGT
ANL_B3-1_870REV_02.A+ GGCAGGAATATGCAACCTGGTCTGTCACTGCTTGTGCTCAGATTGTCTGACTGATGGTGT
ANL_B3-6_870REV_01.A+ GGCAGGAATATGCAACCTGGTCTGTCACTGCTTGTGCTCAGATTGTCTGACTGATGGTGT
                      ____________________________________________________________
consensus             GGCAGGAATATGCAACCTGGTCTGTCACTGCTTGTGCTCAGATTGTCTGACTGATGGTGT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- GTTAAACAGAAGGAAAAAAAAAACAAACAATGAGTTCTGTCACTGTCCAAAACACTACTT
ANL_B3-1_290REV_13.A- GTTAAACAGAAGGAAAAAAAAAACAAACAATGAGTTCTGTCACTGTCCAAAACACTACTT
ANL_B3-1_870REV_02.A+ GTTAAACAGAAGGAAAAAAAAAACAAACAATGAGTTCTGTCACTGTCCAAAACACTACTT
ANL_B3-6_870REV_01.A+ GTTAAACAGAAGGAAAAAAAAAACAAACAATGAGTTCTGTCACTGTCCAAAACACTACTT
                      ____________________________________________________________
consensus             GTTAAACAGAAGGAAAAAAAAAACAAACAATGAGTTCTGTCACTGTCCAAAACACTACTT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- ACAAAGAAGGAATGATTAACATTTTTTTTTTAATTCACATTATTTTCTTGATATTTGTCT
ANL_B3-1_290REV_13.A- ACAAAGAAGGAATGATTAACATTTTTTTTTTAATTCACATTATTTTCTTGATATTGGTCT
ANL_B3-1_870REV_02.A+ ACAAAGAAGGAATGATTAACATTTTTTTTTTAATTCACATTATTTTCTTGATATTTCTCT
ANL_B3-6_870REV_01.A+ ACAAAGAAGGAATGATTAACATTTTTTTTTTAATTCACATTATTTTCTTGATATTTCTCT
                      ____________________________________________________________
consensus             ACAAAGAAGGAATGATTAACATTTTTTTTTTAATTCACATTATTTTCTTGATATTTCTCT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-6_290REV_14.A- ACAGGGCCTGTCATCTGTCACCAAGAGCAATGGGCTTCTCAA                  
ANL_B3-1_290REV_13.A- ACAGGGCCTGTCATCTGTCACCAAGAGCAATGGGCTTCTCAA                  
ANL_B3-1_870REV_02.A+ ACAGGGCCTGTCATCTGTCACCAAGAGCAATGGGCTTCTCAATATCACCTTTAAATATGA
ANL_B3-6_870REV_01.A+ ACAGGGCCTGTCATCTGTCACCAAGAGCAATGGGCTTCTCAATATCACCTTTAAATATGA
                      ____________________________________________________________
consensus             ACAGGGCCTGTCATCTGTCACCAAGAGCAATGGGCTTCTCAATATCACCTTTAAATATGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ CAACTGCACTCCTTACCTGAATTCAGTGGGAAAGCATGTGATTGGAGATGTGCAGAATAT
ANL_B3-6_870REV_01.A+ CAACTGCACTCCTTACCTGAATTCAGTGGGAAAGCATGTGATTGGAGATGTGCAGAATAT
                      ____________________________________________________________
consensus             CAACTGCACTCCTTACCTGAATTCAGTGGGAAAGCATGTGATTGGAGATGTGCAGAATAT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ AACAATCAGTCAGTATGCATGTTATGAACAAGTTGCAGTCACAATACTTTGGACAGCAAA
ANL_B3-6_870REV_01.A+ AACAATCAGTCAGTATGCATGTTATGAACAAGTTGCAGTCACAATACTTTGGACAGCAAA
                      ____________________________________________________________
consensus             AACAATCAGTCAGTATGCATGTTATGAACAAGTTGCAGTCACAATACTTTGGACAGCAAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ TGCCATTGGGATTGAATACCTGAGAGGATTCCGTGTAATACTTGAAGAGTTAAAATCAGA
ANL_B3-6_870REV_01.A+ TGCCATTGGGATTGAATACCTGAGAGGATTCCGTGTAATACTTGAAGAGTTAAAATCAGA
                      ____________________________________________________________
consensus             TGCCATTGGGATTGAATACCTGAGAGGATTCCGTGTAATACTTGAAGAGTTAAAATCAGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ GGGAAGGCAATGTCAGCAGATGGTTTTAAGAGATCCAAAGCAGCTCAGCCCAAGTTTTAA
ANL_B3-6_870REV_01.A+ GGGAAGGCAATGTCAGCAGATGGTTTTAAGAGATCCAAAGCAGCTCAGCCCAAGTTTTAA
                      ____________________________________________________________
consensus             GGGAAGGCAATGTCAGCAGATGGTTTTAAGAGATCCAAAGCAGCTCAGCCCAAGTTTTAA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ AAGAACAGGAATGGAATCCAATCCCTTTGCAA-TCTGAAGTTTGAAACAGATTACTTTGT
ANL_B3-6_870REV_01.A+ AAGAACAGGAATGGAATCCAATCCCTTTGCAAATCTGAAGTTTGAAACAGATTACTTTGT
                      ____________________________________________________________
consensus             AAGAACAGGAATGGAATCCAATCCCTTTGCAAATCTGAAGTTTGAAACAGATTACTTTGT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ CAAGATTGTGCCTTTTCCTTCCATTAAAAAATGAAAGTAATTATCACCCATTCTTTTTCC
ANL_B3-6_870REV_01.A+ CAAGATTGTGCCTTTTCCTTCCATTAAAA--TGAAAGTAATTATCACCCATTCTTTTTCC
                      ____________________________________________________________
consensus             CAAGATTGTGCCTTTTCCTTCCATTAAAAAATGAAAGTAATTATCACCCATTCTTTTTCC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ GAACTCGGCCATGTGATT-ATTGCTACAGCCAGAAAACCTCATCTGCAAACCTTACTGGA
ANL_B3-6_870REV_01.A+ GAACTCGGCCATGTGATTTATTGCTACAGCCAGAAAACCTCATCTGCAAACCTTACTGGA
                      ____________________________________________________________
consensus             GAACTCGGCCATGTGATTTATTGCTACAGCCAGAAAACCTCATCTGCAAACCTTACTGGA

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ AGCCACGGAATCTGAATGTTACCCAGCAGGGTTTNATATGCAAGTGTCTTTTGATCATGC
ANL_B3-6_870REV_01.A+ AGCCACGGAATCTGAATGTTACC-AGCAGGGTTTNATATGCAAGTGTCTTTTGATCATGC
                      ____________________________________________________________
consensus             AGCCACGGAATCTGAATGTTACCCAGCAGGGTTTNATATGCAAGTGTCTTTTGATCATGC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ TCCCACAACTTTNGGATTAGATATNACTTTNTCACTACAAACTGAAGCATGAAGGGCNTT
ANL_B3-6_870REV_01.A+ TCCCCCAACTT--GGATTTAAAATTACTTCNTCACTACAA-CTGAAGCATGA        
                      ____________________________________________________________
consensus             TCCCACAACTTTNGGATTAAAAATTACTTCNTCACTACAAACTGAAGCATGAAGGGCNTT

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ CAGCAAAAGACCTGCAACAGGTATGTCCTGTGTATGCGACTCTCAAGCAGAAACTCATTC
                      ____________________________________________________________
consensus             CAGCAAAAGACCTGCAACAGGTATGTCCTGTGTATGCGACTCTCAAGCAGAAACTCATTC

                          .    :    .    :    .    :    .    :    .    :    .    :
ANL_B3-1_870REV_02.A+ CATGGA
                      ____________________________________________________________
consensus             CATGGA

Singletons

Contigs

>Contig1
CTTGGTTTTTCTTGTTGTATTAGTGTCATCGNNCCAGCTCGCATGATATAATCCCCTGGA
GTTACATTCTGAAGGAATACAACTTGTAGTATCTGTGTTTTGATCCTGTTTGCAGGTCTT
TTGCTTGAATGGCCCTTCATGCTTCAGTTTGTAGTGAAGAAAGTAATATCTAAATCCAAA
GTGGTGGGGAGCATGATCAAAAGACACTTGCATATTAAAACCCTGCTGGGTAACATTCAG
ATTCCGTGGCTTCCAGTAAGGTTTGCAGATGAGGTTTTCGGGCTGTAGCAATAATTCACA
TGGCCGAGTTCGGAAAAAGAATGGGTGATAATTACTTTCATTTTTAATGGAAGGAAAAGG
CACAATCTTGACAAAGTAATCTGTTTCAAACTTCAGATTTGCAAAGGGATTGGATTCCAT
TCCTGTTCTTTTAAAACTTGGGCTGAGCTGCTTTGGATCTCTTAAAACCATCTGCTGACA
TTGCCTTCCCTCTGATTTTAACTCTTCAAGTATTACACGGAATCCTCTCAGGTATTCAAT
CCCAATGGCATTTGCTGTCCAAAGTATTGTGACTGCAACTTGTTCATAACATGCATACTG
ACTGATTGTTATATTCTGCACATCTCCAATCACATGCTTTCCCACTGAATTCAGGTAAGG
AGTGCAGTTGTCATATTTAAAGGTGATATTGAGAAGCCCATTGCTCTTGGTGACAGATGA
CAGGCCTTTCTTCTCAGGCGGCTTTTCATTTGTTTAGCTTTGATTTAGTTTGGCATTAAA
CAAGCTGCTATACAAAAATGTTTCCTGAAACAGGAAGGTGTCAATTTTATTTTCCCAAGT
CTTAACTCTTCTACTAATATCTTTTCTCTTTCGAAACATTTCCTGCTTCTCTTAAGCTAT
ACAAAAACCCATTTAACCAATTCCAGCAAAACACAGACACCGAAGGGCGAATTCTGCAGA
TATCCATCACACTGGCGGCCGCTCGAGCATGCATCTAGAGGGCCCAATTCGCCCTATAGT
GAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGC
GTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAA
GAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGACGCGC
CCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACAC
TTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCG
CCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTT
TACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGC
CCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCT
TGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTATAAGGGA
TTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTNACGCGAA
TTTTAACAAAATTCAGGGCGCAAGGGCTGCTAAAGGAAGCGGAACACGTAGAAGCCAGTC
CGCAGAACGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGAAAAC
GCAAGCGCAAGAGAAAGCAGGTANCTTGCAGTGGGTTACATGGCGATAGCTAGACTGGGG
CGGTTTATGGACAGCAAGCGANCGGAATTGCAGCTGGG
>Contig2
TTAATGGTTTTGAAGCTTAGAGAGCAGAAATTTNGAAGNGAAAGATATAGTAGGAGAGTA
AGACTNGGAAATAAAATGACCCTTCCTGTTCAGAAACATTTTTGTATAGCAGCTTGTTAA
TGCCAAACTAAATCAAAGCTAACAAATGAAAAGCCGCCTGAGAAGAAAGTGAGGTTACAA
AAATGACTTCCAAGGATGCTGTTAAGATCTGCTTTGCTTTGGTCTTTGTATGCTATTTGT
ATCTTTTCTAAGGTGACTTCACTCCTACTTTATTTTTCTCTCTAACCACTTGACCATGAG
ATGCAGTGCATGTTTATGCGATTCTGACAGTGCCTGCTTACAGTTGGAGTCCTCTAATAC
TATTAACTGCTTCTCTTTATGTTGTAGTGGTAAACCAGATATAAACACAATTCCATGAAA
AAGGGTAGTGGTGTGCTTCTTGTTTGCTTTTTTAGATAATGGATATTTGCATTTCAAGAA
ATGATATTCCCCCCATGAGACTCAGTGTTACAGTTTTGAATGCTGTGCCTTGCATTTTGT
GTTTCAAAAACGACTTCAGTGTGTTCTGAAAGGCACTGCGACCCCTGAAGTCCTGTGCTC
TTTTGTAGGACAGCACTCATCAGCTCACAGAGGTGTTTAAATTCCTCTCGGAGGGCATTG
GGGCGGTTCTGATGGCACCTTAGTTCCCGTGACATTGAGCAAGACGTGGTGTGTTTTGAT
AATATTTGAGAAAATATTATAAAATGTTTGATCAAAACAGTGGCCTATATGGAAGAATGG
ACTTCCGCAGTATACACGCCTACTGTAGGTTGCTCCAAAAGTAATGCCTCCTATTTATTT
CCACAGAAACTATAACGGCTACAAAGAGCACAGTAACATTATTTGATAGAGCAAATTACC
AGCTACAGAATGCTGTTTTCCAACACAGTCCCTTAGCAATGTTATGCTGGGAATGTTGAT
GGCAGGAATATGCAACCTGGTCTGTCACTGCTTGTGCTCAGATTGTCTGACTGATGGTGT
GTTAAACAGAAGGAAAAAAAAAACAAACAATGAGTTCTGTCACTGTCCAAAACACTACTT
ACAAAGAAGGAATGATTAACATTTTTTTTTTAATTCACATTATTTTCTTGATATTTCTCT
ACAGGGCCTGTCATCTGTCACCAAGAGCAATGGGCTTCTCAATATCACCTTTAAATATGA
CAACTGCACTCCTTACCTGAATTCAGTGGGAAAGCATGTGATTGGAGATGTGCAGAATAT
AACAATCAGTCAGTATGCATGTTATGAACAAGTTGCAGTCACAATACTTTGGACAGCAAA
TGCCATTGGGATTGAATACCTGAGAGGATTCCGTGTAATACTTGAAGAGTTAAAATCAGA
GGGAAGGCAATGTCAGCAGATGGTTTTAAGAGATCCAAAGCAGCTCAGCCCAAGTTTTAA
AAGAACAGGAATGGAATCCAATCCCTTTGCAAATCTGAAGTTTGAAACAGATTACTTTGT
CAAGATTGTGCCTTTTCCTTCCATTAAAAAATGAAAGTAATTATCACCCATTCTTTTTCC
GAACTCGGCCATGTGATTTATTGCTACAGCCAGAAAACCTCATCTGCAAACCTTACTGGA
AGCCACGGAATCTGAATGTTACCCAGCAGGGTTTNATATGCAAGTGTCTTTTGATCATGC
TCCCACAACTTTNGGATTAAAAATTACTTCNTCACTACAAACTGAAGCATGAAGGGCNTT
CAGCAAAAGACCTGCAACAGGTATGTCCTGTGTATGCGACTCTCAAGCAGAAACTCATTC
CATGGA